Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1018360 | PNX97738.1 | 50.196 | 255 | 49 | 5 | 1 | 180 | 39 | 290 | 3.28e-70 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1018360 | sp|Q9ZVC9|FRS3_ARATH | 51.471 | 68 | 33 | 0 | 113 | 180 | 229 | 296 | 9.21e-19 | 86.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1018360 | A0A2K3N3X7 | 50.196 | 255 | 49 | 5 | 1 | 180 | 39 | 290 | 1.57e-70 | 233 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1018360 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1018360 | MtrunA17_Chr2g0296781 | 54.286 | 140 | 41 | 3 | 1 | 118 | 1 | 139 | 1.06e-39 | 142 |
| Msa1018360 | MtrunA17_Chr2g0296781 | 85.294 | 68 | 10 | 0 | 113 | 180 | 199 | 266 | 8.49e-36 | 131 |
| Msa1018360 | MtrunA17_Chr6g0477261 | 83.824 | 68 | 11 | 0 | 113 | 180 | 88 | 155 | 3.58e-35 | 129 |
| Msa1018360 | MtrunA17_Chr1g0196541 | 76.562 | 64 | 15 | 0 | 116 | 179 | 202 | 265 | 4.57e-31 | 118 |
| Msa1018360 | MtrunA17_Chr1g0196541 | 45.000 | 140 | 54 | 3 | 1 | 118 | 1 | 139 | 9.16e-28 | 108 |
| Msa1018360 | MtrunA17_Chr5g0441581 | 75.758 | 66 | 16 | 0 | 113 | 178 | 227 | 292 | 1.17e-29 | 114 |
| Msa1018360 | MtrunA17_Chr6g0476431 | 52.222 | 90 | 41 | 1 | 1 | 90 | 1 | 88 | 1.84e-27 | 99.0 |
| Msa1018360 | MtrunA17_Chr2g0291591 | 59.677 | 62 | 25 | 0 | 117 | 178 | 270 | 331 | 2.35e-22 | 93.2 |
| Msa1018360 | MtrunA17_Chr1g0202341 | 56.923 | 65 | 28 | 0 | 116 | 180 | 260 | 324 | 8.17e-22 | 91.7 |
| Msa1018360 | MtrunA17_Chr5g0448761 | 54.412 | 68 | 31 | 0 | 113 | 180 | 273 | 340 | 1.27e-20 | 88.2 |
| Msa1018360 | MtrunA17_Chr5g0440451 | 50.000 | 68 | 34 | 0 | 113 | 180 | 254 | 321 | 2.48e-20 | 87.4 |
| Msa1018360 | MtrunA17_Chr2g0291581 | 55.385 | 65 | 29 | 0 | 116 | 180 | 266 | 330 | 7.84e-20 | 85.9 |
| Msa1018360 | MtrunA17_Chr3g0080351 | 28.736 | 261 | 104 | 8 | 1 | 180 | 80 | 339 | 8.29e-20 | 85.9 |
| Msa1018360 | MtrunA17_Chr5g0448511 | 53.846 | 65 | 30 | 0 | 116 | 180 | 48 | 112 | 2.16e-19 | 84.7 |
| Msa1018360 | MtrunA17_Chr3g0118611 | 51.471 | 68 | 33 | 0 | 113 | 180 | 151 | 218 | 4.59e-18 | 80.9 |
| Msa1018360 | MtrunA17_Chr2g0287061 | 50.769 | 65 | 32 | 0 | 116 | 180 | 357 | 421 | 1.23e-16 | 76.6 |
| Msa1018360 | MtrunA17_Chr8g0363841 | 56.364 | 55 | 24 | 0 | 124 | 178 | 235 | 289 | 6.28e-16 | 74.7 |
| Msa1018360 | MtrunA17_Chr2g0329031 | 52.632 | 57 | 27 | 0 | 124 | 180 | 222 | 278 | 1.22e-15 | 73.9 |
| Msa1018360 | MtrunA17_Chr1g0198761 | 51.724 | 58 | 28 | 0 | 123 | 180 | 274 | 331 | 1.90e-15 | 73.6 |
| Msa1018360 | MtrunA17_Chr1g0207551 | 50.877 | 57 | 28 | 0 | 124 | 180 | 249 | 305 | 4.02e-15 | 72.4 |
| Msa1018360 | MtrunA17_Chr5g0431001 | 46.875 | 64 | 34 | 0 | 113 | 176 | 278 | 341 | 1.72e-14 | 70.5 |
| Msa1018360 | MtrunA17_Chr6g0458391 | 36.957 | 92 | 56 | 1 | 89 | 178 | 388 | 479 | 4.25e-13 | 66.6 |
| Msa1018360 | MtrunA17_Chr2g0287651 | 42.857 | 63 | 36 | 0 | 116 | 178 | 287 | 349 | 1.24e-12 | 65.1 |
| Msa1018360 | MtrunA17_Chr1g0164591 | 45.588 | 68 | 37 | 0 | 113 | 180 | 122 | 189 | 1.49e-12 | 64.7 |
| Msa1018360 | MtrunA17_Chr3g0082121 | 47.059 | 68 | 36 | 0 | 113 | 180 | 242 | 309 | 2.52e-12 | 64.3 |
| Msa1018360 | MtrunA17_Chr2g0324011 | 42.647 | 68 | 39 | 0 | 113 | 180 | 216 | 283 | 1.66e-11 | 62.0 |
| Msa1018360 | MtrunA17_Chr1g0203721 | 45.614 | 57 | 31 | 0 | 124 | 180 | 283 | 339 | 2.44e-11 | 61.6 |
| Msa1018360 | MtrunA17_Chr1g0203051 | 26.316 | 171 | 108 | 5 | 8 | 178 | 199 | 351 | 3.48e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1018360 | AT2G27110.2 | 51.471 | 68 | 33 | 0 | 113 | 180 | 229 | 296 | 9.36e-20 | 86.3 |
| Msa1018360 | AT2G27110.1 | 51.471 | 68 | 33 | 0 | 113 | 180 | 229 | 296 | 9.36e-20 | 86.3 |
| Msa1018360 | AT2G32250.8 | 29.437 | 231 | 109 | 9 | 1 | 180 | 1 | 228 | 1.43e-19 | 85.5 |
| Msa1018360 | AT2G32250.7 | 29.437 | 231 | 109 | 9 | 1 | 180 | 1 | 228 | 1.45e-19 | 85.5 |
| Msa1018360 | AT2G32250.2 | 29.437 | 231 | 109 | 9 | 1 | 180 | 42 | 269 | 1.47e-19 | 85.5 |
| Msa1018360 | AT2G32250.4 | 29.437 | 231 | 109 | 9 | 1 | 180 | 42 | 269 | 1.47e-19 | 85.5 |
| Msa1018360 | AT2G32250.5 | 29.437 | 231 | 109 | 9 | 1 | 180 | 42 | 269 | 1.49e-19 | 85.5 |
| Msa1018360 | AT2G32250.6 | 29.437 | 231 | 109 | 9 | 1 | 180 | 42 | 269 | 1.53e-19 | 85.5 |
| Msa1018360 | AT2G32250.1 | 29.437 | 231 | 109 | 9 | 1 | 180 | 42 | 269 | 1.53e-19 | 85.5 |
| Msa1018360 | AT2G32250.3 | 29.437 | 231 | 109 | 9 | 1 | 180 | 42 | 269 | 1.53e-19 | 85.5 |
| Msa1018360 | AT2G27110.3 | 51.471 | 68 | 33 | 0 | 113 | 180 | 84 | 151 | 1.64e-19 | 85.5 |
| Msa1018360 | AT1G80010.1 | 53.226 | 62 | 29 | 0 | 117 | 178 | 308 | 369 | 2.75e-19 | 84.7 |
| Msa1018360 | AT4G38180.1 | 48.529 | 68 | 35 | 0 | 113 | 180 | 282 | 349 | 1.88e-18 | 82.4 |
| Msa1018360 | AT4G38170.1 | 52.174 | 69 | 32 | 1 | 113 | 180 | 46 | 114 | 1.09e-17 | 80.1 |
| Msa1018360 | AT3G22170.2 | 26.054 | 261 | 112 | 7 | 1 | 180 | 74 | 334 | 3.32e-17 | 79.0 |
| Msa1018360 | AT3G22170.1 | 26.054 | 261 | 112 | 7 | 1 | 180 | 74 | 334 | 3.32e-17 | 79.0 |
| Msa1018360 | AT3G06250.2 | 47.059 | 68 | 36 | 0 | 113 | 180 | 358 | 425 | 1.69e-15 | 73.9 |
| Msa1018360 | AT3G06250.1 | 47.059 | 68 | 36 | 0 | 113 | 180 | 358 | 425 | 1.69e-15 | 73.9 |
| Msa1018360 | AT3G06250.3 | 47.059 | 68 | 36 | 0 | 113 | 180 | 358 | 425 | 1.69e-15 | 73.9 |
| Msa1018360 | AT5G18960.2 | 46.154 | 65 | 35 | 0 | 116 | 180 | 385 | 449 | 1.07e-14 | 71.6 |
| Msa1018360 | AT5G18960.1 | 46.154 | 65 | 35 | 0 | 116 | 180 | 385 | 449 | 1.07e-14 | 71.6 |
| Msa1018360 | AT4G15090.1 | 47.692 | 65 | 34 | 0 | 116 | 180 | 261 | 325 | 1.22e-14 | 71.6 |
| Msa1018360 | AT4G15090.5 | 47.692 | 65 | 34 | 0 | 116 | 180 | 261 | 325 | 1.22e-14 | 71.6 |
| Msa1018360 | AT4G15090.3 | 47.692 | 65 | 34 | 0 | 116 | 180 | 261 | 325 | 1.22e-14 | 71.6 |
| Msa1018360 | AT4G15090.2 | 47.692 | 65 | 34 | 0 | 116 | 180 | 261 | 325 | 1.22e-14 | 71.6 |
| Msa1018360 | AT4G15090.4 | 47.692 | 65 | 34 | 0 | 116 | 180 | 261 | 325 | 1.22e-14 | 71.6 |
| Msa1018360 | AT1G52520.1 | 37.879 | 66 | 41 | 0 | 113 | 178 | 280 | 345 | 9.50e-13 | 65.9 |
| Msa1018360 | AT1G76320.2 | 45.614 | 57 | 31 | 0 | 124 | 180 | 206 | 262 | 2.03e-12 | 65.1 |
| Msa1018360 | AT1G76320.2 | 32.787 | 122 | 63 | 5 | 1 | 107 | 1 | 118 | 3.63e-11 | 61.2 |
| Msa1018360 | AT1G76320.1 | 45.614 | 57 | 31 | 0 | 124 | 180 | 206 | 262 | 2.09e-12 | 65.1 |
| Msa1018360 | AT1G76320.1 | 32.787 | 122 | 63 | 5 | 1 | 107 | 1 | 118 | 3.70e-11 | 61.2 |
| Msa1018360 | AT1G76320.4 | 45.614 | 57 | 31 | 0 | 124 | 180 | 206 | 262 | 2.09e-12 | 65.1 |
| Msa1018360 | AT1G76320.4 | 32.787 | 122 | 63 | 5 | 1 | 107 | 1 | 118 | 3.70e-11 | 61.2 |
| Msa1018360 | AT1G76320.3 | 45.614 | 57 | 31 | 0 | 124 | 180 | 206 | 262 | 2.12e-12 | 65.1 |
| Msa1018360 | AT1G76320.3 | 32.787 | 122 | 63 | 5 | 1 | 107 | 1 | 118 | 3.71e-11 | 61.2 |
Find 24 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGCTAGATGTATAGGTTT+TGG | 0.261658 | 7_1:+38382156 | Msa1018360:CDS |
| AAGAATTATGCTAGATGTAT+AGG | 0.283443 | 7_1:+38382150 | Msa1018360:CDS |
| TAGTATCCTCCTTCGACAAT+AGG | 0.312589 | 7_1:-38382838 | None:intergenic |
| AGGGCTGCTTATGAGTATTT+TGG | 0.315150 | 7_1:+38382707 | Msa1018360:CDS |
| CTAAAATATCTTGATTTGCT+TGG | 0.342688 | 7_1:-38382399 | None:intergenic |
| AGTATCCTCCTTCGACAATA+GGG | 0.392582 | 7_1:-38382837 | None:intergenic |
| CATGGCCAGTCAGTTCTGTT+AGG | 0.399416 | 7_1:+38382809 | Msa1018360:CDS |
| TTAAATTTCATGCCAACCTT+AGG | 0.424975 | 7_1:-38382099 | None:intergenic |
| ATATTTATTTGTTAAGTAAG+TGG | 0.436838 | 7_1:-38382750 | None:intergenic |
| ACTCCAACAAAAGGAGCAAA+AGG | 0.476605 | 7_1:-38382779 | None:intergenic |
| TTTGGGCAGATGCGAGATGT+AGG | 0.485083 | 7_1:+38382687 | Msa1018360:intron |
| TAGCATGAAAACACACTGTA+AGG | 0.490277 | 7_1:+38382293 | Msa1018360:CDS |
| ATATAGAGCCTAGTATCAAA+AGG | 0.506691 | 7_1:+38382433 | Msa1018360:CDS |
| TTGGGCAGATGCGAGATGTA+GGG | 0.512318 | 7_1:+38382688 | Msa1018360:intron |
| TTTGTTGGAGTAAATCATCA+TGG | 0.515620 | 7_1:+38382791 | Msa1018360:CDS |
| TACTCACATAGCTTCTTGCA+CGG | 0.532062 | 7_1:-38382242 | None:intergenic |
| TGATGATTTACTCCAACAAA+AGG | 0.533599 | 7_1:-38382788 | None:intergenic |
| TGTTAAGTAAGTGGTGTCAA+AGG | 0.534449 | 7_1:-38382741 | None:intergenic |
| CAGAGATGGTGGTGAACCTA+AGG | 0.555055 | 7_1:+38382083 | None:intergenic |
| AGGTTGCGCCCTATTGTCGA+AGG | 0.587751 | 7_1:+38382829 | Msa1018360:CDS |
| GATGGTGGTGAACCTAAGGT+TGG | 0.604897 | 7_1:+38382087 | Msa1018360:five_prime_UTR |
| CGCAACCTAACAGAACTGAC+TGG | 0.644339 | 7_1:-38382814 | None:intergenic |
| ATTTAATTCTGCAGAGATGG+TGG | 0.651494 | 7_1:+38382072 | None:intergenic |
| TTGCGCCCTATTGTCGAAGG+AGG | 0.658239 | 7_1:+38382832 | Msa1018360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGGCTTTAAAATATTTT+TGG | - | chr7_1:38382271-38382290 | None:intergenic | 15.0% |
| !!! | TCTAACAAAATAATTTTGAA+TGG | - | chr7_1:38382595-38382614 | None:intergenic | 15.0% |
| !! | TAGAATGCAAAAAAAAAAAA+AGG | + | chr7_1:38382611-38382630 | Msa1018360:intron | 15.0% |
| !!! | ATATTTATTTGTTAAGTAAG+TGG | - | chr7_1:38382753-38382772 | None:intergenic | 15.0% |
| !!! | ATTTGGCTTTAAAATATTTT+TGG | - | chr7_1:38382271-38382290 | None:intergenic | 15.0% |
| !!! | TCTAACAAAATAATTTTGAA+TGG | - | chr7_1:38382595-38382614 | None:intergenic | 15.0% |
| !! | TAGAATGCAAAAAAAAAAAA+AGG | + | chr7_1:38382611-38382630 | Msa1018360:intron | 15.0% |
| !!! | ATATTTATTTGTTAAGTAAG+TGG | - | chr7_1:38382753-38382772 | None:intergenic | 15.0% |
| !!! | GAAAAAAGTTTTTTACTCTA+GGG | + | chr7_1:38382214-38382233 | Msa1018360:CDS | 20.0% |
| !!! | GAAATGTAAGTAGAAATTTT+CGG | + | chr7_1:38382457-38382476 | Msa1018360:CDS | 20.0% |
| !!! | AGGTCAATTTTTTTATGTAA+TGG | + | chr7_1:38382631-38382650 | Msa1018360:intron | 20.0% |
| !!! | ATTTTTTTATGTAATGGATG+TGG | + | chr7_1:38382637-38382656 | Msa1018360:intron | 20.0% |
| !!! | TTGTTTACGAAATGTTTTTT+GGG | + | chr7_1:38382670-38382689 | Msa1018360:intron | 20.0% |
| !!! | GAAAAAAGTTTTTTACTCTA+GGG | + | chr7_1:38382214-38382233 | Msa1018360:CDS | 20.0% |
| !!! | GAAATGTAAGTAGAAATTTT+CGG | + | chr7_1:38382457-38382476 | Msa1018360:CDS | 20.0% |
| !!! | AGGTCAATTTTTTTATGTAA+TGG | + | chr7_1:38382631-38382650 | Msa1018360:intron | 20.0% |
| !!! | ATTTTTTTATGTAATGGATG+TGG | + | chr7_1:38382637-38382656 | Msa1018360:intron | 20.0% |
| !!! | TTGTTTACGAAATGTTTTTT+GGG | + | chr7_1:38382670-38382689 | Msa1018360:intron | 20.0% |
| ! | AAGAATTATGCTAGATGTAT+AGG | + | chr7_1:38382150-38382169 | Msa1018360:CDS | 25.0% |
| ! | AGCAAAATCAGTACAAAAAA+TGG | + | chr7_1:38382183-38382202 | Msa1018360:CDS | 25.0% |
| !!! | GGAAAAAAGTTTTTTACTCT+AGG | + | chr7_1:38382213-38382232 | Msa1018360:CDS | 25.0% |
| !!! | TGGAACAATTACTATTTCTA+AGG | + | chr7_1:38382344-38382363 | Msa1018360:intron | 25.0% |
| !!! | CTAAAATATCTTGATTTGCT+TGG | - | chr7_1:38382402-38382421 | None:intergenic | 25.0% |
| !! | AAGTAGAAATTTTCGGTATA+TGG | + | chr7_1:38382464-38382483 | Msa1018360:CDS | 25.0% |
| ! | GGATACAATAATCTTACATT+CGG | + | chr7_1:38382501-38382520 | Msa1018360:intron | 25.0% |
| ! | GATACAATAATCTTACATTC+GGG | + | chr7_1:38382502-38382521 | Msa1018360:intron | 25.0% |
| ! | ATACAATAATCTTACATTCG+GGG | + | chr7_1:38382503-38382522 | Msa1018360:intron | 25.0% |
| !!! | GTTGTTTACGAAATGTTTTT+TGG | + | chr7_1:38382669-38382688 | Msa1018360:intron | 25.0% |
| !!! | AGGATACTAAAACTTTTTCT+TGG | + | chr7_1:38382852-38382871 | Msa1018360:CDS | 25.0% |
| ! | AAGAATTATGCTAGATGTAT+AGG | + | chr7_1:38382150-38382169 | Msa1018360:CDS | 25.0% |
| ! | AGCAAAATCAGTACAAAAAA+TGG | + | chr7_1:38382183-38382202 | Msa1018360:CDS | 25.0% |
| !!! | GGAAAAAAGTTTTTTACTCT+AGG | + | chr7_1:38382213-38382232 | Msa1018360:CDS | 25.0% |
| !!! | TGGAACAATTACTATTTCTA+AGG | + | chr7_1:38382344-38382363 | Msa1018360:intron | 25.0% |
| !!! | CTAAAATATCTTGATTTGCT+TGG | - | chr7_1:38382402-38382421 | None:intergenic | 25.0% |
| !! | AAGTAGAAATTTTCGGTATA+TGG | + | chr7_1:38382464-38382483 | Msa1018360:CDS | 25.0% |
| ! | GGATACAATAATCTTACATT+CGG | + | chr7_1:38382501-38382520 | Msa1018360:intron | 25.0% |
| ! | GATACAATAATCTTACATTC+GGG | + | chr7_1:38382502-38382521 | Msa1018360:intron | 25.0% |
| ! | ATACAATAATCTTACATTCG+GGG | + | chr7_1:38382503-38382522 | Msa1018360:intron | 25.0% |
| !!! | GTTGTTTACGAAATGTTTTT+TGG | + | chr7_1:38382669-38382688 | Msa1018360:intron | 25.0% |
| !!! | AGGATACTAAAACTTTTTCT+TGG | + | chr7_1:38382852-38382871 | Msa1018360:CDS | 25.0% |
| TTAAATTTCATGCCAACCTT+AGG | - | chr7_1:38382102-38382121 | None:intergenic | 30.0% | |
| ! | TATGCTAGATGTATAGGTTT+TGG | + | chr7_1:38382156-38382175 | Msa1018360:CDS | 30.0% |
| AGTACAAAAAATGGAGATGA+TGG | + | chr7_1:38382192-38382211 | Msa1018360:CDS | 30.0% | |
| AATGTATGTGTGTCTTTAGA+TGG | + | chr7_1:38382324-38382343 | Msa1018360:intron | 30.0% | |
| ATATAGAGCCTAGTATCAAA+AGG | + | chr7_1:38382433-38382452 | Msa1018360:CDS | 30.0% | |
| ! | ACATTTCTCCTTTTGATACT+AGG | - | chr7_1:38382444-38382463 | None:intergenic | 30.0% |
| TGATGATTTACTCCAACAAA+AGG | - | chr7_1:38382791-38382810 | None:intergenic | 30.0% | |
| TTTGTTGGAGTAAATCATCA+TGG | + | chr7_1:38382791-38382810 | Msa1018360:CDS | 30.0% | |
| TTAAATTTCATGCCAACCTT+AGG | - | chr7_1:38382102-38382121 | None:intergenic | 30.0% | |
| ! | TATGCTAGATGTATAGGTTT+TGG | + | chr7_1:38382156-38382175 | Msa1018360:CDS | 30.0% |
| AGTACAAAAAATGGAGATGA+TGG | + | chr7_1:38382192-38382211 | Msa1018360:CDS | 30.0% | |
| AATGTATGTGTGTCTTTAGA+TGG | + | chr7_1:38382324-38382343 | Msa1018360:intron | 30.0% | |
| ATATAGAGCCTAGTATCAAA+AGG | + | chr7_1:38382433-38382452 | Msa1018360:CDS | 30.0% | |
| ! | ACATTTCTCCTTTTGATACT+AGG | - | chr7_1:38382444-38382463 | None:intergenic | 30.0% |
| TGATGATTTACTCCAACAAA+AGG | - | chr7_1:38382791-38382810 | None:intergenic | 30.0% | |
| TTTGTTGGAGTAAATCATCA+TGG | + | chr7_1:38382791-38382810 | Msa1018360:CDS | 30.0% | |
| ! | TGTGTTTTCATGCTAGGATT+TGG | - | chr7_1:38382288-38382307 | None:intergenic | 35.0% |
| ! | TTACAGTGTGTTTTCATGCT+AGG | - | chr7_1:38382294-38382313 | None:intergenic | 35.0% |
| TAGCATGAAAACACACTGTA+AGG | + | chr7_1:38382293-38382312 | Msa1018360:CDS | 35.0% | |
| TATATGGTTGTTGAAGCAAG+TGG | + | chr7_1:38382480-38382499 | Msa1018360:intron | 35.0% | |
| GAAACTACATAGACAAAGTG+AGG | + | chr7_1:38382538-38382557 | Msa1018360:intron | 35.0% | |
| ! | TGTTAAGTAAGTGGTGTCAA+AGG | - | chr7_1:38382744-38382763 | None:intergenic | 35.0% |
| ! | TGTGTTTTCATGCTAGGATT+TGG | - | chr7_1:38382288-38382307 | None:intergenic | 35.0% |
| ! | TTACAGTGTGTTTTCATGCT+AGG | - | chr7_1:38382294-38382313 | None:intergenic | 35.0% |
| TAGCATGAAAACACACTGTA+AGG | + | chr7_1:38382293-38382312 | Msa1018360:CDS | 35.0% | |
| TATATGGTTGTTGAAGCAAG+TGG | + | chr7_1:38382480-38382499 | Msa1018360:intron | 35.0% | |
| GAAACTACATAGACAAAGTG+AGG | + | chr7_1:38382538-38382557 | Msa1018360:intron | 35.0% | |
| ! | TGTTAAGTAAGTGGTGTCAA+AGG | - | chr7_1:38382744-38382763 | None:intergenic | 35.0% |
| TACTCACATAGCTTCTTGCA+CGG | - | chr7_1:38382245-38382264 | None:intergenic | 40.0% | |
| ACTACATAGACAAAGTGAGG+CGG | + | chr7_1:38382541-38382560 | Msa1018360:intron | 40.0% | |
| ! | AGGGCTGCTTATGAGTATTT+TGG | + | chr7_1:38382707-38382726 | Msa1018360:CDS | 40.0% |
| ! | ATGCCTTTTGCTCCTTTTGT+TGG | + | chr7_1:38382776-38382795 | Msa1018360:CDS | 40.0% |
| ACTCCAACAAAAGGAGCAAA+AGG | - | chr7_1:38382782-38382801 | None:intergenic | 40.0% | |
| AGTATCCTCCTTCGACAATA+GGG | - | chr7_1:38382840-38382859 | None:intergenic | 40.0% | |
| TAGTATCCTCCTTCGACAAT+AGG | - | chr7_1:38382841-38382860 | None:intergenic | 40.0% | |
| TACTCACATAGCTTCTTGCA+CGG | - | chr7_1:38382245-38382264 | None:intergenic | 40.0% | |
| ACTACATAGACAAAGTGAGG+CGG | + | chr7_1:38382541-38382560 | Msa1018360:intron | 40.0% | |
| ! | AGGGCTGCTTATGAGTATTT+TGG | + | chr7_1:38382707-38382726 | Msa1018360:CDS | 40.0% |
| ! | ATGCCTTTTGCTCCTTTTGT+TGG | + | chr7_1:38382776-38382795 | Msa1018360:CDS | 40.0% |
| ACTCCAACAAAAGGAGCAAA+AGG | - | chr7_1:38382782-38382801 | None:intergenic | 40.0% | |
| AGTATCCTCCTTCGACAATA+GGG | - | chr7_1:38382840-38382859 | None:intergenic | 40.0% | |
| TAGTATCCTCCTTCGACAAT+AGG | - | chr7_1:38382841-38382860 | None:intergenic | 40.0% | |
| ! | GATGGTGGTGAACCTAAGGT+TGG | + | chr7_1:38382087-38382106 | Msa1018360:five_prime_UTR | 50.0% |
| TTTGGGCAGATGCGAGATGT+AGG | + | chr7_1:38382687-38382706 | Msa1018360:intron | 50.0% | |
| TTGGGCAGATGCGAGATGTA+GGG | + | chr7_1:38382688-38382707 | Msa1018360:intron | 50.0% | |
| CATGGCCAGTCAGTTCTGTT+AGG | + | chr7_1:38382809-38382828 | Msa1018360:CDS | 50.0% | |
| CGCAACCTAACAGAACTGAC+TGG | - | chr7_1:38382817-38382836 | None:intergenic | 50.0% | |
| ! | GATGGTGGTGAACCTAAGGT+TGG | + | chr7_1:38382087-38382106 | Msa1018360:five_prime_UTR | 50.0% |
| TTTGGGCAGATGCGAGATGT+AGG | + | chr7_1:38382687-38382706 | Msa1018360:intron | 50.0% | |
| TTGGGCAGATGCGAGATGTA+GGG | + | chr7_1:38382688-38382707 | Msa1018360:intron | 50.0% | |
| CATGGCCAGTCAGTTCTGTT+AGG | + | chr7_1:38382809-38382828 | Msa1018360:CDS | 50.0% | |
| CGCAACCTAACAGAACTGAC+TGG | - | chr7_1:38382817-38382836 | None:intergenic | 50.0% | |
| AAAGTGAGGCGGCTTCGACT+TGG | + | chr7_1:38382552-38382571 | Msa1018360:intron | 55.0% | |
| AAGTGAGGCGGCTTCGACTT+GGG | + | chr7_1:38382553-38382572 | Msa1018360:intron | 55.0% | |
| AGGTTGCGCCCTATTGTCGA+AGG | + | chr7_1:38382829-38382848 | Msa1018360:CDS | 55.0% | |
| TTGCGCCCTATTGTCGAAGG+AGG | + | chr7_1:38382832-38382851 | Msa1018360:CDS | 55.0% | |
| AAAGTGAGGCGGCTTCGACT+TGG | + | chr7_1:38382552-38382571 | Msa1018360:intron | 55.0% | |
| AAGTGAGGCGGCTTCGACTT+GGG | + | chr7_1:38382553-38382572 | Msa1018360:intron | 55.0% | |
| AGGTTGCGCCCTATTGTCGA+AGG | + | chr7_1:38382829-38382848 | Msa1018360:CDS | 55.0% | |
| TTGCGCCCTATTGTCGAAGG+AGG | + | chr7_1:38382832-38382851 | Msa1018360:CDS | 55.0% | |
| !! | AGGCGGCTTCGACTTGGGAC+AGG | + | chr7_1:38382558-38382577 | Msa1018360:intron | 65.0% |
| !! | AGGCGGCTTCGACTTGGGAC+AGG | + | chr7_1:38382558-38382577 | Msa1018360:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 38382086 | 38382886 | 38382086 | ID=Msa1018360;Name=Msa1018360 |
| chr7_1 | mRNA | 38382086 | 38382886 | 38382086 | ID=Msa1018360-mRNA-1;Parent=Msa1018360;Name=Msa1018360-mRNA-1;_AED=0.15;_eAED=0.27;_QI=25|0|0|1|0|0|3|0|180 |
| chr7_1 | exon | 38382086 | 38382326 | 38382086 | ID=Msa1018360-mRNA-1:exon:7432;Parent=Msa1018360-mRNA-1 |
| chr7_1 | exon | 38382366 | 38382498 | 38382366 | ID=Msa1018360-mRNA-1:exon:7433;Parent=Msa1018360-mRNA-1 |
| chr7_1 | exon | 38382696 | 38382886 | 38382696 | ID=Msa1018360-mRNA-1:exon:7434;Parent=Msa1018360-mRNA-1 |
| chr7_1 | five_prime_UTR | 38382086 | 38382110 | 38382086 | ID=Msa1018360-mRNA-1:five_prime_utr;Parent=Msa1018360-mRNA-1 |
| chr7_1 | CDS | 38382111 | 38382326 | 38382111 | ID=Msa1018360-mRNA-1:cds;Parent=Msa1018360-mRNA-1 |
| chr7_1 | CDS | 38382366 | 38382498 | 38382366 | ID=Msa1018360-mRNA-1:cds;Parent=Msa1018360-mRNA-1 |
| chr7_1 | CDS | 38382696 | 38382886 | 38382696 | ID=Msa1018360-mRNA-1:cds;Parent=Msa1018360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
