AlfalfaGEDB | Msa1018930

M. sativa cultivar zhongmu-4 / Msa1018930

KEGG: K11420
GO: -
PFAM: PF05033.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018930	AES79015.2	85.219	548	24	5	1	496	1	543	0.0	919

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018930	sp\|Q8GZB6\|SUVH4_ARATH	54.969	322	140	4	178	495	290	610	3.69e-119	366

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018930	G7KY38	85.219	548	24	5	1	496	1	543	0.0	919

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TFs/TRs:

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Gene ID	Type	Classification
Msa1018930	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018930	MtrunA17_Chr7g0234361	77.714	350	20	6	1	298	1	344	1.70e-175	497
Msa1018930	MtrunA17_Chr6g0476121	55.280	322	140	3	178	495	308	629	5.56e-117	358
Msa1018930	MtrunA17_Chr7g0252211	55.280	322	140	3	178	495	422	743	9.82e-117	360
Msa1018930	MtrunA17_Chr6g0476111	54.969	322	141	3	178	495	359	680	3.78e-116	357
Msa1018930	MtrunA17_Chr5g0399801	45.455	275	136	8	223	494	811	1074	2.77e-63	223
Msa1018930	MtrunA17_Chr4g0003511	42.652	279	146	9	219	494	770	1037	1.22e-58	209
Msa1018930	MtrunA17_Chr4g0003501	41.196	301	159	8	198	494	654	940	1.29e-58	208
Msa1018930	MtrunA17_Chr7g0255181	30.671	313	192	5	180	487	395	687	4.45e-44	165
Msa1018930	MtrunA17_Chr8g0368911	32.680	306	188	10	180	479	456	749	2.24e-42	160
Msa1018930	MtrunA17_Chr8g0368901	33.333	306	186	10	180	479	463	756	1.72e-41	158

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018930	AT5G13960.2	54.969	322	140	4	178	495	156	476	1.29e-120	362
Msa1018930	AT5G13960.1	54.969	322	140	4	178	495	290	610	3.76e-120	366
Msa1018930	AT2G22740.2	37.908	306	148	9	208	494	493	775	6.17e-50	183
Msa1018930	AT2G22740.1	37.908	306	148	9	208	494	493	775	6.17e-50	183
Msa1018930	AT2G35160.5	33.918	342	181	9	161	494	439	743	4.62e-49	180
Msa1018930	AT2G35160.2	33.918	342	181	9	161	494	475	779	9.11e-49	179
Msa1018930	AT2G35160.3	33.918	342	181	9	161	494	475	779	9.11e-49	179
Msa1018930	AT2G35160.1	33.918	342	181	9	161	494	475	779	9.11e-49	179
Msa1018930	AT2G35160.4	33.918	342	181	9	161	494	475	779	9.11e-49	179
Msa1018930	AT1G73100.1	30.556	360	232	7	123	479	294	638	1.15e-43	164

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Find 100 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCTTTCTTCTTCTCCA+AGG	0.531848	7_1:-39787428	Msa1018930:intron
AACTGACCATACCTCTCTTA+TGG	0.257716	7_1:+39789396	None:intergenic
AAGAGGAATACCTGATAGGG+AGG	0.649275	7_1:+39786020	None:intergenic
AAGCCTAGATGTTTCTCTCA+AGG	0.570477	7_1:+39789232	None:intergenic
AAGGTTGGGCGGTAAGAACA+TGG	0.558115	7_1:-39786501	Msa1018930:CDS
AAGTTTGGTATCAACAACAA+AGG	0.612619	7_1:-39789465	Msa1018930:CDS
AATGTTATTGTATGAAAACT+CGG	0.621218	7_1:+39786907	None:intergenic
ACAAAGAGGAATACCTGATA+GGG	0.490411	7_1:+39786017	None:intergenic
ACACATTGTACAAAGAGGTT+TGG	0.458185	7_1:+39786104	None:intergenic
ACACCAATATACTCGACAAC+TGG	0.483092	7_1:+39786457	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATGTTGAAAAGATTGAACT+TGG	-	chr7_1:39785912-39785931	Msa1018930:intron	30.0%
AAGTTTGGTATCAACAACAA+AGG	-	chr7_1:39785947-39785966	Msa1018930:intron	30.0%
TAGAAAAAGTTTAGACGAGT+TGG	-	chr7_1:39786361-39786380	Msa1018930:CDS	30.0%
TATATCCCTTCATTGATGTT+TGG	-	chr7_1:39786656-39786675	Msa1018930:CDS	30.0%
GATTTCCAAACATCAATGAA+GGG	+	chr7_1:39786664-39786683	None:intergenic	30.0%
TGATTTCCAAACATCAATGA+AGG	+	chr7_1:39786665-39786684	None:intergenic	30.0%
GAAGTCTATTAATATGGTTG+TGG	-	chr7_1:39787115-39787134	Msa1018930:intron	30.0%
TTTCTTGCTGCCAATTTATT+AGG	-	chr7_1:39787238-39787257	Msa1018930:intron	30.0%
GTATCTGATAAATAAGCTTC+GGG	-	chr7_1:39787444-39787463	Msa1018930:CDS	30.0%
CTTACAAAATCAGCTTGTAA+AGG	-	chr7_1:39787794-39787813	Msa1018930:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	39785783	39789651	39785783	ID=Msa1018930;Name=Msa1018930
chr7_1	mRNA	39785783	39789651	39785783	ID=Msa1018930-mRNA-1;Parent=Msa1018930;Name=Msa1018930-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|0\|0\|1\|0.9\|0.72\|11\|0\|496
chr7_1	exon	39789408	39789651	39789408	ID=Msa1018930-mRNA-1:exon:7709;Parent=Msa1018930-mRNA-1
chr7_1	exon	39789208	39789389	39789208	ID=Msa1018930-mRNA-1:exon:7708;Parent=Msa1018930-mRNA-1
chr7_1	exon	39788487	39788561	39788487	ID=Msa1018930-mRNA-1:exon:7707;Parent=Msa1018930-mRNA-1
chr7_1	exon	39787942	39788043	39787942	ID=Msa1018930-mRNA-1:exon:7706;Parent=Msa1018930-mRNA-1
chr7_1	exon	39787429	39787478	39787429	ID=Msa1018930-mRNA-1:exon:7705;Parent=Msa1018930-mRNA-1
chr7_1	exon	39787240	39787328	39787240	ID=Msa1018930-mRNA-1:exon:7704;Parent=Msa1018930-mRNA-1
chr7_1	exon	39786902	39787052	39786902	ID=Msa1018930-mRNA-1:exon:7703;Parent=Msa1018930-mRNA-1
chr7_1	exon	39786633	39786738	39786633	ID=Msa1018930-mRNA-1:exon:7702;Parent=Msa1018930-mRNA-1
chr7_1	exon	39786360	39786542	39786360	ID=Msa1018930-mRNA-1:exon:7701;Parent=Msa1018930-mRNA-1
chr7_1	exon	39786031	39786264	39786031	ID=Msa1018930-mRNA-1:exon:7700;Parent=Msa1018930-mRNA-1
chr7_1	exon	39785783	39785854	39785783	ID=Msa1018930-mRNA-1:exon:7699;Parent=Msa1018930-mRNA-1
chr7_1	CDS	39789408	39789651	39789408	ID=Msa1018930-mRNA-1:cds;Parent=Msa1018930-mRNA-1
chr7_1	CDS	39789208	39789389	39789208	ID=Msa1018930-mRNA-1:cds;Parent=Msa1018930-mRNA-1
chr7_1	CDS	39788487	39788561	39788487	ID=Msa1018930-mRNA-1:cds;Parent=Msa1018930-mRNA-1
chr7_1	CDS	39787942	39788043	39787942	ID=Msa1018930-mRNA-1:cds;Parent=Msa1018930-mRNA-1
chr7_1	CDS	39787429	39787478	39787429	ID=Msa1018930-mRNA-1:cds;Parent=Msa1018930-mRNA-1
chr7_1	CDS	39787240	39787328	39787240	ID=Msa1018930-mRNA-1:cds;Parent=Msa1018930-mRNA-1
chr7_1	CDS	39786902	39787052	39786902	ID=Msa1018930-mRNA-1:cds;Parent=Msa1018930-mRNA-1
chr7_1	CDS	39786633	39786738	39786633	ID=Msa1018930-mRNA-1:cds;Parent=Msa1018930-mRNA-1
chr7_1	CDS	39786360	39786542	39786360	ID=Msa1018930-mRNA-1:cds;Parent=Msa1018930-mRNA-1
chr7_1	CDS	39786031	39786264	39786031	ID=Msa1018930-mRNA-1:cds;Parent=Msa1018930-mRNA-1
chr7_1	CDS	39785783	39785854	39785783	ID=Msa1018930-mRNA-1:cds;Parent=Msa1018930-mRNA-1

Gene Sequence

>Msa1018930

ATGGAGGCTACTAAGAGTTCTGAAAATGAGGCTATGATGGTACCAACAAGAGTGAGTTCAAGACTTCAGAATCTCTCTAAGATTCAGTATAATATTTACAACAGCAGCGGCGACAAAGTTTTTGCCCAACATGTTGAAAAGATTGAACTTGGAAGTAAAGAGGAAAGTTTGGTATCAACAACAAAGGTTTGCTCACAACTTCAAAATGGAAACAAAATTCGAGATGATATTTCCCATAAGAGAGACAATGTTGTTGAGAAGAGAACCAAGCTCAACTCTTTGAGAAGAAAACCTCGCTGTCATTCAAGTTCAAGAAGTGGTTCAACAATCTCTCGTCCAATGTTCGTCTTTGATGGACTTGACTTTAGGGGCATTTTGTCCTTGAGAGAAACATCTAGGCTTGCCAATCTTCGTCTCCTTGCTAAGCAGGAAGAGAAAAATCAAAGCAAGAATCGACACAAGATAGGGAAAAATATTGCGACACTTTTGAGGGCAAGCAATGTAGAGAAAAATGGCATTGATAACGAATACGTTCCTGGAATCACTACTTCGAAGTATCTGATAAATAAGCTTCGGGAACTTGCTAAAGTGGGAACATACAAGGTTCATTTAATGGAAGGGCAAGTCTCTAAAACTCTTTCTTCTTCTCCAAGTTTGGTATGCAAGGACATTAGCAATGGACAAGAAGCTATCAGCATTATTGCAACCAATGATTTTGATGATCCTCCAGTTGCACCCACAGGTTTTGAATACATTACATCAAACAAATTTTCACCAAGCATTGAAGTTCCATCTAGTGCTGCGGGATGCAATTGCAAGGGAAGTTGTAGAACCAAACGATGTTCTTGTGCTAATCATAATGGCTCCGAGTTTTCATACAATAACATTGGCCGATTGATTGAGCCTCTAGACATCGTGGTCGAATGTGGACCGCAATGTGGATGCGGACCTAAATGTGGAAACAAAGTTTCTCAACAGGGCTTAAGTTACCGACTTGAGGTTTATCGTACTCCCAAGAAAGGTTGGGCGGTAAGAACATGGGACTTTATCCCATCAGGTGCACCAGTTGTCGAGTATATTGGTGTACTAAGTAGAGACGATGAGCTAGGAAGTGCCAACGGAAATGATTATATCTTCGATATTGATTGTTTGCACACAATCAATAGTGTAGATGGAAGAGAGAGACGGTTGGGTAATGTACCATTGCCTATAAACAATTTATCTGAAAAAAGAGACGAGTTAATGGAAAAAGATCCTGAATATTGCATAGATGCTGGTTCTTTTGGTAATGTTTCAAGATTTATCAACCATGGATGTGAGCCAAACCTCTTTGTACAATGTGTTCTCAGCAGCCACAGAGATCCTAGACTAGCTCGTGTAGTGCTATTTGCAGCAGAAGACATACCTCCCTATCAGGAACTCACCTATGACTATGGTTACACACTCGATAGTGTGTCTGGTTCTGATGGAAAAATCAAACAGCTACAA

Protein sequence

>Msa1018930

MEATKSSENEAMMVPTRVSSRLQNLSKIQYNIYNSSGDKVFAQHVEKIELGSKEESLVSTTKVCSQLQNGNKIRDDISHKRDNVVEKRTKLNSLRRKPRCHSSSRSGSTISRPMFVFDGLDFRGILSLRETSRLANLRLLAKQEEKNQSKNRHKIGKNIATLLRASNVEKNGIDNEYVPGITTSKYLINKLRELAKVGTYKVHLMEGQVSKTLSSSPSLVCKDISNGQEAISIIATNDFDDPPVAPTGFEYITSNKFSPSIEVPSSAAGCNCKGSCRTKRCSCANHNGSEFSYNNIGRLIEPLDIVVECGPQCGCGPKCGNKVSQQGLSYRLEVYRTPKKGWAVRTWDFIPSGAPVVEYIGVLSRDDELGSANGNDYIFDIDCLHTINSVDGRERRLGNVPLPINNLSEKRDELMEKDPEYCIDAGSFGNVSRFINHGCEPNLFVQCVLSSHRDPRLARVVLFAAEDIPPYQELTYDYGYTLDSVSGSDGKIKQLQ