Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017920 | XP_003622663.1 | 82.911 | 316 | 53 | 1 | 1 | 316 | 1 | 315 | 0.0 | 548 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017920 | sp|Q9ZSH7|Y4158_ARATH | 43.269 | 104 | 59 | 0 | 13 | 116 | 30 | 133 | 6.76e-21 | 91.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017920 | G7KVV4 | 82.911 | 316 | 53 | 1 | 1 | 316 | 1 | 315 | 0.0 | 548 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1017920 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017920 | MtrunA17_Chr7g0233521 | 82.671 | 277 | 47 | 1 | 28 | 304 | 1 | 276 | 7.52e-176 | 487 |
| Msa1017920 | MtrunA17_Chr7g0233541 | 70.068 | 294 | 70 | 5 | 28 | 304 | 1 | 293 | 5.59e-150 | 422 |
| Msa1017920 | MtrunA17_Chr3g0131891 | 65.831 | 319 | 85 | 5 | 1 | 304 | 7 | 316 | 3.96e-145 | 412 |
| Msa1017920 | MtrunA17_Chr7g0233561 | 65.421 | 321 | 93 | 4 | 1 | 304 | 6 | 325 | 1.14e-144 | 410 |
| Msa1017920 | MtrunA17_Chr7g0233531 | 66.781 | 292 | 66 | 4 | 28 | 304 | 1 | 276 | 1.05e-132 | 378 |
| Msa1017920 | MtrunA17_Chr7g0233571 | 61.111 | 216 | 66 | 2 | 5 | 203 | 2 | 216 | 3.28e-88 | 263 |
| Msa1017920 | MtrunA17_Chr1g0163071 | 34.564 | 298 | 150 | 7 | 28 | 291 | 1 | 287 | 1.30e-48 | 164 |
| Msa1017920 | MtrunA17_Chr8g0390841 | 35.082 | 305 | 164 | 6 | 11 | 291 | 37 | 331 | 1.29e-47 | 167 |
| Msa1017920 | MtrunA17_Chr1g0208771 | 34.130 | 293 | 148 | 7 | 29 | 291 | 13 | 290 | 2.26e-46 | 162 |
| Msa1017920 | MtrunA17_Chr3g0103181 | 34.564 | 298 | 151 | 9 | 10 | 290 | 9 | 279 | 1.00e-42 | 148 |
| Msa1017920 | MtrunA17_Chr1g0163181 | 32.281 | 285 | 169 | 7 | 22 | 289 | 14 | 291 | 7.65e-34 | 128 |
| Msa1017920 | MtrunA17_Chr1g0163221 | 31.023 | 303 | 177 | 10 | 5 | 290 | 3 | 290 | 1.54e-32 | 123 |
| Msa1017920 | MtrunA17_Chr3g0103191 | 52.252 | 111 | 50 | 2 | 1 | 111 | 1 | 108 | 6.87e-32 | 119 |
| Msa1017920 | MtrunA17_Chr3g0103151 | 54.902 | 102 | 44 | 1 | 10 | 111 | 9 | 108 | 1.15e-31 | 116 |
| Msa1017920 | MtrunA17_Chr5g0419201 | 46.465 | 99 | 53 | 0 | 13 | 111 | 16 | 114 | 1.20e-29 | 111 |
| Msa1017920 | MtrunA17_Chr1g0171611 | 30.450 | 289 | 163 | 7 | 10 | 289 | 6 | 265 | 3.73e-29 | 113 |
| Msa1017920 | MtrunA17_Chr3g0103171 | 29.455 | 275 | 166 | 8 | 29 | 290 | 6 | 265 | 7.45e-29 | 111 |
| Msa1017920 | MtrunA17_Chr1g0163231 | 30.405 | 296 | 166 | 9 | 10 | 289 | 6 | 277 | 1.11e-28 | 112 |
| Msa1017920 | MtrunA17_Chr1g0163261 | 29.773 | 309 | 173 | 9 | 10 | 298 | 6 | 290 | 5.24e-28 | 110 |
| Msa1017920 | MtrunA17_Chr4g0067431 | 29.043 | 303 | 188 | 10 | 11 | 290 | 13 | 311 | 5.74e-28 | 110 |
| Msa1017920 | MtrunA17_Chr1g0163251 | 31.034 | 290 | 183 | 8 | 13 | 297 | 9 | 286 | 1.37e-27 | 110 |
| Msa1017920 | MtrunA17_Chr5g0429931 | 28.727 | 275 | 147 | 8 | 29 | 294 | 11 | 245 | 1.77e-27 | 107 |
| Msa1017920 | MtrunA17_Chr1g0163201 | 29.964 | 277 | 170 | 6 | 29 | 291 | 19 | 285 | 5.40e-27 | 109 |
| Msa1017920 | MtrunA17_Chr3g0077451 | 27.076 | 277 | 144 | 7 | 27 | 294 | 10 | 237 | 3.67e-26 | 103 |
| Msa1017920 | MtrunA17_Chr3g0077411 | 27.797 | 295 | 168 | 9 | 11 | 294 | 260 | 520 | 2.59e-24 | 102 |
| Msa1017920 | MtrunA17_Chr3g0077411 | 26.502 | 283 | 138 | 8 | 12 | 286 | 24 | 244 | 3.52e-23 | 99.8 |
| Msa1017920 | MtrunA17_Chr1g0154041 | 25.683 | 366 | 204 | 12 | 8 | 312 | 11 | 369 | 1.98e-23 | 100 |
| Msa1017920 | MtrunA17_Chr1g0154161 | 24.749 | 299 | 206 | 4 | 11 | 299 | 28 | 317 | 5.02e-23 | 97.1 |
| Msa1017920 | MtrunA17_Chr1g0154131 | 28.772 | 285 | 177 | 7 | 11 | 278 | 182 | 457 | 6.01e-23 | 98.6 |
| Msa1017920 | MtrunA17_Chr1g0154171 | 25.449 | 334 | 183 | 10 | 11 | 290 | 21 | 342 | 9.37e-23 | 97.1 |
| Msa1017920 | MtrunA17_Chr1g0163131 | 29.299 | 314 | 169 | 12 | 6 | 287 | 11 | 303 | 1.97e-22 | 95.1 |
| Msa1017920 | MtrunA17_Chr6g0467351 | 38.571 | 140 | 67 | 4 | 11 | 139 | 13 | 144 | 5.53e-22 | 92.4 |
| Msa1017920 | MtrunA17_Chr3g0077461 | 29.779 | 272 | 134 | 9 | 12 | 278 | 236 | 455 | 3.48e-21 | 93.6 |
| Msa1017920 | MtrunA17_Chr3g0077461 | 39.535 | 86 | 52 | 0 | 29 | 114 | 23 | 108 | 2.68e-18 | 85.1 |
| Msa1017920 | MtrunA17_Chr1g0163101 | 36.806 | 144 | 79 | 3 | 6 | 149 | 10 | 141 | 3.16e-20 | 86.3 |
| Msa1017920 | MtrunA17_Chr4g0033961 | 40.000 | 105 | 61 | 1 | 13 | 115 | 6 | 110 | 4.06e-20 | 90.1 |
| Msa1017920 | MtrunA17_Chr4g0033961 | 30.000 | 130 | 84 | 3 | 168 | 296 | 270 | 393 | 8.28e-12 | 65.5 |
| Msa1017920 | MtrunA17_Chr1g0162441 | 40.404 | 99 | 59 | 0 | 13 | 111 | 7 | 105 | 8.51e-20 | 89.4 |
| Msa1017920 | MtrunA17_Chr1g0162441 | 28.378 | 148 | 95 | 4 | 168 | 310 | 274 | 415 | 4.16e-11 | 63.5 |
| Msa1017920 | MtrunA17_Chr1g0154111 | 22.754 | 334 | 192 | 8 | 11 | 283 | 24 | 352 | 6.58e-19 | 87.4 |
| Msa1017920 | MtrunA17_Chr1g0154191 | 24.781 | 343 | 184 | 9 | 11 | 289 | 20 | 352 | 1.59e-18 | 85.1 |
| Msa1017920 | MtrunA17_Chr3g0077421 | 27.126 | 247 | 123 | 8 | 57 | 294 | 1 | 199 | 5.40e-18 | 80.9 |
| Msa1017920 | MtrunA17_Chr3g0077441 | 27.126 | 247 | 123 | 8 | 57 | 294 | 1 | 199 | 5.40e-18 | 80.9 |
| Msa1017920 | MtrunA17_Chr1g0163241 | 46.988 | 83 | 42 | 1 | 29 | 111 | 23 | 103 | 6.71e-18 | 79.7 |
| Msa1017920 | MtrunA17_Chr1g0163191 | 43.333 | 90 | 49 | 1 | 22 | 111 | 14 | 101 | 1.14e-17 | 79.0 |
| Msa1017920 | MtrunA17_Chr1g0163121 | 40.650 | 123 | 60 | 3 | 27 | 149 | 9 | 118 | 1.20e-17 | 78.6 |
| Msa1017920 | MtrunA17_Chr4g0009491 | 35.088 | 114 | 74 | 0 | 12 | 125 | 224 | 337 | 1.24e-17 | 83.2 |
| Msa1017920 | MtrunA17_Chr4g0009491 | 36.364 | 88 | 56 | 0 | 27 | 114 | 11 | 98 | 8.43e-16 | 77.4 |
| Msa1017920 | MtrunA17_Chr3g0077431 | 26.721 | 247 | 123 | 7 | 57 | 294 | 1 | 198 | 1.51e-17 | 79.7 |
| Msa1017920 | MtrunA17_Chr3g0077361 | 26.022 | 269 | 143 | 8 | 12 | 278 | 39 | 253 | 3.38e-17 | 82.0 |
| Msa1017920 | MtrunA17_Chr1g0163061 | 39.815 | 108 | 58 | 2 | 11 | 114 | 13 | 117 | 3.73e-17 | 80.1 |
| Msa1017920 | MtrunA17_Chr3g0077381 | 37.500 | 88 | 55 | 0 | 27 | 114 | 34 | 121 | 1.22e-16 | 80.1 |
| Msa1017920 | MtrunA17_Chr3g0077381 | 34.211 | 114 | 75 | 0 | 12 | 125 | 246 | 359 | 8.43e-16 | 77.8 |
| Msa1017920 | MtrunA17_Chr1g0162411 | 38.384 | 99 | 59 | 1 | 13 | 111 | 7 | 103 | 3.73e-16 | 78.6 |
| Msa1017920 | MtrunA17_Chr1g0163141 | 36.885 | 122 | 74 | 2 | 24 | 145 | 6 | 124 | 1.54e-15 | 73.6 |
| Msa1017920 | MtrunA17_Chr1g0154151 | 23.214 | 336 | 196 | 6 | 16 | 307 | 14 | 331 | 2.45e-15 | 75.5 |
| Msa1017920 | MtrunA17_Chr1g0154251 | 35.484 | 93 | 59 | 1 | 11 | 103 | 25 | 116 | 1.03e-14 | 74.7 |
| Msa1017920 | MtrunA17_Chr1g0163081 | 36.923 | 130 | 67 | 5 | 28 | 157 | 5 | 119 | 1.68e-14 | 69.7 |
| Msa1017920 | MtrunA17_Chr1g0162161 | 32.692 | 156 | 84 | 6 | 28 | 178 | 3 | 142 | 2.40e-14 | 69.7 |
| Msa1017920 | MtrunA17_Chr1g0154211 | 35.484 | 93 | 59 | 1 | 11 | 103 | 21 | 112 | 3.38e-14 | 72.8 |
| Msa1017920 | MtrunA17_Chr6g0476181 | 47.619 | 84 | 41 | 2 | 28 | 111 | 1 | 81 | 6.37e-14 | 68.6 |
| Msa1017920 | MtrunA17_Chr1g0154101 | 34.783 | 92 | 60 | 0 | 11 | 102 | 23 | 114 | 1.92e-13 | 70.9 |
| Msa1017920 | MtrunA17_Chr1g0154101 | 33.333 | 93 | 60 | 1 | 11 | 103 | 182 | 272 | 3.12e-12 | 67.4 |
| Msa1017920 | MtrunA17_Chr1g0154241 | 28.289 | 152 | 104 | 3 | 11 | 158 | 20 | 170 | 1.50e-12 | 66.6 |
| Msa1017920 | MtrunA17_Chr1g0154071 | 28.947 | 114 | 77 | 2 | 14 | 124 | 157 | 269 | 5.41e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017920 | AT4G01580.1 | 43.269 | 104 | 59 | 0 | 13 | 116 | 30 | 133 | 6.87e-22 | 91.7 |
| Msa1017920 | AT1G49475.1 | 43.137 | 102 | 57 | 1 | 13 | 114 | 34 | 134 | 1.42e-21 | 90.5 |
| Msa1017920 | AT3G18990.1 | 41.414 | 99 | 58 | 0 | 13 | 111 | 6 | 104 | 8.03e-21 | 91.7 |
| Msa1017920 | AT3G18990.2 | 41.414 | 99 | 58 | 0 | 13 | 111 | 6 | 104 | 9.42e-21 | 92.0 |
| Msa1017920 | AT3G18960.2 | 41.346 | 104 | 61 | 0 | 13 | 116 | 30 | 133 | 2.23e-20 | 87.4 |
| Msa1017920 | AT3G18960.1 | 41.346 | 104 | 61 | 0 | 13 | 116 | 30 | 133 | 2.97e-20 | 87.4 |
| Msa1017920 | AT3G18960.3 | 44.318 | 88 | 49 | 0 | 29 | 116 | 9 | 96 | 1.10e-16 | 77.0 |
| Msa1017920 | AT3G53310.1 | 34.314 | 102 | 65 | 2 | 3 | 104 | 2 | 101 | 2.89e-12 | 66.6 |
| Msa1017920 | AT5G18090.1 | 22.680 | 291 | 188 | 10 | 13 | 281 | 18 | 293 | 5.73e-11 | 62.8 |
Find 54 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGTTAAATGAAGGAATT+TGG | 0.170862 | 7_1:-37645866 | Msa1017920:CDS |
| TATTTCTCCACAAACTTTCT+TGG | 0.219009 | 7_1:+37646939 | None:intergenic |
| TGCAAAGTGGAAATTAAATT+TGG | 0.244297 | 7_1:-37646871 | Msa1017920:CDS |
| TTCCATCAACCATGTGAAAT+TGG | 0.262872 | 7_1:-37646624 | Msa1017920:CDS |
| CCAAAGAGTTGCAGCTAAAA+TGG | 0.273442 | 7_1:-37646688 | Msa1017920:CDS |
| AGAAAGTTTGTGGAGAAATA+TGG | 0.293086 | 7_1:-37646936 | Msa1017920:CDS |
| GAAAGGATAATTTATCTCTA+AGG | 0.312559 | 7_1:+37646710 | None:intergenic |
| CTAATCAGGATGACCCTTAC+AGG | 0.321649 | 7_1:-37645831 | Msa1017920:CDS |
| AATTTCCACTTTGCACCATT+TGG | 0.355722 | 7_1:+37646879 | None:intergenic |
| ATCCTGATTAGGTACTTTGC+AGG | 0.384916 | 7_1:+37645843 | None:intergenic |
| TGGCAAAATATTCTTTGAAA+AGG | 0.391627 | 7_1:-37646838 | Msa1017920:CDS |
| TGGTAATAGACACTTTGATT+TGG | 0.391800 | 7_1:-37645913 | Msa1017920:CDS |
| TTCCAATTTCACATGGTTGA+TGG | 0.398771 | 7_1:+37646622 | None:intergenic |
| CAGAATATACCACGTATGTT+TGG | 0.412403 | 7_1:-37645933 | Msa1017920:CDS |
| AAATATTCTTTGAAAAGGGT+TGG | 0.421071 | 7_1:-37646833 | Msa1017920:CDS |
| GTTTATTTGTTGTTAAATGA+AGG | 0.421453 | 7_1:-37645873 | Msa1017920:CDS |
| GGCCTGCAAAGTACCTAATC+AGG | 0.423211 | 7_1:-37645845 | Msa1017920:CDS |
| GGCAAAATATTCTTTGAAAA+GGG | 0.426542 | 7_1:-37646837 | Msa1017920:CDS |
| CTGTAAGGGTCATCCTGATT+AGG | 0.427523 | 7_1:+37645832 | None:intergenic |
| GATGATACCAAGAAAGTTTG+TGG | 0.432322 | 7_1:-37646946 | Msa1017920:CDS |
| GATCAATTTGTGGTCCTGTA+AGG | 0.446598 | 7_1:+37645817 | None:intergenic |
| GCAGCTAAAATGGTCTCTAA+TGG | 0.456051 | 7_1:-37646678 | Msa1017920:CDS |
| GAAGAAGCTTCTCAAGGATA+AGG | 0.472251 | 7_1:-37645545 | None:intergenic |
| GAGAAGCTTCTTCTTTCACT+TGG | 0.486869 | 7_1:+37645555 | None:intergenic |
| TTTGTGGAGAAATATGGAAA+AGG | 0.487637 | 7_1:-37646930 | Msa1017920:CDS |
| ACTTTGAGATGCTGAACAAT+TGG | 0.487702 | 7_1:+37645662 | None:intergenic |
| TGAAGTTGAGAAATTGCAAA+AGG | 0.487851 | 7_1:-37646586 | Msa1017920:CDS |
| ATATATCTAAAGACTCCAAA+TGG | 0.496307 | 7_1:-37646894 | Msa1017920:CDS |
| TTAAATTTGGTAAATAGTGA+TGG | 0.506736 | 7_1:-37646858 | Msa1017920:CDS |
| AATGAAGGTAAGTATAGTGC+TGG | 0.512079 | 7_1:+37645719 | None:intergenic |
| TCTAAAGATGTGCACAATGA+AGG | 0.513673 | 7_1:+37645704 | None:intergenic |
| GAGGACAATAACTTGAAAGT+TGG | 0.514989 | 7_1:-37645768 | Msa1017920:CDS |
| CCAACTGTGAGATCAATTTG+TGG | 0.524959 | 7_1:+37645807 | None:intergenic |
| TTAGCTGCAACTCTTTGGAA+AGG | 0.537642 | 7_1:+37646693 | None:intergenic |
| CATATCTGAAAAGCACAAGA+TGG | 0.540339 | 7_1:+37646775 | None:intergenic |
| TGCAACTTACCAGACGAAAA+CGG | 0.547167 | 7_1:+37646261 | None:intergenic |
| ATCAATTTGTGGTCCTGTAA+GGG | 0.548089 | 7_1:+37645818 | None:intergenic |
| CGCATGGCAACAACAAAGGA+TGG | 0.550805 | 7_1:+37646302 | None:intergenic |
| CCACAAATTGATCTCACAGT+TGG | 0.558906 | 7_1:-37645807 | Msa1017920:CDS |
| CTATTGCTTCCAATTTCACA+TGG | 0.560323 | 7_1:+37646615 | None:intergenic |
| GAGTATCATTCTCTAGCTCA+TGG | 0.575939 | 7_1:-37646798 | Msa1017920:CDS |
| TTTGATTTGGATAAGAAGAG+AGG | 0.576081 | 7_1:-37645900 | Msa1017920:CDS |
| AAATTGATCTCACAGTTGGA+TGG | 0.578678 | 7_1:-37645803 | Msa1017920:CDS |
| TGGTTGATGGAATTTAAAAG+AGG | 0.579281 | 7_1:+37646635 | None:intergenic |
| AGAAGCTTCTTCTTTCACTT+GGG | 0.579559 | 7_1:+37645556 | None:intergenic |
| GTAGCAACTTTATATCATGC+TGG | 0.590309 | 7_1:-37646564 | Msa1017920:CDS |
| CATGGCTAGTGAAACTTCTG+AGG | 0.608748 | 7_1:-37648146 | Msa1017920:CDS |
| GTGAAAGAAGAAGCTTCTCA+AGG | 0.611713 | 7_1:-37645551 | Msa1017920:CDS |
| AGACTCCAAATGGTGCAAAG+TGG | 0.616755 | 7_1:-37646884 | Msa1017920:CDS |
| TTCAACGTATGATGCACGCA+TGG | 0.638803 | 7_1:+37646286 | None:intergenic |
| TGCACGCATGGCAACAACAA+AGG | 0.639444 | 7_1:+37646298 | None:intergenic |
| TGGATGGAAGACATTTGCAG+AGG | 0.667798 | 7_1:-37645787 | Msa1017920:CDS |
| TGTCTATTACCAAACATACG+TGG | 0.737084 | 7_1:+37645924 | None:intergenic |
| CATGCTGGCAGAGAGTCCAG+AGG | 0.751318 | 7_1:-37646549 | Msa1017920:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAAGGAAAAATAAA+AGG | + | chr7_1:37645898-37645917 | None:intergenic | 10.0% |
| !! | TCAGAAAGAAATAAAAATTA+AGG | + | chr7_1:37645910-37645929 | None:intergenic | 15.0% |
| !! | TATAATTAAAAAAATGCACA+TGG | - | chr7_1:37645991-37646010 | Msa1017920:intron | 15.0% |
| !! | ATATATATTGGAATATCAAA+TGG | - | chr7_1:37647544-37647563 | Msa1017920:intron | 15.0% |
| !!! | GACAATTTTTTTTCTTCAAA+GGG | - | chr7_1:37646042-37646061 | Msa1017920:intron | 20.0% |
| !! | ACTATGATATGTGTATTTAT+GGG | + | chr7_1:37646190-37646209 | None:intergenic | 20.0% |
| !! | AACTATGATATGTGTATTTA+TGG | + | chr7_1:37646191-37646210 | None:intergenic | 20.0% |
| !!! | TATCAGATGTACTTTTTTTT+TGG | - | chr7_1:37646214-37646233 | Msa1017920:intron | 20.0% |
| !!! | ATCAGATGTACTTTTTTTTT+GGG | - | chr7_1:37646215-37646234 | Msa1017920:intron | 20.0% |
| !! | AATTCACTAAGTTATTATTG+TGG | - | chr7_1:37646650-37646669 | Msa1017920:CDS | 20.0% |
| !! | TTATATCATGCATACTAATT+TGG | - | chr7_1:37646710-37646729 | Msa1017920:CDS | 20.0% |
| !! | TTAAATTTGGTAAATAGTGA+TGG | - | chr7_1:37646834-37646853 | Msa1017920:CDS | 20.0% |
| !! | AAAAATTAGAAAGTTCTTGT+TGG | + | chr7_1:37647707-37647726 | None:intergenic | 20.0% |
| !!! | GTTTATTTGTTGTTAAATGA+AGG | - | chr7_1:37647819-37647838 | Msa1017920:intron | 20.0% |
| ! | ATTATCTTGAAAAAGTGGAT+TGG | + | chr7_1:37645577-37645596 | None:intergenic | 25.0% |
| ! | CAAGTATTATCTTGAAAAAG+TGG | + | chr7_1:37645582-37645601 | None:intergenic | 25.0% |
| ! | AAATCGTGTGACATAATAAA+AGG | + | chr7_1:37645755-37645774 | None:intergenic | 25.0% |
| ! | GAAAAATAAAAGGTTCAAAG+TGG | + | chr7_1:37645888-37645907 | None:intergenic | 25.0% |
| ! | AAACCAACAAGTAATTAACT+TGG | - | chr7_1:37645935-37645954 | Msa1017920:intron | 25.0% |
| ! | AACCAACAAGTAATTAACTT+GGG | - | chr7_1:37645936-37645955 | Msa1017920:intron | 25.0% |
| !! | AATTAACTTGGGTAAGATAT+TGG | - | chr7_1:37645947-37645966 | Msa1017920:intron | 25.0% |
| !!! | GCATATGAGTTTTATTTTTG+TGG | - | chr7_1:37646020-37646039 | Msa1017920:intron | 25.0% |
| !!! | GGACAATTTTTTTTCTTCAA+AGG | - | chr7_1:37646041-37646060 | Msa1017920:intron | 25.0% |
| !! | TGTAATTAAGAATTCGAGTT+TGG | - | chr7_1:37646069-37646088 | Msa1017920:intron | 25.0% |
| ! | CTATGATATGTGTATTTATG+GGG | + | chr7_1:37646189-37646208 | None:intergenic | 25.0% |
| ! | AGAAACGTTCAAAAAACTAT+GGG | - | chr7_1:37646309-37646328 | Msa1017920:CDS | 25.0% |
| ! | TCTAACTTAGTTATCAAATC+AGG | + | chr7_1:37646393-37646412 | None:intergenic | 25.0% |
| ! | ATATATCTAAAGACTCCAAA+TGG | - | chr7_1:37646798-37646817 | Msa1017920:CDS | 25.0% |
| ! | TGCAAAGTGGAAATTAAATT+TGG | - | chr7_1:37646821-37646840 | Msa1017920:CDS | 25.0% |
| !! | TGGCAAAATATTCTTTGAAA+AGG | - | chr7_1:37646854-37646873 | Msa1017920:CDS | 25.0% |
| !! | GGCAAAATATTCTTTGAAAA+GGG | - | chr7_1:37646855-37646874 | Msa1017920:CDS | 25.0% |
| !! | AAATATTCTTTGAAAAGGGT+TGG | - | chr7_1:37646859-37646878 | Msa1017920:CDS | 25.0% |
| !! | TGAAAAAACATCTCTTTTTG+AGG | - | chr7_1:37646938-37646957 | Msa1017920:CDS | 25.0% |
| ! | GAAAGGATAATTTATCTCTA+AGG | + | chr7_1:37646985-37647004 | None:intergenic | 25.0% |
| ! | TGTTAACATAAATCTTTAGC+AGG | - | chr7_1:37647230-37647249 | Msa1017920:intron | 25.0% |
| ! | TGCAAAATTTGAACACAATA+AGG | + | chr7_1:37647298-37647317 | None:intergenic | 25.0% |
| !! | TTATTGTGTTCAAATTTTGC+AGG | - | chr7_1:37647297-37647316 | Msa1017920:intron | 25.0% |
| ! | TATATTGGAATATCAAATGG+AGG | - | chr7_1:37647547-37647566 | Msa1017920:intron | 25.0% |
| ! | ATATTGGAATATCAAATGGA+GGG | - | chr7_1:37647548-37647567 | Msa1017920:intron | 25.0% |
| ! | TATCTGATTGGATAATTGTT+AGG | + | chr7_1:37647575-37647594 | None:intergenic | 25.0% |
| ! | ATCATCACATAGATGTTTAT+TGG | - | chr7_1:37647594-37647613 | Msa1017920:intron | 25.0% |
| !! | CATTTGTCTTTTCTTTTGAT+TGG | - | chr7_1:37647736-37647755 | Msa1017920:intron | 25.0% |
| ! | TGTTGTTAAATGAAGGAATT+TGG | - | chr7_1:37647826-37647845 | Msa1017920:intron | 25.0% |
| AATAAGAGAATCCAAGTCAA+AGG | + | chr7_1:37645636-37645655 | None:intergenic | 30.0% | |
| TTGAGTTAGATTCTTTGTTC+AGG | - | chr7_1:37645669-37645688 | Msa1017920:CDS | 30.0% | |
| AAGATTGTCACAAGATTTGT+TGG | - | chr7_1:37645809-37645828 | Msa1017920:CDS | 30.0% | |
| ! | ATTTGTTGGTCATAGTTTGT+GGG | - | chr7_1:37645823-37645842 | Msa1017920:CDS | 30.0% |
| TACCCAAGTTAATTACTTGT+TGG | + | chr7_1:37645941-37645960 | None:intergenic | 30.0% | |
| ATTGGACAAGAATGACATAT+TGG | - | chr7_1:37645965-37645984 | Msa1017920:intron | 30.0% | |
| ! | TCCACTAATGTGTTTTATGA+TGG | - | chr7_1:37646092-37646111 | Msa1017920:intron | 30.0% |
| ACCATCATAAAACACATTAG+TGG | + | chr7_1:37646096-37646115 | None:intergenic | 30.0% | |
| GTTTCATTAGGCTACATATT+TGG | + | chr7_1:37646127-37646146 | None:intergenic | 30.0% | |
| ATATGTAGCCTAATGAAACT+AGG | - | chr7_1:37646128-37646147 | Msa1017920:intron | 30.0% | |
| TATGTAGCCTAATGAAACTA+GGG | - | chr7_1:37646129-37646148 | Msa1017920:intron | 30.0% | |
| GAGAAACGTTCAAAAAACTA+TGG | - | chr7_1:37646308-37646327 | Msa1017920:CDS | 30.0% | |
| ! | GTATTTTCGGTATTTCAGTT+GGG | - | chr7_1:37646597-37646616 | Msa1017920:CDS | 30.0% |
| TATTTCTCCACAAACTTTCT+TGG | + | chr7_1:37646756-37646775 | None:intergenic | 30.0% | |
| AGAAAGTTTGTGGAGAAATA+TGG | - | chr7_1:37646756-37646775 | Msa1017920:CDS | 30.0% | |
| TTTGTGGAGAAATATGGAAA+AGG | - | chr7_1:37646762-37646781 | Msa1017920:CDS | 30.0% | |
| !! | TGGTTGATGGAATTTAAAAG+AGG | + | chr7_1:37647060-37647079 | None:intergenic | 30.0% |
| TGAAGTTGAGAAATTGCAAA+AGG | - | chr7_1:37647106-37647125 | Msa1017920:intron | 30.0% | |
| GTAAGTTGCAAAGAAACATT+TGG | - | chr7_1:37647444-37647463 | Msa1017920:intron | 30.0% | |
| AAGGGGTGAGAAATATATAT+TGG | - | chr7_1:37647532-37647551 | Msa1017920:intron | 30.0% | |
| TCTATGTGATGATATCTGAT+TGG | + | chr7_1:37647587-37647606 | None:intergenic | 30.0% | |
| TGGTAATAGACACTTTGATT+TGG | - | chr7_1:37647779-37647798 | Msa1017920:intron | 30.0% | |
| !! | TTTGATTTGGATAAGAAGAG+AGG | - | chr7_1:37647792-37647811 | Msa1017920:intron | 30.0% |
| !! | GATTTGTTGGTCATAGTTTG+TGG | - | chr7_1:37645822-37645841 | Msa1017920:CDS | 35.0% |
| TCATTAGGCTACATATTTGG+TGG | + | chr7_1:37646124-37646143 | None:intergenic | 35.0% | |
| !! | TTTTTGGGAAAATGCACATG+CGG | - | chr7_1:37646230-37646249 | Msa1017920:intron | 35.0% |
| TAACTACCGGATGTCTATTT+AGG | - | chr7_1:37646257-37646276 | Msa1017920:intron | 35.0% | |
| AACTACCGGATGTCTATTTA+GGG | - | chr7_1:37646258-37646277 | Msa1017920:intron | 35.0% | |
| TTAGGGGAAGTTAGTGATAT+TGG | - | chr7_1:37646275-37646294 | Msa1017920:CDS | 35.0% | |
| TAGGGGAAGTTAGTGATATT+GGG | - | chr7_1:37646276-37646295 | Msa1017920:CDS | 35.0% | |
| ACTTAGTTATCAAATCAGGC+CGG | + | chr7_1:37646389-37646408 | None:intergenic | 35.0% | |
| TTGCGTTACTTAACTAACAC+AGG | - | chr7_1:37646573-37646592 | Msa1017920:CDS | 35.0% | |
| TGCGTTACTTAACTAACACA+GGG | - | chr7_1:37646574-37646593 | Msa1017920:CDS | 35.0% | |
| !!! | AACTAACACAGGGGTATTTT+CGG | - | chr7_1:37646584-37646603 | Msa1017920:CDS | 35.0% |
| ! | GGTATTTTCGGTATTTCAGT+TGG | - | chr7_1:37646596-37646615 | Msa1017920:CDS | 35.0% |
| GATGATACCAAGAAAGTTTG+TGG | - | chr7_1:37646746-37646765 | Msa1017920:CDS | 35.0% | |
| AATTTCCACTTTGCACCATT+TGG | + | chr7_1:37646816-37646835 | None:intergenic | 35.0% | |
| ! | CATATCTGAAAAGCACAAGA+TGG | + | chr7_1:37646920-37646939 | None:intergenic | 35.0% |
| TTCCATCAACCATGTGAAAT+TGG | - | chr7_1:37647068-37647087 | Msa1017920:intron | 35.0% | |
| TTCCAATTTCACATGGTTGA+TGG | + | chr7_1:37647073-37647092 | None:intergenic | 35.0% | |
| CTATTGCTTCCAATTTCACA+TGG | + | chr7_1:37647080-37647099 | None:intergenic | 35.0% | |
| GTAGCAACTTTATATCATGC+TGG | - | chr7_1:37647128-37647147 | Msa1017920:intron | 35.0% | |
| GACACAAAATTGTATACCTC+TGG | + | chr7_1:37647162-37647181 | None:intergenic | 35.0% | |
| ! | GTTGTAATTTTCTCAGCAGT+AGG | + | chr7_1:37647336-37647355 | None:intergenic | 35.0% |
| TGGTAAAGACGAGAAAGAAT+TGG | + | chr7_1:37647508-37647527 | None:intergenic | 35.0% | |
| TTCTCGTCTTTACCAGATTA+AGG | - | chr7_1:37647513-37647532 | Msa1017920:intron | 35.0% | |
| TCTCGTCTTTACCAGATTAA+GGG | - | chr7_1:37647514-37647533 | Msa1017920:intron | 35.0% | |
| ATATTTCTCACCCCTTAATC+TGG | + | chr7_1:37647528-37647547 | None:intergenic | 35.0% | |
| CAGAATATACCACGTATGTT+TGG | - | chr7_1:37647759-37647778 | Msa1017920:intron | 35.0% | |
| TGTCTATTACCAAACATACG+TGG | + | chr7_1:37647771-37647790 | None:intergenic | 35.0% | |
| ATCAATTTGTGGTCCTGTAA+GGG | + | chr7_1:37647877-37647896 | None:intergenic | 35.0% | |
| AAATTGATCTCACAGTTGGA+TGG | - | chr7_1:37647889-37647908 | Msa1017920:intron | 35.0% | |
| GAGGACAATAACTTGAAAGT+TGG | - | chr7_1:37647924-37647943 | Msa1017920:intron | 35.0% | |
| AATGAAGGTAAGTATAGTGC+TGG | + | chr7_1:37647976-37647995 | None:intergenic | 35.0% | |
| TCTAAAGATGTGCACAATGA+AGG | + | chr7_1:37647991-37648010 | None:intergenic | 35.0% | |
| !! | ACTTTGAGATGCTGAACAAT+TGG | + | chr7_1:37648033-37648052 | None:intergenic | 35.0% |
| ATTGTTCAGCATCTCAAAGT+AGG | - | chr7_1:37648033-37648052 | Msa1017920:intron | 35.0% | |
| AGAAGCTTCTTCTTTCACTT+GGG | + | chr7_1:37648139-37648158 | None:intergenic | 35.0% | |
| AAGCTTGTAAGCCTTTGACT+TGG | - | chr7_1:37645622-37645641 | Msa1017920:intron | 40.0% | |
| GTAGCGACATAGATGAGTAA+AGG | + | chr7_1:37645861-37645880 | None:intergenic | 40.0% | |
| TACTCATCTATGTCGCTACA+TGG | - | chr7_1:37645862-37645881 | Msa1017920:CDS | 40.0% | |
| AGAAACGCCCTAGTTTCATT+AGG | + | chr7_1:37646139-37646158 | None:intergenic | 40.0% | |
| ACTACCGGATGTCTATTTAG+GGG | - | chr7_1:37646259-37646278 | Msa1017920:intron | 40.0% | |
| ACTTCCCCTAAATAGACATC+CGG | + | chr7_1:37646266-37646285 | None:intergenic | 40.0% | |
| AGGGGAAGTTAGTGATATTG+GGG | - | chr7_1:37646277-37646296 | Msa1017920:CDS | 40.0% | |
| ACGTTCAAAAAACTATGGGC+TGG | - | chr7_1:37646313-37646332 | Msa1017920:CDS | 40.0% | |
| !! | TTGGCTTGGACAAGTTAGTT+CGG | - | chr7_1:37646363-37646382 | Msa1017920:CDS | 40.0% |
| !! | GTATTTTGGGAAGTCCAGTT+GGG | + | chr7_1:37646449-37646468 | None:intergenic | 40.0% |
| GCGTTACTTAACTAACACAG+GGG | - | chr7_1:37646575-37646594 | Msa1017920:CDS | 40.0% | |
| ! | GAGTATCATTCTCTAGCTCA+TGG | - | chr7_1:37646894-37646913 | Msa1017920:CDS | 40.0% |
| ! | TTAGCTGCAACTCTTTGGAA+AGG | + | chr7_1:37647002-37647021 | None:intergenic | 40.0% |
| !!! | CCATTTTAGCTGCAACTCTT+TGG | + | chr7_1:37647007-37647026 | None:intergenic | 40.0% |
| CCAAAGAGTTGCAGCTAAAA+TGG | - | chr7_1:37647004-37647023 | Msa1017920:intron | 40.0% | |
| GCAGCTAAAATGGTCTCTAA+TGG | - | chr7_1:37647014-37647033 | Msa1017920:intron | 40.0% | |
| TGCAACTTACCAGACGAAAA+CGG | + | chr7_1:37647434-37647453 | None:intergenic | 40.0% | |
| CTCGTCTTTACCAGATTAAG+GGG | - | chr7_1:37647515-37647534 | Msa1017920:intron | 40.0% | |
| ATCCTGATTAGGTACTTTGC+AGG | + | chr7_1:37647852-37647871 | None:intergenic | 40.0% | |
| GATCAATTTGTGGTCCTGTA+AGG | + | chr7_1:37647878-37647897 | None:intergenic | 40.0% | |
| CCAACTGTGAGATCAATTTG+TGG | + | chr7_1:37647888-37647907 | None:intergenic | 40.0% | |
| CCACAAATTGATCTCACAGT+TGG | - | chr7_1:37647885-37647904 | Msa1017920:intron | 40.0% | |
| GAGAAGCTTCTTCTTTCACT+TGG | + | chr7_1:37648140-37648159 | None:intergenic | 40.0% | |
| GTGAAAGAAGAAGCTTCTCA+AGG | - | chr7_1:37648141-37648160 | Msa1017920:CDS | 40.0% | |
| ! | GTTGGTCATAGTTTGTGGGT+CGG | - | chr7_1:37645827-37645846 | Msa1017920:CDS | 45.0% |
| AAGCCCCCTCAATATCTCTA+AGG | - | chr7_1:37646163-37646182 | Msa1017920:intron | 45.0% | |
| TGGGGCCTTAGAGATATTGA+GGG | + | chr7_1:37646171-37646190 | None:intergenic | 45.0% | |
| ATGGGGCCTTAGAGATATTG+AGG | + | chr7_1:37646172-37646191 | None:intergenic | 45.0% | |
| CACATGCGGTAGATAACTAC+CGG | - | chr7_1:37646244-37646263 | Msa1017920:intron | 45.0% | |
| GGGGAAGTTAGTGATATTGG+GGG | - | chr7_1:37646278-37646297 | Msa1017920:CDS | 45.0% | |
| GGGAAGTTAGTGATATTGGG+GGG | - | chr7_1:37646279-37646298 | Msa1017920:CDS | 45.0% | |
| GTGCAGCCTGTTTACTCATT+CGG | - | chr7_1:37646335-37646354 | Msa1017920:CDS | 45.0% | |
| ! | CTAACTTGTCCAAGCCAAGT+GGG | + | chr7_1:37646361-37646380 | None:intergenic | 45.0% |
| ! | ACTAACTTGTCCAAGCCAAG+TGG | + | chr7_1:37646362-37646381 | None:intergenic | 45.0% |
| !! | GGTATTTTGGGAAGTCCAGT+TGG | + | chr7_1:37646450-37646469 | None:intergenic | 45.0% |
| !!! | AACTCACGCAGGGGTATTTT+GGG | + | chr7_1:37646462-37646481 | None:intergenic | 45.0% |
| !!! | TAACTCACGCAGGGGTATTT+TGG | + | chr7_1:37646463-37646482 | None:intergenic | 45.0% |
| TGCATGAGTTAACTCACGCA+GGG | + | chr7_1:37646472-37646491 | None:intergenic | 45.0% | |
| AGACTCCAAATGGTGCAAAG+TGG | - | chr7_1:37646808-37646827 | Msa1017920:CDS | 45.0% | |
| TTCAACGTATGATGCACGCA+TGG | + | chr7_1:37647409-37647428 | None:intergenic | 45.0% | |
| CTGTAAGGGTCATCCTGATT+AGG | + | chr7_1:37647863-37647882 | None:intergenic | 45.0% | |
| CTAATCAGGATGACCCTTAC+AGG | - | chr7_1:37647861-37647880 | Msa1017920:intron | 45.0% | |
| TGGATGGAAGACATTTGCAG+AGG | - | chr7_1:37647905-37647924 | Msa1017920:intron | 45.0% | |
| GGGCCTTAGAGATATTGAGG+GGG | + | chr7_1:37646169-37646188 | None:intergenic | 50.0% | |
| GGGGCCTTAGAGATATTGAG+GGG | + | chr7_1:37646170-37646189 | None:intergenic | 50.0% | |
| AGTGGGCCGAATGAGTAAAC+AGG | + | chr7_1:37646344-37646363 | None:intergenic | 50.0% | |
| GTTTACTCATTCGGCCCACT+TGG | - | chr7_1:37646344-37646363 | Msa1017920:CDS | 50.0% | |
| CTTGGACAAGTTAGTTCGGC+CGG | - | chr7_1:37646367-37646386 | Msa1017920:CDS | 50.0% | |
| GGGAGCGAGCAATAACTGTT+GGG | + | chr7_1:37646429-37646448 | None:intergenic | 50.0% | |
| TGGGAGCGAGCAATAACTGT+TGG | + | chr7_1:37646430-37646449 | None:intergenic | 50.0% | |
| AGTTATTGCTCGCTCCCAAC+TGG | - | chr7_1:37646432-37646451 | Msa1017920:intron | 50.0% | |
| GCATGAGTTAACTCACGCAG+GGG | + | chr7_1:37646471-37646490 | None:intergenic | 50.0% | |
| CTGCATGAGTTAACTCACGC+AGG | + | chr7_1:37646473-37646492 | None:intergenic | 50.0% | |
| CTGCGTAACTTAACTCACGC+TGG | + | chr7_1:37646524-37646543 | None:intergenic | 50.0% | |
| CGCATGGCAACAACAAAGGA+TGG | + | chr7_1:37647393-37647412 | None:intergenic | 50.0% | |
| TGCACGCATGGCAACAACAA+AGG | + | chr7_1:37647397-37647416 | None:intergenic | 50.0% | |
| ! | CGTTGAACACCGTTTTCGTC+TGG | - | chr7_1:37647422-37647441 | Msa1017920:intron | 50.0% |
| ! | GGCCTGCAAAGTACCTAATC+AGG | - | chr7_1:37647847-37647866 | Msa1017920:intron | 50.0% |
| TGGGCGCAAGCGAAATGTGT+TGG | - | chr7_1:37646616-37646635 | Msa1017920:CDS | 55.0% | |
| GGGCGCAAGCGAAATGTGTT+GGG | - | chr7_1:37646617-37646636 | Msa1017920:CDS | 55.0% | |
| CTCATTCGGCCCACTTGGCT+TGG | - | chr7_1:37646349-37646368 | Msa1017920:CDS | 60.0% | |
| CATGCTGGCAGAGAGTCCAG+AGG | - | chr7_1:37647143-37647162 | Msa1017920:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 37645547 | 37648167 | 37645547 | ID=Msa1017920;Name=Msa1017920 |
| chr7_1 | mRNA | 37645547 | 37648167 | 37645547 | ID=Msa1017920-mRNA-1;Parent=Msa1017920;Name=Msa1017920-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0|0|0.8|1|1|5|0|316 |
| chr7_1 | exon | 37648087 | 37648167 | 37648087 | ID=Msa1017920-mRNA-1:exon:7251;Parent=Msa1017920-mRNA-1 |
| chr7_1 | exon | 37646550 | 37646967 | 37646550 | ID=Msa1017920-mRNA-1:exon:7250;Parent=Msa1017920-mRNA-1 |
| chr7_1 | exon | 37646271 | 37646395 | 37646271 | ID=Msa1017920-mRNA-1:exon:7249;Parent=Msa1017920-mRNA-1 |
| chr7_1 | exon | 37645664 | 37645952 | 37645664 | ID=Msa1017920-mRNA-1:exon:7248;Parent=Msa1017920-mRNA-1 |
| chr7_1 | exon | 37645547 | 37645584 | 37645547 | ID=Msa1017920-mRNA-1:exon:7247;Parent=Msa1017920-mRNA-1 |
| chr7_1 | CDS | 37648087 | 37648167 | 37648087 | ID=Msa1017920-mRNA-1:cds;Parent=Msa1017920-mRNA-1 |
| chr7_1 | CDS | 37646550 | 37646967 | 37646550 | ID=Msa1017920-mRNA-1:cds;Parent=Msa1017920-mRNA-1 |
| chr7_1 | CDS | 37646271 | 37646395 | 37646271 | ID=Msa1017920-mRNA-1:cds;Parent=Msa1017920-mRNA-1 |
| chr7_1 | CDS | 37645664 | 37645952 | 37645664 | ID=Msa1017920-mRNA-1:cds;Parent=Msa1017920-mRNA-1 |
| chr7_1 | CDS | 37645547 | 37645584 | 37645547 | ID=Msa1017920-mRNA-1:cds;Parent=Msa1017920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
