AlfalfaGEDB | Msa1019360

M. sativa cultivar zhongmu-4 / Msa1019360

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1019360	AES79095.2	60.000	95	9	2	1	72	13	101	7.62e-22	93.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1019360	G7L066	60.000	95	9	2	1	72	13	101	3.64e-22	93.2

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TFs/TRs:

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Gene ID	Type	Classification
Msa1019360	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1019360	MtrunA17_Chr8g0351751	70.833	48	14	0	35	82	6	53	5.33e-15	67.0
Msa1019360	MtrunA17_Chr4g0014321	60.417	48	19	0	35	82	6	53	1.20e-11	57.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 13 sgRNAs with CRISPR-Local

Find 18 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATACAAGAAAACGAAGA+AGG	0.502252	7_1:-40975445	Msa1019360:CDS
AAGTTAAAGAGATTCTTGAA+CGG	0.683075	7_1:-40975724	Msa1019360:CDS
ACATACAAGAAAACGAAGAA+GGG	0.616612	7_1:-40975444	Msa1019360:CDS
ATAGTTACTCCTCCCACATA+AGG	0.498334	7_1:+40975683	None:intergenic
ATCTCACGTTATGGTTCACA+AGG	0.544170	7_1:+40975354	None:intergenic
CACTAACTACAATTCTACAA+AGG	0.644458	7_1:+40975391	None:intergenic
CCCACATAAGGACCTTTAAA+AGG	0.247852	7_1:+40975695	None:intergenic
GAAGAAGGGTCTGTTGAATA+AGG	0.356989	7_1:-40975430	Msa1019360:CDS
GGGAGGAGTAACTATGTTGG+TGG	0.612331	7_1:-40975675	Msa1019360:intron
TCTCACGTTATGGTTCACAA+GGG	0.748751	7_1:+40975355	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATACAAGAAAACGAAGA+AGG	-	chr7_1:40975675-40975694	Msa1019360:intron	30.0%
ACATACAAGAAAACGAAGAA+GGG	-	chr7_1:40975676-40975695	Msa1019360:CDS	30.0%
CACTAACTACAATTCTACAA+AGG	+	chr7_1:40975732-40975751	None:intergenic	30.0%
CAAAACCATGACTAGAGAAA+AGG	-	chr7_1:40975612-40975631	Msa1019360:intron	35.0%
CCCACATAAGGACCTTTAAA+AGG	+	chr7_1:40975428-40975447	None:intergenic	40.0%
TTTAAAGGTCCTTATGTGGG+AGG	-	chr7_1:40975428-40975447	Msa1019360:CDS	40.0%
ATAGTTACTCCTCCCACATA+AGG	+	chr7_1:40975440-40975459	None:intergenic	40.0%
GAAGAAGGGTCTGTTGAATA+AGG	-	chr7_1:40975690-40975709	Msa1019360:CDS	40.0%
TGTGGGAGGAGTAACTATGT+TGG	-	chr7_1:40975442-40975461	Msa1019360:CDS	45.0%
GGGAGGAGTAACTATGTTGG+TGG	-	chr7_1:40975445-40975464	Msa1019360:CDS	50.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	40975365	40975777	40975365	ID=Msa1019360;Name=Msa1019360
chr7_1	mRNA	40975365	40975777	40975365	ID=Msa1019360-mRNA-1;Parent=Msa1019360;Name=Msa1019360-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0\|0\|0\|1\|0\|0\|2\|0\|82
chr7_1	exon	40975676	40975777	40975676	ID=Msa1019360-mRNA-1:exon:7968;Parent=Msa1019360-mRNA-1
chr7_1	exon	40975365	40975508	40975365	ID=Msa1019360-mRNA-1:exon:7967;Parent=Msa1019360-mRNA-1
chr7_1	CDS	40975676	40975777	40975676	ID=Msa1019360-mRNA-1:cds;Parent=Msa1019360-mRNA-1
chr7_1	CDS	40975365	40975508	40975365	ID=Msa1019360-mRNA-1:cds;Parent=Msa1019360-mRNA-1

Gene Sequence	>Msa1019360 GAACGAGGAAGAGTAATTAATCAAAAAAATGAAGTTAAAGAGATTCTTGAACGGTGTAATCCTTTTAAAGGTCCTTATGTGGGAGGAGTAACTATGTTGGTGGTAAAACTTGAATTTAATGTAAATGATGCTGCAAGAAAAGCAACATACAAGAAAACGAAGAAGGGTCTGTTGAATAAGGTTGATGAACTAAGCATCCTTTGTAGAATTGTAGTTAGTGCTATAGTTTATGACCCTTGTGAACCA
Protein sequence	>Msa1019360 ERGRVINQKNEVKEILERCNPFKGPYVGGVTMLVVKLEFNVNDAARKATYKKTKKGLLNKVDELSILCRIVVSAIVYDPCEP