AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1022290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1022290 MtrunA17_Chr7g0238921 94.322 317 18 0 1 317 1 317 0.0 624
Msa1022290 MtrunA17_Chr5g0418781 40.260 154 83 4 124 273 124 272 2.14e-25 102
Msa1022290 MtrunA17_Chr7g0270191 41.176 153 73 6 124 268 145 288 3.23e-23 97.1
Msa1022290 MtrunA17_Chr4g0051881 71.930 57 16 0 124 180 178 234 4.44e-23 97.4
Msa1022290 MtrunA17_Chr2g0294231 52.941 85 29 1 124 197 203 287 1.92e-22 96.3
Msa1022290 MtrunA17_Chr1g0194481 66.667 57 19 0 124 180 158 214 6.47e-22 94.0
Msa1022290 MtrunA17_Chr1g0150801 64.912 57 20 0 124 180 102 158 1.22e-21 89.7
Msa1022290 MtrunA17_Chr5g0443131 66.667 57 19 0 124 180 157 213 3.13e-21 92.0
Msa1022290 MtrunA17_Chr8g0383351 64.912 57 20 0 124 180 160 216 3.76e-21 90.1
Msa1022290 MtrunA17_Chr3g0129321 59.322 59 24 0 122 180 116 174 9.83e-21 88.6
Msa1022290 MtrunA17_Chr3g0106491 64.912 57 20 0 124 180 365 421 1.27e-20 92.0
Msa1022290 MtrunA17_Chr3g0106491 59.649 57 22 1 124 180 198 253 1.39e-14 74.3
Msa1022290 MtrunA17_Chr7g0224801 61.404 57 22 0 124 180 93 149 1.41e-20 87.0
Msa1022290 MtrunA17_Chr3g0129361 64.912 57 20 0 124 180 144 200 1.63e-20 88.2
Msa1022290 MtrunA17_Chr5g0445311 63.158 57 21 0 124 180 364 420 1.76e-20 91.7
Msa1022290 MtrunA17_Chr5g0445311 57.895 57 23 1 124 180 200 255 2.08e-13 70.9
Msa1022290 MtrunA17_Chr5g0418191 62.712 59 22 0 122 180 318 376 2.27e-20 90.9
Msa1022290 MtrunA17_Chr5g0418191 59.322 59 23 1 123 181 150 207 1.02e-14 74.3
Msa1022290 MtrunA17_Chr3g0101131 63.158 57 21 0 124 180 415 471 2.66e-20 91.3
Msa1022290 MtrunA17_Chr3g0101131 45.882 85 38 2 103 180 215 298 1.42e-13 71.2
Msa1022290 MtrunA17_Chr4g0068541 44.118 102 56 1 81 182 166 266 6.09e-20 89.7
Msa1022290 MtrunA17_Chr5g0432161 63.158 57 21 0 124 180 421 477 1.40e-19 89.4
Msa1022290 MtrunA17_Chr5g0432161 63.158 57 20 1 124 180 244 299 6.33e-16 78.2
Msa1022290 MtrunA17_Chr3g0079691 46.226 106 44 3 124 223 495 593 1.79e-19 89.0
Msa1022290 MtrunA17_Chr3g0079691 51.429 70 33 1 115 184 271 339 3.31e-14 73.2
Msa1022290 MtrunA17_Chr7g0218081 61.017 59 23 0 122 180 408 466 1.79e-19 89.0
Msa1022290 MtrunA17_Chr7g0218081 56.667 60 21 2 123 180 227 283 3.80e-13 69.7
Msa1022290 MtrunA17_Chr8g0335811 51.190 84 37 1 101 180 127 210 4.48e-19 84.3
Msa1022290 MtrunA17_Chr4g0042831 59.322 59 24 0 122 180 276 334 5.42e-19 86.7
Msa1022290 MtrunA17_Chr4g0042831 30.667 150 90 5 34 180 63 201 1.40e-14 73.9
Msa1022290 MtrunA17_Chr8g0383251 55.932 59 26 0 122 180 106 164 5.64e-19 83.2
Msa1022290 MtrunA17_Chr5g0447701 58.333 60 25 0 121 180 249 308 1.36e-18 85.5
Msa1022290 MtrunA17_Chr4g0074001 48.684 76 38 1 106 180 340 415 2.41e-18 85.5
Msa1022290 MtrunA17_Chr1g0188941 57.895 57 24 0 124 180 51 107 3.05e-18 79.0
Msa1022290 MtrunA17_Chr3g0136961 33.918 171 92 6 41 208 72 224 3.18e-18 83.2
Msa1022290 MtrunA17_Chr1g0147881 50.667 75 33 2 110 180 245 319 3.90e-18 83.6
Msa1022290 MtrunA17_Chr7g0263531 60.714 56 22 0 125 180 362 417 4.21e-18 84.3
Msa1022290 MtrunA17_Chr7g0263531 58.929 56 22 1 125 180 190 244 1.53e-13 70.9
Msa1022290 MtrunA17_Chr7g0243891 59.649 57 23 0 124 180 374 430 5.91e-18 84.3
Msa1022290 MtrunA17_Chr7g0243891 59.649 57 22 1 124 180 216 271 1.22e-15 77.4
Msa1022290 MtrunA17_Chr1g0184691 49.367 79 36 2 110 184 276 354 8.15e-18 83.2
Msa1022290 MtrunA17_Chr7g0248721 61.404 57 21 1 124 180 141 196 9.31e-18 80.5
Msa1022290 MtrunA17_Chr4g0004911 59.649 57 23 0 124 180 336 392 1.92e-17 82.8
Msa1022290 MtrunA17_Chr4g0004911 59.649 57 23 0 124 180 184 240 4.28e-17 81.6
Msa1022290 MtrunA17_Chr7g0270051 40.559 143 71 5 116 257 45 174 2.43e-17 80.5
Msa1022290 MtrunA17_Chr7g0249301 57.895 57 24 0 124 180 292 348 3.05e-17 81.6
Msa1022290 MtrunA17_Chr7g0249301 53.571 56 25 1 125 180 63 117 1.71e-11 64.3
Msa1022290 MtrunA17_Chr7g0249311 57.895 57 24 0 124 180 392 448 3.22e-17 82.4
Msa1022290 MtrunA17_Chr7g0249311 54.839 62 27 1 119 180 174 234 2.52e-13 70.5
Msa1022290 MtrunA17_Chr1g0150281 49.333 75 37 1 125 198 141 215 4.34e-17 80.1
Msa1022290 MtrunA17_Chr7g0228941 43.750 80 39 3 107 180 30 109 4.45e-17 76.3
Msa1022290 MtrunA17_Chr4g0071521 36.220 127 69 4 64 180 178 302 4.64e-17 80.5
Msa1022290 MtrunA17_Chr8g0386241 50.877 57 28 0 124 180 103 159 6.63e-17 77.4
Msa1022290 MtrunA17_Chr3g0139021 43.373 83 43 2 106 184 293 375 9.31e-17 80.1
Msa1022290 MtrunA17_Chr8g0379461 50.633 79 37 2 107 184 59 136 1.75e-16 77.4
Msa1022290 MtrunA17_Chr8g0348311 48.718 78 37 2 106 182 139 214 2.02e-16 79.0
Msa1022290 MtrunA17_Chr5g0401821 45.570 79 39 2 106 180 178 256 2.35e-16 77.8
Msa1022290 MtrunA17_Chr4g0053281 45.570 79 39 2 106 180 245 323 2.93e-16 78.2
Msa1022290 MtrunA17_Chr8g0387981 32.000 150 90 5 36 178 45 189 5.33e-16 77.8
Msa1022290 MtrunA17_Chr2g0333851 52.632 57 26 1 125 180 170 226 6.11e-16 77.0
Msa1022290 MtrunA17_Chr2g0293481 42.268 97 49 2 91 180 228 324 9.84e-16 77.4
Msa1022290 MtrunA17_Chr1g0202461 53.968 63 28 1 119 180 256 318 1.03e-15 77.0
Msa1022290 MtrunA17_Chr6g0485431 55.172 58 25 1 124 180 154 211 1.32e-15 76.6
Msa1022290 MtrunA17_Chr1g0189391 56.897 58 24 1 124 180 97 154 1.37e-15 76.3
Msa1022290 MtrunA17_Chr2g0284321 54.098 61 27 1 125 184 36 96 2.51e-15 73.9
Msa1022290 MtrunA17_Chr4g0060271 58.621 58 23 1 124 180 255 312 4.51e-15 75.9
Msa1022290 MtrunA17_Chr2g0322391 42.857 91 48 3 95 184 323 410 4.77e-15 75.9
Msa1022290 MtrunA17_Chr7g0216891 48.611 72 35 2 110 180 206 276 6.00e-15 75.5
Msa1022290 MtrunA17_Chr3g0099641 54.098 61 27 1 125 184 252 312 7.16e-15 75.1
Msa1022290 MtrunA17_Chr8g0387501 53.226 62 28 1 120 180 125 186 8.38e-15 73.2
Msa1022290 MtrunA17_Chr2g0319961 57.895 57 23 1 125 180 81 137 1.11e-14 72.8
Msa1022290 MtrunA17_Chr7g0248691 38.462 117 67 3 122 233 152 268 1.30e-14 73.6
Msa1022290 MtrunA17_Chr4g0051181 47.222 72 36 2 110 180 230 300 1.35e-14 74.3
Msa1022290 MtrunA17_Chr3g0126391 57.377 61 23 1 121 178 130 190 1.44e-14 73.6
Msa1022290 MtrunA17_Chr7g0270831 45.556 90 33 2 92 180 199 273 1.57e-14 73.9
Msa1022290 MtrunA17_Chr4g0075201 56.897 58 24 1 124 180 267 324 1.90e-14 73.6
Msa1022290 MtrunA17_Chr2g0288871 38.938 113 52 3 70 180 265 362 2.37e-14 73.6
Msa1022290 MtrunA17_Chr4g0001361 52.632 57 26 1 125 180 163 219 3.79e-14 72.0
Msa1022290 MtrunA17_Chr2g0289181 53.333 60 27 1 122 180 12 71 1.00e-13 69.7
Msa1022290 MtrunA17_Chr1g0150271 50.877 57 27 1 125 180 102 158 1.07e-13 69.7
Msa1022290 MtrunA17_Chr2g0302391 52.632 57 26 1 125 180 212 268 7.95e-13 68.6
Msa1022290 MtrunA17_Chr7g0275531 49.275 69 28 2 117 178 107 175 1.28e-12 67.4
Msa1022290 MtrunA17_Chr8g0347251 44.737 76 35 2 110 178 118 193 3.41e-12 66.2
Msa1022290 MtrunA17_Chr5g0432071 50.000 58 28 1 124 181 104 160 4.95e-12 64.3
Msa1022290 MtrunA17_Chr8g0334541 53.448 58 24 1 124 178 103 160 1.95e-11 63.5
Msa1022290 MtrunA17_Chr8g0350621 51.724 58 25 1 124 178 111 168 2.55e-11 63.2
Msa1022290 MtrunA17_Chr4g0025051 50.877 57 27 1 125 180 336 392 2.73e-11 64.3
Msa1022290 MtrunA17_Chr2g0315381 49.231 65 30 1 122 183 142 206 5.70e-11 62.4
Msa1022290 MtrunA17_Chr7g0244981 51.724 58 25 1 124 178 122 179 6.38e-11 62.0
Msa1022290 MtrunA17_Chr3g0128671 52.632 57 24 1 125 178 128 184 7.19e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1022290 AT5G43290.1 42.642 265 114 12 30 275 21 266 2.74e-52 173
Msa1022290 AT1G69310.4 41.558 154 74 4 124 274 147 287 5.27e-28 110
Msa1022290 AT1G69310.2 41.558 154 74 4 124 274 147 287 5.27e-28 110
Msa1022290 AT1G69310.1 41.558 154 74 4 124 274 147 287 5.27e-28 110
Msa1022290 AT5G49520.1 32.597 181 100 3 124 285 221 398 1.08e-23 100
Msa1022290 AT1G69310.3 38.961 154 74 5 124 274 147 283 1.22e-22 95.9
Msa1022290 AT4G39410.1 55.844 77 34 0 124 200 223 299 1.31e-22 96.3
Msa1022290 AT2G47260.1 66.102 59 20 0 124 182 174 232 1.80e-22 96.3
Msa1022290 AT1G29860.1 68.421 57 18 0 124 180 136 192 3.74e-22 94.4
Msa1022290 AT4G18170.1 68.421 57 18 0 124 180 172 228 7.27e-22 94.4
Msa1022290 AT2G25000.1 33.702 181 101 7 13 180 29 203 1.35e-21 92.8
Msa1022290 AT1G64000.1 64.912 57 20 0 124 180 114 170 1.43e-21 90.9
Msa1022290 AT5G46350.1 66.667 57 19 0 124 180 183 239 4.39e-21 92.4
Msa1022290 AT2G04880.2 63.077 65 24 0 124 188 283 347 7.48e-21 93.2
Msa1022290 AT2G04880.2 67.500 40 13 0 124 163 111 150 1.93e-11 65.1
Msa1022290 AT2G03340.1 62.712 59 22 0 122 180 413 471 7.53e-21 93.2
Msa1022290 AT2G03340.1 45.833 96 40 3 93 180 214 305 9.06e-15 75.1
Msa1022290 AT1G13960.2 62.712 59 22 0 122 180 254 312 7.56e-21 92.0
Msa1022290 AT1G13960.2 62.069 58 21 1 123 180 75 131 4.45e-15 75.5
Msa1022290 AT2G04880.1 63.077 65 24 0 124 188 307 371 1.01e-20 92.8
Msa1022290 AT2G04880.1 67.500 40 13 0 124 163 111 150 1.67e-11 65.1
Msa1022290 AT1G13960.1 62.712 59 22 0 122 180 407 465 1.04e-20 92.8
Msa1022290 AT1G13960.1 62.069 58 21 1 123 180 228 284 3.85e-15 76.3
Msa1022290 AT5G41570.1 63.158 57 21 0 124 180 98 154 1.33e-20 87.8
Msa1022290 AT2G25000.3 34.132 167 92 6 27 180 21 182 3.76e-20 88.2
Msa1022290 AT5G13080.1 61.404 57 22 0 124 180 67 123 4.36e-20 85.5
Msa1022290 AT5G07100.2 63.158 57 21 0 124 180 141 197 5.23e-20 87.0
Msa1022290 AT5G07100.2 54.098 61 28 0 120 180 20 80 2.00e-14 71.6
Msa1022290 AT5G07100.4 63.158 57 21 0 124 180 141 197 5.23e-20 87.0
Msa1022290 AT5G07100.4 54.098 61 28 0 120 180 20 80 2.00e-14 71.6
Msa1022290 AT5G07100.5 63.158 57 21 0 124 180 141 197 5.23e-20 87.0
Msa1022290 AT5G07100.5 54.098 61 28 0 120 180 20 80 2.00e-14 71.6
Msa1022290 AT5G07100.3 63.158 57 21 0 124 180 141 197 5.23e-20 87.0
Msa1022290 AT5G07100.3 54.098 61 28 0 120 180 20 80 2.00e-14 71.6
Msa1022290 AT3G62340.1 64.912 57 20 0 124 180 118 174 5.90e-20 88.2
Msa1022290 AT2G25000.2 33.939 165 91 6 29 180 1 160 8.21e-20 86.7
Msa1022290 AT2G25000.4 33.939 165 91 6 29 180 1 160 8.21e-20 86.7
Msa1022290 AT2G46130.1 63.158 57 21 0 124 180 30 86 8.96e-20 83.6
Msa1022290 AT3G01970.1 59.649 57 23 0 124 180 65 121 1.39e-19 84.0
Msa1022290 AT5G07100.1 63.158 57 21 0 124 180 234 290 1.53e-19 87.8
Msa1022290 AT5G07100.1 39.450 109 48 2 120 228 113 203 2.09e-14 73.2
Msa1022290 AT5G56270.1 63.158 57 21 0 124 180 487 543 2.08e-19 89.4
Msa1022290 AT5G56270.1 57.576 66 27 1 119 184 268 332 2.90e-16 79.7
Msa1022290 AT3G01080.2 38.400 125 63 3 122 246 342 452 3.89e-19 87.8
Msa1022290 AT3G01080.2 59.649 57 22 1 124 180 205 260 2.54e-13 70.9
Msa1022290 AT3G01080.1 61.017 59 23 0 122 180 304 362 4.68e-19 87.4
Msa1022290 AT3G01080.1 58.621 58 23 1 123 180 166 222 3.10e-13 70.5
Msa1022290 AT5G26170.1 57.895 57 24 0 124 180 113 169 4.80e-19 83.2
Msa1022290 AT2G44745.1 63.793 58 21 0 124 181 145 202 5.81e-19 84.3
Msa1022290 AT4G26640.5 61.404 57 22 0 124 180 205 261 9.31e-19 86.3
Msa1022290 AT4G26640.5 59.322 59 23 1 122 180 33 90 5.81e-14 72.4
Msa1022290 AT4G26640.6 61.404 57 22 0 124 180 205 261 9.31e-19 86.3
Msa1022290 AT4G26640.6 59.322 59 23 1 122 180 33 90 5.81e-14 72.4
Msa1022290 AT4G26640.4 61.404 57 22 0 124 180 205 261 9.31e-19 86.3
Msa1022290 AT4G26640.4 59.322 59 23 1 122 180 33 90 5.81e-14 72.4
Msa1022290 AT4G26640.3 61.404 57 22 0 124 180 205 261 9.31e-19 86.3
Msa1022290 AT4G26640.3 59.322 59 23 1 122 180 33 90 5.81e-14 72.4
Msa1022290 AT4G26640.7 61.404 57 22 0 124 180 341 397 9.61e-19 87.0
Msa1022290 AT4G26640.7 59.322 59 23 1 122 180 169 226 4.95e-14 72.8
Msa1022290 AT4G26640.2 61.404 57 22 0 124 180 381 437 1.02e-18 87.0
Msa1022290 AT4G26640.2 59.322 59 23 1 122 180 209 266 5.34e-14 72.8
Msa1022290 AT4G26640.1 61.404 57 22 0 124 180 309 365 1.08e-18 86.7
Msa1022290 AT4G26640.1 59.322 59 23 1 122 180 137 194 5.67e-14 72.8
Msa1022290 AT2G38470.1 61.404 57 22 0 124 180 362 418 6.02e-18 84.7
Msa1022290 AT2G38470.1 62.069 58 21 1 123 180 183 239 1.11e-15 77.8
Msa1022290 AT4G31550.1 50.667 75 33 2 110 180 229 303 8.98e-18 82.8
Msa1022290 AT4G31550.2 50.667 75 33 2 110 180 228 302 9.60e-18 82.8
Msa1022290 AT5G64810.1 54.386 57 26 0 124 180 110 166 9.99e-18 80.5
Msa1022290 AT2G21900.1 54.386 57 26 0 124 180 109 165 1.27e-17 80.1
Msa1022290 AT4G30935.1 46.835 79 41 1 103 180 309 387 1.35e-17 83.6
Msa1022290 AT4G30935.1 53.571 56 25 1 125 180 169 223 3.34e-11 64.3
Msa1022290 AT4G31800.2 54.237 59 26 1 125 182 112 170 1.46e-17 80.9
Msa1022290 AT1G55600.1 54.098 61 28 0 124 184 307 367 1.47e-17 83.6
Msa1022290 AT2G30250.1 62.500 56 21 0 125 180 329 384 1.85e-17 82.8
Msa1022290 AT2G30250.1 56.140 57 24 1 124 180 166 221 1.84e-12 67.8
Msa1022290 AT2G23320.1 46.835 79 38 2 106 180 219 297 2.20e-17 81.6
Msa1022290 AT4G31800.1 54.237 59 26 1 125 182 177 235 2.55e-17 81.3
Msa1022290 AT2G34830.1 34.254 181 90 7 21 180 100 272 3.52e-17 82.0
Msa1022290 AT2G34830.2 41.322 121 59 3 72 180 161 281 4.20e-17 82.0
Msa1022290 AT5G28650.1 49.367 79 36 2 106 180 241 319 4.54e-17 80.9
Msa1022290 AT2G37260.2 57.895 57 24 0 124 180 267 323 5.18e-17 80.9
Msa1022290 AT2G37260.2 58.929 56 22 1 125 180 84 138 4.73e-14 72.4
Msa1022290 AT2G37260.3 57.895 57 24 0 124 180 269 325 5.27e-17 80.9
Msa1022290 AT2G37260.3 58.929 56 22 1 125 180 86 140 4.70e-14 72.4
Msa1022290 AT2G37260.1 57.895 57 24 0 124 180 349 405 5.37e-17 81.6
Msa1022290 AT2G37260.1 58.929 56 22 1 125 180 166 220 4.17e-14 72.8
Msa1022290 AT4G26440.1 56.897 58 25 0 124 181 372 429 7.50e-17 81.6
Msa1022290 AT4G26440.1 46.154 91 33 2 124 214 178 252 4.39e-16 79.3
Msa1022290 AT2G30590.1 42.708 96 49 3 93 184 281 374 9.36e-17 80.5
Msa1022290 AT3G04670.1 48.101 79 37 2 106 180 241 319 1.61e-16 79.3
Msa1022290 AT5G52830.1 60.000 60 23 1 122 180 163 222 1.62e-16 79.7
Msa1022290 AT1G30650.1 44.248 113 53 4 77 180 163 274 3.17e-16 79.3
Msa1022290 AT2G24570.1 49.333 75 34 2 110 180 226 300 3.41e-16 78.2
Msa1022290 AT1G80840.1 54.386 57 25 1 125 180 147 203 9.61e-16 76.6
Msa1022290 AT4G01250.1 48.718 78 37 2 106 182 112 187 1.32e-15 76.3
Msa1022290 AT1G29280.1 57.895 57 23 1 125 180 75 131 1.65e-15 75.5
Msa1022290 AT1G68150.1 44.578 83 44 2 99 180 211 292 1.98e-15 76.6
Msa1022290 AT4G24240.1 41.758 91 47 3 94 180 250 338 2.44e-15 76.3
Msa1022290 AT1G62300.1 40.206 97 56 2 86 180 273 369 3.25e-15 76.6
Msa1022290 AT2G46400.1 48.148 81 34 2 106 178 81 161 5.69e-15 74.3
Msa1022290 AT5G15130.1 56.897 58 24 1 124 180 227 284 9.76e-15 75.1
Msa1022290 AT5G15130.2 56.897 58 24 1 124 180 185 242 1.03e-14 75.1
Msa1022290 AT3G58710.1 59.649 57 22 1 125 180 72 128 1.22e-14 73.2
Msa1022290 AT3G58710.2 59.649 57 22 1 125 180 71 127 1.24e-14 73.2
Msa1022290 AT2G46130.2 56.140 57 21 1 124 180 30 82 1.65e-14 68.9
Msa1022290 AT5G45050.1 46.429 84 42 2 100 180 1154 1237 1.89e-14 74.7
Msa1022290 AT5G45050.2 46.429 84 42 2 100 180 1126 1209 1.90e-14 74.7
Msa1022290 AT5G45050.4 46.429 84 42 2 100 180 1015 1098 2.44e-14 74.3
Msa1022290 AT4G23550.1 55.000 60 26 1 122 180 138 197 2.73e-14 72.8
Msa1022290 AT2G40740.1 56.897 58 22 1 124 178 173 230 3.76e-14 72.0
Msa1022290 AT2G40740.3 56.897 58 22 1 124 178 182 239 4.43e-14 72.0
Msa1022290 AT4G04450.2 53.125 64 29 1 125 187 199 262 5.73e-14 72.4
Msa1022290 AT1G18860.1 45.783 83 42 3 99 180 216 296 7.12e-14 72.4
Msa1022290 AT4G04450.1 53.125 64 29 1 125 187 293 356 1.00e-13 72.0
Msa1022290 AT3G01080.3 59.649 57 22 1 124 180 205 260 1.25e-13 70.9
Msa1022290 AT4G22070.4 55.738 61 26 1 125 184 298 358 1.45e-13 71.6
Msa1022290 AT4G22070.3 55.738 61 26 1 125 184 298 358 1.45e-13 71.6
Msa1022290 AT4G22070.2 55.738 61 26 1 125 184 298 358 1.45e-13 71.6
Msa1022290 AT4G22070.1 55.738 61 26 1 125 184 298 358 1.45e-13 71.6
Msa1022290 AT4G01720.1 55.172 58 25 1 124 180 239 296 1.10e-12 68.9
Msa1022290 AT5G24110.1 35.897 117 58 4 79 178 54 170 1.67e-12 67.4
Msa1022290 AT4G11070.2 52.459 61 26 1 121 178 106 166 3.30e-12 66.2
Msa1022290 AT4G11070.1 52.459 61 26 1 121 178 138 198 3.43e-12 66.6
Msa1022290 AT1G66560.1 49.153 59 27 1 124 179 103 161 5.38e-12 65.1
Msa1022290 AT5G01900.1 41.121 107 48 5 125 216 111 217 1.64e-11 63.9
Msa1022290 AT2G40750.1 50.000 58 26 1 124 178 152 209 2.14e-11 64.3
Msa1022290 AT4G23810.1 50.820 61 27 1 121 178 155 215 2.20e-11 64.3
Msa1022290 AT1G69810.1 49.153 59 28 2 124 180 203 261 3.44e-11 63.9
Msa1022290 AT1G69810.2 49.153 59 28 2 124 180 145 203 4.06e-11 63.5
Msa1022290 AT1G66550.2 44.444 63 32 1 124 183 103 165 7.10e-11 62.0
Msa1022290 AT1G66550.1 35.052 97 46 3 101 183 77 170 7.69e-11 62.0

Find 86 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAACTTCACTTGCTTTA+TGG 0.118410 7_1:-48311391 None:intergenic
TGAAGATATGGTCCCGTTTA+TGG 0.176330 7_1:+48311538 Msa1022290:CDS
TTGTGTACGGTCTAATAAAA+TGG 0.196428 7_1:-48311477 None:intergenic
TATAATTGAAATATGAATTT+AGG 0.224485 7_1:-48308740 None:intergenic
CTTCACTTGCTTTATGGTCT+TGG 0.238976 7_1:-48311385 None:intergenic
TCAAGAGTTTACCTAGGATT+TGG 0.242876 7_1:-48309376 None:intergenic
TTCATTTCAAATATTTATTC+AGG 0.250036 7_1:+48308976 Msa1022290:CDS
TTGATGAAAATTGTTGAAAT+TGG 0.253295 7_1:-48309050 None:intergenic
CCTCCAGCATCCTGGACTTC+TGG 0.254663 7_1:+48311629 Msa1022290:CDS
ATACATATTAATTATTTAAA+TGG 0.263117 7_1:-48311696 None:intergenic
AGCCCAATCTAGTAATTCTT+TGG 0.285857 7_1:+48311442 Msa1022290:CDS
AGAAAATAATGTCTTCTAAT+TGG 0.303170 7_1:+48308824 Msa1022290:CDS
ATTGTTGAAATTGGTTACTA+TGG 0.305605 7_1:-48309041 None:intergenic
AATTACTAGATTGGGCTTCA+TGG 0.316924 7_1:-48311436 None:intergenic
TTCACTTGCTTTATGGTCTT+GGG 0.328292 7_1:-48311384 None:intergenic
CAAGAGTTTACCTAGGATTT+GGG 0.328816 7_1:-48309375 None:intergenic
GGATATAGGTGGAGGAAGTA+TGG 0.340368 7_1:+48309331 Msa1022290:CDS
GATTGTCCCACAATGAAATA+AGG 0.342217 7_1:-48311299 None:intergenic
TTCCAAAGAATTACTAGATT+GGG 0.346671 7_1:-48311444 None:intergenic
GCTTATCCTTATTTCATTGT+GGG 0.365646 7_1:+48311293 Msa1022290:CDS
AGGATTTGGGCTATTCTTGA+TGG 0.375798 7_1:-48309362 None:intergenic
GTTCCAAAGAATTACTAGAT+TGG 0.392838 7_1:-48311445 None:intergenic
AAATGAACCTATTAAAAGCT+TGG 0.401637 7_1:-48308960 None:intergenic
TGGACTTCTTCATTGGTGGA+TGG 0.401908 7_1:-48311337 None:intergenic
TGCTTATCCTTATTTCATTG+TGG 0.405031 7_1:+48311292 Msa1022290:CDS
GCTTCTTAGCACCACACCTT+GGG 0.406138 7_1:-48311202 None:intergenic
CTCCATCATTGTCTTTGACA+TGG 0.406707 7_1:-48308803 None:intergenic
TAAGTGATTATGAGAGTGTC+AGG 0.409746 7_1:-48311248 None:intergenic
GCCTTGGACTTCTTCATTGG+TGG 0.411270 7_1:-48311341 None:intergenic
TGAAGAATCATGACTTAAGT+TGG 0.411681 7_1:-48308932 None:intergenic
GATTGGGTGATGATGGATAT+AGG 0.412049 7_1:+48309317 Msa1022290:CDS
ACTTTGAAAATCAAATGCTT+TGG 0.412320 7_1:+48309289 Msa1022290:CDS
GTAGCCTTGGACTTCTTCAT+TGG 0.412428 7_1:-48311344 None:intergenic
TCACCATCAACATTGTTTGT+AGG 0.413938 7_1:-48311569 None:intergenic
TCCCCTGCTTGTTATGCCGT+TGG 0.415602 7_1:+48311662 Msa1022290:CDS
GATACGGTCCAAGAAAATTT+CGG 0.416624 7_1:+48311500 Msa1022290:CDS
CACCATCAACATTGTTTGTA+GGG 0.418188 7_1:-48311568 None:intergenic
AGAAGGGTTGCTTGAAGATA+TGG 0.422809 7_1:+48311526 Msa1022290:CDS
AGGAGAAAGGTGTGAGGAGA+AGG 0.422919 7_1:-48311609 None:intergenic
GGACTTCTTCATTGGTGGAT+GGG 0.423548 7_1:-48311336 None:intergenic
GTAGGGTTCCTAACCATAAA+CGG 0.425062 7_1:-48311551 None:intergenic
ATATGGTCCCGTTTATGGTT+AGG 0.432058 7_1:+48311543 Msa1022290:CDS
ACCTTTCTCCTCCAGCATCC+TGG 0.439513 7_1:+48311621 Msa1022290:CDS
GAGAGTGTCAGGGTCTTCAT+TGG 0.440141 7_1:-48311237 None:intergenic
TCCTTGTGAAGAGGTAGCCT+TGG 0.445914 7_1:-48311357 None:intergenic
AAATGCTTTGGCAATGGATT+GGG 0.447270 7_1:+48309301 Msa1022290:CDS
CAAGAAAATTTCGGCTCAGA+AGG 0.452520 7_1:+48311509 Msa1022290:CDS
AACCCTACAAACAATGTTGA+TGG 0.457476 7_1:+48311566 Msa1022290:CDS
GGCAATGGATTGGGTGATGA+TGG 0.465004 7_1:+48309310 Msa1022290:CDS
AAGCCAACGGCATAACAAGC+AGG 0.467197 7_1:-48311665 None:intergenic
AAAATCAAATGCTTTGGCAA+TGG 0.467382 7_1:+48309295 Msa1022290:CDS
CAACCAGAAGTCCAGGATGC+TGG 0.475602 7_1:-48311632 None:intergenic
CAAATGCTTTGGCAATGGAT+TGG 0.479073 7_1:+48309300 Msa1022290:CDS
TGTGTACGGTCTAATAAAAT+GGG 0.481408 7_1:-48311476 None:intergenic
TAGGGTTCCTAACCATAAAC+GGG 0.487020 7_1:-48311550 None:intergenic
CTTGCTTTATGGTCTTGGGT+TGG 0.490234 7_1:-48311380 None:intergenic
CTTGGACCGTATCTTGTGTA+CGG 0.499259 7_1:-48311490 None:intergenic
TCAAGAATAGCCCAAATCCT+AGG 0.505398 7_1:+48309365 Msa1022290:CDS
GAACAAACAGGAGTTACTAT+AGG 0.514245 7_1:+48311171 Msa1022290:intron
GGCATAACAAGCAGGGGAAG+TGG 0.517773 7_1:-48311657 None:intergenic
ATTAGACCGTACACAAGATA+CGG 0.519198 7_1:+48311484 Msa1022290:CDS
ACTCTCATAATCACTTATGA+AGG 0.527480 7_1:+48311254 Msa1022290:CDS
TCCAGGATGCTGGAGGAGAA+AGG 0.531282 7_1:-48311622 None:intergenic
TGCTTCTTAGCACCACACCT+TGG 0.538042 7_1:-48311203 None:intergenic
AGTGGAACAACCAGAAGTCC+AGG 0.540019 7_1:-48311639 None:intergenic
AATGGTAGAATTTAAGCCAA+CGG 0.540942 7_1:-48311678 None:intergenic
ATCCATGTCAAAGACAATGA+TGG 0.541467 7_1:+48308801 Msa1022290:CDS
TTGGGTTGGTCCTTGTGAAG+AGG 0.546121 7_1:-48311366 None:intergenic
AAGGTGTGGTGCTAAGAAGC+AGG 0.570713 7_1:+48311205 Msa1022290:CDS
TGCTGGAGGAGAAAGGTGTG+AGG 0.571094 7_1:-48311615 None:intergenic
AAGGATAAGCAAAGTGCAAG+TGG 0.571322 7_1:-48311280 None:intergenic
AGCCAACGGCATAACAAGCA+GGG 0.579269 7_1:-48311664 None:intergenic
AAGAAAATTTCGGCTCAGAA+GGG 0.589966 7_1:+48311510 Msa1022290:CDS
AAAGCAAGTGAAGTTCATGA+AGG 0.612429 7_1:+48311395 Msa1022290:CDS
TCATGTGGCAACATAAGAAG+AGG 0.619719 7_1:-48308892 None:intergenic
TCCAAGGCTACCTCTTCACA+AGG 0.631287 7_1:+48311356 Msa1022290:CDS
AATGTCTTCTAATTGGTCAG+AGG 0.638714 7_1:+48308831 Msa1022290:CDS
AGGTGCACCAACCCAAGGTG+TGG 0.643144 7_1:+48311191 Msa1022290:CDS
ACTATAGGTGCACCAACCCA+AGG 0.643448 7_1:+48311186 Msa1022290:CDS
GCCAACGGCATAACAAGCAG+GGG 0.647795 7_1:-48311663 None:intergenic
CCAGAAGTCCAGGATGCTGG+AGG 0.654201 7_1:-48311629 None:intergenic
GTGATGATGGATATAGGTGG+AGG 0.658043 7_1:+48309323 Msa1022290:CDS
TGGGTGATGATGGATATAGG+TGG 0.674806 7_1:+48309320 Msa1022290:CDS
ACTTCAGATACTCTCTCATG+TGG 0.678108 7_1:-48308907 None:intergenic
TCCACCAATGAAGAAGTCCA+AGG 0.685535 7_1:+48311340 Msa1022290:CDS
AAGTGATTATGAGAGTGTCA+GGG 0.690845 7_1:-48311247 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATTGAAATATGAATTT+AGG - chr7_1:48308743-48308762 None:intergenic 10.0%
!! AAGAAAATATATAAAAGTAA+AGG - chr7_1:48309436-48309455 None:intergenic 10.0%
!!! TTTTTTGAAAGAATTTATAT+GGG - chr7_1:48310295-48310314 None:intergenic 10.0%
!!! TTTTTTTGAAAGAATTTATA+TGG - chr7_1:48310296-48310315 None:intergenic 10.0%
!! TTCATTTCAAATATTTATTC+AGG + chr7_1:48308976-48308995 Msa1022290:CDS 15.0%
!!! GTATTTTGATATGAAAAAAT+CGG - chr7_1:48309811-48309830 None:intergenic 15.0%
!!! TTTTTTTGTGCTTATAATAT+GGG - chr7_1:48309843-48309862 None:intergenic 15.0%
!!! TTTTTTTTGTGCTTATAATA+TGG - chr7_1:48309844-48309863 None:intergenic 15.0%
!!! ATCTTTGAAATAAGTTTTAT+AGG + chr7_1:48309953-48309972 Msa1022290:intron 15.0%
!! GATAATGAAATACTATTTAA+AGG - chr7_1:48310597-48310616 None:intergenic 15.0%
!!! ATAAAAAAGTTGAATGTTTT+AGG - chr7_1:48310738-48310757 None:intergenic 15.0%
!! AGAAAATAATGTCTTCTAAT+TGG + chr7_1:48308824-48308843 Msa1022290:CDS 20.0%
!! TTGATGAAAATTGTTGAAAT+TGG - chr7_1:48309053-48309072 None:intergenic 20.0%
!!! ATTTTTTTTGTTAACTTGCA+TGG + chr7_1:48309093-48309112 Msa1022290:intron 20.0%
!! TTACATGTAATGTAATGTAA+TGG + chr7_1:48309406-48309425 Msa1022290:intron 20.0%
!! TACATGTAATGTAATGTAAT+GGG + chr7_1:48309407-48309426 Msa1022290:intron 20.0%
!! TACTATATATATGCATTAAC+AGG - chr7_1:48309509-48309528 None:intergenic 20.0%
!! AATGCATATATATAGTAGTT+TGG + chr7_1:48309512-48309531 Msa1022290:intron 20.0%
!! CAACAAATTCATATTCATTT+AGG - chr7_1:48309719-48309738 None:intergenic 20.0%
!!! GATGTAAAAACAATTTTCAT+TGG + chr7_1:48309978-48309997 Msa1022290:intron 20.0%
!!! AAACAATTTTCATTGGTAAT+TGG + chr7_1:48309985-48310004 Msa1022290:intron 20.0%
!!! CTTTGCATTTAATTTTTCTT+TGG + chr7_1:48310045-48310064 Msa1022290:intron 20.0%
!!! TGTCTTTTTTGCTTATAATT+TGG + chr7_1:48310113-48310132 Msa1022290:intron 20.0%
!!! GTCTTTTTTGCTTATAATTT+GGG + chr7_1:48310114-48310133 Msa1022290:intron 20.0%
!!! TGGGTATTTTTCTTATAATT+TGG + chr7_1:48310147-48310166 Msa1022290:intron 20.0%
!!! GGGTATTTTTCTTATAATTT+GGG + chr7_1:48310148-48310167 Msa1022290:intron 20.0%
!!! ATTTTTCTTATAATTTGGGA+CGG + chr7_1:48310152-48310171 Msa1022290:intron 20.0%
!! TGGAAAAATTTACTATTTGT+GGG - chr7_1:48310464-48310483 None:intergenic 20.0%
!! TTGGAAAAATTTACTATTTG+TGG - chr7_1:48310465-48310484 None:intergenic 20.0%
!!! AACGAGTTTTATATATTCTA+AGG + chr7_1:48310543-48310562 Msa1022290:intron 20.0%
!! ATTTATAGTTGCATATCAAT+TGG + chr7_1:48310655-48310674 Msa1022290:intron 20.0%
!!! TATAAAATTTGAAACTTGCA+AGG - chr7_1:48310766-48310785 None:intergenic 20.0%
!!! ATTTTGCACTCTTATTTTTA+AGG - chr7_1:48310935-48310954 None:intergenic 20.0%
!!! TTTTTAAACCAATCATACTA+TGG - chr7_1:48311003-48311022 None:intergenic 20.0%
!! AATCTTCTCAAATTAGTTAA+GGG - chr7_1:48311101-48311120 None:intergenic 20.0%
!! TAATCTTCTCAAATTAGTTA+AGG - chr7_1:48311102-48311121 None:intergenic 20.0%
!!! ATTACAAATTTTTTATGCCA+TGG + chr7_1:48311149-48311168 Msa1022290:intron 20.0%
! AAATGAACCTATTAAAAGCT+TGG - chr7_1:48308963-48308982 None:intergenic 25.0%
! ATTGTTGAAATTGGTTACTA+TGG - chr7_1:48309044-48309063 None:intergenic 25.0%
!! TTCAACAATTTTCATCAACA+AGG + chr7_1:48309055-48309074 Msa1022290:CDS 25.0%
!! ACTTGCATGGTAATTTTATT+AGG + chr7_1:48309106-48309125 Msa1022290:intron 25.0%
! ATCAAATAAGTGTACAAAAC+TGG - chr7_1:48309191-48309210 None:intergenic 25.0%
!!! TCAGAGTTTCTATTTTAGAA+AGG + chr7_1:48309239-48309258 Msa1022290:intron 25.0%
!! ACTTTGAAAATCAAATGCTT+TGG + chr7_1:48309289-48309308 Msa1022290:CDS 25.0%
! ACATGTAATGTAATGTAATG+GGG + chr7_1:48309408-48309427 Msa1022290:intron 25.0%
! TATATATGCATTAACAGGAT+TGG - chr7_1:48309504-48309523 None:intergenic 25.0%
! TCTTAACTCACCTATAAAAT+TGG + chr7_1:48309622-48309641 Msa1022290:intron 25.0%
!! TTAGACACTACCAATTTTAT+AGG - chr7_1:48309635-48309654 None:intergenic 25.0%
!!! GAATTTGTTGTAGTAGTAAA+AGG + chr7_1:48309729-48309748 Msa1022290:intron 25.0%
! ATGGAAAAACAAACATTTAG+AGG + chr7_1:48309772-48309791 Msa1022290:intron 25.0%
!! ATAATTTGGGACAAAGAAAA+TGG + chr7_1:48310127-48310146 Msa1022290:intron 25.0%
!! TAATTTGGGACAAAGAAAAT+GGG + chr7_1:48310128-48310147 Msa1022290:intron 25.0%
! TTTATATTATGAGCACTTGT+AGG - chr7_1:48310272-48310291 None:intergenic 25.0%
! AAACCCATATAAATCTTATG+TGG + chr7_1:48310326-48310345 Msa1022290:intron 25.0%
! ACACCACATAAGATTTATAT+GGG - chr7_1:48310332-48310351 None:intergenic 25.0%
! AACACCACATAAGATTTATA+TGG - chr7_1:48310333-48310352 None:intergenic 25.0%
!!! TCAAACGACTAACATTTTTT+AGG + chr7_1:48310369-48310388 Msa1022290:intron 25.0%
! TATATAAAAATGTAAGCCGT+TGG + chr7_1:48310416-48310435 Msa1022290:intron 25.0%
!! ATAGTAAATTTTTCCAATGC+TGG + chr7_1:48310468-48310487 Msa1022290:intron 25.0%
! TTACTCATTAATCCTATAGT+CGG - chr7_1:48310626-48310645 None:intergenic 25.0%
! ATATGCAACTATAAATGTGT+GGG - chr7_1:48310651-48310670 None:intergenic 25.0%
!! GCAAGTTTCAAATTTTATAG+TGG + chr7_1:48310767-48310786 Msa1022290:intron 25.0%
! AATGAGTTATACGTACAAAA+GGG + chr7_1:48310960-48310979 Msa1022290:intron 25.0%
! TTTATCTACCATAGTATGAT+TGG + chr7_1:48310992-48311011 Msa1022290:intron 25.0%
! TTCCAAAGAATTACTAGATT+GGG - chr7_1:48311447-48311466 None:intergenic 25.0%
TGAAGAATCATGACTTAAGT+TGG - chr7_1:48308935-48308954 None:intergenic 30.0%
! CAAAAGACCAAGCTTTTAAT+AGG + chr7_1:48308953-48308972 Msa1022290:CDS 30.0%
!! TTTTCAATATCTGAGATGGT+AGG - chr7_1:48309003-48309022 None:intergenic 30.0%
! AGCATTTTCAATATCTGAGA+TGG - chr7_1:48309007-48309026 None:intergenic 30.0%
TTAGGTTTAGTTGCATGAAT+TGG + chr7_1:48309124-48309143 Msa1022290:intron 30.0%
! TGTCATATGCTTGTTAGATT+TGG + chr7_1:48309154-48309173 Msa1022290:intron 30.0%
AAAATCAAATGCTTTGGCAA+TGG + chr7_1:48309295-48309314 Msa1022290:CDS 30.0%
AGAAATTCAAGAGTTTACCT+AGG - chr7_1:48309385-48309404 None:intergenic 30.0%
CATGTAATGTAATGTAATGG+GGG + chr7_1:48309409-48309428 Msa1022290:intron 30.0%
! ATGTAATGTAATGTAATGGG+GGG + chr7_1:48309410-48309429 Msa1022290:intron 30.0%
!! CATCAATAACGAGTCATTTT+TGG - chr7_1:48309755-48309774 None:intergenic 30.0%
CAAAAATGACTCGTTATTGA+TGG + chr7_1:48309753-48309772 Msa1022290:intron 30.0%
TTTGTGCTTATAATATGGGA+CGG - chr7_1:48309839-48309858 None:intergenic 30.0%
ATTATCTTCAAACCGACTAT+AGG + chr7_1:48310611-48310630 Msa1022290:intron 30.0%
TATGCAACTATAAATGTGTG+GGG - chr7_1:48310650-48310669 None:intergenic 30.0%
GATATGCAACTATAAATGTG+TGG - chr7_1:48310652-48310671 None:intergenic 30.0%
TCTCAAAACTGTTGCATAAA+AGG + chr7_1:48310813-48310832 Msa1022290:intron 30.0%
CTCAAAACTGTTGCATAAAA+GGG + chr7_1:48310814-48310833 Msa1022290:intron 30.0%
! CACATTAGAATTGTCGATTA+TGG - chr7_1:48310872-48310891 None:intergenic 30.0%
ACAATTCTAATGTGTACCTA+AGG + chr7_1:48310878-48310897 Msa1022290:intron 30.0%
CAATGAGTTATACGTACAAA+AGG + chr7_1:48310959-48310978 Msa1022290:intron 30.0%
ACTCTCATAATCACTTATGA+AGG + chr7_1:48311254-48311273 Msa1022290:CDS 30.0%
! TGCTTATCCTTATTTCATTG+TGG + chr7_1:48311292-48311311 Msa1022290:CDS 30.0%
! GCTTATCCTTATTTCATTGT+GGG + chr7_1:48311293-48311312 Msa1022290:CDS 30.0%
GTTCCAAAGAATTACTAGAT+TGG - chr7_1:48311448-48311467 None:intergenic 30.0%
TGTGTACGGTCTAATAAAAT+GGG - chr7_1:48311479-48311498 None:intergenic 30.0%
TTGTGTACGGTCTAATAAAA+TGG - chr7_1:48311480-48311499 None:intergenic 30.0%
AATGGTAGAATTTAAGCCAA+CGG - chr7_1:48311681-48311700 None:intergenic 30.0%
ATCCATGTCAAAGACAATGA+TGG + chr7_1:48308801-48308820 Msa1022290:CDS 35.0%
AATGTCTTCTAATTGGTCAG+AGG + chr7_1:48308831-48308850 Msa1022290:CDS 35.0%
CTAACAAGCATATGACAAGT+TGG - chr7_1:48309151-48309170 None:intergenic 35.0%
! AAATGCTTTGGCAATGGATT+GGG + chr7_1:48309301-48309320 Msa1022290:CDS 35.0%
CAAGAGTTTACCTAGGATTT+GGG - chr7_1:48309378-48309397 None:intergenic 35.0%
TCAAGAGTTTACCTAGGATT+TGG - chr7_1:48309379-48309398 None:intergenic 35.0%
!! GCATTAACAGGATTGGTTTA+AGG - chr7_1:48309497-48309516 None:intergenic 35.0%
! TTTCTTATAATTTGGGACGG+AGG + chr7_1:48310155-48310174 Msa1022290:intron 35.0%
! TTCTTATAATTTGGGACGGA+GGG + chr7_1:48310156-48310175 Msa1022290:intron 35.0%
! ATGAGCACTTGTAGGTATTT+TGG - chr7_1:48310264-48310283 None:intergenic 35.0%
! AAGATTTGAAATGCCAGCAT+TGG - chr7_1:48310484-48310503 None:intergenic 35.0%
! CAATACACGTGCAAGTATTT+TGG - chr7_1:48310508-48310527 None:intergenic 35.0%
!!! AGTCGCTTTTAGGTAAATGA+AGG - chr7_1:48310686-48310705 None:intergenic 35.0%
!!! ATGCAACAGTTTTGAGAAAC+TGG - chr7_1:48310810-48310829 None:intergenic 35.0%
CAAAACCTACTACTAGCATT+GGG - chr7_1:48310905-48310924 None:intergenic 35.0%
ACAAAACCTACTACTAGCAT+TGG - chr7_1:48310906-48310925 None:intergenic 35.0%
! TTTTATGCCATGGAACAAAC+AGG + chr7_1:48311159-48311178 Msa1022290:intron 35.0%
GAACAAACAGGAGTTACTAT+AGG + chr7_1:48311171-48311190 Msa1022290:intron 35.0%
!! AAGTGATTATGAGAGTGTCA+GGG - chr7_1:48311250-48311269 None:intergenic 35.0%
!! TAAGTGATTATGAGAGTGTC+AGG - chr7_1:48311251-48311270 None:intergenic 35.0%
GATTGTCCCACAATGAAATA+AGG - chr7_1:48311302-48311321 None:intergenic 35.0%
TTCACTTGCTTTATGGTCTT+GGG - chr7_1:48311387-48311406 None:intergenic 35.0%
CATGAACTTCACTTGCTTTA+TGG - chr7_1:48311394-48311413 None:intergenic 35.0%
AAAGCAAGTGAAGTTCATGA+AGG + chr7_1:48311395-48311414 Msa1022290:CDS 35.0%
AATTACTAGATTGGGCTTCA+TGG - chr7_1:48311439-48311458 None:intergenic 35.0%
AGCCCAATCTAGTAATTCTT+TGG + chr7_1:48311442-48311461 Msa1022290:CDS 35.0%
ATTAGACCGTACACAAGATA+CGG + chr7_1:48311484-48311503 Msa1022290:CDS 35.0%
GATACGGTCCAAGAAAATTT+CGG + chr7_1:48311500-48311519 Msa1022290:CDS 35.0%
AAGAAAATTTCGGCTCAGAA+GGG + chr7_1:48311510-48311529 Msa1022290:CDS 35.0%
AACCCTACAAACAATGTTGA+TGG + chr7_1:48311566-48311585 Msa1022290:CDS 35.0%
CACCATCAACATTGTTTGTA+GGG - chr7_1:48311571-48311590 None:intergenic 35.0%
TCACCATCAACATTGTTTGT+AGG - chr7_1:48311572-48311591 None:intergenic 35.0%
CTCCATCATTGTCTTTGACA+TGG - chr7_1:48308806-48308825 None:intergenic 40.0%
TCATGTGGCAACATAAGAAG+AGG - chr7_1:48308895-48308914 None:intergenic 40.0%
ACTTCAGATACTCTCTCATG+TGG - chr7_1:48308910-48308929 None:intergenic 40.0%
CAAATGCTTTGGCAATGGAT+TGG + chr7_1:48309300-48309319 Msa1022290:CDS 40.0%
!! GATTGGGTGATGATGGATAT+AGG + chr7_1:48309317-48309336 Msa1022290:CDS 40.0%
AGGATTTGGGCTATTCTTGA+TGG - chr7_1:48309365-48309384 None:intergenic 40.0%
TCAAGAATAGCCCAAATCCT+AGG + chr7_1:48309365-48309384 Msa1022290:CDS 40.0%
TGCTTATAATATGGGACGGA+GGG - chr7_1:48309835-48309854 None:intergenic 40.0%
!! GCACTTGTAGGTATTTTGGA+GGG - chr7_1:48310260-48310279 None:intergenic 40.0%
!! AGCACTTGTAGGTATTTTGG+AGG - chr7_1:48310261-48310280 None:intergenic 40.0%
GTAAGCCGTTGGATTGAAAT+CGG + chr7_1:48310427-48310446 Msa1022290:intron 40.0%
!! AGGATGAGTTGAGTTGATCA+TGG - chr7_1:48310577-48310596 None:intergenic 40.0%
!!! ACTGTGCTATAGTCGCTTTT+AGG - chr7_1:48310696-48310715 None:intergenic 40.0%
! ATTGATTCACTAGGCAAGGT+GGG - chr7_1:48310840-48310859 None:intergenic 40.0%
! AATTGATTCACTAGGCAAGG+TGG - chr7_1:48310841-48310860 None:intergenic 40.0%
ACCTTGCCTAGTGAATCAAT+TGG + chr7_1:48310840-48310859 Msa1022290:intron 40.0%
CCTTGCCTAGTGAATCAATT+GGG + chr7_1:48310841-48310860 Msa1022290:intron 40.0%
CCTAGTGAATCAATTGGGTT+GGG + chr7_1:48310846-48310865 Msa1022290:intron 40.0%
AGTAACTCCTGTTTGTTCCA+TGG - chr7_1:48311169-48311188 None:intergenic 40.0%
AAGGATAAGCAAAGTGCAAG+TGG - chr7_1:48311283-48311302 None:intergenic 40.0%
CTTCACTTGCTTTATGGTCT+TGG - chr7_1:48311388-48311407 None:intergenic 40.0%
! CTTCTGAGCCGAAATTTTCT+TGG - chr7_1:48311511-48311530 None:intergenic 40.0%
CAAGAAAATTTCGGCTCAGA+AGG + chr7_1:48311509-48311528 Msa1022290:CDS 40.0%
AGAAGGGTTGCTTGAAGATA+TGG + chr7_1:48311526-48311545 Msa1022290:CDS 40.0%
TGAAGATATGGTCCCGTTTA+TGG + chr7_1:48311538-48311557 Msa1022290:CDS 40.0%
ATATGGTCCCGTTTATGGTT+AGG + chr7_1:48311543-48311562 Msa1022290:CDS 40.0%
TAGGGTTCCTAACCATAAAC+GGG - chr7_1:48311553-48311572 None:intergenic 40.0%
GTAGGGTTCCTAACCATAAA+CGG - chr7_1:48311554-48311573 None:intergenic 40.0%
!! TGGGTGATGATGGATATAGG+TGG + chr7_1:48309320-48309339 Msa1022290:CDS 45.0%
!! GTGATGATGGATATAGGTGG+AGG + chr7_1:48309323-48309342 Msa1022290:CDS 45.0%
GGATATAGGTGGAGGAAGTA+TGG + chr7_1:48309331-48309350 Msa1022290:CDS 45.0%
GTGCTTATAATATGGGACGG+AGG - chr7_1:48309836-48309855 None:intergenic 45.0%
! GTCGACCGATTTCAATCCAA+CGG - chr7_1:48310435-48310454 None:intergenic 45.0%
! CCCAATTGATTCACTAGGCA+AGG - chr7_1:48310844-48310863 None:intergenic 45.0%
GCCTAGTGAATCAATTGGGT+TGG + chr7_1:48310845-48310864 Msa1022290:intron 45.0%
! CCCAACCCAATTGATTCACT+AGG - chr7_1:48310849-48310868 None:intergenic 45.0%
! ACTACTAGCATTGGGTCCTT+AGG - chr7_1:48310897-48310916 None:intergenic 45.0%
AAGGACCCAATGCTAGTAGT+AGG + chr7_1:48310897-48310916 Msa1022290:intron 45.0%
! GGACTTCTTCATTGGTGGAT+GGG - chr7_1:48311339-48311358 None:intergenic 45.0%
TGGACTTCTTCATTGGTGGA+TGG - chr7_1:48311340-48311359 None:intergenic 45.0%
TCCACCAATGAAGAAGTCCA+AGG + chr7_1:48311340-48311359 Msa1022290:CDS 45.0%
! GTAGCCTTGGACTTCTTCAT+TGG - chr7_1:48311347-48311366 None:intergenic 45.0%
! CTTGCTTTATGGTCTTGGGT+TGG - chr7_1:48311383-48311402 None:intergenic 45.0%
CTTGGACCGTATCTTGTGTA+CGG - chr7_1:48311493-48311512 None:intergenic 45.0%
!!! ATTTTTATATAAAAAAAATG+AGG - chr7_1:48310407-48310426 None:intergenic 5.0%
!! GGCAATGGATTGGGTGATGA+TGG + chr7_1:48309310-48309329 Msa1022290:CDS 50.0%
ACTATAGGTGCACCAACCCA+AGG + chr7_1:48311186-48311205 Msa1022290:CDS 50.0%
GCTTCTTAGCACCACACCTT+GGG - chr7_1:48311205-48311224 None:intergenic 50.0%
TGCTTCTTAGCACCACACCT+TGG - chr7_1:48311206-48311225 None:intergenic 50.0%
! AAGGTGTGGTGCTAAGAAGC+AGG + chr7_1:48311205-48311224 Msa1022290:CDS 50.0%
!! GAGAGTGTCAGGGTCTTCAT+TGG - chr7_1:48311240-48311259 None:intergenic 50.0%
GCCTTGGACTTCTTCATTGG+TGG - chr7_1:48311344-48311363 None:intergenic 50.0%
TCCAAGGCTACCTCTTCACA+AGG + chr7_1:48311356-48311375 Msa1022290:CDS 50.0%
TCCTTGTGAAGAGGTAGCCT+TGG - chr7_1:48311360-48311379 None:intergenic 50.0%
!! TTGGGTTGGTCCTTGTGAAG+AGG - chr7_1:48311369-48311388 None:intergenic 50.0%
! AGGAGAAAGGTGTGAGGAGA+AGG - chr7_1:48311612-48311631 None:intergenic 50.0%
AGTGGAACAACCAGAAGTCC+AGG - chr7_1:48311642-48311661 None:intergenic 50.0%
AGCCAACGGCATAACAAGCA+GGG - chr7_1:48311667-48311686 None:intergenic 50.0%
AAGCCAACGGCATAACAAGC+AGG - chr7_1:48311668-48311687 None:intergenic 50.0%
CTTAGCACCACACCTTGGGT+TGG - chr7_1:48311201-48311220 None:intergenic 55.0%
! TGCTGGAGGAGAAAGGTGTG+AGG - chr7_1:48311618-48311637 None:intergenic 55.0%
ACCTTTCTCCTCCAGCATCC+TGG + chr7_1:48311621-48311640 Msa1022290:CDS 55.0%
TCCAGGATGCTGGAGGAGAA+AGG - chr7_1:48311625-48311644 None:intergenic 55.0%
CAACCAGAAGTCCAGGATGC+TGG - chr7_1:48311635-48311654 None:intergenic 55.0%
GGCATAACAAGCAGGGGAAG+TGG - chr7_1:48311660-48311679 None:intergenic 55.0%
!! TCCCCTGCTTGTTATGCCGT+TGG + chr7_1:48311662-48311681 Msa1022290:CDS 55.0%
GCCAACGGCATAACAAGCAG+GGG - chr7_1:48311666-48311685 None:intergenic 55.0%
AGGTGCACCAACCCAAGGTG+TGG + chr7_1:48311191-48311210 Msa1022290:CDS 60.0%
CCAGAAGTCCAGGATGCTGG+AGG - chr7_1:48311632-48311651 None:intergenic 60.0%
CCTCCAGCATCCTGGACTTC+TGG + chr7_1:48311629-48311648 Msa1022290:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 48308730 48311703 48308730 ID=Msa1022290;Name=Msa1022290
chr7_1 mRNA 48308730 48311703 48308730 ID=Msa1022290-mRNA-1;Parent=Msa1022290;Name=Msa1022290-mRNA-1;_AED=0.00;_eAED=0.00;_QI=60|1|0.66|1|1|1|3|0|317
chr7_1 exon 48308730 48309076 48308730 ID=Msa1022290-mRNA-1:exon:9459;Parent=Msa1022290-mRNA-1
chr7_1 exon 48309243 48309386 48309243 ID=Msa1022290-mRNA-1:exon:9460;Parent=Msa1022290-mRNA-1
chr7_1 exon 48311181 48311703 48311181 ID=Msa1022290-mRNA-1:exon:9461;Parent=Msa1022290-mRNA-1
chr7_1 five_prime_UTR 48308730 48308789 48308730 ID=Msa1022290-mRNA-1:five_prime_utr;Parent=Msa1022290-mRNA-1
chr7_1 CDS 48308790 48309076 48308790 ID=Msa1022290-mRNA-1:cds;Parent=Msa1022290-mRNA-1
chr7_1 CDS 48309243 48309386 48309243 ID=Msa1022290-mRNA-1:cds;Parent=Msa1022290-mRNA-1
chr7_1 CDS 48311181 48311703 48311181 ID=Msa1022290-mRNA-1:cds;Parent=Msa1022290-mRNA-1
Gene Sequence

>Msa1022290

ATGATTGACTCATCCATGTCAAAGACAATGATGGAGAAAATAATGTCTTCTAATTGGTCAGAGGATGATGAACTTTTAAGAGAGCTTTTAGTTGATGAGTCTCCTCTTCTTATGTTGCCACATGAGAGAGTATCTGAAGTAACCAACTTAAGTCATGATTCTTCAAAAGACCAAGCTTTTAATAGGTTCATTTCAAATATTTATTCAGGTCCTACCATCTCAGATATTGAAAATGCTTTGTTAGTTACTAACCATAGTAACCAATTTCAACAATTTTCATCAACAAGAGTTTCTATTTTAGAAAGGAGTTTGAGTAAGATCGAGAATAAGTATACTTTGAAAATCAAATGCTTTGGCAATGGATTGGGTGATGATGGATATAGGTGGAGGAAGTATGGTCAGAAATCCATCAAGAATAGCCCAAATCCTAGGAGTTACTATAGGTGCACCAACCCAAGGTGTGGTGCTAAGAAGCAGGTTGAGAGATCCAATGAAGACCCTGACACTCTCATAATCACTTATGAAGGACTCCACTTGCACTTTGCTTATCCTTATTTCATTGTGGGACAATCACATCAATCTCATTCCCATCCACCAATGAAGAAGTCCAAGGCTACCTCTTCACAAGGACCAACCCAAGACCATAAAGCAAGTGAAGTTCATGAAGGTCAGAATATACAAGAAGTCCATGAAGCCCAATCTAGTAATTCTTTGGAACTCAATTCACCCATTTTATTAGACCGTACACAAGATACGGTCCAAGAAAATTTCGGCTCAGAAGGGTTGCTTGAAGATATGGTCCCGTTTATGGTTAGGAACCCTACAAACAATGTTGATGGTGATGATTACTCAAAATTTTCCTTCTCCTCACACCTTTCTCCTCCAGCATCCTGGACTTCTGGTTGTTCCACTTCCCCTGCTTGTTATGCCGTTGGCTTAAATTCTACCATTTAA
Protein sequence

>Msa1022290

MIDSSMSKTMMEKIMSSNWSEDDELLRELLVDESPLLMLPHERVSEVTNLSHDSSKDQAFNRFISNIYSGPTISDIENALLVTNHSNQFQQFSSTRVSILERSLSKIENKYTLKIKCFGNGLGDDGYRWRKYGQKSIKNSPNPRSYYRCTNPRCGAKKQVERSNEDPDTLIITYEGLHLHFAYPYFIVGQSHQSHSHPPMKKSKATSSQGPTQDHKASEVHEGQNIQEVHEAQSSNSLELNSPILLDRTQDTVQENFGSEGLLEDMVPFMVRNPTNNVDGDDYSKFSFSSHLSPPASWTSGCSTSPACYAVGLNSTI*