Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017930 | RHN45637.1 | 82.206 | 281 | 35 | 4 | 1 | 267 | 1 | 280 | 9.02e-162 | 460 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017930 | sp|Q9ZSH7|Y4158_ARATH | 43.182 | 88 | 44 | 1 | 2 | 83 | 46 | 133 | 8.97e-15 | 73.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017930 | A0A396H3W8 | 82.206 | 281 | 35 | 4 | 1 | 267 | 1 | 280 | 4.31e-162 | 460 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1017930 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017930 | MtrunA17_Chr7g0233521 | 82.206 | 281 | 35 | 4 | 1 | 267 | 1 | 280 | 8.30e-166 | 460 |
| Msa1017930 | MtrunA17_Chr7g0233541 | 69.799 | 298 | 58 | 7 | 1 | 267 | 1 | 297 | 2.29e-139 | 394 |
| Msa1017930 | MtrunA17_Chr7g0233561 | 61.409 | 298 | 81 | 8 | 2 | 267 | 34 | 329 | 7.86e-115 | 333 |
| Msa1017930 | MtrunA17_Chr3g0131891 | 60.870 | 299 | 73 | 10 | 1 | 267 | 34 | 320 | 4.48e-109 | 318 |
| Msa1017930 | MtrunA17_Chr7g0233531 | 59.122 | 296 | 76 | 8 | 1 | 267 | 1 | 280 | 9.20e-104 | 303 |
| Msa1017930 | MtrunA17_Chr7g0233571 | 61.979 | 192 | 50 | 2 | 1 | 169 | 25 | 216 | 2.66e-78 | 236 |
| Msa1017930 | MtrunA17_Chr8g0390841 | 34.146 | 287 | 139 | 8 | 2 | 249 | 55 | 330 | 2.01e-39 | 143 |
| Msa1017930 | MtrunA17_Chr1g0208771 | 31.741 | 293 | 139 | 10 | 2 | 249 | 13 | 289 | 2.00e-38 | 140 |
| Msa1017930 | MtrunA17_Chr1g0163071 | 31.987 | 297 | 143 | 8 | 1 | 249 | 1 | 286 | 5.07e-36 | 130 |
| Msa1017930 | MtrunA17_Chr3g0103181 | 31.387 | 274 | 142 | 11 | 2 | 249 | 26 | 279 | 1.37e-30 | 115 |
| Msa1017930 | MtrunA17_Chr1g0163181 | 30.909 | 275 | 158 | 8 | 2 | 248 | 21 | 291 | 1.06e-26 | 107 |
| Msa1017930 | MtrunA17_Chr1g0163251 | 31.203 | 266 | 156 | 10 | 2 | 248 | 21 | 278 | 4.42e-26 | 105 |
| Msa1017930 | MtrunA17_Chr3g0103171 | 28.114 | 281 | 150 | 10 | 1 | 249 | 5 | 265 | 4.31e-25 | 100 |
| Msa1017930 | MtrunA17_Chr3g0077451 | 26.692 | 266 | 141 | 9 | 2 | 253 | 12 | 237 | 2.37e-21 | 89.7 |
| Msa1017930 | MtrunA17_Chr1g0163261 | 30.035 | 283 | 136 | 11 | 2 | 248 | 25 | 281 | 3.12e-21 | 90.9 |
| Msa1017930 | MtrunA17_Chr3g0103151 | 48.193 | 83 | 37 | 1 | 2 | 78 | 26 | 108 | 7.29e-21 | 86.7 |
| Msa1017930 | MtrunA17_Chr5g0429931 | 27.170 | 265 | 150 | 7 | 2 | 253 | 11 | 245 | 1.09e-20 | 88.2 |
| Msa1017930 | MtrunA17_Chr1g0163201 | 28.521 | 284 | 147 | 11 | 2 | 248 | 19 | 283 | 4.89e-20 | 88.6 |
| Msa1017930 | MtrunA17_Chr3g0103191 | 30.412 | 194 | 92 | 5 | 1 | 168 | 25 | 201 | 9.60e-20 | 85.9 |
| Msa1017930 | MtrunA17_Chr1g0171611 | 27.985 | 268 | 145 | 8 | 2 | 248 | 25 | 265 | 1.14e-19 | 86.3 |
| Msa1017930 | MtrunA17_Chr1g0163231 | 28.777 | 278 | 142 | 13 | 2 | 248 | 25 | 277 | 1.75e-19 | 85.9 |
| Msa1017930 | MtrunA17_Chr3g0077411 | 27.444 | 266 | 156 | 8 | 2 | 253 | 278 | 520 | 1.12e-18 | 85.1 |
| Msa1017930 | MtrunA17_Chr3g0077411 | 33.721 | 86 | 51 | 1 | 2 | 81 | 41 | 126 | 2.48e-12 | 66.6 |
| Msa1017930 | MtrunA17_Chr5g0419201 | 41.667 | 84 | 43 | 1 | 1 | 78 | 31 | 114 | 1.81e-18 | 80.9 |
| Msa1017930 | MtrunA17_Chr1g0154131 | 26.882 | 279 | 176 | 8 | 2 | 254 | 198 | 474 | 3.28e-18 | 84.0 |
| Msa1017930 | MtrunA17_Chr1g0163131 | 28.028 | 289 | 147 | 11 | 1 | 246 | 33 | 303 | 4.42e-16 | 76.6 |
| Msa1017930 | MtrunA17_Chr1g0163241 | 44.578 | 83 | 38 | 2 | 2 | 78 | 23 | 103 | 2.62e-15 | 71.6 |
| Msa1017930 | MtrunA17_Chr3g0103201 | 26.957 | 230 | 137 | 8 | 41 | 249 | 1 | 220 | 2.98e-15 | 72.8 |
| Msa1017930 | MtrunA17_Chr1g0163221 | 26.715 | 277 | 163 | 11 | 2 | 250 | 27 | 291 | 3.28e-15 | 74.3 |
| Msa1017930 | MtrunA17_Chr1g0163191 | 42.169 | 83 | 40 | 2 | 2 | 78 | 21 | 101 | 3.52e-14 | 68.6 |
| Msa1017930 | MtrunA17_Chr4g0033961 | 39.326 | 89 | 46 | 2 | 2 | 82 | 22 | 110 | 6.01e-14 | 71.2 |
| Msa1017930 | MtrunA17_Chr1g0163121 | 37.705 | 122 | 57 | 4 | 1 | 116 | 10 | 118 | 1.00e-13 | 67.0 |
| Msa1017930 | MtrunA17_Chr3g0077431 | 26.471 | 238 | 121 | 9 | 30 | 253 | 1 | 198 | 2.43e-13 | 67.0 |
| Msa1017930 | MtrunA17_Chr1g0163101 | 36.885 | 122 | 59 | 4 | 1 | 116 | 32 | 141 | 1.16e-12 | 65.1 |
| Msa1017930 | MtrunA17_Chr3g0077461 | 33.721 | 86 | 51 | 1 | 2 | 81 | 23 | 108 | 1.53e-12 | 67.0 |
| Msa1017930 | MtrunA17_Chr3g0077461 | 24.016 | 254 | 132 | 9 | 2 | 241 | 253 | 459 | 7.85e-12 | 65.1 |
| Msa1017930 | MtrunA17_Chr1g0162441 | 36.145 | 83 | 47 | 1 | 2 | 78 | 23 | 105 | 1.72e-12 | 67.0 |
| Msa1017930 | MtrunA17_Chr3g0077381 | 28.448 | 116 | 72 | 2 | 2 | 106 | 36 | 151 | 3.40e-12 | 65.9 |
| Msa1017930 | MtrunA17_Chr4g0009491 | 28.440 | 109 | 67 | 2 | 2 | 99 | 13 | 121 | 4.79e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017930 | AT4G01580.1 | 43.182 | 88 | 44 | 1 | 2 | 83 | 46 | 133 | 9.11e-16 | 73.9 |
| Msa1017930 | AT3G18990.1 | 43.373 | 83 | 41 | 1 | 2 | 78 | 22 | 104 | 3.28e-15 | 74.7 |
| Msa1017930 | AT3G18990.2 | 43.373 | 83 | 41 | 1 | 2 | 78 | 22 | 104 | 3.85e-15 | 74.7 |
| Msa1017930 | AT3G18960.2 | 42.045 | 88 | 45 | 1 | 2 | 83 | 46 | 133 | 5.03e-15 | 72.0 |
| Msa1017930 | AT3G18960.1 | 42.045 | 88 | 45 | 1 | 2 | 83 | 46 | 133 | 5.27e-15 | 72.4 |
| Msa1017930 | AT3G18960.3 | 42.045 | 88 | 45 | 1 | 2 | 83 | 9 | 96 | 7.52e-15 | 71.2 |
| Msa1017930 | AT1G49475.1 | 41.860 | 86 | 43 | 2 | 2 | 81 | 50 | 134 | 1.20e-14 | 70.9 |
Find 43 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCAAAATGTGGTCCTTTA+AGG | 0.160559 | 7_1:-37659017 | None:intergenic |
| TGCAAAATGGAAATTAAATT+TGG | 0.194062 | 7_1:+37658001 | Msa1017930:CDS |
| ACCTTCATTGTTCATATCTT+TGG | 0.205135 | 7_1:+37659129 | Msa1017930:CDS |
| GGAACACCGATTTCTTATTA+TGG | 0.238357 | 7_1:+37658513 | Msa1017930:CDS |
| TATTTCTCGACAAACTTTCT+TGG | 0.256848 | 7_1:-37657933 | None:intergenic |
| AGAAAGTTTGTCGAGAAATA+TGG | 0.293086 | 7_1:+37657936 | Msa1017930:CDS |
| CTAATCAGGATGACCCTTAA+AGG | 0.296784 | 7_1:+37659003 | Msa1017930:CDS |
| GAATGGATAATTTATCTCTA+AGG | 0.305393 | 7_1:-37658162 | None:intergenic |
| CCAAAGAGTTGCAGCTAAAA+AGG | 0.311285 | 7_1:+37658184 | Msa1017930:CDS |
| TTCCATCAACCACGTGAAAT+AGG | 0.327923 | 7_1:+37658248 | Msa1017930:CDS |
| AGACTCCAAATGGTGCAAAA+TGG | 0.337543 | 7_1:+37657988 | Msa1017930:CDS |
| CTTTAAGGGTCATCCTGATT+AGG | 0.351706 | 7_1:-37659002 | None:intergenic |
| TGGTAATAGACACTTTGATT+TGG | 0.391800 | 7_1:+37658938 | Msa1017930:intron |
| GAGAGGAGATGTTTATTTGT+TGG | 0.399176 | 7_1:+37658968 | Msa1017930:CDS |
| ATCCTGATTAGGTACCTTGC+AGG | 0.402742 | 7_1:-37658991 | None:intergenic |
| TTCCTATTTCACGTGGTTGA+TGG | 0.411563 | 7_1:-37658250 | None:intergenic |
| GGCCTGCAAGGTACCTAATC+AGG | 0.418117 | 7_1:+37658989 | Msa1017930:CDS |
| ATCAAAATGTGGTCCTTTAA+GGG | 0.421258 | 7_1:-37659016 | None:intergenic |
| CAGAATATACCACGTTCGTT+TGG | 0.431161 | 7_1:+37658918 | Msa1017930:intron |
| ATTGTTCAACATCTCAAAGT+AGG | 0.457818 | 7_1:+37659175 | Msa1017930:CDS |
| AACTTACCATAATAAGAAAT+CGG | 0.464762 | 7_1:-37658519 | None:intergenic |
| GATATTTGAAAAGCAGAAGA+TGG | 0.469802 | 7_1:-37658097 | None:intergenic |
| TTAAATTTGGTAAATAGTGA+TGG | 0.478699 | 7_1:+37658014 | Msa1017930:CDS |
| TGTTTATTTGTTGGCCTGCA+AGG | 0.480299 | 7_1:+37658977 | Msa1017930:CDS |
| TGAAGTTGAGAAATTGCAAA+AGG | 0.487851 | 7_1:+37658286 | Msa1017930:CDS |
| ATATATCTAAAGACTCCAAA+TGG | 0.494837 | 7_1:+37657978 | Msa1017930:CDS |
| AAGGACAATAACTTGAAAGT+TGG | 0.499244 | 7_1:+37659066 | Msa1017930:CDS |
| TTAGCTGCAACTCTTTGGAA+TGG | 0.508092 | 7_1:-37658179 | None:intergenic |
| TCCAAAGATATGAACAATGA+AGG | 0.510864 | 7_1:-37659130 | None:intergenic |
| CGCATGACAACAACAAAGGA+TGG | 0.548509 | 7_1:-37658478 | None:intergenic |
| TGATATCACAACTGGATGGA+AGG | 0.551592 | 7_1:+37659035 | Msa1017930:CDS |
| CCACGTGAAATAGGAAGCAA+TGG | 0.577300 | 7_1:+37658257 | Msa1017930:CDS |
| GAGCATCACTCTCTAGCTCA+TGG | 0.577825 | 7_1:+37658074 | Msa1017930:CDS |
| TTTGTCGAGAAATATGGAGA+AGG | 0.578412 | 7_1:+37657942 | Msa1017930:CDS |
| GTAGCAACTTTGCATCATGC+TGG | 0.604292 | 7_1:+37658308 | Msa1017930:CDS |
| CCATTGCTTCCTATTTCACG+TGG | 0.606111 | 7_1:-37658257 | None:intergenic |
| TGGTTGATGGAATTCAAAAG+AGG | 0.624709 | 7_1:-37658237 | None:intergenic |
| TGGATGGAAGGCATTTGCAA+AGG | 0.644602 | 7_1:+37659047 | Msa1017930:CDS |
| CCAGTTGTGATATCAAAATG+TGG | 0.655815 | 7_1:-37659027 | None:intergenic |
| TGTCATGCGTGCATCATACG+TGG | 0.677837 | 7_1:+37658492 | Msa1017930:CDS |
| TGCACGCATGACAACAACAA+AGG | 0.693553 | 7_1:-37658482 | None:intergenic |
| CATGCTGGCAGAGAGTCCAA+AGG | 0.714363 | 7_1:+37658323 | Msa1017930:CDS |
| TGTCTATTACCAAACGAACG+TGG | 0.725731 | 7_1:-37658927 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATCACATAAATGTTTAT+TGG | + | chr7_1:37658758-37658777 | Msa1017930:intron | 15.0% |
| !! | ATTATCACATAAATGTTTAT+TGG | + | chr7_1:37658758-37658777 | Msa1017930:intron | 15.0% |
| !! | TGCAAAATGGAAATTAAATT+TGG | + | chr7_1:37658001-37658020 | Msa1017930:CDS | 20.0% |
| !! | TTAAATTTGGTAAATAGTGA+TGG | + | chr7_1:37658014-37658033 | Msa1017930:CDS | 20.0% |
| !!! | TAAATAGTGATGGAAAAATA+TGG | + | chr7_1:37658024-37658043 | Msa1017930:CDS | 20.0% |
| !! | AACTTACCATAATAAGAAAT+CGG | - | chr7_1:37658522-37658541 | None:intergenic | 20.0% |
| !! | TATCTGATTGAATAATTGTT+AGG | - | chr7_1:37658739-37658758 | None:intergenic | 20.0% |
| !! | AAAAATTAGAAAGTTCTTGT+TGG | - | chr7_1:37658867-37658886 | None:intergenic | 20.0% |
| !!! | CATTTATCTTTTCTTTTGAT+TGG | + | chr7_1:37658895-37658914 | Msa1017930:intron | 20.0% |
| !! | TGCAAAATGGAAATTAAATT+TGG | + | chr7_1:37658001-37658020 | Msa1017930:CDS | 20.0% |
| !! | TTAAATTTGGTAAATAGTGA+TGG | + | chr7_1:37658014-37658033 | Msa1017930:CDS | 20.0% |
| !!! | TAAATAGTGATGGAAAAATA+TGG | + | chr7_1:37658024-37658043 | Msa1017930:CDS | 20.0% |
| !! | AACTTACCATAATAAGAAAT+CGG | - | chr7_1:37658522-37658541 | None:intergenic | 20.0% |
| !! | TATCTGATTGAATAATTGTT+AGG | - | chr7_1:37658739-37658758 | None:intergenic | 20.0% |
| !! | AAAAATTAGAAAGTTCTTGT+TGG | - | chr7_1:37658867-37658886 | None:intergenic | 20.0% |
| !!! | CATTTATCTTTTCTTTTGAT+TGG | + | chr7_1:37658895-37658914 | Msa1017930:intron | 20.0% |
| ! | ATATATCTAAAGACTCCAAA+TGG | + | chr7_1:37657978-37657997 | Msa1017930:CDS | 25.0% |
| ! | GGAAAAATATGGTTTGAAAA+AGG | + | chr7_1:37658035-37658054 | Msa1017930:CDS | 25.0% |
| ! | AAATATGGTTTGAAAAAGGT+TGG | + | chr7_1:37658039-37658058 | Msa1017930:CDS | 25.0% |
| ! | GAATGGATAATTTATCTCTA+AGG | - | chr7_1:37658165-37658184 | None:intergenic | 25.0% |
| ! | TGCAAAATTTGAACACAATA+AGG | - | chr7_1:37658389-37658408 | None:intergenic | 25.0% |
| !! | TTATTGTGTTCAAATTTTGC+AGG | + | chr7_1:37658388-37658407 | Msa1017930:intron | 25.0% |
| !! | TATTGTGTTCAAATTTTGCA+GGG | + | chr7_1:37658389-37658408 | Msa1017930:intron | 25.0% |
| !!! | TTTGATTTGGATAAAAAGAG+AGG | + | chr7_1:37658951-37658970 | Msa1017930:CDS | 25.0% |
| ! | ATATATCTAAAGACTCCAAA+TGG | + | chr7_1:37657978-37657997 | Msa1017930:CDS | 25.0% |
| ! | GGAAAAATATGGTTTGAAAA+AGG | + | chr7_1:37658035-37658054 | Msa1017930:CDS | 25.0% |
| ! | AAATATGGTTTGAAAAAGGT+TGG | + | chr7_1:37658039-37658058 | Msa1017930:CDS | 25.0% |
| ! | GAATGGATAATTTATCTCTA+AGG | - | chr7_1:37658165-37658184 | None:intergenic | 25.0% |
| ! | TGCAAAATTTGAACACAATA+AGG | - | chr7_1:37658389-37658408 | None:intergenic | 25.0% |
| !! | TTATTGTGTTCAAATTTTGC+AGG | + | chr7_1:37658388-37658407 | Msa1017930:intron | 25.0% |
| !! | TATTGTGTTCAAATTTTGCA+GGG | + | chr7_1:37658389-37658408 | Msa1017930:intron | 25.0% |
| !!! | TTTGATTTGGATAAAAAGAG+AGG | + | chr7_1:37658951-37658970 | Msa1017930:CDS | 25.0% |
| TATTTCTCGACAAACTTTCT+TGG | - | chr7_1:37657936-37657955 | None:intergenic | 30.0% | |
| AGAAAGTTTGTCGAGAAATA+TGG | + | chr7_1:37657936-37657955 | Msa1017930:CDS | 30.0% | |
| ! | AATTTCCATTTTGCACCATT+TGG | - | chr7_1:37657996-37658015 | None:intergenic | 30.0% |
| GATATTTGAAAAGCAGAAGA+TGG | - | chr7_1:37658100-37658119 | None:intergenic | 30.0% | |
| TGAAGTTGAGAAATTGCAAA+AGG | + | chr7_1:37658286-37658305 | Msa1017930:CDS | 30.0% | |
| GACACAATCTTATATACCTT+TGG | - | chr7_1:37658342-37658361 | None:intergenic | 30.0% | |
| TGGTAATAGACACTTTGATT+TGG | + | chr7_1:37658938-37658957 | Msa1017930:intron | 30.0% | |
| ATCAAAATGTGGTCCTTTAA+GGG | - | chr7_1:37659019-37659038 | None:intergenic | 30.0% | |
| TATCAAAATGTGGTCCTTTA+AGG | - | chr7_1:37659020-37659039 | None:intergenic | 30.0% | |
| !! | ATTTTGATATCACAACTGGA+TGG | + | chr7_1:37659031-37659050 | Msa1017930:CDS | 30.0% |
| AAGGACAATAACTTGAAAGT+TGG | + | chr7_1:37659066-37659085 | Msa1017930:CDS | 30.0% | |
| ACCTTCATTGTTCATATCTT+TGG | + | chr7_1:37659129-37659148 | Msa1017930:CDS | 30.0% | |
| TCCAAAGATATGAACAATGA+AGG | - | chr7_1:37659133-37659152 | None:intergenic | 30.0% | |
| ATTGTTCAACATCTCAAAGT+AGG | + | chr7_1:37659175-37659194 | Msa1017930:CDS | 30.0% | |
| TATTTCTCGACAAACTTTCT+TGG | - | chr7_1:37657936-37657955 | None:intergenic | 30.0% | |
| AGAAAGTTTGTCGAGAAATA+TGG | + | chr7_1:37657936-37657955 | Msa1017930:CDS | 30.0% | |
| ! | AATTTCCATTTTGCACCATT+TGG | - | chr7_1:37657996-37658015 | None:intergenic | 30.0% |
| GATATTTGAAAAGCAGAAGA+TGG | - | chr7_1:37658100-37658119 | None:intergenic | 30.0% | |
| TGAAGTTGAGAAATTGCAAA+AGG | + | chr7_1:37658286-37658305 | Msa1017930:CDS | 30.0% | |
| GACACAATCTTATATACCTT+TGG | - | chr7_1:37658342-37658361 | None:intergenic | 30.0% | |
| TGGTAATAGACACTTTGATT+TGG | + | chr7_1:37658938-37658957 | Msa1017930:intron | 30.0% | |
| ATCAAAATGTGGTCCTTTAA+GGG | - | chr7_1:37659019-37659038 | None:intergenic | 30.0% | |
| TATCAAAATGTGGTCCTTTA+AGG | - | chr7_1:37659020-37659039 | None:intergenic | 30.0% | |
| !! | ATTTTGATATCACAACTGGA+TGG | + | chr7_1:37659031-37659050 | Msa1017930:CDS | 30.0% |
| AAGGACAATAACTTGAAAGT+TGG | + | chr7_1:37659066-37659085 | Msa1017930:CDS | 30.0% | |
| ACCTTCATTGTTCATATCTT+TGG | + | chr7_1:37659129-37659148 | Msa1017930:CDS | 30.0% | |
| TCCAAAGATATGAACAATGA+AGG | - | chr7_1:37659133-37659152 | None:intergenic | 30.0% | |
| ATTGTTCAACATCTCAAAGT+AGG | + | chr7_1:37659175-37659194 | Msa1017930:CDS | 30.0% | |
| TTTGTCGAGAAATATGGAGA+AGG | + | chr7_1:37657942-37657961 | Msa1017930:CDS | 35.0% | |
| ! | AGCTTTTCTCTTTTGACCAT+TGG | - | chr7_1:37658213-37658232 | None:intergenic | 35.0% |
| !! | TGGTTGATGGAATTCAAAAG+AGG | - | chr7_1:37658240-37658259 | None:intergenic | 35.0% |
| !! | GGAACACCGATTTCTTATTA+TGG | + | chr7_1:37658513-37658532 | Msa1017930:CDS | 35.0% |
| GGTAAGTTGCAAAGAAAGTT+TGG | + | chr7_1:37658534-37658553 | Msa1017930:intron | 35.0% | |
| TATTTCCCGTTGATACCAAT+TGG | + | chr7_1:37658674-37658693 | Msa1017930:intron | 35.0% | |
| AAGAACCAATTGGTATCAAC+GGG | - | chr7_1:37658682-37658701 | None:intergenic | 35.0% | |
| CAAGAACCAATTGGTATCAA+CGG | - | chr7_1:37658683-37658702 | None:intergenic | 35.0% | |
| CTTTCTCAACAAGAACCAAT+TGG | - | chr7_1:37658692-37658711 | None:intergenic | 35.0% | |
| AAAGAATTTCCCAGCTCAAA+TGG | + | chr7_1:37658708-37658727 | Msa1017930:intron | 35.0% | |
| GAGAGGAGATGTTTATTTGT+TGG | + | chr7_1:37658968-37658987 | Msa1017930:CDS | 35.0% | |
| CCAGTTGTGATATCAAAATG+TGG | - | chr7_1:37659030-37659049 | None:intergenic | 35.0% | |
| !! | CCACATTTTGATATCACAAC+TGG | + | chr7_1:37659027-37659046 | Msa1017930:CDS | 35.0% |
| TTTGTCGAGAAATATGGAGA+AGG | + | chr7_1:37657942-37657961 | Msa1017930:CDS | 35.0% | |
| ! | AGCTTTTCTCTTTTGACCAT+TGG | - | chr7_1:37658213-37658232 | None:intergenic | 35.0% |
| !! | TGGTTGATGGAATTCAAAAG+AGG | - | chr7_1:37658240-37658259 | None:intergenic | 35.0% |
| !! | GGAACACCGATTTCTTATTA+TGG | + | chr7_1:37658513-37658532 | Msa1017930:CDS | 35.0% |
| GGTAAGTTGCAAAGAAAGTT+TGG | + | chr7_1:37658534-37658553 | Msa1017930:intron | 35.0% | |
| TATTTCCCGTTGATACCAAT+TGG | + | chr7_1:37658674-37658693 | Msa1017930:intron | 35.0% | |
| AAGAACCAATTGGTATCAAC+GGG | - | chr7_1:37658682-37658701 | None:intergenic | 35.0% | |
| CAAGAACCAATTGGTATCAA+CGG | - | chr7_1:37658683-37658702 | None:intergenic | 35.0% | |
| CTTTCTCAACAAGAACCAAT+TGG | - | chr7_1:37658692-37658711 | None:intergenic | 35.0% | |
| AAAGAATTTCCCAGCTCAAA+TGG | + | chr7_1:37658708-37658727 | Msa1017930:intron | 35.0% | |
| GAGAGGAGATGTTTATTTGT+TGG | + | chr7_1:37658968-37658987 | Msa1017930:CDS | 35.0% | |
| CCAGTTGTGATATCAAAATG+TGG | - | chr7_1:37659030-37659049 | None:intergenic | 35.0% | |
| !! | CCACATTTTGATATCACAAC+TGG | + | chr7_1:37659027-37659046 | Msa1017930:CDS | 35.0% |
| AGACTCCAAATGGTGCAAAA+TGG | + | chr7_1:37657988-37658007 | Msa1017930:CDS | 40.0% | |
| ! | TTAGCTGCAACTCTTTGGAA+TGG | - | chr7_1:37658182-37658201 | None:intergenic | 40.0% |
| !!! | CCTTTTTAGCTGCAACTCTT+TGG | - | chr7_1:37658187-37658206 | None:intergenic | 40.0% |
| CCAAAGAGTTGCAGCTAAAA+AGG | + | chr7_1:37658184-37658203 | Msa1017930:CDS | 40.0% | |
| TTCCATCAACCACGTGAAAT+AGG | + | chr7_1:37658248-37658267 | Msa1017930:CDS | 40.0% | |
| TTCCTATTTCACGTGGTTGA+TGG | - | chr7_1:37658253-37658272 | None:intergenic | 40.0% | |
| AATTTCCCAGCTCAAATGGA+GGG | + | chr7_1:37658712-37658731 | Msa1017930:intron | 40.0% | |
| CAGAATATACCACGTTCGTT+TGG | + | chr7_1:37658918-37658937 | Msa1017930:intron | 40.0% | |
| TGTCTATTACCAAACGAACG+TGG | - | chr7_1:37658930-37658949 | None:intergenic | 40.0% | |
| ! | TGTTTATTTGTTGGCCTGCA+AGG | + | chr7_1:37658977-37658996 | Msa1017930:CDS | 40.0% |
| ! | CTTTAAGGGTCATCCTGATT+AGG | - | chr7_1:37659005-37659024 | None:intergenic | 40.0% |
| CTAATCAGGATGACCCTTAA+AGG | + | chr7_1:37659003-37659022 | Msa1017930:CDS | 40.0% | |
| TGATATCACAACTGGATGGA+AGG | + | chr7_1:37659035-37659054 | Msa1017930:CDS | 40.0% | |
| AGACTCCAAATGGTGCAAAA+TGG | + | chr7_1:37657988-37658007 | Msa1017930:CDS | 40.0% | |
| ! | TTAGCTGCAACTCTTTGGAA+TGG | - | chr7_1:37658182-37658201 | None:intergenic | 40.0% |
| !!! | CCTTTTTAGCTGCAACTCTT+TGG | - | chr7_1:37658187-37658206 | None:intergenic | 40.0% |
| CCAAAGAGTTGCAGCTAAAA+AGG | + | chr7_1:37658184-37658203 | Msa1017930:CDS | 40.0% | |
| TTCCATCAACCACGTGAAAT+AGG | + | chr7_1:37658248-37658267 | Msa1017930:CDS | 40.0% | |
| TTCCTATTTCACGTGGTTGA+TGG | - | chr7_1:37658253-37658272 | None:intergenic | 40.0% | |
| AATTTCCCAGCTCAAATGGA+GGG | + | chr7_1:37658712-37658731 | Msa1017930:intron | 40.0% | |
| CAGAATATACCACGTTCGTT+TGG | + | chr7_1:37658918-37658937 | Msa1017930:intron | 40.0% | |
| TGTCTATTACCAAACGAACG+TGG | - | chr7_1:37658930-37658949 | None:intergenic | 40.0% | |
| ! | TGTTTATTTGTTGGCCTGCA+AGG | + | chr7_1:37658977-37658996 | Msa1017930:CDS | 40.0% |
| ! | CTTTAAGGGTCATCCTGATT+AGG | - | chr7_1:37659005-37659024 | None:intergenic | 40.0% |
| CTAATCAGGATGACCCTTAA+AGG | + | chr7_1:37659003-37659022 | Msa1017930:CDS | 40.0% | |
| TGATATCACAACTGGATGGA+AGG | + | chr7_1:37659035-37659054 | Msa1017930:CDS | 40.0% | |
| GCAGCTAAAAAGGTCTCCAA+TGG | + | chr7_1:37658194-37658213 | Msa1017930:CDS | 45.0% | |
| CCATTGCTTCCTATTTCACG+TGG | - | chr7_1:37658260-37658279 | None:intergenic | 45.0% | |
| CCACGTGAAATAGGAAGCAA+TGG | + | chr7_1:37658257-37658276 | Msa1017930:CDS | 45.0% | |
| GTAGCAACTTTGCATCATGC+TGG | + | chr7_1:37658308-37658327 | Msa1017930:CDS | 45.0% | |
| CGCATGACAACAACAAAGGA+TGG | - | chr7_1:37658481-37658500 | None:intergenic | 45.0% | |
| TGCACGCATGACAACAACAA+AGG | - | chr7_1:37658485-37658504 | None:intergenic | 45.0% | |
| ! | CTATACGTATGCACTGACGA+AGG | + | chr7_1:37658566-37658585 | Msa1017930:intron | 45.0% |
| GAATTTCCCAGCTCAAATGG+AGG | + | chr7_1:37658711-37658730 | Msa1017930:intron | 45.0% | |
| ATCCTGATTAGGTACCTTGC+AGG | - | chr7_1:37658994-37659013 | None:intergenic | 45.0% | |
| !! | TGGATGGAAGGCATTTGCAA+AGG | + | chr7_1:37659047-37659066 | Msa1017930:CDS | 45.0% |
| GCAGCTAAAAAGGTCTCCAA+TGG | + | chr7_1:37658194-37658213 | Msa1017930:CDS | 45.0% | |
| CCATTGCTTCCTATTTCACG+TGG | - | chr7_1:37658260-37658279 | None:intergenic | 45.0% | |
| CCACGTGAAATAGGAAGCAA+TGG | + | chr7_1:37658257-37658276 | Msa1017930:CDS | 45.0% | |
| GTAGCAACTTTGCATCATGC+TGG | + | chr7_1:37658308-37658327 | Msa1017930:CDS | 45.0% | |
| CGCATGACAACAACAAAGGA+TGG | - | chr7_1:37658481-37658500 | None:intergenic | 45.0% | |
| TGCACGCATGACAACAACAA+AGG | - | chr7_1:37658485-37658504 | None:intergenic | 45.0% | |
| ! | CTATACGTATGCACTGACGA+AGG | + | chr7_1:37658566-37658585 | Msa1017930:intron | 45.0% |
| GAATTTCCCAGCTCAAATGG+AGG | + | chr7_1:37658711-37658730 | Msa1017930:intron | 45.0% | |
| ATCCTGATTAGGTACCTTGC+AGG | - | chr7_1:37658994-37659013 | None:intergenic | 45.0% | |
| !! | TGGATGGAAGGCATTTGCAA+AGG | + | chr7_1:37659047-37659066 | Msa1017930:CDS | 45.0% |
| !! | TATTAATAGATATATTATAA+TGG | + | chr7_1:37658783-37658802 | Msa1017930:intron | 5.0% |
| !! | TATTAATAGATATATTATAA+TGG | + | chr7_1:37658783-37658802 | Msa1017930:intron | 5.0% |
| ! | GAGCATCACTCTCTAGCTCA+TGG | + | chr7_1:37658074-37658093 | Msa1017930:CDS | 50.0% |
| TGTCATGCGTGCATCATACG+TGG | + | chr7_1:37658492-37658511 | Msa1017930:CDS | 50.0% | |
| TAGGACCCTCCATTTGAGCT+GGG | - | chr7_1:37658720-37658739 | None:intergenic | 50.0% | |
| TTAGGACCCTCCATTTGAGC+TGG | - | chr7_1:37658721-37658740 | None:intergenic | 50.0% | |
| ! | GAGCATCACTCTCTAGCTCA+TGG | + | chr7_1:37658074-37658093 | Msa1017930:CDS | 50.0% |
| TGTCATGCGTGCATCATACG+TGG | + | chr7_1:37658492-37658511 | Msa1017930:CDS | 50.0% | |
| TAGGACCCTCCATTTGAGCT+GGG | - | chr7_1:37658720-37658739 | None:intergenic | 50.0% | |
| TTAGGACCCTCCATTTGAGC+TGG | - | chr7_1:37658721-37658740 | None:intergenic | 50.0% | |
| CATGCTGGCAGAGAGTCCAA+AGG | + | chr7_1:37658323-37658342 | Msa1017930:CDS | 55.0% | |
| ! | GGCCTGCAAGGTACCTAATC+AGG | + | chr7_1:37658989-37659008 | Msa1017930:CDS | 55.0% |
| CATGCTGGCAGAGAGTCCAA+AGG | + | chr7_1:37658323-37658342 | Msa1017930:CDS | 55.0% | |
| ! | GGCCTGCAAGGTACCTAATC+AGG | + | chr7_1:37658989-37659008 | Msa1017930:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 37657927 | 37659206 | 37657927 | ID=Msa1017930;Name=Msa1017930 |
| chr7_1 | mRNA | 37657927 | 37659206 | 37657927 | ID=Msa1017930-mRNA-1;Parent=Msa1017930;Name=Msa1017930-mRNA-1;_AED=0.07;_eAED=0.12;_QI=0|0|0|1|0.5|0.2|5|0|267 |
| chr7_1 | exon | 37657927 | 37658139 | 37657927 | ID=Msa1017930-mRNA-1:exon:7234;Parent=Msa1017930-mRNA-1 |
| chr7_1 | exon | 37658158 | 37658344 | 37658158 | ID=Msa1017930-mRNA-1:exon:7235;Parent=Msa1017930-mRNA-1 |
| chr7_1 | exon | 37658410 | 37658534 | 37658410 | ID=Msa1017930-mRNA-1:exon:7236;Parent=Msa1017930-mRNA-1 |
| chr7_1 | exon | 37658921 | 37658939 | 37658921 | ID=Msa1017930-mRNA-1:exon:7237;Parent=Msa1017930-mRNA-1 |
| chr7_1 | exon | 37658947 | 37659206 | 37658947 | ID=Msa1017930-mRNA-1:exon:7238;Parent=Msa1017930-mRNA-1 |
| chr7_1 | CDS | 37657927 | 37658139 | 37657927 | ID=Msa1017930-mRNA-1:cds;Parent=Msa1017930-mRNA-1 |
| chr7_1 | CDS | 37658158 | 37658344 | 37658158 | ID=Msa1017930-mRNA-1:cds;Parent=Msa1017930-mRNA-1 |
| chr7_1 | CDS | 37658410 | 37658534 | 37658410 | ID=Msa1017930-mRNA-1:cds;Parent=Msa1017930-mRNA-1 |
| chr7_1 | CDS | 37658921 | 37658939 | 37658921 | ID=Msa1017930-mRNA-1:cds;Parent=Msa1017930-mRNA-1 |
| chr7_1 | CDS | 37658947 | 37659206 | 37658947 | ID=Msa1017930-mRNA-1:cds;Parent=Msa1017930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
