Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1022770 | AES79529.1 | 61.031 | 621 | 134 | 10 | 61 | 648 | 14 | 559 | 0.0 | 704 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1022770 | G7KSA8 | 61.031 | 621 | 134 | 10 | 61 | 648 | 14 | 559 | 0.0 | 704 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1022770 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1022770 | MtrunA17_Chr4g0075461 | 51.196 | 209 | 97 | 2 | 425 | 632 | 1 | 205 | 7.58e-70 | 226 |
| Msa1022770 | MtrunA17_Chr6g0484341 | 49.223 | 193 | 91 | 3 | 321 | 507 | 1 | 192 | 6.43e-53 | 180 |
| Msa1022770 | MtrunA17_Chr3g0104741 | 31.847 | 157 | 102 | 4 | 452 | 607 | 27 | 179 | 2.03e-18 | 85.1 |
| Msa1022770 | MtrunA17_Chr7g0239711 | 73.684 | 76 | 20 | 0 | 1 | 76 | 21 | 96 | 2.74e-14 | 72.4 |
| Msa1022770 | MtrunA17_Chr7g0215251 | 85.294 | 34 | 5 | 0 | 132 | 165 | 1 | 34 | 4.09e-13 | 63.9 |
| Msa1022770 | MtrunA17_Chr2g0314481 | 61.224 | 49 | 18 | 1 | 105 | 153 | 1 | 48 | 2.26e-12 | 62.0 |
| Msa1022770 | MtrunA17_Chr2g0310101 | 55.319 | 94 | 35 | 2 | 1 | 93 | 22 | 109 | 3.67e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 178 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTGGTTGCCACCTTTCT+TGG | 0.127941 | 7_1:-49724288 | None:intergenic |
| CGTGGTGAAGATTGGCTTTC+CGG | 0.145885 | 7_1:-49724381 | None:intergenic |
| GTGACGGTCATTGTGGGTTT+AGG | 0.217153 | 7_1:+49724568 | Msa1022770:CDS |
| ATGTATGGTATCATGAATTT+TGG | 0.223456 | 7_1:-49724522 | None:intergenic |
| TTTGCGGTTGTTAGCGTTTC+CGG | 0.229923 | 7_1:+49724242 | Msa1022770:CDS |
| GTCCACCTCCAAGGCTGATT+TGG | 0.254098 | 7_1:+49723774 | Msa1022770:CDS |
| CTTTGATTTCTAGTTTCATT+TGG | 0.266421 | 7_1:-49724215 | None:intergenic |
| ATGGTTGACATTGCCGGATA+TGG | 0.267479 | 7_1:+49724776 | Msa1022770:CDS |
| TCTTCATTTGTTGGCTCCTT+TGG | 0.273150 | 7_1:-49725113 | None:intergenic |
| AGCGGGAGCTTCAACCTTAA+TGG | 0.277606 | 7_1:-49723355 | None:intergenic |
| ATGATTGTATCTCTCCAAAT+TGG | 0.280987 | 7_1:-49723834 | None:intergenic |
| CTCATGGATCTTGAGGGATT+TGG | 0.283300 | 7_1:-49722477 | None:intergenic |
| CACCGAATTTGAAGATGTTC+TGG | 0.298709 | 7_1:+49725175 | Msa1022770:CDS |
| TGGTAGGAGCGTTACGGTCT+TGG | 0.304099 | 7_1:+49723861 | Msa1022770:CDS |
| AGATAATGTCAATTCCATTA+AGG | 0.306875 | 7_1:+49723341 | Msa1022770:intron |
| TCCACCTCCAAGGCTGATTT+GGG | 0.307022 | 7_1:+49723775 | Msa1022770:CDS |
| GAACTCTTTGGAGACGTTCT+TGG | 0.307506 | 7_1:-49724188 | None:intergenic |
| TGACGGTCATTGTGGGTTTA+GGG | 0.308538 | 7_1:+49724569 | Msa1022770:CDS |
| GAGATGTTGGCAAACCAATT+TGG | 0.315310 | 7_1:+49723820 | Msa1022770:CDS |
| CATTGGCATTTCTCCGGTTC+CGG | 0.316070 | 7_1:+49724440 | Msa1022770:CDS |
| TCAATAGTCTCCCACGTAGA+TGG | 0.318829 | 7_1:-49724348 | None:intergenic |
| GGGTCCGTCGACAAGCAAAT+AGG | 0.324624 | 7_1:+49723490 | Msa1022770:CDS |
| ATTGGATTGTCTTCATTTGT+TGG | 0.324708 | 7_1:-49725122 | None:intergenic |
| AGAGTGTCATCAAACATAAT+TGG | 0.324821 | 7_1:-49725140 | None:intergenic |
| GAGAGAGTTGTGGATGTTAT+TGG | 0.324920 | 7_1:+49724546 | Msa1022770:CDS |
| CTGGATTTACGATTATCATT+AGG | 0.347128 | 7_1:+49723514 | Msa1022770:CDS |
| TCATTTGGAACGGAACTCTT+TGG | 0.348650 | 7_1:-49724200 | None:intergenic |
| CGACAAATGGTTGACATTGC+CGG | 0.348943 | 7_1:+49724770 | Msa1022770:CDS |
| ACGTCATTGTCTCTGAGTTT+AGG | 0.351844 | 7_1:+49722428 | Msa1022770:CDS |
| TCCGTGCATGTTGGAGGTAG+TGG | 0.363555 | 7_1:-49724978 | None:intergenic |
| AAAGTGAAGAATGAAATAAT+TGG | 0.369443 | 7_1:+49723612 | Msa1022770:CDS |
| TCATTTGTTGGCTCCTTTGG+TGG | 0.378485 | 7_1:-49725110 | None:intergenic |
| GTTGGCTCCTTTGGTGGAAC+CGG | 0.381162 | 7_1:-49725104 | None:intergenic |
| TTCCAGAACATCTTCAAATT+CGG | 0.382690 | 7_1:-49725177 | None:intergenic |
| GTCACTTTGTACTCCGGGTT+GGG | 0.387116 | 7_1:+49723901 | Msa1022770:CDS |
| GAAAGAAGGATAAAATGATC+TGG | 0.387644 | 7_1:-49724939 | None:intergenic |
| ACGGAGACTTCGACCTTAGC+GGG | 0.392224 | 7_1:-49723372 | None:intergenic |
| GCTTGAAGCCTCAACTTTAA+CGG | 0.401956 | 7_1:-49723391 | None:intergenic |
| TTCTTGTTGCAAAACTTACA+TGG | 0.408494 | 7_1:-49722515 | None:intergenic |
| TTTATCTTTCCATGTGTCTT+GGG | 0.412580 | 7_1:-49723451 | None:intergenic |
| TCGGGAGGTGCAAAGCTACT+AGG | 0.422084 | 7_1:-49724750 | None:intergenic |
| TTGGTTGCCACCTTTCTTGG+AGG | 0.422846 | 7_1:-49724285 | None:intergenic |
| AGGCTGATTTGGGTACTTGT+TGG | 0.423241 | 7_1:+49723785 | Msa1022770:CDS |
| GACGCAAGAAAGTCATGTTA+TGG | 0.431894 | 7_1:+49724614 | Msa1022770:CDS |
| GACTATTGATTCTCAACATC+CGG | 0.436181 | 7_1:+49724362 | Msa1022770:CDS |
| TCCGGTTCCTAAGCCTAGCT+TGG | 0.437926 | 7_1:+49724458 | Msa1022770:CDS |
| ATCCTTCTTTCATTAAAAGA+TGG | 0.439243 | 7_1:+49724951 | Msa1022770:CDS |
| TGCTCGCATTGGCATTTCTC+CGG | 0.447534 | 7_1:+49724434 | Msa1022770:CDS |
| TCAGCTCCTCATGGATCTTG+AGG | 0.451104 | 7_1:-49722484 | None:intergenic |
| AGTTTAGGAGGAGGGAGAAG+TGG | 0.456414 | 7_1:+49722443 | Msa1022770:CDS |
| CAGCTCCTCATGGATCTTGA+GGG | 0.457928 | 7_1:-49722483 | None:intergenic |
| GCAACGATGTGTCCCATATC+CGG | 0.459943 | 7_1:-49724789 | None:intergenic |
| GCTCAATGTCCATGAGTGTT+TGG | 0.460695 | 7_1:-49725070 | None:intergenic |
| CGTTACAACTACATCTTGGA+TGG | 0.461274 | 7_1:+49724708 | Msa1022770:CDS |
| TCGTTGCATCATGTTACAAT+AGG | 0.461543 | 7_1:+49724805 | Msa1022770:CDS |
| GAGCGAAGAGGCGGCAACAT+GGG | 0.461785 | 7_1:+49725016 | Msa1022770:CDS |
| CTCCACTCCGTGCATGTTGG+AGG | 0.462100 | 7_1:-49724984 | None:intergenic |
| AAGAAATGCTATGTTGGAGT+TGG | 0.470876 | 7_1:+49723551 | Msa1022770:CDS |
| GGAGAGATACAATCATCGTT+TGG | 0.474074 | 7_1:+49723841 | Msa1022770:CDS |
| TCCACAACTCTCTCAATGTA+TGG | 0.475710 | 7_1:-49724537 | None:intergenic |
| TAGGGCTATAGCGGAAGCCT+TGG | 0.477157 | 7_1:+49724587 | Msa1022770:CDS |
| GGTCCGTCGACAAGCAAATA+GGG | 0.479832 | 7_1:+49723491 | Msa1022770:CDS |
| AGGGCTATAGCGGAAGCCTT+GGG | 0.480810 | 7_1:+49724588 | Msa1022770:CDS |
| CCCACTTAGAGGACGGCCTC+CGG | 0.482413 | 7_1:+49724878 | Msa1022770:CDS |
| GCTTTGCACCTCCCGACAAA+TGG | 0.483961 | 7_1:+49724757 | Msa1022770:CDS |
| TGGTTGACATTGCCGGATAT+GGG | 0.483992 | 7_1:+49724777 | Msa1022770:CDS |
| GGCAATGTCAACCATTTGTC+GGG | 0.484778 | 7_1:-49724768 | None:intergenic |
| CTAGGCTTAGGAACCGGAAC+CGG | 0.486219 | 7_1:-49724453 | None:intergenic |
| CAATAGTCTCCCACGTAGAT+GGG | 0.486737 | 7_1:-49724347 | None:intergenic |
| AACGGAGACTTCGACCTTAG+CGG | 0.491092 | 7_1:-49723373 | None:intergenic |
| TGGCATGTAATACATAGGAT+TGG | 0.492145 | 7_1:-49724502 | None:intergenic |
| AAAGAAGGATAAAATGATCT+GGG | 0.492271 | 7_1:-49724938 | None:intergenic |
| GTTGCCACCTTTCTTGGAGG+TGG | 0.495563 | 7_1:-49724282 | None:intergenic |
| GGTATTCCCTCAGCTCCTCA+TGG | 0.496808 | 7_1:-49722493 | None:intergenic |
| AAACTTGTGGTTGTGTTCAA+AGG | 0.500901 | 7_1:+49724004 | Msa1022770:CDS |
| GGTGACAACATTGTGGTCTC+CGG | 0.503595 | 7_1:-49724261 | None:intergenic |
| TCACAACATGCCCATTCGAT+TGG | 0.504612 | 7_1:+49724074 | Msa1022770:CDS |
| GGCACCTTGGTGTCCTCCCA+AGG | 0.506085 | 7_1:-49722555 | None:intergenic |
| ACCAAGCTAGGCTTAGGAAC+CGG | 0.507020 | 7_1:-49724459 | None:intergenic |
| GTTGAAACCAAGCTAGGCTT+AGG | 0.509147 | 7_1:-49724465 | None:intergenic |
| AAAAGCAACATGATTTGCCT+TGG | 0.512552 | 7_1:+49724909 | Msa1022770:CDS |
| ATCGTTTGGTAGGAGCGTTA+CGG | 0.515860 | 7_1:+49723855 | Msa1022770:CDS |
| TAGAAATCAAAGAGGCTTTG+CGG | 0.515973 | 7_1:+49724226 | Msa1022770:CDS |
| TTGTGGAGGAAGAGCGTGCT+AGG | 0.516335 | 7_1:+49723959 | Msa1022770:CDS |
| AATTATGTTTGATGACACTC+TGG | 0.516990 | 7_1:+49725142 | Msa1022770:CDS |
| CGGCAATGTCAACCATTTGT+CGG | 0.518109 | 7_1:-49724769 | None:intergenic |
| GGAGCGAAGAGGCGGCAACA+TGG | 0.518772 | 7_1:+49725015 | Msa1022770:CDS |
| GTTGTCACCACCTCCAAGAA+AGG | 0.523104 | 7_1:+49724275 | Msa1022770:CDS |
| GCATAAAATTGATGAGATGT+TGG | 0.523635 | 7_1:+49723807 | Msa1022770:CDS |
| CGTCGACAAGCAAATAGGGC+TGG | 0.526515 | 7_1:+49723495 | Msa1022770:CDS |
| TGTCACTTTGTACTCCGGGT+TGG | 0.526549 | 7_1:+49723900 | Msa1022770:CDS |
| TTATTGGTGACGGTCATTGT+GGG | 0.527317 | 7_1:+49724562 | Msa1022770:CDS |
| AAGATGTCACTTTGTACTCC+GGG | 0.528459 | 7_1:+49723896 | Msa1022770:CDS |
| GAACCGTTACAACTACATCT+TGG | 0.528477 | 7_1:+49724704 | Msa1022770:CDS |
| TTAGGAGGAGGGAGAAGTGG+AGG | 0.528661 | 7_1:+49722446 | Msa1022770:CDS |
| GTGTATCTCATCCAATCGAA+TGG | 0.532446 | 7_1:-49724085 | None:intergenic |
| ATTTCTAGTTTCATTTGGAA+CGG | 0.532499 | 7_1:-49724210 | None:intergenic |
| AAAGTGTGGGTGTTTGTTCA+AGG | 0.533208 | 7_1:+49723641 | Msa1022770:CDS |
| AAAGATGTCACTTTGTACTC+CGG | 0.534716 | 7_1:+49723895 | Msa1022770:CDS |
| TGTGTTCAAAGGACGTCGTA+TGG | 0.536187 | 7_1:+49724015 | Msa1022770:CDS |
| TAACTTGTTGAAACCAAGCT+AGG | 0.540469 | 7_1:-49724471 | None:intergenic |
| ACAAGTACCCAAATCAGCCT+TGG | 0.542381 | 7_1:-49723782 | None:intergenic |
| GCATTGGCATAAGTTGTACA+TGG | 0.542877 | 7_1:+49724110 | Msa1022770:CDS |
| GTTATTGGTGACGGTCATTG+TGG | 0.543159 | 7_1:+49724561 | Msa1022770:CDS |
| ACCCAAATCAGCCTTGGAGG+TGG | 0.545185 | 7_1:-49723776 | None:intergenic |
| CATGTAGTCATCTCTAACAA+CGG | 0.547566 | 7_1:-49724828 | None:intergenic |
| ATCGAATGGGCATGTTGTGA+CGG | 0.549323 | 7_1:-49724071 | None:intergenic |
| TGTATCTCATCCAATCGAAT+GGG | 0.549420 | 7_1:-49724084 | None:intergenic |
| TCTTGTTGCAAAACTTACAT+GGG | 0.552429 | 7_1:-49722514 | None:intergenic |
| ACTTTCTTGCGTCAAACCCA+AGG | 0.556498 | 7_1:-49724604 | None:intergenic |
| TATGTAGCAGGGTGTGGTGA+AGG | 0.558442 | 7_1:+49723744 | Msa1022770:intron |
| AAAAGGAAAGGTGCTCGCAT+TGG | 0.560208 | 7_1:+49724423 | Msa1022770:CDS |
| ACCGGAGGCCGTCCTCTAAG+TGG | 0.561153 | 7_1:-49724879 | None:intergenic |
| AGATACAATCATCGTTTGGT+AGG | 0.561269 | 7_1:+49723845 | Msa1022770:CDS |
| GGAATATTTGTCCACCTCCA+AGG | 0.563625 | 7_1:+49723765 | Msa1022770:CDS |
| CCAAGAAAGGTGGCAACCAA+AGG | 0.567384 | 7_1:+49724288 | Msa1022770:CDS |
| ATGTAATACATAGGATTGGA+TGG | 0.567797 | 7_1:-49724498 | None:intergenic |
| CGAAGTCTCCGTTAAAGTTG+AGG | 0.568301 | 7_1:+49723383 | Msa1022770:CDS |
| TGAAGGAAGAAATGCTATGT+TGG | 0.568759 | 7_1:+49723545 | Msa1022770:CDS |
| AAATCACAGGAGCGAAGAGG+CGG | 0.571279 | 7_1:+49725007 | Msa1022770:CDS |
| CATTGAGCTCAAAGAGAGAC+CGG | 0.571658 | 7_1:+49725085 | Msa1022770:CDS |
| CCGTGCATGTTGGAGGTAGT+GGG | 0.573700 | 7_1:-49724977 | None:intergenic |
| TTTCTCCACTCCGTGCATGT+TGG | 0.575231 | 7_1:-49724987 | None:intergenic |
| CAGCCCTATTTGCTTGTCGA+CGG | 0.576051 | 7_1:-49723494 | None:intergenic |
| TTCAAGAGTTGAAAGAGCAT+AGG | 0.576837 | 7_1:+49724652 | Msa1022770:CDS |
| CGAAGAGGCGGCAACATGGG+AGG | 0.577946 | 7_1:+49725019 | Msa1022770:CDS |
| AGAGAGACCGGTTCCACCAA+AGG | 0.578955 | 7_1:+49725097 | Msa1022770:CDS |
| TAAGGTTGAAGCTCCCGCTA+AGG | 0.581885 | 7_1:+49723359 | Msa1022770:CDS |
| AGTACCCAAATCAGCCTTGG+AGG | 0.584373 | 7_1:-49723779 | None:intergenic |
| CAAGATCCATGAGGAGCTGA+GGG | 0.584633 | 7_1:+49722487 | Msa1022770:CDS |
| CATCCAAGATGTAGTTGTAA+CGG | 0.586072 | 7_1:-49724707 | None:intergenic |
| TCATTGTCTCTGAGTTTAGG+AGG | 0.586488 | 7_1:+49722431 | Msa1022770:CDS |
| ATAATTGGATCAAGAAAGTG+TGG | 0.592305 | 7_1:+49723627 | Msa1022770:CDS |
| AAATCAAAACCACACGTGGT+AGG | 0.593473 | 7_1:+49724322 | Msa1022770:CDS |
| TGTACAACTTATGCCAATGC+GGG | 0.594008 | 7_1:-49724107 | None:intergenic |
| TGGATGAGATACACCCGCAT+TGG | 0.595400 | 7_1:+49724094 | Msa1022770:CDS |
| TCAAGATCCATGAGGAGCTG+AGG | 0.596229 | 7_1:+49722486 | Msa1022770:CDS |
| TGTCTCTGAGTTTAGGAGGA+GGG | 0.598792 | 7_1:+49722435 | Msa1022770:CDS |
| CCCACTACCTCCAACATGCA+CGG | 0.600283 | 7_1:+49724977 | Msa1022770:CDS |
| GGATCGTTTCCAAACACTCA+TGG | 0.600627 | 7_1:+49725061 | Msa1022770:CDS |
| TCAAGTTCTCAAGCCTTGGG+AGG | 0.602598 | 7_1:+49722542 | Msa1022770:CDS |
| TTGTCTCTGAGTTTAGGAGG+AGG | 0.607557 | 7_1:+49722434 | Msa1022770:CDS |
| CCGGAGGCCGTCCTCTAAGT+GGG | 0.607634 | 7_1:-49724878 | None:intergenic |
| CAATGAAGCATGCACAAGGT+AGG | 0.609681 | 7_1:-49724038 | None:intergenic |
| TCGGTCGCGGAGGAGTGGCA+TGG | 0.609865 | 7_1:+49724162 | Msa1022770:CDS |
| ACTTTGTACTCCGGGTTGGG+TGG | 0.610903 | 7_1:+49723904 | Msa1022770:CDS |
| GTTGTGGATGTTATTGGTGA+CGG | 0.613653 | 7_1:+49724552 | Msa1022770:CDS |
| TCTTCACAAACTAAAAGGAA+AGG | 0.614766 | 7_1:+49724411 | Msa1022770:CDS |
| TGCATTGAGAAGAAAACTTG+TGG | 0.616078 | 7_1:+49723991 | Msa1022770:CDS |
| TTGTGGGTTTAGGGCTATAG+CGG | 0.617206 | 7_1:+49724578 | Msa1022770:CDS |
| TGGAGGTGGTGACAACATTG+TGG | 0.620314 | 7_1:-49724268 | None:intergenic |
| CGTTGTTAGAGATGACTACA+TGG | 0.623778 | 7_1:+49724829 | Msa1022770:CDS |
| AATGAAACTAGAAATCAAAG+AGG | 0.633215 | 7_1:+49724218 | Msa1022770:CDS |
| ACCATACATTGAGAGAGTTG+TGG | 0.639154 | 7_1:+49724536 | Msa1022770:CDS |
| GCATAGGAGCAAATACATTG+AGG | 0.639326 | 7_1:+49724668 | Msa1022770:CDS |
| TACCTCCAACATGCACGGAG+TGG | 0.641980 | 7_1:+49724982 | Msa1022770:CDS |
| CAAGCCTTGGGAGGACACCA+AGG | 0.644910 | 7_1:+49722551 | Msa1022770:CDS |
| ATCATTAGGAGATCTTGTGA+AGG | 0.645829 | 7_1:+49723528 | Msa1022770:CDS |
| AGACACGTGACCACCCAACC+CGG | 0.653778 | 7_1:-49723914 | None:intergenic |
| ATGTACAACTTATGCCAATG+CGG | 0.656484 | 7_1:-49724108 | None:intergenic |
| AATGTCAACCATTTGTCGGG+AGG | 0.657251 | 7_1:-49724765 | None:intergenic |
| GCACGGAGTGGAGAAATCAC+AGG | 0.658221 | 7_1:+49724994 | Msa1022770:CDS |
| GAGAAATCACAGGAGCGAAG+AGG | 0.660156 | 7_1:+49725004 | Msa1022770:CDS |
| GTCACCACCTCCAAGAAAGG+TGG | 0.660613 | 7_1:+49724278 | Msa1022770:CDS |
| CATTGGCATAAGTTGTACAT+GGG | 0.661213 | 7_1:+49724111 | Msa1022770:CDS |
| AAGAAAGTCATGTTATGGTG+CGG | 0.661237 | 7_1:+49724619 | Msa1022770:CDS |
| AATGATCTGGGATTAGACCA+AGG | 0.663059 | 7_1:-49724926 | None:intergenic |
| GAAATGAGCTGTGTCCACAT+CGG | 0.669036 | 7_1:-49723421 | None:intergenic |
| AGATGGGATCCTACCACGTG+TGG | 0.671619 | 7_1:-49724331 | None:intergenic |
| CGGAAAGCCAATCTTCACCA+CGG | 0.677265 | 7_1:+49724382 | Msa1022770:CDS |
| ATAGCAATGAAGCATGCACA+AGG | 0.682000 | 7_1:-49724042 | None:intergenic |
| AATAAAATCAAAACCACACG+TGG | 0.684854 | 7_1:+49724318 | Msa1022770:CDS |
| TAATTGGATCAAGAAAGTGT+GGG | 0.697585 | 7_1:+49723628 | Msa1022770:CDS |
| TGGTAGGATCCCATCTACGT+GGG | 0.712593 | 7_1:+49724338 | Msa1022770:CDS |
| TTCAAGCGTCAATTCCGATG+TGG | 0.715226 | 7_1:+49723407 | Msa1022770:CDS |
| GTGGTAGGATCCCATCTACG+TGG | 0.720654 | 7_1:+49724337 | Msa1022770:CDS |
| GAGTTGGTTTGTGAACGAAG+CGG | 0.722124 | 7_1:+49723567 | Msa1022770:CDS |
| CAAATCCCTCAAGATCCATG+AGG | 0.742811 | 7_1:+49722478 | Msa1022770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAAAAGAAAAAAAAAAT+GGG | - | chr7_1:49723173-49723192 | None:intergenic | 10.0% |
| !! | AAAACAAAAGAAAAAAAAAA+TGG | - | chr7_1:49723174-49723193 | None:intergenic | 10.0% |
| !! | ATTGAAAAATAAATTCAGTT+AGG | + | chr7_1:49722605-49722624 | Msa1022770:intron | 15.0% |
| !!! | TAATTTTTTTGGTGTTTTTT+GGG | - | chr7_1:49722888-49722907 | None:intergenic | 15.0% |
| !!! | ATAATTTTTTTGGTGTTTTT+TGG | - | chr7_1:49722889-49722908 | None:intergenic | 15.0% |
| !!! | TTGACACAAAATAATTTTTT+TGG | - | chr7_1:49722899-49722918 | None:intergenic | 15.0% |
| !! | AAAGTGAAGAATGAAATAAT+TGG | + | chr7_1:49723612-49723631 | Msa1022770:CDS | 20.0% |
| !!! | AAGTAATGAAGATTTGTTTT+CGG | + | chr7_1:49724143-49724162 | Msa1022770:CDS | 20.0% |
| !! | AAAAATCTTCACAAACTAAA+AGG | + | chr7_1:49724406-49724425 | Msa1022770:CDS | 20.0% |
| ! | GAAAAATGCATCAAATGTAA+TGG | - | chr7_1:49723010-49723029 | None:intergenic | 25.0% |
| !! | TTACATTTGATGCATTTTTC+TGG | + | chr7_1:49723010-49723029 | Msa1022770:intron | 25.0% |
| !!! | TCTGGTTTTTTTTTTTTGCA+TGG | + | chr7_1:49723028-49723047 | Msa1022770:intron | 25.0% |
| !!! | CTGGTTTTTTTTTTTTGCAT+GGG | + | chr7_1:49723029-49723048 | Msa1022770:intron | 25.0% |
| !! | AAAAACTTGCTTATTTGACA+AGG | - | chr7_1:49723307-49723326 | None:intergenic | 25.0% |
| ! | AGATAATGTCAATTCCATTA+AGG | + | chr7_1:49723341-49723360 | Msa1022770:intron | 25.0% |
| ! | AAAGATAAAAACGAATTGCT+CGG | + | chr7_1:49723465-49723484 | Msa1022770:CDS | 25.0% |
| !!! | AGCCATGAATTTTATTTTTG+TGG | + | chr7_1:49723942-49723961 | Msa1022770:CDS | 25.0% |
| ! | CTCCACAAAAATAAAATTCA+TGG | - | chr7_1:49723947-49723966 | None:intergenic | 25.0% |
| !!! | CATGAATTTTATTTTTGTGG+AGG | + | chr7_1:49723945-49723964 | Msa1022770:CDS | 25.0% |
| !!! | ATTTCTAGTTTCATTTGGAA+CGG | - | chr7_1:49724213-49724232 | None:intergenic | 25.0% |
| !!! | CTTTGATTTCTAGTTTCATT+TGG | - | chr7_1:49724218-49724237 | None:intergenic | 25.0% |
| ! | AATGAAACTAGAAATCAAAG+AGG | + | chr7_1:49724218-49724237 | Msa1022770:CDS | 25.0% |
| !!! | AATTTTGGCATGTAATACAT+AGG | - | chr7_1:49724510-49724529 | None:intergenic | 25.0% |
| !! | ATGTATGGTATCATGAATTT+TGG | - | chr7_1:49724525-49724544 | None:intergenic | 25.0% |
| ! | AAAGAAGGATAAAATGATCT+GGG | - | chr7_1:49724941-49724960 | None:intergenic | 25.0% |
| ! | ATCCTTCTTTCATTAAAAGA+TGG | + | chr7_1:49724951-49724970 | Msa1022770:CDS | 25.0% |
| !! | AACCATCTTTTAATGAAAGA+AGG | - | chr7_1:49724956-49724975 | None:intergenic | 25.0% |
| TCTTGTTGCAAAACTTACAT+GGG | - | chr7_1:49722517-49722536 | None:intergenic | 30.0% | |
| TTCTTGTTGCAAAACTTACA+TGG | - | chr7_1:49722518-49722537 | None:intergenic | 30.0% | |
| TAAATTCAGTTAGGAACGTT+TGG | + | chr7_1:49722614-49722633 | Msa1022770:intron | 30.0% | |
| !!! | TTTTGGTGTTTTTTGGGTTA+TGG | - | chr7_1:49722882-49722901 | None:intergenic | 30.0% |
| ! | TTCGATCAGCAATAATTTTG+AGG | - | chr7_1:49722929-49722948 | None:intergenic | 30.0% |
| AAAAATTTCTAAGTCTCCAG+CGG | - | chr7_1:49723107-49723126 | None:intergenic | 30.0% | |
| ! | AAATGGGAAAAACACTGTTT+TGG | - | chr7_1:49723157-49723176 | None:intergenic | 30.0% |
| TTTATCTTTCCATGTGTCTT+GGG | - | chr7_1:49723454-49723473 | None:intergenic | 30.0% | |
| ! | TTTTATCTTTCCATGTGTCT+TGG | - | chr7_1:49723455-49723474 | None:intergenic | 30.0% |
| CTGGATTTACGATTATCATT+AGG | + | chr7_1:49723514-49723533 | Msa1022770:CDS | 30.0% | |
| !! | TCATTCTTCACTTTTGTCTT+CGG | - | chr7_1:49723606-49723625 | None:intergenic | 30.0% |
| ATAATTGGATCAAGAAAGTG+TGG | + | chr7_1:49723627-49723646 | Msa1022770:CDS | 30.0% | |
| ! | TAATTGGATCAAGAAAGTGT+GGG | + | chr7_1:49723628-49723647 | Msa1022770:CDS | 30.0% |
| GCATAAAATTGATGAGATGT+TGG | + | chr7_1:49723807-49723826 | Msa1022770:CDS | 30.0% | |
| ATGATTGTATCTCTCCAAAT+TGG | - | chr7_1:49723837-49723856 | None:intergenic | 30.0% | |
| !!! | CGTGTGGTTTTGATTTTATT+GGG | - | chr7_1:49724318-49724337 | None:intergenic | 30.0% |
| !!! | ACGTGTGGTTTTGATTTTAT+TGG | - | chr7_1:49724319-49724338 | None:intergenic | 30.0% |
| AATAAAATCAAAACCACACG+TGG | + | chr7_1:49724318-49724337 | Msa1022770:CDS | 30.0% | |
| TCTTCACAAACTAAAAGGAA+AGG | + | chr7_1:49724411-49724430 | Msa1022770:CDS | 30.0% | |
| ATGTAATACATAGGATTGGA+TGG | - | chr7_1:49724501-49724520 | None:intergenic | 30.0% | |
| GAAAGAAGGATAAAATGATC+TGG | - | chr7_1:49724942-49724961 | None:intergenic | 30.0% | |
| ATTGGATTGTCTTCATTTGT+TGG | - | chr7_1:49725125-49725144 | None:intergenic | 30.0% | |
| ! | AGAGTGTCATCAAACATAAT+TGG | - | chr7_1:49725143-49725162 | None:intergenic | 30.0% |
| ! | AATTATGTTTGATGACACTC+TGG | + | chr7_1:49725142-49725161 | Msa1022770:CDS | 30.0% |
| TTCCAGAACATCTTCAAATT+CGG | - | chr7_1:49725180-49725199 | None:intergenic | 30.0% | |
| !!! | TTTTCAAGTTCTCAAGCCTT+GGG | + | chr7_1:49722539-49722558 | Msa1022770:CDS | 35.0% |
| TTGTCAAAAAAGCAACCTTC+TGG | - | chr7_1:49722662-49722681 | None:intergenic | 35.0% | |
| !!! | AGAAGGTTGCTTTTTTGACA+AGG | + | chr7_1:49722661-49722680 | Msa1022770:intron | 35.0% |
| GAATACTTCCAATTGACACA+TGG | + | chr7_1:49722683-49722702 | Msa1022770:intron | 35.0% | |
| AGTCATTTCCATGTGTCAAT+TGG | - | chr7_1:49722694-49722713 | None:intergenic | 35.0% | |
| GTGTAAGGTGATGAATGAAT+AGG | - | chr7_1:49722835-49722854 | None:intergenic | 35.0% | |
| TTATGGTATAGCTGTTAGTG+AGG | - | chr7_1:49722865-49722884 | None:intergenic | 35.0% | |
| CACAAAATGCATCAAAGAAC+AGG | + | chr7_1:49722967-49722986 | Msa1022770:intron | 35.0% | |
| ATAAAAACGAATTGCTCGGT+TGG | + | chr7_1:49723469-49723488 | Msa1022770:CDS | 35.0% | |
| TAAAAACGAATTGCTCGGTT+GGG | + | chr7_1:49723470-49723489 | Msa1022770:CDS | 35.0% | |
| ATCATTAGGAGATCTTGTGA+AGG | + | chr7_1:49723528-49723547 | Msa1022770:CDS | 35.0% | |
| TGAAGGAAGAAATGCTATGT+TGG | + | chr7_1:49723545-49723564 | Msa1022770:CDS | 35.0% | |
| AAGAAATGCTATGTTGGAGT+TGG | + | chr7_1:49723551-49723570 | Msa1022770:CDS | 35.0% | |
| TGGAAATTGGCCATTCTTAA+TGG | + | chr7_1:49723696-49723715 | Msa1022770:intron | 35.0% | |
| AGATACAATCATCGTTTGGT+AGG | + | chr7_1:49723845-49723864 | Msa1022770:CDS | 35.0% | |
| !! | AAAGATGTCACTTTGTACTC+CGG | + | chr7_1:49723895-49723914 | Msa1022770:CDS | 35.0% |
| TGCATTGAGAAGAAAACTTG+TGG | + | chr7_1:49723991-49724010 | Msa1022770:CDS | 35.0% | |
| AAACTTGTGGTTGTGTTCAA+AGG | + | chr7_1:49724004-49724023 | Msa1022770:CDS | 35.0% | |
| TGTATCTCATCCAATCGAAT+GGG | - | chr7_1:49724087-49724106 | None:intergenic | 35.0% | |
| ATGTACAACTTATGCCAATG+CGG | - | chr7_1:49724111-49724130 | None:intergenic | 35.0% | |
| CATTGGCATAAGTTGTACAT+GGG | + | chr7_1:49724111-49724130 | Msa1022770:CDS | 35.0% | |
| TAGAAATCAAAGAGGCTTTG+CGG | + | chr7_1:49724226-49724245 | Msa1022770:CDS | 35.0% | |
| !! | GACTATTGATTCTCAACATC+CGG | + | chr7_1:49724362-49724381 | Msa1022770:CDS | 35.0% |
| !!! | ATTTTTTCCGTGGTGAAGAT+TGG | - | chr7_1:49724392-49724411 | None:intergenic | 35.0% |
| !!! | GTTTGTGAAGATTTTTTCCG+TGG | - | chr7_1:49724402-49724421 | None:intergenic | 35.0% |
| !! | TAACTTGTTGAAACCAAGCT+AGG | - | chr7_1:49724474-49724493 | None:intergenic | 35.0% |
| TGGCATGTAATACATAGGAT+TGG | - | chr7_1:49724505-49724524 | None:intergenic | 35.0% | |
| AAGAAAGTCATGTTATGGTG+CGG | + | chr7_1:49724619-49724638 | Msa1022770:CDS | 35.0% | |
| ! | TTCAAGAGTTGAAAGAGCAT+AGG | + | chr7_1:49724652-49724671 | Msa1022770:CDS | 35.0% |
| CATCCAAGATGTAGTTGTAA+CGG | - | chr7_1:49724710-49724729 | None:intergenic | 35.0% | |
| ! | GCAAAGCTACTAGGATTTTT+GGG | - | chr7_1:49724744-49724763 | None:intergenic | 35.0% |
| ! | TGCAAAGCTACTAGGATTTT+TGG | - | chr7_1:49724745-49724764 | None:intergenic | 35.0% |
| TCGTTGCATCATGTTACAAT+AGG | + | chr7_1:49724805-49724824 | Msa1022770:CDS | 35.0% | |
| CATGTAGTCATCTCTAACAA+CGG | - | chr7_1:49724831-49724850 | None:intergenic | 35.0% | |
| TCTAAGTGGGAAAAAAGTCT+CGG | - | chr7_1:49724868-49724887 | None:intergenic | 35.0% | |
| !!! | AGGCAAATCATGTTGCTTTT+CGG | - | chr7_1:49724909-49724928 | None:intergenic | 35.0% |
| ! | AAAAGCAACATGATTTGCCT+TGG | + | chr7_1:49724909-49724928 | Msa1022770:CDS | 35.0% |
| ! | AACATGGGAGGATGAATTTT+TGG | + | chr7_1:49725031-49725050 | Msa1022770:CDS | 35.0% |
| !! | GGATGAATTTTTGGATCAAC+AGG | + | chr7_1:49725040-49725059 | Msa1022770:CDS | 35.0% |
| ACGTCATTGTCTCTGAGTTT+AGG | + | chr7_1:49722428-49722447 | Msa1022770:CDS | 40.0% | |
| TCATTGTCTCTGAGTTTAGG+AGG | + | chr7_1:49722431-49722450 | Msa1022770:CDS | 40.0% | |
| !!! | GTTTTCAAGTTCTCAAGCCT+TGG | + | chr7_1:49722538-49722557 | Msa1022770:CDS | 40.0% |
| AGTTAGGAACGTTTGGACTT+GGG | + | chr7_1:49722621-49722640 | Msa1022770:intron | 40.0% | |
| GATCATCATTTGTGTCCAGA+AGG | + | chr7_1:49722644-49722663 | Msa1022770:intron | 40.0% | |
| AATGACTATATTGCCCCTAG+CGG | + | chr7_1:49722707-49722726 | Msa1022770:intron | 40.0% | |
| AGGTGATGAATGAATAGGTG+AGG | - | chr7_1:49722830-49722849 | None:intergenic | 40.0% | |
| GCTTGAAGCCTCAACTTTAA+CGG | - | chr7_1:49723394-49723413 | None:intergenic | 40.0% | |
| ! | TCTTTTCAACCCAAGACACA+TGG | + | chr7_1:49723442-49723461 | Msa1022770:CDS | 40.0% |
| AAAGTGTGGGTGTTTGTTCA+AGG | + | chr7_1:49723641-49723660 | Msa1022770:CDS | 40.0% | |
| GGAAGACAATGCTTGGAAAT+TGG | + | chr7_1:49723683-49723702 | Msa1022770:intron | 40.0% | |
| GTTGTGAACGCCATTAAGAA+TGG | - | chr7_1:49723709-49723728 | None:intergenic | 40.0% | |
| GAGATGTTGGCAAACCAATT+TGG | + | chr7_1:49723820-49723839 | Msa1022770:CDS | 40.0% | |
| GGAGAGATACAATCATCGTT+TGG | + | chr7_1:49723841-49723860 | Msa1022770:CDS | 40.0% | |
| !! | AAGATGTCACTTTGTACTCC+GGG | + | chr7_1:49723896-49723915 | Msa1022770:CDS | 40.0% |
| ATAGCAATGAAGCATGCACA+AGG | - | chr7_1:49724045-49724064 | None:intergenic | 40.0% | |
| GTGTATCTCATCCAATCGAA+TGG | - | chr7_1:49724088-49724107 | None:intergenic | 40.0% | |
| TGTACAACTTATGCCAATGC+GGG | - | chr7_1:49724110-49724129 | None:intergenic | 40.0% | |
| ! | GCATTGGCATAAGTTGTACA+TGG | + | chr7_1:49724110-49724129 | Msa1022770:CDS | 40.0% |
| !! | TGAAGATTTGTTTTCGGTCG+CGG | + | chr7_1:49724149-49724168 | Msa1022770:CDS | 40.0% |
| ! | TCATTTGGAACGGAACTCTT+TGG | - | chr7_1:49724203-49724222 | None:intergenic | 40.0% |
| ! | GATTTTATTGGGAGCTCCTT+TGG | - | chr7_1:49724307-49724326 | None:intergenic | 40.0% |
| AAATCAAAACCACACGTGGT+AGG | + | chr7_1:49724322-49724341 | Msa1022770:CDS | 40.0% | |
| ACCATACATTGAGAGAGTTG+TGG | + | chr7_1:49724536-49724555 | Msa1022770:CDS | 40.0% | |
| TCCACAACTCTCTCAATGTA+TGG | - | chr7_1:49724540-49724559 | None:intergenic | 40.0% | |
| GAGAGAGTTGTGGATGTTAT+TGG | + | chr7_1:49724546-49724565 | Msa1022770:CDS | 40.0% | |
| GTTGTGGATGTTATTGGTGA+CGG | + | chr7_1:49724552-49724571 | Msa1022770:CDS | 40.0% | |
| !! | TTATTGGTGACGGTCATTGT+GGG | + | chr7_1:49724562-49724581 | Msa1022770:CDS | 40.0% |
| GACGCAAGAAAGTCATGTTA+TGG | + | chr7_1:49724614-49724633 | Msa1022770:CDS | 40.0% | |
| GCATAGGAGCAAATACATTG+AGG | + | chr7_1:49724668-49724687 | Msa1022770:CDS | 40.0% | |
| GAACCGTTACAACTACATCT+TGG | + | chr7_1:49724704-49724723 | Msa1022770:CDS | 40.0% | |
| CGTTACAACTACATCTTGGA+TGG | + | chr7_1:49724708-49724727 | Msa1022770:CDS | 40.0% | |
| !! | AAGCTACTAGGATTTTTGGG+AGG | - | chr7_1:49724741-49724760 | None:intergenic | 40.0% |
| CGTTGTTAGAGATGACTACA+TGG | + | chr7_1:49724829-49724848 | Msa1022770:CDS | 40.0% | |
| !!! | GAGACTTTTTTCCCACTTAG+AGG | + | chr7_1:49724867-49724886 | Msa1022770:CDS | 40.0% |
| !!! | CTTTTTTCCCACTTAGAGGA+CGG | + | chr7_1:49724871-49724890 | Msa1022770:CDS | 40.0% |
| !!! | ATGTTGCTTTTCGGGTTAAC+CGG | - | chr7_1:49724900-49724919 | None:intergenic | 40.0% |
| !!! | GGCAAATCATGTTGCTTTTC+GGG | - | chr7_1:49724908-49724927 | None:intergenic | 40.0% |
| ! | AATGATCTGGGATTAGACCA+AGG | - | chr7_1:49724929-49724948 | None:intergenic | 40.0% |
| !! | TCTTCATTTGTTGGCTCCTT+TGG | - | chr7_1:49725116-49725135 | None:intergenic | 40.0% |
| CACCGAATTTGAAGATGTTC+TGG | + | chr7_1:49725175-49725194 | Msa1022770:CDS | 40.0% | |
| TTGTCTCTGAGTTTAGGAGG+AGG | + | chr7_1:49722434-49722453 | Msa1022770:CDS | 45.0% | |
| TGTCTCTGAGTTTAGGAGGA+GGG | + | chr7_1:49722435-49722454 | Msa1022770:CDS | 45.0% | |
| CTCATGGATCTTGAGGGATT+TGG | - | chr7_1:49722480-49722499 | None:intergenic | 45.0% | |
| CAAATCCCTCAAGATCCATG+AGG | + | chr7_1:49722478-49722497 | Msa1022770:CDS | 45.0% | |
| AAGCACTCTTTCACGCCTAT+GGG | - | chr7_1:49722579-49722598 | None:intergenic | 45.0% | |
| CAGTTAGGAACGTTTGGACT+TGG | + | chr7_1:49722620-49722639 | Msa1022770:intron | 45.0% | |
| GTTAGGAACGTTTGGACTTG+GGG | + | chr7_1:49722622-49722641 | Msa1022770:intron | 45.0% | |
| !!! | TAGGTGAGGTTGCTGGTTTT+GGG | - | chr7_1:49722816-49722835 | None:intergenic | 45.0% |
| !!! | ATAGGTGAGGTTGCTGGTTT+TGG | - | chr7_1:49722817-49722836 | None:intergenic | 45.0% |
| GAATGAATAGGTGAGGTTGC+TGG | - | chr7_1:49722823-49722842 | None:intergenic | 45.0% | |
| TATAGCTGTTAGTGAGGTGG+TGG | - | chr7_1:49722859-49722878 | None:intergenic | 45.0% | |
| TGGTATAGCTGTTAGTGAGG+TGG | - | chr7_1:49722862-49722881 | None:intergenic | 45.0% | |
| !! | GTTTTGGCAGTAGCTATTGC+AGG | - | chr7_1:49723141-49723160 | None:intergenic | 45.0% |
| CGAAGTCTCCGTTAAAGTTG+AGG | + | chr7_1:49723383-49723402 | Msa1022770:CDS | 45.0% | |
| TTCAAGCGTCAATTCCGATG+TGG | + | chr7_1:49723407-49723426 | Msa1022770:CDS | 45.0% | |
| GAAATGAGCTGTGTCCACAT+CGG | - | chr7_1:49723424-49723443 | None:intergenic | 45.0% | |
| !! | GAGTTGGTTTGTGAACGAAG+CGG | + | chr7_1:49723567-49723586 | Msa1022770:CDS | 45.0% |
| TCGTTAGGGAAGACAATGCT+TGG | + | chr7_1:49723676-49723695 | Msa1022770:intron | 45.0% | |
| CTACATACGGAACCATCTCA+TGG | - | chr7_1:49723731-49723750 | None:intergenic | 45.0% | |
| AGATGGTTCCGTATGTAGCA+GGG | + | chr7_1:49723733-49723752 | Msa1022770:intron | 45.0% | |
| GGAATATTTGTCCACCTCCA+AGG | + | chr7_1:49723765-49723784 | Msa1022770:CDS | 45.0% | |
| ACAAGTACCCAAATCAGCCT+TGG | - | chr7_1:49723785-49723804 | None:intergenic | 45.0% | |
| !! | AGGCTGATTTGGGTACTTGT+TGG | + | chr7_1:49723785-49723804 | Msa1022770:CDS | 45.0% |
| !! | ATCGTTTGGTAGGAGCGTTA+CGG | + | chr7_1:49723855-49723874 | Msa1022770:CDS | 45.0% |
| TGTGTTCAAAGGACGTCGTA+TGG | + | chr7_1:49724015-49724034 | Msa1022770:CDS | 45.0% | |
| CAATGAAGCATGCACAAGGT+AGG | - | chr7_1:49724041-49724060 | None:intergenic | 45.0% | |
| ATCGAATGGGCATGTTGTGA+CGG | - | chr7_1:49724074-49724093 | None:intergenic | 45.0% | |
| TCACAACATGCCCATTCGAT+TGG | + | chr7_1:49724074-49724093 | Msa1022770:CDS | 45.0% | |
| ! | GAACTCTTTGGAGACGTTCT+TGG | - | chr7_1:49724191-49724210 | None:intergenic | 45.0% |
| TTTGCGGTTGTTAGCGTTTC+CGG | + | chr7_1:49724242-49724261 | Msa1022770:CDS | 45.0% | |
| CAATAGTCTCCCACGTAGAT+GGG | - | chr7_1:49724350-49724369 | None:intergenic | 45.0% | |
| TCAATAGTCTCCCACGTAGA+TGG | - | chr7_1:49724351-49724370 | None:intergenic | 45.0% | |
| !! | AAAAGGAAAGGTGCTCGCAT+TGG | + | chr7_1:49724423-49724442 | Msa1022770:CDS | 45.0% |
| GTTGAAACCAAGCTAGGCTT+AGG | - | chr7_1:49724468-49724487 | None:intergenic | 45.0% | |
| !! | GTTATTGGTGACGGTCATTG+TGG | + | chr7_1:49724561-49724580 | Msa1022770:CDS | 45.0% |
| TGACGGTCATTGTGGGTTTA+GGG | + | chr7_1:49724569-49724588 | Msa1022770:CDS | 45.0% | |
| ! | TTGTGGGTTTAGGGCTATAG+CGG | + | chr7_1:49724578-49724597 | Msa1022770:CDS | 45.0% |
| ACTTTCTTGCGTCAAACCCA+AGG | - | chr7_1:49724607-49724626 | None:intergenic | 45.0% | |
| AATGTCAACCATTTGTCGGG+AGG | - | chr7_1:49724768-49724787 | None:intergenic | 45.0% | |
| GGCAATGTCAACCATTTGTC+GGG | - | chr7_1:49724771-49724790 | None:intergenic | 45.0% | |
| CGGCAATGTCAACCATTTGT+CGG | - | chr7_1:49724772-49724791 | None:intergenic | 45.0% | |
| CGACAAATGGTTGACATTGC+CGG | + | chr7_1:49724770-49724789 | Msa1022770:CDS | 45.0% | |
| ATGGTTGACATTGCCGGATA+TGG | + | chr7_1:49724776-49724795 | Msa1022770:CDS | 45.0% | |
| TGGTTGACATTGCCGGATAT+GGG | + | chr7_1:49724777-49724796 | Msa1022770:CDS | 45.0% | |
| GGATCGTTTCCAAACACTCA+TGG | + | chr7_1:49725061-49725080 | Msa1022770:CDS | 45.0% | |
| GCTCAATGTCCATGAGTGTT+TGG | - | chr7_1:49725073-49725092 | None:intergenic | 45.0% | |
| CATTGAGCTCAAAGAGAGAC+CGG | + | chr7_1:49725085-49725104 | Msa1022770:CDS | 45.0% | |
| !! | TCATTTGTTGGCTCCTTTGG+TGG | - | chr7_1:49725113-49725132 | None:intergenic | 45.0% |
| AGTTTAGGAGGAGGGAGAAG+TGG | + | chr7_1:49722443-49722462 | Msa1022770:CDS | 50.0% | |
| CAGCTCCTCATGGATCTTGA+GGG | - | chr7_1:49722486-49722505 | None:intergenic | 50.0% | |
| TCAGCTCCTCATGGATCTTG+AGG | - | chr7_1:49722487-49722506 | None:intergenic | 50.0% | |
| TCAAGATCCATGAGGAGCTG+AGG | + | chr7_1:49722486-49722505 | Msa1022770:CDS | 50.0% | |
| CAAGATCCATGAGGAGCTGA+GGG | + | chr7_1:49722487-49722506 | Msa1022770:CDS | 50.0% | |
| TCAAGTTCTCAAGCCTTGGG+AGG | + | chr7_1:49722542-49722561 | Msa1022770:CDS | 50.0% | |
| CAAGCACTCTTTCACGCCTA+TGG | - | chr7_1:49722580-49722599 | None:intergenic | 50.0% | |
| AGCGGTAGTTAACAACCGCT+GGG | - | chr7_1:49722781-49722800 | None:intergenic | 50.0% | |
| TTTGGGGGAAAACACTGGAG+CGG | - | chr7_1:49722799-49722818 | None:intergenic | 50.0% | |
| !!! | CTGGTTTTGGGGGAAAACAC+TGG | - | chr7_1:49722804-49722823 | None:intergenic | 50.0% |
| !!! | AGGTGAGGTTGCTGGTTTTG+GGG | - | chr7_1:49722815-49722834 | None:intergenic | 50.0% |
| ! | TAGTGAGGTGGTGGTGTGTA+AGG | - | chr7_1:49722850-49722869 | None:intergenic | 50.0% |
| AGCGGGAGCTTCAACCTTAA+TGG | - | chr7_1:49723358-49723377 | None:intergenic | 50.0% | |
| TAAGGTTGAAGCTCCCGCTA+AGG | + | chr7_1:49723359-49723378 | Msa1022770:CDS | 50.0% | |
| AACGGAGACTTCGACCTTAG+CGG | - | chr7_1:49723376-49723395 | None:intergenic | 50.0% | |
| GGTCCGTCGACAAGCAAATA+GGG | + | chr7_1:49723491-49723510 | Msa1022770:CDS | 50.0% | |
| CAGCCCTATTTGCTTGTCGA+CGG | - | chr7_1:49723497-49723516 | None:intergenic | 50.0% | |
| AGGTGCGTGGATATGTCGTT+AGG | + | chr7_1:49723661-49723680 | Msa1022770:intron | 50.0% | |
| GGTGCGTGGATATGTCGTTA+GGG | + | chr7_1:49723662-49723681 | Msa1022770:intron | 50.0% | |
| TGGCGTTCACAACCATGAGA+TGG | + | chr7_1:49723716-49723735 | Msa1022770:intron | 50.0% | |
| GAGATGGTTCCGTATGTAGC+AGG | + | chr7_1:49723732-49723751 | Msa1022770:intron | 50.0% | |
| TCACCACACCCTGCTACATA+CGG | - | chr7_1:49723744-49723763 | None:intergenic | 50.0% | |
| TATGTAGCAGGGTGTGGTGA+AGG | + | chr7_1:49723744-49723763 | Msa1022770:intron | 50.0% | |
| ! | TCCACCTCCAAGGCTGATTT+GGG | + | chr7_1:49723775-49723794 | Msa1022770:CDS | 50.0% |
| AGTACCCAAATCAGCCTTGG+AGG | - | chr7_1:49723782-49723801 | None:intergenic | 50.0% | |
| !! | TGTCACTTTGTACTCCGGGT+TGG | + | chr7_1:49723900-49723919 | Msa1022770:CDS | 50.0% |
| ! | GTCACTTTGTACTCCGGGTT+GGG | + | chr7_1:49723901-49723920 | Msa1022770:CDS | 50.0% |
| TGGATGAGATACACCCGCAT+TGG | + | chr7_1:49724094-49724113 | Msa1022770:CDS | 50.0% | |
| !! | AGATTTGTTTTCGGTCGCGG+AGG | + | chr7_1:49724152-49724171 | Msa1022770:CDS | 50.0% |
| GGTGACAACATTGTGGTCTC+CGG | - | chr7_1:49724264-49724283 | None:intergenic | 50.0% | |
| TGGAGGTGGTGACAACATTG+TGG | - | chr7_1:49724271-49724290 | None:intergenic | 50.0% | |
| GTTGTCACCACCTCCAAGAA+AGG | + | chr7_1:49724275-49724294 | Msa1022770:CDS | 50.0% | |
| TTGGTTGCCACCTTTCTTGG+AGG | - | chr7_1:49724288-49724307 | None:intergenic | 50.0% | |
| CCTTTGGTTGCCACCTTTCT+TGG | - | chr7_1:49724291-49724310 | None:intergenic | 50.0% | |
| CCAAGAAAGGTGGCAACCAA+AGG | + | chr7_1:49724288-49724307 | Msa1022770:CDS | 50.0% | |
| TGGTAGGATCCCATCTACGT+GGG | + | chr7_1:49724338-49724357 | Msa1022770:CDS | 50.0% | |
| !! | CGTGGTGAAGATTGGCTTTC+CGG | - | chr7_1:49724384-49724403 | None:intergenic | 50.0% |
| CGGAAAGCCAATCTTCACCA+CGG | + | chr7_1:49724382-49724401 | Msa1022770:CDS | 50.0% | |
| ! | TGCTCGCATTGGCATTTCTC+CGG | + | chr7_1:49724434-49724453 | Msa1022770:CDS | 50.0% |
| CATTGGCATTTCTCCGGTTC+CGG | + | chr7_1:49724440-49724459 | Msa1022770:CDS | 50.0% | |
| ACCAAGCTAGGCTTAGGAAC+CGG | - | chr7_1:49724462-49724481 | None:intergenic | 50.0% | |
| GTGACGGTCATTGTGGGTTT+AGG | + | chr7_1:49724568-49724587 | Msa1022770:CDS | 50.0% | |
| GCAACGATGTGTCCCATATC+CGG | - | chr7_1:49724792-49724811 | None:intergenic | 50.0% | |
| !!! | TTGCTTTTCGGGTTAACCGG+AGG | - | chr7_1:49724897-49724916 | None:intergenic | 50.0% |
| TTTCTCCACTCCGTGCATGT+TGG | - | chr7_1:49724990-49725009 | None:intergenic | 50.0% | |
| GAGAAATCACAGGAGCGAAG+AGG | + | chr7_1:49725004-49725023 | Msa1022770:CDS | 50.0% | |
| AAATCACAGGAGCGAAGAGG+CGG | + | chr7_1:49725007-49725026 | Msa1022770:CDS | 50.0% | |
| TTAGGAGGAGGGAGAAGTGG+AGG | + | chr7_1:49722446-49722465 | Msa1022770:CDS | 55.0% | |
| GGTATTCCCTCAGCTCCTCA+TGG | - | chr7_1:49722496-49722515 | None:intergenic | 55.0% | |
| TTTCACGCCTATGGGCACCT+TGG | - | chr7_1:49722571-49722590 | None:intergenic | 55.0% | |
| CGGCAGTTAACTACCGCTAG+GGG | - | chr7_1:49722723-49722742 | None:intergenic | 55.0% | |
| GCGGCAGTTAACTACCGCTA+GGG | - | chr7_1:49722724-49722743 | None:intergenic | 55.0% | |
| AGCGGCAGTTAACTACCGCT+AGG | - | chr7_1:49723062-49723081 | None:intergenic | 55.0% | |
| TAGCGGTAGTTAACTGCCGC+TGG | + | chr7_1:49722724-49722743 | Msa1022770:intron | 55.0% | |
| AGCGGTAGTTAACTGCCGCT+GGG | + | chr7_1:49722725-49722744 | Msa1022770:intron | 55.0% | |
| GAGCGGTAGTTAACAACCGC+TGG | - | chr7_1:49722782-49722801 | None:intergenic | 55.0% | |
| !!! | GGTGAGGTTGCTGGTTTTGG+GGG | - | chr7_1:49722814-49722833 | None:intergenic | 55.0% |
| TGCATGGGAACGCGTTGTAG+CGG | + | chr7_1:49723044-49723063 | Msa1022770:intron | 55.0% | |
| TAGCGGCAGTTAACTACCGC+TGG | + | chr7_1:49723061-49723080 | Msa1022770:intron | 55.0% | |
| AGCGGCAGTTAACTACCGCT+GGG | + | chr7_1:49723062-49723081 | Msa1022770:intron | 55.0% | |
| TAACTACCGCTGGGAGTGAG+CGG | + | chr7_1:49723071-49723090 | Msa1022770:intron | 55.0% | |
| ACGGAGACTTCGACCTTAGC+GGG | - | chr7_1:49723375-49723394 | None:intergenic | 55.0% | |
| GGGTCCGTCGACAAGCAAAT+AGG | + | chr7_1:49723490-49723509 | Msa1022770:CDS | 55.0% | |
| CGTCGACAAGCAAATAGGGC+TGG | + | chr7_1:49723495-49723514 | Msa1022770:CDS | 55.0% | |
| GGGTGTTTGTTCAAGGTGCG+TGG | + | chr7_1:49723648-49723667 | Msa1022770:intron | 55.0% | |
| GTTCCGTATGTAGCAGGGTG+TGG | + | chr7_1:49723738-49723757 | Msa1022770:intron | 55.0% | |
| GTCCACCTCCAAGGCTGATT+TGG | + | chr7_1:49723774-49723793 | Msa1022770:CDS | 55.0% | |
| ACCCAAATCAGCCTTGGAGG+TGG | - | chr7_1:49723779-49723798 | None:intergenic | 55.0% | |
| !! | TGGTAGGAGCGTTACGGTCT+TGG | + | chr7_1:49723861-49723880 | Msa1022770:CDS | 55.0% |
| ! | ACTTTGTACTCCGGGTTGGG+TGG | + | chr7_1:49723904-49723923 | Msa1022770:CDS | 55.0% |
| ! | TTGTGGAGGAAGAGCGTGCT+AGG | + | chr7_1:49723959-49723978 | Msa1022770:CDS | 55.0% |
| GTCACCACCTCCAAGAAAGG+TGG | + | chr7_1:49724278-49724297 | Msa1022770:CDS | 55.0% | |
| GTTGCCACCTTTCTTGGAGG+TGG | - | chr7_1:49724285-49724304 | None:intergenic | 55.0% | |
| AGATGGGATCCTACCACGTG+TGG | - | chr7_1:49724334-49724353 | None:intergenic | 55.0% | |
| GTGGTAGGATCCCATCTACG+TGG | + | chr7_1:49724337-49724356 | Msa1022770:CDS | 55.0% | |
| CTAGGCTTAGGAACCGGAAC+CGG | - | chr7_1:49724456-49724475 | None:intergenic | 55.0% | |
| TCCGGTTCCTAAGCCTAGCT+TGG | + | chr7_1:49724458-49724477 | Msa1022770:CDS | 55.0% | |
| ! | TAGGGCTATAGCGGAAGCCT+TGG | + | chr7_1:49724587-49724606 | Msa1022770:CDS | 55.0% |
| ! | AGGGCTATAGCGGAAGCCTT+GGG | + | chr7_1:49724588-49724607 | Msa1022770:CDS | 55.0% |
| ! | TCGGGAGGTGCAAAGCTACT+AGG | - | chr7_1:49724753-49724772 | None:intergenic | 55.0% |
| GCTTTGCACCTCCCGACAAA+TGG | + | chr7_1:49724757-49724776 | Msa1022770:CDS | 55.0% | |
| CCGTGCATGTTGGAGGTAGT+GGG | - | chr7_1:49724980-49724999 | None:intergenic | 55.0% | |
| CCCACTACCTCCAACATGCA+CGG | + | chr7_1:49724977-49724996 | Msa1022770:CDS | 55.0% | |
| TCCGTGCATGTTGGAGGTAG+TGG | - | chr7_1:49724981-49725000 | None:intergenic | 55.0% | |
| TACCTCCAACATGCACGGAG+TGG | + | chr7_1:49724982-49725001 | Msa1022770:CDS | 55.0% | |
| GCACGGAGTGGAGAAATCAC+AGG | + | chr7_1:49724994-49725013 | Msa1022770:CDS | 55.0% | |
| ! | AGAGAGACCGGTTCCACCAA+AGG | + | chr7_1:49725097-49725116 | Msa1022770:CDS | 55.0% |
| ! | GTTGGCTCCTTTGGTGGAAC+CGG | - | chr7_1:49725107-49725126 | None:intergenic | 55.0% |
| CAAGCCTTGGGAGGACACCA+AGG | + | chr7_1:49722551-49722570 | Msa1022770:CDS | 60.0% | |
| ! | GAGGACACCAAGGTGCCCAT+AGG | + | chr7_1:49722561-49722580 | Msa1022770:intron | 60.0% |
| TGCCAGCGGCAGTTAACAGC+CGG | - | chr7_1:49722758-49722777 | None:intergenic | 60.0% | |
| TAACAACCGCTGGGTGCCAG+CGG | - | chr7_1:49722772-49722791 | None:intergenic | 60.0% | |
| TAACAGCCGCTCACTCCCAG+CGG | - | chr7_1:49723080-49723099 | None:intergenic | 60.0% | |
| AGACACGTGACCACCCAACC+CGG | - | chr7_1:49723917-49723936 | None:intergenic | 60.0% | |
| ! | TGTTTTCGGTCGCGGAGGAG+TGG | + | chr7_1:49724157-49724176 | Msa1022770:CDS | 60.0% |
| CTCCACTCCGTGCATGTTGG+AGG | - | chr7_1:49724987-49725006 | None:intergenic | 60.0% | |
| GAGCGAAGAGGCGGCAACAT+GGG | + | chr7_1:49725016-49725035 | Msa1022770:CDS | 60.0% | |
| !! | GGCACCTTGGTGTCCTCCCA+AGG | - | chr7_1:49722558-49722577 | None:intergenic | 65.0% |
| ACTGCCGCTGGGAAACACGC+CGG | + | chr7_1:49722736-49722755 | Msa1022770:intron | 65.0% | |
| ACAGCCGGCGTGTTTCCCAG+CGG | - | chr7_1:49722743-49722762 | None:intergenic | 65.0% | |
| TAACTGCCGCTGGCACCCAG+CGG | + | chr7_1:49722763-49722782 | Msa1022770:intron | 65.0% | |
| GAGCGGCTGTTAACAGCCGC+TGG | + | chr7_1:49723088-49723107 | Msa1022770:intron | 65.0% | |
| CCGGAGGCCGTCCTCTAAGT+GGG | - | chr7_1:49724881-49724900 | None:intergenic | 65.0% | |
| CCCACTTAGAGGACGGCCTC+CGG | + | chr7_1:49724878-49724897 | Msa1022770:CDS | 65.0% | |
| ACCGGAGGCCGTCCTCTAAG+TGG | - | chr7_1:49724882-49724901 | None:intergenic | 65.0% | |
| GGAGCGAAGAGGCGGCAACA+TGG | + | chr7_1:49725015-49725034 | Msa1022770:CDS | 65.0% | |
| CGAAGAGGCGGCAACATGGG+AGG | + | chr7_1:49725019-49725038 | Msa1022770:CDS | 65.0% | |
| ! | CGCCGGCTGTTAACTGCCGC+TGG | + | chr7_1:49722753-49722772 | Msa1022770:intron | 70.0% |
| TCGGTCGCGGAGGAGTGGCA+TGG | + | chr7_1:49724162-49724181 | Msa1022770:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 49722398 | 49725235 | 49722398 | ID=Msa1022770;Name=Msa1022770 |
| chr7_1 | mRNA | 49722398 | 49725235 | 49722398 | ID=Msa1022770-mRNA-1;Parent=Msa1022770;Name=Msa1022770-mRNA-1;_AED=0.82;_eAED=0.82;_QI=0|0|0|0.33|1|1|3|0|658 |
| chr7_1 | exon | 49722398 | 49722572 | 49722398 | ID=Msa1022770-mRNA-1:exon:9707;Parent=Msa1022770-mRNA-1 |
| chr7_1 | exon | 49723343 | 49723662 | 49723343 | ID=Msa1022770-mRNA-1:exon:9708;Parent=Msa1022770-mRNA-1 |
| chr7_1 | exon | 49723754 | 49725235 | 49723754 | ID=Msa1022770-mRNA-1:exon:9709;Parent=Msa1022770-mRNA-1 |
| chr7_1 | CDS | 49722398 | 49722572 | 49722398 | ID=Msa1022770-mRNA-1:cds;Parent=Msa1022770-mRNA-1 |
| chr7_1 | CDS | 49723343 | 49723662 | 49723343 | ID=Msa1022770-mRNA-1:cds;Parent=Msa1022770-mRNA-1 |
| chr7_1 | CDS | 49723754 | 49725235 | 49723754 | ID=Msa1022770-mRNA-1:cds;Parent=Msa1022770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
