AlfalfaGEDB | Msa1021970

M. sativa cultivar zhongmu-4 / Msa1021970

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1021970	KEH32781.1	48.744	199	93	2	1	190	26	224	9.14e-53	186
Msa1021970	KEH32781.1	78.802	217	22	4	3	195	258	474	4.71e-106	323

Showing 1 to 2 of 2 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1021970	sp\|Q84R27\|Y3896_ARATH	40.909	88	52	0	1	88	43	130	2.35e-18	82.4

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1021970	A0A072UTW5	48.744	199	93	2	1	190	26	224	4.37e-53	186
Msa1021970	A0A072UTW5	78.802	217	22	4	3	195	258	474	2.25e-106	323

Showing 1 to 2 of 2 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1021970	TF	B3

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1021970	MtrunA17_Chr3g0077461	78.802	217	22	4	3	195	252	468	4.80e-110	322
Msa1021970	MtrunA17_Chr3g0077461	49.749	199	91	2	1	190	20	218	4.02e-58	189
Msa1021970	MtrunA17_Chr5g0429931	51.082	231	74	4	1	192	8	238	1.49e-70	214
Msa1021970	MtrunA17_Chr3g0077451	51.818	220	76	4	3	192	11	230	1.20e-66	204
Msa1021970	MtrunA17_Chr3g0077411	48.523	237	75	6	3	192	277	513	3.88e-61	198
Msa1021970	MtrunA17_Chr3g0077411	47.549	204	91	3	3	190	40	243	4.64e-55	182
Msa1021970	MtrunA17_Chr4g0009491	47.396	192	84	3	1	175	10	201	1.32e-50	169
Msa1021970	MtrunA17_Chr4g0009491	47.826	184	59	3	3	149	240	423	5.99e-46	156
Msa1021970	MtrunA17_Chr3g0077431	49.215	191	67	4	32	192	1	191	1.51e-50	162
Msa1021970	MtrunA17_Chr3g0077361	48.058	206	89	5	3	190	55	260	2.35e-50	169

Showing 1 to 10 of 44 entries

Previous1 2 3 4 5Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1021970	AT3G18960.3	42.529	87	50	0	2	88	7	93	6.63e-20	82.8
Msa1021970	AT3G18960.2	40.909	88	52	0	1	88	43	130	1.74e-19	82.4
Msa1021970	AT3G18960.1	40.909	88	52	0	1	88	43	130	2.39e-19	82.4
Msa1021970	AT4G01580.1	40.909	88	52	0	1	88	43	130	4.65e-19	81.3
Msa1021970	AT1G49475.1	37.255	102	63	1	1	102	47	147	1.25e-18	80.1
Msa1021970	AT3G18990.1	40.476	84	50	0	3	86	21	104	1.70e-17	79.3
Msa1021970	AT3G18990.2	40.476	84	50	0	3	86	21	104	2.07e-17	79.3
Msa1021970	AT4G31690.1	26.147	218	129	7	3	192	27	240	7.86e-11	60.1

Showing 1 to 8 of 8 entries

Previous1Next

Find 35 sgRNAs with CRISPR-Local

Find 47 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGCAATGGAAAGCAA+TGG	0.527431	7_1:-47189699	Msa1021970:CDS
AAATTGCAATGGAAAGCAAT+GGG	0.520291	7_1:-47189698	Msa1021970:CDS
AAATTGGAATTGAAGAAACG+TGG	0.603079	7_1:-47190175	Msa1021970:CDS
AATTTCCAAGTAAGACCATC+AGG	0.471155	7_1:+47190193	None:intergenic
ACTTTGAATTCCCTTCATAT+TGG	0.318436	7_1:+47190074	None:intergenic
AGGATTCCTTAGATTTGCAG+CGG	0.644386	7_1:-47189629	Msa1021970:CDS
AGGTTGTTCAGGACTGCAAT+TGG	0.452996	7_1:-47189656	Msa1021970:CDS
ATTGCTTTCCATTGCAATTT+TGG	0.107151	7_1:+47189701	None:intergenic
ATTGTTTCTCCATTAGTACT+TGG	0.459649	7_1:+47189995	None:intergenic
CGACGAAGTTGTAACACAAC+TGG	0.478088	7_1:+47189553	None:intergenic

Showing 1 to 10 of 35 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATTGGAATTGAAGAAACG+TGG	-	chr7_1:47189636-47189655	Msa1021970:CDS	30.0%
ACTTTGAATTCCCTTCATAT+TGG	+	chr7_1:47189740-47189759	None:intergenic	30.0%
TTGAAAACTCCAAGTACTAA+TGG	-	chr7_1:47189807-47189826	Msa1021970:intron	30.0%
TAATGGAGAAACAATTAGTG+AGG	-	chr7_1:47189824-47189843	Msa1021970:intron	30.0%
AAAATTGCAATGGAAAGCAA+TGG	-	chr7_1:47190112-47190131	Msa1021970:CDS	30.0%
AAATTGCAATGGAAAGCAAT+GGG	-	chr7_1:47190113-47190132	Msa1021970:CDS	30.0%
AATTTCCAAGTAAGACCATC+AGG	+	chr7_1:47189621-47189640	None:intergenic	35.0%
TTCCTGTCTTTCCAATATGA+AGG	-	chr7_1:47189726-47189745	Msa1021970:CDS	35.0%
TCCTGTCTTTCCAATATGAA+GGG	-	chr7_1:47189727-47189746	Msa1021970:CDS	35.0%
GAAACAATTAGTGAGGATGA+AGG	-	chr7_1:47189831-47189850	Msa1021970:intron	35.0%

Showing 1 to 10 of 47 entries

Previous1 2 3 4 5Next

Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	47189546	47190287	47189546	ID=Msa1021970;Name=Msa1021970
chr7_1	mRNA	47189546	47190287	47189546	ID=Msa1021970-mRNA-1;Parent=Msa1021970;Name=Msa1021970-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|0\|0\|1\|1\|1\|2\|0\|195
chr7_1	exon	47189934	47190287	47189934	ID=Msa1021970-mRNA-1:exon:9318;Parent=Msa1021970-mRNA-1
chr7_1	exon	47189546	47189779	47189546	ID=Msa1021970-mRNA-1:exon:9317;Parent=Msa1021970-mRNA-1
chr7_1	CDS	47189934	47190287	47189934	ID=Msa1021970-mRNA-1:cds;Parent=Msa1021970-mRNA-1
chr7_1	CDS	47189546	47189779	47189546	ID=Msa1021970-mRNA-1:cds;Parent=Msa1021970-mRNA-1

Gene Sequence

>Msa1021970

CTGCAGAGAATTCCAGAAAATTTTATAACAATATATGGGAGCGAACTCAAGAATGTTGCTACAATTACTGTACCTGATGGTCTTACTTGGAAATTGGAATTGAAGAAACGTGGAGAGGATGTTTACTTTTGCAACAAATGGAAACAGTTTGCAGAATACTATTCTTTAAGATACGGTTGCTTCCTGTCTTTCCAATATGAAGGGAATTCAAAGTTTAGTGTTATTATATTTGATGTAACTTTGGTTGTGATTTACTATCCATTGAAAACTCCAAGTACTAATGGAGAAACAATTAGTGAGGATGAAGGAACAGAAAACCCTTCTTTTACTTCTACCTATAAGTATAAAACTCTGTATATTAATGCTGATTTTGCATCAAAGTATCTGAAACGATATGTTGTTGTGAAGCTCCAAAATTGCAATGGAAAGCAATGGGATGTTACTTGTACACGTATAGGTTGTTCAGGACTGCAATTGGGGAAAGGATTCCTTAGATTTGCAGCGGACAACAATTTGTCGGACGGTGATAAATGCAAGGTTGAGTTGATTAAGAAATCGCCAGTTGTGTTACAACTTCGTCGTGTTTGA

Protein sequence

>Msa1021970

LQRIPENFITIYGSELKNVATITVPDGLTWKLELKKRGEDVYFCNKWKQFAEYYSLRYGCFLSFQYEGNSKFSVIIFDVTLVVIYYPLKTPSTNGETISEDEGTENPSFTSTYKYKTLYINADFASKYLKRYVVVKLQNCNGKQWDVTCTRIGCSGLQLGKGFLRFAADNNLSDGDKCKVELIKKSPVVLQLRRV*