AlfalfaGEDB | Msa1018190

M. sativa cultivar zhongmu-4 / Msa1018190

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018190	AES78893.2	56.897	290	60	4	45	270	29	317	3.29e-101	308

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018190	sp\|Q8L3W1\|VRN1_ARATH	27.619	315	129	8	45	260	22	336	8.96e-23	99.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018190	G7KVW6	56.897	290	60	4	45	270	29	317	1.57e-101	308

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TFs/TRs:

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Gene ID	Type	Classification
Msa1018190	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018190	MtrunA17_Chr7g0233561	56.897	290	60	4	45	270	34	322	3.49e-105	308
Msa1018190	MtrunA17_Chr3g0131891	57.143	287	56	5	44	270	34	313	4.58e-98	291
Msa1018190	MtrunA17_Chr7g0233531	56.584	281	60	5	44	270	1	273	2.15e-93	277
Msa1018190	MtrunA17_Chr7g0233541	51.689	296	74	8	44	273	1	293	7.66e-86	258
Msa1018190	MtrunA17_Chr7g0233521	50.173	289	66	5	44	270	1	273	6.98e-83	250
Msa1018190	MtrunA17_Chr7g0233571	58.511	188	52	4	44	207	25	210	8.87e-64	199
Msa1018190	MtrunA17_Chr1g0208771	34.843	287	107	7	45	260	13	290	3.30e-39	142
Msa1018190	MtrunA17_Chr8g0390841	34.035	285	111	7	45	260	55	331	1.72e-37	138
Msa1018190	MtrunA17_Chr1g0163071	29.617	287	132	7	44	260	1	287	5.02e-34	125
Msa1018190	MtrunA17_Chr5g0419201	40.310	129	73	2	44	168	31	159	8.45e-25	98.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018190	AT3G18990.1	27.619	315	129	8	45	260	22	336	9.11e-24	99.0
Msa1018190	AT3G18990.2	27.673	318	131	8	45	263	22	339	1.42e-23	99.0
Msa1018190	AT1G49475.1	44.565	92	50	1	45	136	50	140	1.23e-20	87.4
Msa1018190	AT4G01580.1	42.045	88	51	0	45	132	46	133	5.94e-19	82.8
Msa1018190	AT3G18960.2	40.909	88	52	0	45	132	46	133	5.45e-18	80.5
Msa1018190	AT3G18960.1	40.909	88	52	0	45	132	46	133	8.31e-18	80.1
Msa1018190	AT3G18960.3	40.909	88	52	0	45	132	9	96	1.08e-17	79.0
Msa1018190	AT4G33280.2	38.272	81	49	1	44	123	38	118	9.43e-12	64.3
Msa1018190	AT4G33280.3	38.272	81	49	1	44	123	38	118	1.48e-11	64.7
Msa1018190	AT4G33280.1	38.272	81	49	1	44	123	38	118	1.66e-11	64.3

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Find 61 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTATGAGCAGGCTGAGC+TGG	0.438696	7_1:-38113542	Msa1018190:CDS
AAATATGGTTTGAGAAGGGT+TGG	0.476973	7_1:-38113299	Msa1018190:CDS
AACATTAAAGGATGGATTGC+AGG	0.351206	7_1:+38112635	None:intergenic
AATCTTTGATAAGAGTGCCT+TGG	0.513830	7_1:-38113193	Msa1018190:CDS
AATTCCCAATTCCCACCATT+TGG	0.370461	7_1:+38113345	None:intergenic
AATTGTTCAAATCTCAAAGT+AGG	0.516135	7_1:-38111971	Msa1018190:CDS
ACAAATTCCTAGTACTATTA+TGG	0.254717	7_1:-38112038	Msa1018190:CDS
ACATGATTGAGGAAATTTAG+AGG	0.410033	7_1:+38113053	None:intergenic
AGAAAGTTTGTGGAGAAATA+TGG	0.293086	7_1:-38113402	Msa1018190:CDS
AGACTCCAAATGGTGGGAAT+TGG	0.331245	7_1:-38113350	Msa1018190:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACCTGTCAATTAATTCAAC+CGG	+	chr7_1:38112172-38112191	None:intergenic	30.0%
ATTTCTCCACAAACTTTCTT+GGG	+	chr7_1:38112197-38112216	None:intergenic	30.0%
TATTTCTCCACAAACTTTCT+TGG	+	chr7_1:38112198-38112217	None:intergenic	30.0%
AGAAAGTTTGTGGAGAAATA+TGG	-	chr7_1:38112198-38112217	Msa1018190:intron	30.0%
TTTGTGGAGAAATATGGAAA+AGG	-	chr7_1:38112204-38112223	Msa1018190:intron	30.0%
ATATGTTTGAAGACTCCAAA+TGG	-	chr7_1:38112240-38112259	Msa1018190:intron	30.0%
GATTTGTACCTTAAAATGAG+AGG	+	chr7_1:38112391-38112410	None:intergenic	30.0%
AGATTTATTTCCTTGACCAT+TGG	+	chr7_1:38112478-38112497	None:intergenic	30.0%
ACATGATTGAGGAAATTTAG+AGG	+	chr7_1:38112550-38112569	None:intergenic	30.0%
TTTCCTCAATCATGTGAATT+TGG	-	chr7_1:38112555-38112574	Msa1018190:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	38111955	38113667	38111955	ID=Msa1018190;Name=Msa1018190
chr7_1	mRNA	38111955	38113667	38111955	ID=Msa1018190-mRNA-1;Parent=Msa1018190;Name=Msa1018190-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0\|0\|0\|0.75\|1\|1\|4\|0\|279
chr7_1	exon	38113539	38113667	38113539	ID=Msa1018190-mRNA-1:exon:7367;Parent=Msa1018190-mRNA-1
chr7_1	exon	38113034	38113433	38113034	ID=Msa1018190-mRNA-1:exon:7366;Parent=Msa1018190-mRNA-1
chr7_1	exon	38112612	38112720	38112612	ID=Msa1018190-mRNA-1:exon:7365;Parent=Msa1018190-mRNA-1
chr7_1	exon	38111955	38112156	38111955	ID=Msa1018190-mRNA-1:exon:7364;Parent=Msa1018190-mRNA-1
chr7_1	CDS	38113539	38113667	38113539	ID=Msa1018190-mRNA-1:cds;Parent=Msa1018190-mRNA-1
chr7_1	CDS	38113034	38113433	38113034	ID=Msa1018190-mRNA-1:cds;Parent=Msa1018190-mRNA-1
chr7_1	CDS	38112612	38112720	38112612	ID=Msa1018190-mRNA-1:cds;Parent=Msa1018190-mRNA-1
chr7_1	CDS	38111955	38112156	38111955	ID=Msa1018190-mRNA-1:cds;Parent=Msa1018190-mRNA-1

Gene Sequence

>Msa1018190

TTGAGTGTAAGCATCAAGCTTGCACTAATAAAAAAAGTCGAGCTTGTCCCAGCCCAAACTGATGTGTTTAGGCTGGGCTGGACAACAAAGTTGTGGCCTAATGAAACTATGAGCAGGCTGAGCTGGACGGTAATCCCAAGAAAGTTTGTGGAGAAATATGGAAAAGGCTTACCAAAAGCTATATGTTTGAAGACTCCAAATGGTGGGAATTGGGAATTAAATTTGCAAAAAAATGATGGCAAAATATGGTTTGAGAAGGGTTGGAAACAATTTGCAGATTTTCATTCTCTATCTGATGGCCATCTTCTAGTGTTCAGATATGAAAGAACCTCTCATTTTAAGGTACAAATCTTTGATAAGAGTGCCTTGGAGATAAACTACCCTTTCAAAAGAGTCGAAGCTAAGAGGGTCTCCTCCAATGGTCAAGGAAATAAATCTCCAAATTGTGAAAATTGTATATCATCTCAAAAGAGAAAAGCTAATTCATCCTCTAAATTTCCTCAATCATGTGAATTTGGAAGCAGCAGCGGGAAACAAGTGATTACTACTGCCAAGAAAGTTACAACTCTTGAAAGAGCAAAATCTTTCAAAACCTGCAATCCATCCTTTAATGTTGTCATGGGTGCTATTTTGCTCTGGATGACCCCTACAGGACTAAGATTGGAACTCTCAAGTGGATGGAGAACATTTGCAATTGACAACAACTTGAAAGTTGGTGATGTTTGCAACTTTGAACAAATTCCTAGTACTATTATGGCCTTCCACGTTCACATCTTTAGAGACACAGACAAAGACAACACAAATTGTTCAAATCTCAAAGTAGGATCACTTGATGTTTAA

Protein sequence

>Msa1018190

LSVSIKLALIKKVELVPAQTDVFRLGWTTKLWPNETMSRLSWTVIPRKFVEKYGKGLPKAICLKTPNGGNWELNLQKNDGKIWFEKGWKQFADFHSLSDGHLLVFRYERTSHFKVQIFDKSALEINYPFKRVEAKRVSSNGQGNKSPNCENCISSQKRKANSSSKFPQSCEFGSSSGKQVITTAKKVTTLERAKSFKTCNPSFNVVMGAILLWMTPTGLRLELSSGWRTFAIDNNLKVGDVCNFEQIPSTIMAFHVHIFRDTDKDNTNCSNLKVGSLDV*