Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1018140 | AES78894.2 | 90.596 | 319 | 24 | 1 | 1 | 313 | 1 | 319 | 0.0 | 599 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1018140 | sp|Q8L3W1|VRN1_ARATH | 31.471 | 340 | 169 | 9 | 6 | 297 | 2 | 325 | 9.29e-38 | 140 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1018140 | G7KVW7 | 90.596 | 319 | 24 | 1 | 1 | 313 | 1 | 319 | 0.0 | 599 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1018140 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1018140 | MtrunA17_Chr7g0233571 | 91.855 | 221 | 18 | 0 | 1 | 221 | 1 | 221 | 5.17e-152 | 425 |
| Msa1018140 | MtrunA17_Chr7g0233541 | 63.668 | 289 | 96 | 6 | 25 | 311 | 1 | 282 | 9.90e-127 | 363 |
| Msa1018140 | MtrunA17_Chr3g0131891 | 62.540 | 315 | 98 | 10 | 1 | 311 | 7 | 305 | 2.26e-124 | 359 |
| Msa1018140 | MtrunA17_Chr7g0233561 | 59.355 | 310 | 117 | 7 | 4 | 311 | 12 | 314 | 6.14e-123 | 355 |
| Msa1018140 | MtrunA17_Chr7g0233521 | 60.279 | 287 | 92 | 6 | 25 | 311 | 1 | 265 | 2.86e-116 | 337 |
| Msa1018140 | MtrunA17_Chr7g0233531 | 56.098 | 287 | 104 | 8 | 25 | 311 | 1 | 265 | 6.64e-101 | 297 |
| Msa1018140 | MtrunA17_Chr1g0163071 | 37.086 | 302 | 158 | 7 | 25 | 309 | 1 | 287 | 6.09e-51 | 171 |
| Msa1018140 | MtrunA17_Chr1g0208771 | 35.880 | 301 | 153 | 9 | 26 | 309 | 13 | 290 | 3.80e-50 | 172 |
| Msa1018140 | MtrunA17_Chr8g0390841 | 35.759 | 316 | 164 | 9 | 10 | 309 | 39 | 331 | 1.18e-49 | 172 |
| Msa1018140 | MtrunA17_Chr3g0103181 | 32.013 | 303 | 173 | 11 | 7 | 308 | 9 | 279 | 1.26e-38 | 137 |
| Msa1018140 | MtrunA17_Chr4g0067431 | 30.519 | 308 | 196 | 6 | 9 | 308 | 14 | 311 | 3.06e-32 | 122 |
| Msa1018140 | MtrunA17_Chr3g0103191 | 31.765 | 255 | 146 | 5 | 7 | 250 | 9 | 246 | 2.79e-31 | 117 |
| Msa1018140 | MtrunA17_Chr1g0163261 | 31.596 | 307 | 174 | 10 | 5 | 305 | 4 | 280 | 1.87e-30 | 117 |
| Msa1018140 | MtrunA17_Chr1g0171611 | 30.333 | 300 | 164 | 8 | 7 | 302 | 6 | 264 | 4.67e-29 | 112 |
| Msa1018140 | MtrunA17_Chr1g0163181 | 32.759 | 290 | 159 | 12 | 19 | 295 | 14 | 280 | 6.92e-29 | 115 |
| Msa1018140 | MtrunA17_Chr1g0163231 | 30.195 | 308 | 166 | 11 | 7 | 302 | 6 | 276 | 1.33e-28 | 111 |
| Msa1018140 | MtrunA17_Chr3g0103171 | 28.425 | 292 | 168 | 8 | 26 | 308 | 6 | 265 | 1.76e-28 | 110 |
| Msa1018140 | MtrunA17_Chr1g0163251 | 31.847 | 314 | 168 | 13 | 1 | 305 | 1 | 277 | 9.70e-28 | 111 |
| Msa1018140 | MtrunA17_Chr5g0419201 | 35.196 | 179 | 106 | 3 | 10 | 182 | 16 | 190 | 2.14e-27 | 105 |
| Msa1018140 | MtrunA17_Chr1g0163221 | 30.565 | 301 | 188 | 10 | 9 | 308 | 10 | 290 | 9.34e-27 | 107 |
| Msa1018140 | MtrunA17_Chr3g0103151 | 49.020 | 102 | 50 | 1 | 7 | 108 | 9 | 108 | 1.17e-26 | 102 |
| Msa1018140 | MtrunA17_Chr1g0163201 | 31.507 | 292 | 167 | 10 | 26 | 309 | 19 | 285 | 2.70e-25 | 104 |
| Msa1018140 | MtrunA17_Chr1g0154171 | 24.159 | 327 | 201 | 6 | 21 | 311 | 33 | 348 | 2.46e-23 | 98.6 |
| Msa1018140 | MtrunA17_Chr5g0429931 | 26.846 | 298 | 161 | 10 | 13 | 309 | 1 | 242 | 7.55e-23 | 95.1 |
| Msa1018140 | MtrunA17_Chr1g0154131 | 26.780 | 295 | 192 | 6 | 23 | 310 | 195 | 472 | 1.40e-22 | 97.8 |
| Msa1018140 | MtrunA17_Chr1g0154131 | 41.558 | 77 | 45 | 0 | 23 | 99 | 38 | 114 | 2.62e-11 | 64.3 |
| Msa1018140 | MtrunA17_Chr1g0154111 | 25.680 | 331 | 194 | 8 | 9 | 295 | 25 | 347 | 2.50e-22 | 97.4 |
| Msa1018140 | MtrunA17_Chr1g0154161 | 23.988 | 321 | 175 | 8 | 9 | 304 | 29 | 305 | 2.63e-22 | 95.1 |
| Msa1018140 | MtrunA17_Chr1g0154041 | 26.074 | 349 | 207 | 11 | 9 | 313 | 15 | 356 | 4.08e-22 | 96.7 |
| Msa1018140 | MtrunA17_Chr4g0033961 | 41.818 | 110 | 62 | 1 | 5 | 112 | 1 | 110 | 4.68e-22 | 95.9 |
| Msa1018140 | MtrunA17_Chr4g0033961 | 31.250 | 208 | 115 | 8 | 105 | 309 | 206 | 388 | 7.00e-16 | 77.8 |
| Msa1018140 | MtrunA17_Chr6g0467351 | 39.669 | 121 | 70 | 2 | 9 | 126 | 14 | 134 | 7.64e-22 | 92.0 |
| Msa1018140 | MtrunA17_Chr1g0162441 | 40.000 | 130 | 75 | 2 | 6 | 134 | 3 | 130 | 1.12e-21 | 94.7 |
| Msa1018140 | MtrunA17_Chr1g0162441 | 29.167 | 192 | 107 | 5 | 137 | 309 | 211 | 392 | 7.98e-14 | 71.6 |
| Msa1018140 | MtrunA17_Chr1g0154191 | 24.179 | 335 | 204 | 8 | 3 | 294 | 15 | 342 | 1.64e-21 | 93.6 |
| Msa1018140 | MtrunA17_Chr1g0163131 | 26.688 | 311 | 183 | 11 | 2 | 294 | 10 | 293 | 2.14e-21 | 92.4 |
| Msa1018140 | MtrunA17_Chr3g0077411 | 26.198 | 313 | 170 | 9 | 9 | 310 | 261 | 523 | 1.15e-20 | 92.4 |
| Msa1018140 | MtrunA17_Chr3g0077411 | 24.242 | 297 | 151 | 6 | 9 | 305 | 24 | 246 | 1.23e-18 | 86.3 |
| Msa1018140 | MtrunA17_Chr1g0154071 | 23.548 | 310 | 192 | 6 | 24 | 294 | 169 | 472 | 4.84e-19 | 87.4 |
| Msa1018140 | MtrunA17_Chr1g0154071 | 33.333 | 96 | 63 | 1 | 9 | 104 | 27 | 121 | 7.16e-12 | 65.9 |
| Msa1018140 | MtrunA17_Chr1g0163241 | 35.971 | 139 | 76 | 2 | 26 | 153 | 23 | 159 | 1.41e-18 | 81.6 |
| Msa1018140 | MtrunA17_Chr1g0163191 | 45.556 | 90 | 47 | 1 | 19 | 108 | 14 | 101 | 1.98e-18 | 80.9 |
| Msa1018140 | MtrunA17_Chr3g0077461 | 26.689 | 296 | 140 | 9 | 9 | 299 | 236 | 459 | 3.44e-18 | 84.7 |
| Msa1018140 | MtrunA17_Chr3g0077461 | 38.372 | 86 | 53 | 0 | 26 | 111 | 23 | 108 | 2.03e-16 | 79.3 |
| Msa1018140 | MtrunA17_Chr1g0163101 | 34.507 | 142 | 85 | 3 | 9 | 145 | 16 | 154 | 4.19e-18 | 80.5 |
| Msa1018140 | MtrunA17_Chr3g0077451 | 24.221 | 289 | 152 | 8 | 24 | 309 | 10 | 234 | 1.07e-17 | 80.9 |
| Msa1018140 | MtrunA17_Chr1g0162411 | 41.053 | 95 | 56 | 0 | 10 | 104 | 7 | 101 | 2.67e-16 | 79.0 |
| Msa1018140 | MtrunA17_Chr1g0163121 | 46.067 | 89 | 45 | 2 | 24 | 112 | 9 | 94 | 4.53e-16 | 73.9 |
| Msa1018140 | MtrunA17_Chr4g0009491 | 33.600 | 125 | 83 | 0 | 9 | 133 | 224 | 348 | 9.62e-16 | 77.4 |
| Msa1018140 | MtrunA17_Chr4g0009491 | 32.283 | 127 | 75 | 2 | 24 | 150 | 11 | 126 | 4.00e-15 | 75.5 |
| Msa1018140 | MtrunA17_Chr1g0163061 | 39.423 | 104 | 62 | 1 | 9 | 111 | 14 | 117 | 1.31e-15 | 75.5 |
| Msa1018140 | MtrunA17_Chr3g0077381 | 34.259 | 108 | 68 | 1 | 24 | 131 | 34 | 138 | 1.34e-15 | 77.0 |
| Msa1018140 | MtrunA17_Chr3g0077381 | 32.800 | 125 | 84 | 0 | 9 | 133 | 246 | 370 | 3.50e-14 | 72.8 |
| Msa1018140 | MtrunA17_Chr1g0162161 | 36.449 | 107 | 65 | 2 | 25 | 131 | 3 | 106 | 7.55e-15 | 71.2 |
| Msa1018140 | MtrunA17_Chr3g0103201 | 26.033 | 242 | 153 | 6 | 68 | 308 | 4 | 220 | 1.11e-14 | 72.0 |
| Msa1018140 | MtrunA17_Chr1g0154101 | 29.891 | 184 | 106 | 5 | 9 | 191 | 183 | 344 | 1.45e-14 | 74.3 |
| Msa1018140 | MtrunA17_Chr1g0154101 | 38.462 | 91 | 56 | 0 | 9 | 99 | 24 | 114 | 1.26e-13 | 71.6 |
| Msa1018140 | MtrunA17_Chr1g0154211 | 38.776 | 98 | 59 | 1 | 3 | 100 | 16 | 112 | 3.12e-14 | 72.8 |
| Msa1018140 | MtrunA17_Chr1g0163141 | 43.820 | 89 | 47 | 2 | 24 | 112 | 9 | 94 | 4.21e-14 | 69.7 |
| Msa1018140 | MtrunA17_Chr1g0154251 | 32.184 | 174 | 95 | 5 | 9 | 175 | 26 | 183 | 6.54e-14 | 72.0 |
| Msa1018140 | MtrunA17_Chr3g0077361 | 28.671 | 143 | 90 | 3 | 9 | 150 | 39 | 170 | 6.06e-13 | 69.3 |
| Msa1018140 | MtrunA17_Chr1g0163081 | 39.583 | 96 | 55 | 2 | 25 | 120 | 5 | 97 | 3.08e-12 | 63.5 |
| Msa1018140 | MtrunA17_Chr1g0154241 | 34.375 | 96 | 62 | 1 | 9 | 104 | 21 | 115 | 5.37e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1018140 | AT3G18990.1 | 31.471 | 340 | 169 | 9 | 6 | 297 | 2 | 325 | 9.45e-39 | 140 |
| Msa1018140 | AT3G18990.2 | 31.471 | 340 | 169 | 9 | 6 | 297 | 2 | 325 | 2.46e-38 | 139 |
| Msa1018140 | AT4G33280.1 | 28.302 | 318 | 196 | 10 | 8 | 309 | 18 | 319 | 4.20e-23 | 97.8 |
| Msa1018140 | AT3G18960.2 | 40.909 | 110 | 65 | 0 | 4 | 113 | 24 | 133 | 1.14e-22 | 93.6 |
| Msa1018140 | AT3G18960.1 | 40.909 | 110 | 65 | 0 | 4 | 113 | 24 | 133 | 1.21e-22 | 94.0 |
| Msa1018140 | AT4G01580.1 | 35.172 | 145 | 92 | 1 | 4 | 148 | 24 | 166 | 1.62e-22 | 93.2 |
| Msa1018140 | AT1G49475.1 | 39.815 | 108 | 64 | 1 | 10 | 117 | 34 | 140 | 2.22e-20 | 87.4 |
| Msa1018140 | AT4G33280.3 | 25.469 | 373 | 197 | 11 | 8 | 309 | 18 | 380 | 2.76e-19 | 87.8 |
| Msa1018140 | AT3G18960.3 | 45.455 | 88 | 48 | 0 | 26 | 113 | 9 | 96 | 3.28e-19 | 83.6 |
| Msa1018140 | AT1G49480.3 | 32.061 | 131 | 78 | 4 | 179 | 309 | 102 | 221 | 1.01e-13 | 69.7 |
| Msa1018140 | AT1G49480.1 | 32.061 | 131 | 78 | 4 | 179 | 309 | 102 | 221 | 1.01e-13 | 69.7 |
| Msa1018140 | AT1G49480.2 | 32.061 | 131 | 78 | 4 | 179 | 309 | 102 | 221 | 1.01e-13 | 69.7 |
| Msa1018140 | AT4G33280.2 | 38.614 | 101 | 58 | 2 | 8 | 104 | 18 | 118 | 8.56e-12 | 65.1 |
Find 54 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCATTGTTCACATCTTT+AGG | 0.181697 | 7_1:+38022797 | Msa1018140:CDS |
| TTTAATCAACCTTGTGAAAT+TGG | 0.186306 | 7_1:+38021430 | Msa1018140:CDS |
| CGAAGATGTGCACTTCAAAA+TGG | 0.226194 | 7_1:-38021261 | None:intergenic |
| ATTCATCTTAGGTTATTAAA+TGG | 0.226202 | 7_1:+38022616 | Msa1018140:CDS |
| CTTCATTGTTCACATCTTTA+GGG | 0.247443 | 7_1:+38022798 | Msa1018140:CDS |
| TATTTCTCCACAAACTTTCT+TGG | 0.252264 | 7_1:-38021064 | None:intergenic |
| TTTGGTAAAAGACACTTATT+AGG | 0.278617 | 7_1:+38022571 | Msa1018140:CDS |
| CTGTGTTAAAGTTAGTAAAT+TGG | 0.283431 | 7_1:+38021462 | Msa1018140:CDS |
| AGAAAGTTTGTGGAGAAATA+TGG | 0.293086 | 7_1:+38021067 | Msa1018140:CDS |
| GGTTATTAAATGGGAGAGTT+TGG | 0.317803 | 7_1:+38022626 | Msa1018140:CDS |
| AAGATCGTTGGATACCCTTT+TGG | 0.336100 | 7_1:-38021329 | None:intergenic |
| AAAAGACACTTATTAGGTTT+AGG | 0.347950 | 7_1:+38022577 | Msa1018140:CDS |
| TTCCTAATTAGATACCTTGC+AGG | 0.351726 | 7_1:-38022649 | None:intergenic |
| GGCCTGCAAGGTATCTAATT+AGG | 0.357731 | 7_1:+38022647 | Msa1018140:CDS |
| CAGAACATACCAAGTGAGTT+TGG | 0.360251 | 7_1:+38022553 | Msa1018140:intron |
| ACCTCCGAATGATGAAGATT+TGG | 0.362326 | 7_1:+38021360 | Msa1018140:CDS |
| AGCAAGGAGATATTCATCTT+AGG | 0.368678 | 7_1:+38022605 | Msa1018140:CDS |
| ATTTCTCCACAAACTTTCTT+GGG | 0.389419 | 7_1:-38021063 | None:intergenic |
| TGCAAAGTGGAGATTAGATT+TGG | 0.413094 | 7_1:+38021132 | Msa1018140:CDS |
| CATTGATGCTGCTTGTAATC+TGG | 0.414628 | 7_1:+38021829 | Msa1018140:CDS |
| TGGACGCATGACAGCAATAA+AGG | 0.428279 | 7_1:-38021801 | None:intergenic |
| TCCAAAGAGTTGAAGCCAAA+AGG | 0.428396 | 7_1:+38021314 | Msa1018140:CDS |
| TTCATCTTAGGTTATTAAAT+GGG | 0.428424 | 7_1:+38022617 | Msa1018140:CDS |
| AAATATGGTTTCAAAAGGGT+TGG | 0.440218 | 7_1:+38021170 | Msa1018140:CDS |
| GATGATCCCAAGAAAGTTTG+TGG | 0.440968 | 7_1:+38021057 | Msa1018140:intron |
| TCTTCCAAATCTTCATCATT+CGG | 0.441815 | 7_1:-38021364 | None:intergenic |
| AGATTTGAAATGTACTCAAC+TGG | 0.443004 | 7_1:+38022691 | Msa1018140:CDS |
| AAAAGGGTATCCAACGATCT+TGG | 0.458573 | 7_1:+38021331 | Msa1018140:CDS |
| TTACAAGCTTTCCTTGATGA+AGG | 0.460972 | 7_1:-38020907 | None:intergenic |
| CCAAAGAGTTGAAGCCAAAA+GGG | 0.465061 | 7_1:+38021315 | Msa1018140:CDS |
| TAAAGTTAGTAAATTGGAAA+AGG | 0.465258 | 7_1:+38021468 | Msa1018140:CDS |
| TGGCTTCAACTCTTTGGAAA+GGG | 0.481840 | 7_1:-38021309 | None:intergenic |
| GAAGATGTGCACTTCAAAAT+GGG | 0.484263 | 7_1:-38021260 | None:intergenic |
| ATTAGGAAAGGCAATAGAAA+AGG | 0.485719 | 7_1:+38022664 | Msa1018140:CDS |
| CATATTTGAAAAGCAGAAGA+TGG | 0.487743 | 7_1:-38021228 | None:intergenic |
| AATCTCCACTTTGCACCACT+TGG | 0.487838 | 7_1:-38021124 | None:intergenic |
| AAGGTAAGTATAGTGCTAGT+AGG | 0.504595 | 7_1:-38022778 | None:intergenic |
| CCTAAAGATGTGAACAATGA+AGG | 0.508003 | 7_1:-38022797 | None:intergenic |
| CATAGAGTTTGCTCTGTCAA+AGG | 0.512724 | 7_1:-38021762 | None:intergenic |
| TTGGCTTCAACTCTTTGGAA+AGG | 0.513756 | 7_1:-38021310 | None:intergenic |
| GAAGACAACAACTTGAAAGT+TGG | 0.520581 | 7_1:+38022730 | Msa1018140:CDS |
| CAAGCAGCATCAATGTATGA+TGG | 0.531742 | 7_1:-38021821 | None:intergenic |
| ATGGGAGAGTTTGGCCTGCA+AGG | 0.535413 | 7_1:+38022635 | Msa1018140:CDS |
| AGGTTTGTTGCCAAGATCGT+TGG | 0.538496 | 7_1:-38021341 | None:intergenic |
| AAGTATCATTCTTTATCTCA+AGG | 0.553311 | 7_1:+38021205 | Msa1018140:CDS |
| CGCATGACAGCAATAAAGGA+TGG | 0.564569 | 7_1:-38021797 | None:intergenic |
| TTGAAATGTACTCAACTGGA+TGG | 0.576795 | 7_1:+38022695 | Msa1018140:CDS |
| TTTGTGGAGAAATATGGAGA+AGG | 0.578281 | 7_1:+38021073 | Msa1018140:CDS |
| TCCAAATCTTCATCATTCGG+AGG | 0.588522 | 7_1:-38021361 | None:intergenic |
| CTATTGCTTCCAATTTCACA+AGG | 0.596543 | 7_1:-38021439 | None:intergenic |
| TGTGATCAAAGCCTTCATCA+AGG | 0.598883 | 7_1:+38020896 | Msa1018140:CDS |
| GCAAGGTATCTAATTAGGAA+AGG | 0.604172 | 7_1:+38022652 | Msa1018140:CDS |
| AGACTCCAAGTGGTGCAAAG+TGG | 0.629081 | 7_1:+38021119 | Msa1018140:CDS |
| ATATATCTAAAGACTCCAAG+TGG | 0.664356 | 7_1:+38021109 | Msa1018140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAAATATTTTAATTGTAAA+TGG | - | chr7_1:38021003-38021022 | None:intergenic | 10.0% |
| !! | ATTAAACCATATTAATATAA+CGG | - | chr7_1:38021028-38021047 | None:intergenic | 10.0% |
| !!! | TATTTTTAGTTAAATATGTT+TGG | + | chr7_1:38022107-38022126 | Msa1018140:intron | 10.0% |
| !!! | ATTTTTAATCCTTTATATTT+TGG | + | chr7_1:38022226-38022245 | Msa1018140:intron | 10.0% |
| !!! | TTTTTAATCCTTTATATTTT+GGG | + | chr7_1:38022227-38022246 | Msa1018140:intron | 10.0% |
| !!! | ATTTTTATTTTGAAGAAAAT+TGG | + | chr7_1:38022276-38022295 | Msa1018140:intron | 10.0% |
| !!! | ACAAATATTTTAATTGTAAA+TGG | - | chr7_1:38021003-38021022 | None:intergenic | 10.0% |
| !! | ATTAAACCATATTAATATAA+CGG | - | chr7_1:38021028-38021047 | None:intergenic | 10.0% |
| !!! | TATTTTTAGTTAAATATGTT+TGG | + | chr7_1:38022107-38022126 | Msa1018140:intron | 10.0% |
| !!! | ATTTTTAATCCTTTATATTT+TGG | + | chr7_1:38022226-38022245 | Msa1018140:intron | 10.0% |
| !!! | TTTTTAATCCTTTATATTTT+GGG | + | chr7_1:38022227-38022246 | Msa1018140:intron | 10.0% |
| !!! | ATTTTTATTTTGAAGAAAAT+TGG | + | chr7_1:38022276-38022295 | Msa1018140:intron | 10.0% |
| !!! | AAGGTCATAAATTTTTTTAA+TGG | + | chr7_1:38021878-38021897 | Msa1018140:intron | 15.0% |
| !!! | TAAATTTTTTTAATGGATGA+AGG | + | chr7_1:38021885-38021904 | Msa1018140:intron | 15.0% |
| !!! | GTTAATCTTTATTGATAATT+TGG | + | chr7_1:38022323-38022342 | Msa1018140:intron | 15.0% |
| !!! | AAGGTCATAAATTTTTTTAA+TGG | + | chr7_1:38021878-38021897 | Msa1018140:intron | 15.0% |
| !!! | TAAATTTTTTTAATGGATGA+AGG | + | chr7_1:38021885-38021904 | Msa1018140:intron | 15.0% |
| !!! | GTTAATCTTTATTGATAATT+TGG | + | chr7_1:38022323-38022342 | Msa1018140:intron | 15.0% |
| !! | ACATATGATCTTGAAAAAAT+GGG | - | chr7_1:38020879-38020898 | None:intergenic | 20.0% |
| !! | TTGTTTCCGTTATATTAATA+TGG | + | chr7_1:38021019-38021038 | Msa1018140:intron | 20.0% |
| !!! | TAAAAAGTGATGGAAAAATA+TGG | + | chr7_1:38021155-38021174 | Msa1018140:CDS | 20.0% |
| !! | TAAAGTTAGTAAATTGGAAA+AGG | + | chr7_1:38021468-38021487 | Msa1018140:CDS | 20.0% |
| !!! | AATATTGACAAAAAGTGTAA+AGG | + | chr7_1:38021505-38021524 | Msa1018140:CDS | 20.0% |
| !! | ATTTACTTTCACTTTATGAT+TGG | + | chr7_1:38021608-38021627 | Msa1018140:intron | 20.0% |
| !! | ATTGGTTAAGTTTCATATTA+TGG | + | chr7_1:38021626-38021645 | Msa1018140:intron | 20.0% |
| !! | ATCAATGAAAATTATAGCTT+AGG | + | chr7_1:38021687-38021706 | Msa1018140:intron | 20.0% |
| !! | TCAATGAAAATTATAGCTTA+GGG | + | chr7_1:38021688-38021707 | Msa1018140:intron | 20.0% |
| !!! | AATTTGGTAATTTGTTATAG+TGG | - | chr7_1:38022059-38022078 | None:intergenic | 20.0% |
| !!! | TTAGTCCAAACAATTTTATA+TGG | + | chr7_1:38022156-38022175 | Msa1018140:intron | 20.0% |
| !! | TTTATAGACCCAAAATATAA+AGG | - | chr7_1:38022238-38022257 | None:intergenic | 20.0% |
| !! | GGTCTATAAATAATGAAAAA+TGG | + | chr7_1:38022248-38022267 | Msa1018140:intron | 20.0% |
| !! | ATTCATCTTAGGTTATTAAA+TGG | + | chr7_1:38022616-38022635 | Msa1018140:CDS | 20.0% |
| !! | TTCATCTTAGGTTATTAAAT+GGG | + | chr7_1:38022617-38022636 | Msa1018140:CDS | 20.0% |
| !! | ACATATGATCTTGAAAAAAT+GGG | - | chr7_1:38020879-38020898 | None:intergenic | 20.0% |
| !! | TTGTTTCCGTTATATTAATA+TGG | + | chr7_1:38021019-38021038 | Msa1018140:intron | 20.0% |
| !!! | TAAAAAGTGATGGAAAAATA+TGG | + | chr7_1:38021155-38021174 | Msa1018140:CDS | 20.0% |
| !! | TAAAGTTAGTAAATTGGAAA+AGG | + | chr7_1:38021468-38021487 | Msa1018140:CDS | 20.0% |
| !!! | AATATTGACAAAAAGTGTAA+AGG | + | chr7_1:38021505-38021524 | Msa1018140:CDS | 20.0% |
| !! | ATTTACTTTCACTTTATGAT+TGG | + | chr7_1:38021608-38021627 | Msa1018140:intron | 20.0% |
| !! | ATTGGTTAAGTTTCATATTA+TGG | + | chr7_1:38021626-38021645 | Msa1018140:intron | 20.0% |
| !! | ATCAATGAAAATTATAGCTT+AGG | + | chr7_1:38021687-38021706 | Msa1018140:intron | 20.0% |
| !! | TCAATGAAAATTATAGCTTA+GGG | + | chr7_1:38021688-38021707 | Msa1018140:intron | 20.0% |
| !!! | AATTTGGTAATTTGTTATAG+TGG | - | chr7_1:38022059-38022078 | None:intergenic | 20.0% |
| !!! | TTAGTCCAAACAATTTTATA+TGG | + | chr7_1:38022156-38022175 | Msa1018140:intron | 20.0% |
| !! | TTTATAGACCCAAAATATAA+AGG | - | chr7_1:38022238-38022257 | None:intergenic | 20.0% |
| !! | GGTCTATAAATAATGAAAAA+TGG | + | chr7_1:38022248-38022267 | Msa1018140:intron | 20.0% |
| !! | ATTCATCTTAGGTTATTAAA+TGG | + | chr7_1:38022616-38022635 | Msa1018140:CDS | 20.0% |
| !! | TTCATCTTAGGTTATTAAAT+GGG | + | chr7_1:38022617-38022636 | Msa1018140:CDS | 20.0% |
| ! | CACATATGATCTTGAAAAAA+TGG | - | chr7_1:38020880-38020899 | None:intergenic | 25.0% |
| ! | GAAAAAAAAGGTAAATGAGT+GGG | - | chr7_1:38020937-38020956 | None:intergenic | 25.0% |
| ! | TGAAAAAAAAGGTAAATGAG+TGG | - | chr7_1:38020938-38020957 | None:intergenic | 25.0% |
| ! | CAACAAAAGCTTGAAAAAAA+AGG | - | chr7_1:38020949-38020968 | None:intergenic | 25.0% |
| !! | TTAGATTTGGTAAAAAGTGA+TGG | + | chr7_1:38021145-38021164 | Msa1018140:CDS | 25.0% |
| ! | TGGAAAAATATGGTTTCAAA+AGG | + | chr7_1:38021165-38021184 | Msa1018140:CDS | 25.0% |
| ! | GGAAAAATATGGTTTCAAAA+GGG | + | chr7_1:38021166-38021185 | Msa1018140:CDS | 25.0% |
| ! | AAGTATCATTCTTTATCTCA+AGG | + | chr7_1:38021205-38021224 | Msa1018140:CDS | 25.0% |
| ! | TTTAATCAACCTTGTGAAAT+TGG | + | chr7_1:38021430-38021449 | Msa1018140:CDS | 25.0% |
| ! | CTGTGTTAAAGTTAGTAAAT+TGG | + | chr7_1:38021462-38021481 | Msa1018140:CDS | 25.0% |
| ! | GAATGAAAAGCTAATAACTT+AGG | - | chr7_1:38021585-38021604 | None:intergenic | 25.0% |
| !!! | TTGTTATAGTGGTTTTTCAA+GGG | - | chr7_1:38022048-38022067 | None:intergenic | 25.0% |
| !!! | TTTGTTATAGTGGTTTTTCA+AGG | - | chr7_1:38022049-38022068 | None:intergenic | 25.0% |
| !! | CAAATTTTACCCATTAAGTA+GGG | + | chr7_1:38022073-38022092 | Msa1018140:intron | 25.0% |
| ! | TTTGACCAGAGATATTTATA+GGG | - | chr7_1:38022134-38022153 | None:intergenic | 25.0% |
| !! | TTTTGACCAGAGATATTTAT+AGG | - | chr7_1:38022135-38022154 | None:intergenic | 25.0% |
| ! | CAAGTCCATATAAAATTGTT+TGG | - | chr7_1:38022164-38022183 | None:intergenic | 25.0% |
| ! | AGTATCAGTAAATACATTGT+CGG | - | chr7_1:38022501-38022520 | None:intergenic | 25.0% |
| ! | TTTGGTAAAAGACACTTATT+AGG | + | chr7_1:38022571-38022590 | Msa1018140:CDS | 25.0% |
| ! | AAAAGACACTTATTAGGTTT+AGG | + | chr7_1:38022577-38022596 | Msa1018140:CDS | 25.0% |
| ! | CACATATGATCTTGAAAAAA+TGG | - | chr7_1:38020880-38020899 | None:intergenic | 25.0% |
| ! | GAAAAAAAAGGTAAATGAGT+GGG | - | chr7_1:38020937-38020956 | None:intergenic | 25.0% |
| ! | TGAAAAAAAAGGTAAATGAG+TGG | - | chr7_1:38020938-38020957 | None:intergenic | 25.0% |
| ! | CAACAAAAGCTTGAAAAAAA+AGG | - | chr7_1:38020949-38020968 | None:intergenic | 25.0% |
| !! | TTAGATTTGGTAAAAAGTGA+TGG | + | chr7_1:38021145-38021164 | Msa1018140:CDS | 25.0% |
| ! | TGGAAAAATATGGTTTCAAA+AGG | + | chr7_1:38021165-38021184 | Msa1018140:CDS | 25.0% |
| ! | GGAAAAATATGGTTTCAAAA+GGG | + | chr7_1:38021166-38021185 | Msa1018140:CDS | 25.0% |
| ! | AAGTATCATTCTTTATCTCA+AGG | + | chr7_1:38021205-38021224 | Msa1018140:CDS | 25.0% |
| ! | TTTAATCAACCTTGTGAAAT+TGG | + | chr7_1:38021430-38021449 | Msa1018140:CDS | 25.0% |
| ! | CTGTGTTAAAGTTAGTAAAT+TGG | + | chr7_1:38021462-38021481 | Msa1018140:CDS | 25.0% |
| ! | GAATGAAAAGCTAATAACTT+AGG | - | chr7_1:38021585-38021604 | None:intergenic | 25.0% |
| !!! | TTGTTATAGTGGTTTTTCAA+GGG | - | chr7_1:38022048-38022067 | None:intergenic | 25.0% |
| !!! | TTTGTTATAGTGGTTTTTCA+AGG | - | chr7_1:38022049-38022068 | None:intergenic | 25.0% |
| !! | CAAATTTTACCCATTAAGTA+GGG | + | chr7_1:38022073-38022092 | Msa1018140:intron | 25.0% |
| ! | TTTGACCAGAGATATTTATA+GGG | - | chr7_1:38022134-38022153 | None:intergenic | 25.0% |
| !! | TTTTGACCAGAGATATTTAT+AGG | - | chr7_1:38022135-38022154 | None:intergenic | 25.0% |
| ! | CAAGTCCATATAAAATTGTT+TGG | - | chr7_1:38022164-38022183 | None:intergenic | 25.0% |
| ! | AGTATCAGTAAATACATTGT+CGG | - | chr7_1:38022501-38022520 | None:intergenic | 25.0% |
| ! | TTTGGTAAAAGACACTTATT+AGG | + | chr7_1:38022571-38022590 | Msa1018140:CDS | 25.0% |
| ! | AAAAGACACTTATTAGGTTT+AGG | + | chr7_1:38022577-38022596 | Msa1018140:CDS | 25.0% |
| ATGATCTTGAAAAAATGGGA+TGG | - | chr7_1:38020875-38020894 | None:intergenic | 30.0% | |
| ATTTCTCCACAAACTTTCTT+GGG | - | chr7_1:38021066-38021085 | None:intergenic | 30.0% | |
| TATTTCTCCACAAACTTTCT+TGG | - | chr7_1:38021067-38021086 | None:intergenic | 30.0% | |
| AGAAAGTTTGTGGAGAAATA+TGG | + | chr7_1:38021067-38021086 | Msa1018140:CDS | 30.0% | |
| ATATATCTAAAGACTCCAAG+TGG | + | chr7_1:38021109-38021128 | Msa1018140:CDS | 30.0% | |
| AAATATGGTTTCAAAAGGGT+TGG | + | chr7_1:38021170-38021189 | Msa1018140:CDS | 30.0% | |
| CATATTTGAAAAGCAGAAGA+TGG | - | chr7_1:38021231-38021250 | None:intergenic | 30.0% | |
| !! | CATCTTCTGCTTTTCAAATA+TGG | + | chr7_1:38021229-38021248 | Msa1018140:CDS | 30.0% |
| !!! | GAAAGGGTATTTTATCTCTA+AGG | - | chr7_1:38021296-38021315 | None:intergenic | 30.0% |
| TCTTCCAAATCTTCATCATT+CGG | - | chr7_1:38021367-38021386 | None:intergenic | 30.0% | |
| ! | CAAACAAAGGTTTTGCTTAA+AGG | + | chr7_1:38021859-38021878 | Msa1018140:intron | 30.0% |
| !!! | CTTTTTTTGTGTTAATCCTC+CGG | + | chr7_1:38021913-38021932 | Msa1018140:intron | 30.0% |
| !! | ATTTTGGGTGGAACAATTTT+GGG | - | chr7_1:38021998-38022017 | None:intergenic | 30.0% |
| ! | CCTACTTAATGGGTAAAATT+TGG | - | chr7_1:38022075-38022094 | None:intergenic | 30.0% |
| ! | CCAAATTTTACCCATTAAGT+AGG | + | chr7_1:38022072-38022091 | Msa1018140:intron | 30.0% |
| ! | TACTTTTGACCCTACTTAAT+GGG | - | chr7_1:38022085-38022104 | None:intergenic | 30.0% |
| ! | ATACTTTTGACCCTACTTAA+TGG | - | chr7_1:38022086-38022105 | None:intergenic | 30.0% |
| ! | CAGATTTGTGGTATTTTGTA+AGG | + | chr7_1:38022187-38022206 | Msa1018140:intron | 30.0% |
| ATTAGGAAAGGCAATAGAAA+AGG | + | chr7_1:38022664-38022683 | Msa1018140:CDS | 30.0% | |
| ! | AGATTTGAAATGTACTCAAC+TGG | + | chr7_1:38022691-38022710 | Msa1018140:CDS | 30.0% |
| CTTCATTGTTCACATCTTTA+GGG | + | chr7_1:38022798-38022817 | Msa1018140:CDS | 30.0% | |
| ATGATCTTGAAAAAATGGGA+TGG | - | chr7_1:38020875-38020894 | None:intergenic | 30.0% | |
| ATTTCTCCACAAACTTTCTT+GGG | - | chr7_1:38021066-38021085 | None:intergenic | 30.0% | |
| TATTTCTCCACAAACTTTCT+TGG | - | chr7_1:38021067-38021086 | None:intergenic | 30.0% | |
| AGAAAGTTTGTGGAGAAATA+TGG | + | chr7_1:38021067-38021086 | Msa1018140:CDS | 30.0% | |
| ATATATCTAAAGACTCCAAG+TGG | + | chr7_1:38021109-38021128 | Msa1018140:CDS | 30.0% | |
| AAATATGGTTTCAAAAGGGT+TGG | + | chr7_1:38021170-38021189 | Msa1018140:CDS | 30.0% | |
| CATATTTGAAAAGCAGAAGA+TGG | - | chr7_1:38021231-38021250 | None:intergenic | 30.0% | |
| !! | CATCTTCTGCTTTTCAAATA+TGG | + | chr7_1:38021229-38021248 | Msa1018140:CDS | 30.0% |
| !!! | GAAAGGGTATTTTATCTCTA+AGG | - | chr7_1:38021296-38021315 | None:intergenic | 30.0% |
| TCTTCCAAATCTTCATCATT+CGG | - | chr7_1:38021367-38021386 | None:intergenic | 30.0% | |
| ! | CAAACAAAGGTTTTGCTTAA+AGG | + | chr7_1:38021859-38021878 | Msa1018140:intron | 30.0% |
| !!! | CTTTTTTTGTGTTAATCCTC+CGG | + | chr7_1:38021913-38021932 | Msa1018140:intron | 30.0% |
| !! | ATTTTGGGTGGAACAATTTT+GGG | - | chr7_1:38021998-38022017 | None:intergenic | 30.0% |
| ! | CCTACTTAATGGGTAAAATT+TGG | - | chr7_1:38022075-38022094 | None:intergenic | 30.0% |
| ! | CCAAATTTTACCCATTAAGT+AGG | + | chr7_1:38022072-38022091 | Msa1018140:intron | 30.0% |
| ! | TACTTTTGACCCTACTTAAT+GGG | - | chr7_1:38022085-38022104 | None:intergenic | 30.0% |
| ! | ATACTTTTGACCCTACTTAA+TGG | - | chr7_1:38022086-38022105 | None:intergenic | 30.0% |
| ! | CAGATTTGTGGTATTTTGTA+AGG | + | chr7_1:38022187-38022206 | Msa1018140:intron | 30.0% |
| ATTAGGAAAGGCAATAGAAA+AGG | + | chr7_1:38022664-38022683 | Msa1018140:CDS | 30.0% | |
| ! | AGATTTGAAATGTACTCAAC+TGG | + | chr7_1:38022691-38022710 | Msa1018140:CDS | 30.0% |
| CTTCATTGTTCACATCTTTA+GGG | + | chr7_1:38022798-38022817 | Msa1018140:CDS | 30.0% | |
| ATCTTGAAAAAATGGGATGG+AGG | - | chr7_1:38020872-38020891 | None:intergenic | 35.0% | |
| TTACAAGCTTTCCTTGATGA+AGG | - | chr7_1:38020910-38020929 | None:intergenic | 35.0% | |
| TTTGTGGAGAAATATGGAGA+AGG | + | chr7_1:38021073-38021092 | Msa1018140:CDS | 35.0% | |
| TGCAAAGTGGAGATTAGATT+TGG | + | chr7_1:38021132-38021151 | Msa1018140:CDS | 35.0% | |
| GAAGATGTGCACTTCAAAAT+GGG | - | chr7_1:38021263-38021282 | None:intergenic | 35.0% | |
| CTATTGCTTCCAATTTCACA+AGG | - | chr7_1:38021442-38021461 | None:intergenic | 35.0% | |
| ! | GAATTTTGCAGGAAAGCAAT+TGG | + | chr7_1:38021718-38021737 | Msa1018140:intron | 35.0% |
| !! | GATTTTGGGTGGAACAATTT+TGG | - | chr7_1:38021999-38022018 | None:intergenic | 35.0% |
| !! | TTTTCAAGGGCTAATCATTC+AGG | - | chr7_1:38022035-38022054 | None:intergenic | 35.0% |
| TTGGTCCCTATAAATATCTC+TGG | + | chr7_1:38022126-38022145 | Msa1018140:intron | 35.0% | |
| ! | GTGGTATTTTGTAAGGAGTA+AGG | + | chr7_1:38022194-38022213 | Msa1018140:intron | 35.0% |
| ! | TGTCTTTTACCAAACTCACT+TGG | - | chr7_1:38022565-38022584 | None:intergenic | 35.0% |
| TTAGGTTTAGGCAAAAAGCA+AGG | + | chr7_1:38022589-38022608 | Msa1018140:CDS | 35.0% | |
| AGCAAGGAGATATTCATCTT+AGG | + | chr7_1:38022605-38022624 | Msa1018140:CDS | 35.0% | |
| GGTTATTAAATGGGAGAGTT+TGG | + | chr7_1:38022626-38022645 | Msa1018140:CDS | 35.0% | |
| TTCCTAATTAGATACCTTGC+AGG | - | chr7_1:38022652-38022671 | None:intergenic | 35.0% | |
| ! | GCAAGGTATCTAATTAGGAA+AGG | + | chr7_1:38022652-38022671 | Msa1018140:CDS | 35.0% |
| TTGAAATGTACTCAACTGGA+TGG | + | chr7_1:38022695-38022714 | Msa1018140:CDS | 35.0% | |
| GAAGACAACAACTTGAAAGT+TGG | + | chr7_1:38022730-38022749 | Msa1018140:CDS | 35.0% | |
| AAGGTAAGTATAGTGCTAGT+AGG | - | chr7_1:38022781-38022800 | None:intergenic | 35.0% | |
| CCTAAAGATGTGAACAATGA+AGG | - | chr7_1:38022800-38022819 | None:intergenic | 35.0% | |
| CCTTCATTGTTCACATCTTT+AGG | + | chr7_1:38022797-38022816 | Msa1018140:CDS | 35.0% | |
| ATCTTGAAAAAATGGGATGG+AGG | - | chr7_1:38020872-38020891 | None:intergenic | 35.0% | |
| TTACAAGCTTTCCTTGATGA+AGG | - | chr7_1:38020910-38020929 | None:intergenic | 35.0% | |
| TTTGTGGAGAAATATGGAGA+AGG | + | chr7_1:38021073-38021092 | Msa1018140:CDS | 35.0% | |
| TGCAAAGTGGAGATTAGATT+TGG | + | chr7_1:38021132-38021151 | Msa1018140:CDS | 35.0% | |
| GAAGATGTGCACTTCAAAAT+GGG | - | chr7_1:38021263-38021282 | None:intergenic | 35.0% | |
| CTATTGCTTCCAATTTCACA+AGG | - | chr7_1:38021442-38021461 | None:intergenic | 35.0% | |
| ! | GAATTTTGCAGGAAAGCAAT+TGG | + | chr7_1:38021718-38021737 | Msa1018140:intron | 35.0% |
| !! | GATTTTGGGTGGAACAATTT+TGG | - | chr7_1:38021999-38022018 | None:intergenic | 35.0% |
| !! | TTTTCAAGGGCTAATCATTC+AGG | - | chr7_1:38022035-38022054 | None:intergenic | 35.0% |
| TTGGTCCCTATAAATATCTC+TGG | + | chr7_1:38022126-38022145 | Msa1018140:intron | 35.0% | |
| ! | GTGGTATTTTGTAAGGAGTA+AGG | + | chr7_1:38022194-38022213 | Msa1018140:intron | 35.0% |
| ! | TGTCTTTTACCAAACTCACT+TGG | - | chr7_1:38022565-38022584 | None:intergenic | 35.0% |
| TTAGGTTTAGGCAAAAAGCA+AGG | + | chr7_1:38022589-38022608 | Msa1018140:CDS | 35.0% | |
| AGCAAGGAGATATTCATCTT+AGG | + | chr7_1:38022605-38022624 | Msa1018140:CDS | 35.0% | |
| GGTTATTAAATGGGAGAGTT+TGG | + | chr7_1:38022626-38022645 | Msa1018140:CDS | 35.0% | |
| TTCCTAATTAGATACCTTGC+AGG | - | chr7_1:38022652-38022671 | None:intergenic | 35.0% | |
| ! | GCAAGGTATCTAATTAGGAA+AGG | + | chr7_1:38022652-38022671 | Msa1018140:CDS | 35.0% |
| TTGAAATGTACTCAACTGGA+TGG | + | chr7_1:38022695-38022714 | Msa1018140:CDS | 35.0% | |
| GAAGACAACAACTTGAAAGT+TGG | + | chr7_1:38022730-38022749 | Msa1018140:CDS | 35.0% | |
| AAGGTAAGTATAGTGCTAGT+AGG | - | chr7_1:38022781-38022800 | None:intergenic | 35.0% | |
| CCTAAAGATGTGAACAATGA+AGG | - | chr7_1:38022800-38022819 | None:intergenic | 35.0% | |
| CCTTCATTGTTCACATCTTT+AGG | + | chr7_1:38022797-38022816 | Msa1018140:CDS | 35.0% | |
| TGTGATCAAAGCCTTCATCA+AGG | + | chr7_1:38020896-38020915 | Msa1018140:CDS | 40.0% | |
| GATGATCCCAAGAAAGTTTG+TGG | + | chr7_1:38021057-38021076 | Msa1018140:intron | 40.0% | |
| CGAAGATGTGCACTTCAAAA+TGG | - | chr7_1:38021264-38021283 | None:intergenic | 40.0% | |
| ! | TGGCTTCAACTCTTTGGAAA+GGG | - | chr7_1:38021312-38021331 | None:intergenic | 40.0% |
| ! | TTGGCTTCAACTCTTTGGAA+AGG | - | chr7_1:38021313-38021332 | None:intergenic | 40.0% |
| TCCAAAGAGTTGAAGCCAAA+AGG | + | chr7_1:38021314-38021333 | Msa1018140:CDS | 40.0% | |
| CCAAAGAGTTGAAGCCAAAA+GGG | + | chr7_1:38021315-38021334 | Msa1018140:CDS | 40.0% | |
| ! | AAGATCGTTGGATACCCTTT+TGG | - | chr7_1:38021332-38021351 | None:intergenic | 40.0% |
| !! | AAAAGGGTATCCAACGATCT+TGG | + | chr7_1:38021331-38021350 | Msa1018140:CDS | 40.0% |
| ACCTCCGAATGATGAAGATT+TGG | + | chr7_1:38021360-38021379 | Msa1018140:CDS | 40.0% | |
| TCCAAATCTTCATCATTCGG+AGG | - | chr7_1:38021364-38021383 | None:intergenic | 40.0% | |
| ! | CATAGAGTTTGCTCTGTCAA+AGG | - | chr7_1:38021765-38021784 | None:intergenic | 40.0% |
| CAAGCAGCATCAATGTATGA+TGG | - | chr7_1:38021824-38021843 | None:intergenic | 40.0% | |
| ! | CATTGATGCTGCTTGTAATC+TGG | + | chr7_1:38021829-38021848 | Msa1018140:CDS | 40.0% |
| ATCTGGTAAGCTGCAAACAA+AGG | + | chr7_1:38021846-38021865 | Msa1018140:intron | 40.0% | |
| GGCTGAACTTCAGATTATCA+GGG | - | chr7_1:38021956-38021975 | None:intergenic | 40.0% | |
| GGCTAGGTTATACTTCTTCA+CGG | - | chr7_1:38021977-38021996 | None:intergenic | 40.0% | |
| ATGGACTTGACTCAGATTTG+TGG | + | chr7_1:38022175-38022194 | Msa1018140:intron | 40.0% | |
| CAGAACATACCAAGTGAGTT+TGG | + | chr7_1:38022553-38022572 | Msa1018140:intron | 40.0% | |
| TGTGATCAAAGCCTTCATCA+AGG | + | chr7_1:38020896-38020915 | Msa1018140:CDS | 40.0% | |
| GATGATCCCAAGAAAGTTTG+TGG | + | chr7_1:38021057-38021076 | Msa1018140:intron | 40.0% | |
| CGAAGATGTGCACTTCAAAA+TGG | - | chr7_1:38021264-38021283 | None:intergenic | 40.0% | |
| ! | TGGCTTCAACTCTTTGGAAA+GGG | - | chr7_1:38021312-38021331 | None:intergenic | 40.0% |
| ! | TTGGCTTCAACTCTTTGGAA+AGG | - | chr7_1:38021313-38021332 | None:intergenic | 40.0% |
| TCCAAAGAGTTGAAGCCAAA+AGG | + | chr7_1:38021314-38021333 | Msa1018140:CDS | 40.0% | |
| CCAAAGAGTTGAAGCCAAAA+GGG | + | chr7_1:38021315-38021334 | Msa1018140:CDS | 40.0% | |
| ! | AAGATCGTTGGATACCCTTT+TGG | - | chr7_1:38021332-38021351 | None:intergenic | 40.0% |
| !! | AAAAGGGTATCCAACGATCT+TGG | + | chr7_1:38021331-38021350 | Msa1018140:CDS | 40.0% |
| ACCTCCGAATGATGAAGATT+TGG | + | chr7_1:38021360-38021379 | Msa1018140:CDS | 40.0% | |
| TCCAAATCTTCATCATTCGG+AGG | - | chr7_1:38021364-38021383 | None:intergenic | 40.0% | |
| ! | CATAGAGTTTGCTCTGTCAA+AGG | - | chr7_1:38021765-38021784 | None:intergenic | 40.0% |
| CAAGCAGCATCAATGTATGA+TGG | - | chr7_1:38021824-38021843 | None:intergenic | 40.0% | |
| ! | CATTGATGCTGCTTGTAATC+TGG | + | chr7_1:38021829-38021848 | Msa1018140:CDS | 40.0% |
| ATCTGGTAAGCTGCAAACAA+AGG | + | chr7_1:38021846-38021865 | Msa1018140:intron | 40.0% | |
| GGCTGAACTTCAGATTATCA+GGG | - | chr7_1:38021956-38021975 | None:intergenic | 40.0% | |
| GGCTAGGTTATACTTCTTCA+CGG | - | chr7_1:38021977-38021996 | None:intergenic | 40.0% | |
| ATGGACTTGACTCAGATTTG+TGG | + | chr7_1:38022175-38022194 | Msa1018140:intron | 40.0% | |
| CAGAACATACCAAGTGAGTT+TGG | + | chr7_1:38022553-38022572 | Msa1018140:intron | 40.0% | |
| AATCTCCACTTTGCACCACT+TGG | - | chr7_1:38021127-38021146 | None:intergenic | 45.0% | |
| !!! | CCCTTTTGGCTTCAACTCTT+TGG | - | chr7_1:38021318-38021337 | None:intergenic | 45.0% |
| !! | AGGTTTGTTGCCAAGATCGT+TGG | - | chr7_1:38021344-38021363 | None:intergenic | 45.0% |
| ! | AGGGTGTGCTTGAATTTTGC+AGG | + | chr7_1:38021707-38021726 | Msa1018140:intron | 45.0% |
| CGCATGACAGCAATAAAGGA+TGG | - | chr7_1:38021800-38021819 | None:intergenic | 45.0% | |
| TGGACGCATGACAGCAATAA+AGG | - | chr7_1:38021804-38021823 | None:intergenic | 45.0% | |
| CGGCTGAACTTCAGATTATC+AGG | - | chr7_1:38021957-38021976 | None:intergenic | 45.0% | |
| GTTCCACCCAAAATCGAACT+CGG | + | chr7_1:38022004-38022023 | Msa1018140:intron | 45.0% | |
| TTCCACCCAAAATCGAACTC+GGG | + | chr7_1:38022005-38022024 | Msa1018140:intron | 45.0% | |
| ! | GAGAACCCGAGTTCGATTTT+GGG | - | chr7_1:38022013-38022032 | None:intergenic | 45.0% |
| ! | GGCCTGCAAGGTATCTAATT+AGG | + | chr7_1:38022647-38022666 | Msa1018140:CDS | 45.0% |
| AATCTCCACTTTGCACCACT+TGG | - | chr7_1:38021127-38021146 | None:intergenic | 45.0% | |
| !!! | CCCTTTTGGCTTCAACTCTT+TGG | - | chr7_1:38021318-38021337 | None:intergenic | 45.0% |
| !! | AGGTTTGTTGCCAAGATCGT+TGG | - | chr7_1:38021344-38021363 | None:intergenic | 45.0% |
| ! | AGGGTGTGCTTGAATTTTGC+AGG | + | chr7_1:38021707-38021726 | Msa1018140:intron | 45.0% |
| CGCATGACAGCAATAAAGGA+TGG | - | chr7_1:38021800-38021819 | None:intergenic | 45.0% | |
| TGGACGCATGACAGCAATAA+AGG | - | chr7_1:38021804-38021823 | None:intergenic | 45.0% | |
| CGGCTGAACTTCAGATTATC+AGG | - | chr7_1:38021957-38021976 | None:intergenic | 45.0% | |
| GTTCCACCCAAAATCGAACT+CGG | + | chr7_1:38022004-38022023 | Msa1018140:intron | 45.0% | |
| TTCCACCCAAAATCGAACTC+GGG | + | chr7_1:38022005-38022024 | Msa1018140:intron | 45.0% | |
| ! | GAGAACCCGAGTTCGATTTT+GGG | - | chr7_1:38022013-38022032 | None:intergenic | 45.0% |
| ! | GGCCTGCAAGGTATCTAATT+AGG | + | chr7_1:38022647-38022666 | Msa1018140:CDS | 45.0% |
| AGACTCCAAGTGGTGCAAAG+TGG | + | chr7_1:38021119-38021138 | Msa1018140:CDS | 50.0% | |
| TGTGTTAATCCTCCGGTTCC+TGG | + | chr7_1:38021920-38021939 | Msa1018140:intron | 50.0% | |
| GTGTTAATCCTCCGGTTCCT+GGG | + | chr7_1:38021921-38021940 | Msa1018140:intron | 50.0% | |
| ! | GGGTGGAACAATTTTGGGCT+AGG | - | chr7_1:38021993-38022012 | None:intergenic | 50.0% |
| ! | AACCCGAGTTCGATTTTGGG+TGG | - | chr7_1:38022010-38022029 | None:intergenic | 50.0% |
| ! | GGAGAACCCGAGTTCGATTT+TGG | - | chr7_1:38022014-38022033 | None:intergenic | 50.0% |
| AGACTCCAAGTGGTGCAAAG+TGG | + | chr7_1:38021119-38021138 | Msa1018140:CDS | 50.0% | |
| TGTGTTAATCCTCCGGTTCC+TGG | + | chr7_1:38021920-38021939 | Msa1018140:intron | 50.0% | |
| GTGTTAATCCTCCGGTTCCT+GGG | + | chr7_1:38021921-38021940 | Msa1018140:intron | 50.0% | |
| ! | GGGTGGAACAATTTTGGGCT+AGG | - | chr7_1:38021993-38022012 | None:intergenic | 50.0% |
| ! | AACCCGAGTTCGATTTTGGG+TGG | - | chr7_1:38022010-38022029 | None:intergenic | 50.0% |
| ! | GGAGAACCCGAGTTCGATTT+TGG | - | chr7_1:38022014-38022033 | None:intergenic | 50.0% |
| ATGGGAGAGTTTGGCCTGCA+AGG | + | chr7_1:38022635-38022654 | Msa1018140:CDS | 55.0% | |
| ATGGGAGAGTTTGGCCTGCA+AGG | + | chr7_1:38022635-38022654 | Msa1018140:CDS | 55.0% | |
| ATCCTCCGGTTCCTGGGAGA+AGG | + | chr7_1:38021927-38021946 | Msa1018140:intron | 60.0% | |
| TCCTCCGGTTCCTGGGAGAA+GGG | + | chr7_1:38021928-38021947 | Msa1018140:intron | 60.0% | |
| ATCCTCCGGTTCCTGGGAGA+AGG | + | chr7_1:38021927-38021946 | Msa1018140:intron | 60.0% | |
| TCCTCCGGTTCCTGGGAGAA+GGG | + | chr7_1:38021928-38021947 | Msa1018140:intron | 60.0% | |
| CCTCCGGTTCCTGGGAGAAG+GGG | + | chr7_1:38021929-38021948 | Msa1018140:intron | 65.0% | |
| CTCCGGTTCCTGGGAGAAGG+GGG | + | chr7_1:38021930-38021949 | Msa1018140:intron | 65.0% | |
| TATCAGGGCCCCCTTCTCCC+AGG | - | chr7_1:38021941-38021960 | None:intergenic | 65.0% | |
| CCTCCGGTTCCTGGGAGAAG+GGG | + | chr7_1:38021929-38021948 | Msa1018140:intron | 65.0% | |
| CTCCGGTTCCTGGGAGAAGG+GGG | + | chr7_1:38021930-38021949 | Msa1018140:intron | 65.0% | |
| TATCAGGGCCCCCTTCTCCC+AGG | - | chr7_1:38021941-38021960 | None:intergenic | 65.0% | |
| CCCCTTCTCCCAGGAACCGG+AGG | - | chr7_1:38021932-38021951 | None:intergenic | 70.0% | |
| GGCCCCCTTCTCCCAGGAAC+CGG | - | chr7_1:38021935-38021954 | None:intergenic | 70.0% | |
| CCCCTTCTCCCAGGAACCGG+AGG | - | chr7_1:38021932-38021951 | None:intergenic | 70.0% | |
| GGCCCCCTTCTCCCAGGAAC+CGG | - | chr7_1:38021935-38021954 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 38020854 | 38022837 | 38020854 | ID=Msa1018140;Name=Msa1018140 |
| chr7_1 | mRNA | 38020854 | 38022837 | 38020854 | ID=Msa1018140-mRNA-1;Parent=Msa1018140;Name=Msa1018140-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|1|4|0|314 |
| chr7_1 | exon | 38020854 | 38020925 | 38020854 | ID=Msa1018140-mRNA-1:exon:7327;Parent=Msa1018140-mRNA-1 |
| chr7_1 | exon | 38021058 | 38021526 | 38021058 | ID=Msa1018140-mRNA-1:exon:7328;Parent=Msa1018140-mRNA-1 |
| chr7_1 | exon | 38021729 | 38021850 | 38021729 | ID=Msa1018140-mRNA-1:exon:7329;Parent=Msa1018140-mRNA-1 |
| chr7_1 | exon | 38022556 | 38022837 | 38022556 | ID=Msa1018140-mRNA-1:exon:7330;Parent=Msa1018140-mRNA-1 |
| chr7_1 | CDS | 38020854 | 38020925 | 38020854 | ID=Msa1018140-mRNA-1:cds;Parent=Msa1018140-mRNA-1 |
| chr7_1 | CDS | 38021058 | 38021526 | 38021058 | ID=Msa1018140-mRNA-1:cds;Parent=Msa1018140-mRNA-1 |
| chr7_1 | CDS | 38021729 | 38021850 | 38021729 | ID=Msa1018140-mRNA-1:cds;Parent=Msa1018140-mRNA-1 |
| chr7_1 | CDS | 38022556 | 38022837 | 38022556 | ID=Msa1018140-mRNA-1:cds;Parent=Msa1018140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
