AlfalfaGEDB | Msa1018140

M. sativa cultivar zhongmu-4 / Msa1018140

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241
PFAM: PF02362.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018140	AES78894.2	90.596	319	24	1	1	313	1	319	0.0	599

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018140	sp\|Q8L3W1\|VRN1_ARATH	31.471	340	169	9	6	297	2	325	9.29e-38	140

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018140	G7KVW7	90.596	319	24	1	1	313	1	319	0.0	599

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1018140	TF	B3

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018140	MtrunA17_Chr7g0233571	91.855	221	18	0	1	221	1	221	5.17e-152	425
Msa1018140	MtrunA17_Chr7g0233541	63.668	289	96	6	25	311	1	282	9.90e-127	363
Msa1018140	MtrunA17_Chr3g0131891	62.540	315	98	10	1	311	7	305	2.26e-124	359
Msa1018140	MtrunA17_Chr7g0233561	59.355	310	117	7	4	311	12	314	6.14e-123	355
Msa1018140	MtrunA17_Chr7g0233521	60.279	287	92	6	25	311	1	265	2.86e-116	337
Msa1018140	MtrunA17_Chr7g0233531	56.098	287	104	8	25	311	1	265	6.64e-101	297
Msa1018140	MtrunA17_Chr1g0163071	37.086	302	158	7	25	309	1	287	6.09e-51	171
Msa1018140	MtrunA17_Chr1g0208771	35.880	301	153	9	26	309	13	290	3.80e-50	172
Msa1018140	MtrunA17_Chr8g0390841	35.759	316	164	9	10	309	39	331	1.18e-49	172
Msa1018140	MtrunA17_Chr3g0103181	32.013	303	173	11	7	308	9	279	1.26e-38	137

Showing 1 to 10 of 63 entries

Previous1 2 3 4 5 6 7Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018140	AT3G18990.1	31.471	340	169	9	6	297	2	325	9.45e-39	140
Msa1018140	AT3G18990.2	31.471	340	169	9	6	297	2	325	2.46e-38	139
Msa1018140	AT4G33280.1	28.302	318	196	10	8	309	18	319	4.20e-23	97.8
Msa1018140	AT3G18960.2	40.909	110	65	0	4	113	24	133	1.14e-22	93.6
Msa1018140	AT3G18960.1	40.909	110	65	0	4	113	24	133	1.21e-22	94.0
Msa1018140	AT4G01580.1	35.172	145	92	1	4	148	24	166	1.62e-22	93.2
Msa1018140	AT1G49475.1	39.815	108	64	1	10	117	34	140	2.22e-20	87.4
Msa1018140	AT4G33280.3	25.469	373	197	11	8	309	18	380	2.76e-19	87.8
Msa1018140	AT3G18960.3	45.455	88	48	0	26	113	9	96	3.28e-19	83.6
Msa1018140	AT1G49480.3	32.061	131	78	4	179	309	102	221	1.01e-13	69.7

Showing 1 to 10 of 13 entries

Previous1 2Next

Find 54 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACACTTATTAGGTTT+AGG	0.347950	7_1:+38022577	Msa1018140:CDS
AAAAGGGTATCCAACGATCT+TGG	0.458573	7_1:+38021331	Msa1018140:CDS
AAATATGGTTTCAAAAGGGT+TGG	0.440218	7_1:+38021170	Msa1018140:CDS
AAGATCGTTGGATACCCTTT+TGG	0.336100	7_1:-38021329	None:intergenic
AAGGTAAGTATAGTGCTAGT+AGG	0.504595	7_1:-38022778	None:intergenic
AAGTATCATTCTTTATCTCA+AGG	0.553311	7_1:+38021205	Msa1018140:CDS
AATCTCCACTTTGCACCACT+TGG	0.487838	7_1:-38021124	None:intergenic
ACCTCCGAATGATGAAGATT+TGG	0.362326	7_1:+38021360	Msa1018140:CDS
AGAAAGTTTGTGGAGAAATA+TGG	0.293086	7_1:+38021067	Msa1018140:CDS
AGACTCCAAGTGGTGCAAAG+TGG	0.629081	7_1:+38021119	Msa1018140:CDS

Showing 1 to 10 of 54 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATGATCTTGAAAAAATGGGA+TGG	-	chr7_1:38020875-38020894	None:intergenic	30.0%
ATTTCTCCACAAACTTTCTT+GGG	-	chr7_1:38021066-38021085	None:intergenic	30.0%
TATTTCTCCACAAACTTTCT+TGG	-	chr7_1:38021067-38021086	None:intergenic	30.0%
AGAAAGTTTGTGGAGAAATA+TGG	+	chr7_1:38021067-38021086	Msa1018140:CDS	30.0%
ATATATCTAAAGACTCCAAG+TGG	+	chr7_1:38021109-38021128	Msa1018140:CDS	30.0%
AAATATGGTTTCAAAAGGGT+TGG	+	chr7_1:38021170-38021189	Msa1018140:CDS	30.0%
CATATTTGAAAAGCAGAAGA+TGG	-	chr7_1:38021231-38021250	None:intergenic	30.0%
TCTTCCAAATCTTCATCATT+CGG	-	chr7_1:38021367-38021386	None:intergenic	30.0%
ATTAGGAAAGGCAATAGAAA+AGG	+	chr7_1:38022664-38022683	Msa1018140:CDS	30.0%
CTTCATTGTTCACATCTTTA+GGG	+	chr7_1:38022798-38022817	Msa1018140:CDS	30.0%

Showing 1 to 10 of 262 entries

Previous1 2 3 4 5…27Next

Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	38020854	38022837	38020854	ID=Msa1018140;Name=Msa1018140
chr7_1	mRNA	38020854	38022837	38020854	ID=Msa1018140-mRNA-1;Parent=Msa1018140;Name=Msa1018140-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|0\|0\|1\|1\|1\|4\|0\|314
chr7_1	exon	38020854	38020925	38020854	ID=Msa1018140-mRNA-1:exon:7327;Parent=Msa1018140-mRNA-1
chr7_1	exon	38021058	38021526	38021058	ID=Msa1018140-mRNA-1:exon:7328;Parent=Msa1018140-mRNA-1
chr7_1	exon	38021729	38021850	38021729	ID=Msa1018140-mRNA-1:exon:7329;Parent=Msa1018140-mRNA-1
chr7_1	exon	38022556	38022837	38022556	ID=Msa1018140-mRNA-1:exon:7330;Parent=Msa1018140-mRNA-1
chr7_1	CDS	38020854	38020925	38020854	ID=Msa1018140-mRNA-1:cds;Parent=Msa1018140-mRNA-1
chr7_1	CDS	38021058	38021526	38021058	ID=Msa1018140-mRNA-1:cds;Parent=Msa1018140-mRNA-1
chr7_1	CDS	38021729	38021850	38021729	ID=Msa1018140-mRNA-1:cds;Parent=Msa1018140-mRNA-1
chr7_1	CDS	38022556	38022837	38022556	ID=Msa1018140-mRNA-1:cds;Parent=Msa1018140-mRNA-1

Gene Sequence

>Msa1018140

ATGGCTAATGAATTTCCTCCATCCCATTTTTTCAAGATCATATGTGATCAAAGCCTTCATCAAGGAAAGCTTATGATCCCAAGAAAGTTTGTGGAGAAATATGGAGAAGGTTTATCAAATGCTATATATCTAAAGACTCCAAGTGGTGCAAAGTGGAGATTAGATTTGGTAAAAAGTGATGGAAAAATATGGTTTCAAAAGGGTTGGAAAGAATTTGTGAAGTATCATTCTTTATCTCAAGGCCATCTTCTGCTTTTCAAATATGGAAGAACTTCCCATTTTGAAGTGCACATCTTCGATAAGAGTGCCTTAGAGATAAAATACCCTTTCCAAAGAGTTGAAGCCAAAAGGGTATCCAACGATCTTGGCAACAAACCTCCGAATGATGAAGATTTGGAAGATTATATAGCAAGTAAAAAGAGAAAAACTAACTTGTCATTAGAATTTAATCAACCTTGTGAAATTGGAAGCAATAGCTGTGTTAAAGTTAGTAAATTGGAAAAGGTAGCAGAGTTGAATAATATTGACAAAAAGTGTAAAGGAAAGCAATTGGCTGTTGCTAAGAAAGTTACAACCTTTGACAGAGCAAACTCTATGCGAACTTGTAATCCATCCTTTATTGCTGTCATGCGTCCATCATACATTGATGCTGCTTGTAATCTGAACATACCAAGTGAGTTTGGTAAAAGACACTTATTAGGTTTAGGCAAAAAGCAAGGAGATATTCATCTTAGGTTATTAAATGGGAGAGTTTGGCCTGCAAGGTATCTAATTAGGAAAGGCAATAGAAAAGGAGAAAGATTTGAAATGTACTCAACTGGATGGAAGACATTTGCAGAAGACAACAACTTGAAAGTTGGTGATGTTTGCACTTTTGAGCTCTTTCCTACTAGCACTATACTTACCTTCATTGTTCACATCTTTAGGGATTCTTTTGAGACATAG

Protein sequence

>Msa1018140

MANEFPPSHFFKIICDQSLHQGKLMIPRKFVEKYGEGLSNAIYLKTPSGAKWRLDLVKSDGKIWFQKGWKEFVKYHSLSQGHLLLFKYGRTSHFEVHIFDKSALEIKYPFQRVEAKRVSNDLGNKPPNDEDLEDYIASKKRKTNLSLEFNQPCEIGSNSCVKVSKLEKVAELNNIDKKCKGKQLAVAKKVTTFDRANSMRTCNPSFIAVMRPSYIDAACNLNIPSEFGKRHLLGLGKKQGDIHLRLLNGRVWPARYLIRKGNRKGERFEMYSTGWKTFAEDNNLKVGDVCTFELFPTSTILTFIVHIFRDSFET*