Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1023780 | KEH17097.1 | 68.182 | 110 | 14 | 1 | 75 | 184 | 11 | 99 | 1.98e-41 | 147 |
| Msa1023780 | KEH17097.1 | 68.333 | 120 | 17 | 1 | 1 | 120 | 1 | 99 | 1.54e-47 | 162 |
| Msa1023780 | KEH17097.1 | 82.000 | 50 | 9 | 0 | 139 | 188 | 11 | 60 | 1.48e-19 | 91.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1023780 | G7ZUP9 | 68.182 | 110 | 14 | 1 | 75 | 184 | 11 | 99 | 9.43e-42 | 147 |
| Msa1023780 | G7ZUP9 | 68.333 | 120 | 17 | 1 | 1 | 120 | 1 | 99 | 7.34e-48 | 162 |
| Msa1023780 | G7ZUP9 | 82.000 | 50 | 9 | 0 | 139 | 188 | 11 | 60 | 7.08e-20 | 91.3 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1023780 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCTTTGAACGTCCATAAA+AGG | 0.292733 | 7_1:-51926067 | Msa1023780:CDS |
| GTGCTTTGAACGTCCATAAA+AGG | 0.292733 | 7_1:-51928198 | Msa1023780:CDS |
| GTGCTTTGAACGTCCATAAA+AGG | 0.292733 | 7_1:-51930332 | Msa1023780:CDS |
| ATATACTATAAACTGAAATA+TGG | 0.301575 | 7_1:+51925882 | None:intergenic |
| ATATACTATAAACTGAAATA+TGG | 0.301575 | 7_1:+51928013 | None:intergenic |
| TGTTCTCCAGTATATCTTCT+TGG | 0.311912 | 7_1:+51925907 | None:intergenic |
| TGTTCTCCAGTATATCTTCT+TGG | 0.311912 | 7_1:+51928038 | None:intergenic |
| TGTTCTCCAGTATATCTTCT+TGG | 0.311912 | 7_1:+51930172 | None:intergenic |
| ATATACTATAAATTGAAATA+TGG | 0.316065 | 7_1:+51930147 | None:intergenic |
| AATTCTCCAAGAAGATATAC+TGG | 0.369151 | 7_1:-51925913 | Msa1023780:CDS |
| AATTCTCCAAGAAGATATAC+TGG | 0.369151 | 7_1:-51928044 | Msa1023780:CDS |
| AATTCTCCAAGAAGATATAC+TGG | 0.369151 | 7_1:-51930178 | Msa1023780:CDS |
| TCCCAAGTCCTTCGAAAGTA+GGG | 0.449688 | 7_1:-51926090 | Msa1023780:intron |
| TCCCAAGTCCTTCGAAAGTA+GGG | 0.449688 | 7_1:-51928221 | Msa1023780:intron |
| TCCCAAGTCCTTCGAAAGTA+GGG | 0.449688 | 7_1:-51930355 | Msa1023780:CDS |
| GTGGTTGACATGTCTTCATA+TGG | 0.455172 | 7_1:+51925973 | None:intergenic |
| GTGGTTGACATGTCTTCATA+TGG | 0.455172 | 7_1:+51928104 | None:intergenic |
| GTGGTTGACATGTCTTCATA+TGG | 0.455172 | 7_1:+51930238 | None:intergenic |
| ACCCCTACTTTCGAAGGACT+TGG | 0.483526 | 7_1:+51930353 | None:intergenic |
| CCCCTACTTTCGAAGGACTT+GGG | 0.544991 | 7_1:+51930354 | None:intergenic |
| GTCCCAAGTCCTTCGAAAGT+AGG | 0.556450 | 7_1:-51926091 | Msa1023780:intron |
| GTCCCAAGTCCTTCGAAAGT+AGG | 0.556450 | 7_1:-51928222 | Msa1023780:intron |
| GTCCCAAGTCCTTCGAAAGT+AGG | 0.556450 | 7_1:-51930356 | Msa1023780:CDS |
| TTATGTACTTGCGGCTTCTG+TGG | 0.572456 | 7_1:+51925954 | None:intergenic |
| TTATGTACTTGCGGCTTCTG+TGG | 0.572456 | 7_1:+51928085 | None:intergenic |
| TTATGTACTTGCGGCTTCTG+TGG | 0.572456 | 7_1:+51930219 | None:intergenic |
| CAAAGCACCCCTACTTTCGA+AGG | 0.573103 | 7_1:+51926082 | None:intergenic |
| CAAAGCACCCCTACTTTCGA+AGG | 0.573103 | 7_1:+51928213 | None:intergenic |
| CAAAGCACCCCTACTTTCGA+AGG | 0.573103 | 7_1:+51930347 | None:intergenic |
| CCCAAGTCCTTCGAAAGTAG+GGG | 0.658544 | 7_1:-51926089 | Msa1023780:intron |
| CCCAAGTCCTTCGAAAGTAG+GGG | 0.658544 | 7_1:-51928220 | Msa1023780:intron |
| CCCAAGTCCTTCGAAAGTAG+GGG | 0.658544 | 7_1:-51930354 | Msa1023780:CDS |
| TGGGACAATCAAAGCAAGCG+TGG | 0.684170 | 7_1:+51930373 | None:intergenic |
| AAAACACGTTGCGATAGATG+TGG | 0.685090 | 7_1:-51926029 | Msa1023780:CDS |
| AAAACACGTTGCGATAGATG+TGG | 0.685090 | 7_1:-51928160 | Msa1023780:CDS |
| AAAACACGTTGCGATAGATG+TGG | 0.685090 | 7_1:-51930294 | Msa1023780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATTTAATAA+GGG | + | chr7_1:51927503-51927522 | None:intergenic | 0.0% |
| !! | ATATATATATATATTTAATA+AGG | + | chr7_1:51927502-51927521 | None:intergenic | 0.0% |
| !! | TATATATATATATTTAATAA+GGG | + | chr7_1:51927503-51927522 | None:intergenic | 0.0% |
| !! | ATATATATATATATTTAATA+AGG | + | chr7_1:51927502-51927521 | None:intergenic | 0.0% |
| !! | ATATACTATAAATTGAAATA+TGG | + | chr7_1:51926122-51926141 | None:intergenic | 10.0% |
| !!! | TTAATTTTAGTTAAATTTCT+TGG | - | chr7_1:51926271-51926290 | Msa1023780:intron | 10.0% |
| !! | ATAAAATTATAAACTCAAAA+TGG | - | chr7_1:51926605-51926624 | Msa1023780:intron | 10.0% |
| !!! | TTTCTATTTAGAATATTTTT+AGG | - | chr7_1:51926784-51926803 | Msa1023780:intron | 10.0% |
| !!! | TCTTTATTTATTTTAAATTG+AGG | - | chr7_1:51926813-51926832 | Msa1023780:intron | 10.0% |
| !!! | CTTTATTTATTTTAAATTGA+GGG | - | chr7_1:51926814-51926833 | Msa1023780:intron | 10.0% |
| !! | TTATGTATAAAAAAAAATGA+GGG | - | chr7_1:51926877-51926896 | Msa1023780:intron | 10.0% |
| !! | AATTCTATTAAATCATATTT+AGG | - | chr7_1:51927575-51927594 | Msa1023780:intron | 10.0% |
| !! | ATTCTATTAAATCATATTTA+GGG | - | chr7_1:51927576-51927595 | Msa1023780:intron | 10.0% |
| !!! | TTAATTTTAGTTAAATTTCT+TGG | - | chr7_1:51926271-51926290 | Msa1023780:intron | 10.0% |
| !! | ATAAAATTATAAACTCAAAA+TGG | - | chr7_1:51926605-51926624 | Msa1023780:intron | 10.0% |
| !!! | TTTCTATTTAGAATATTTTT+AGG | - | chr7_1:51926784-51926803 | Msa1023780:intron | 10.0% |
| !!! | TCTTTATTTATTTTAAATTG+AGG | - | chr7_1:51926813-51926832 | Msa1023780:intron | 10.0% |
| !!! | CTTTATTTATTTTAAATTGA+GGG | - | chr7_1:51926814-51926833 | Msa1023780:intron | 10.0% |
| !! | TTATGTATAAAAAAAAATGA+GGG | - | chr7_1:51926877-51926896 | Msa1023780:intron | 10.0% |
| !! | AATTCTATTAAATCATATTT+AGG | - | chr7_1:51927575-51927594 | Msa1023780:intron | 10.0% |
| !! | ATTCTATTAAATCATATTTA+GGG | - | chr7_1:51927576-51927595 | Msa1023780:intron | 10.0% |
| !!! | TATGAGTATTTTTTTCAAAA+GGG | + | chr7_1:51926718-51926737 | None:intergenic | 15.0% |
| !!! | TTATGAGTATTTTTTTCAAA+AGG | + | chr7_1:51926719-51926738 | None:intergenic | 15.0% |
| !! | GTTATGTATAAAAAAAAATG+AGG | - | chr7_1:51926876-51926895 | Msa1023780:intron | 15.0% |
| !! | ATATACTATAAACTGAAATA+TGG | + | chr7_1:51928256-51928275 | None:intergenic | 15.0% |
| !!! | TATGAGTATTTTTTTCAAAA+GGG | + | chr7_1:51926718-51926737 | None:intergenic | 15.0% |
| !!! | TTATGAGTATTTTTTTCAAA+AGG | + | chr7_1:51926719-51926738 | None:intergenic | 15.0% |
| !! | GTTATGTATAAAAAAAAATG+AGG | - | chr7_1:51926876-51926895 | Msa1023780:intron | 15.0% |
| !! | TATTATAATTCTTGCATGTA+TGG | - | chr7_1:51926227-51926246 | Msa1023780:intron | 20.0% |
| !!! | TTTTAATTATGTATGAGAGT+AGG | - | chr7_1:51926313-51926332 | Msa1023780:intron | 20.0% |
| !! | TGTGAATAATAAACTACAAA+AGG | + | chr7_1:51926415-51926434 | None:intergenic | 20.0% |
| !!! | TATATGTGATGCTAAATTTT+AGG | + | chr7_1:51927437-51927456 | None:intergenic | 20.0% |
| !! | TATTATAATTCTTGCATGTA+TGG | - | chr7_1:51926227-51926246 | Msa1023780:intron | 20.0% |
| !!! | TTTTAATTATGTATGAGAGT+AGG | - | chr7_1:51926313-51926332 | Msa1023780:intron | 20.0% |
| !! | TGTGAATAATAAACTACAAA+AGG | + | chr7_1:51926415-51926434 | None:intergenic | 20.0% |
| !!! | TATATGTGATGCTAAATTTT+AGG | + | chr7_1:51927437-51927456 | None:intergenic | 20.0% |
| ! | AGAATTCTTCAAATTCATTG+AGG | + | chr7_1:51926074-51926093 | None:intergenic | 25.0% |
| !! | TTTGTCGACTATATATTCTT+AGG | - | chr7_1:51926190-51926209 | Msa1023780:intron | 25.0% |
| ! | AGGATGAAATATTCTATTAC+AGG | - | chr7_1:51926333-51926352 | Msa1023780:intron | 25.0% |
| ! | AACATAATTAAAAGCTTACG+AGG | - | chr7_1:51926516-51926535 | Msa1023780:intron | 25.0% |
| ! | GCAACAAAAACTATGAAATA+AGG | - | chr7_1:51927816-51927835 | Msa1023780:intron | 25.0% |
| ! | TTATTCAACAGTATATCCAT+GGG | + | chr7_1:51927878-51927897 | None:intergenic | 25.0% |
| ! | ATTATTCAACAGTATATCCA+TGG | + | chr7_1:51927879-51927898 | None:intergenic | 25.0% |
| ! | AGAATTCTTCAAATTCATTG+AGG | + | chr7_1:51926074-51926093 | None:intergenic | 25.0% |
| !! | TTTGTCGACTATATATTCTT+AGG | - | chr7_1:51926190-51926209 | Msa1023780:intron | 25.0% |
| ! | AGGATGAAATATTCTATTAC+AGG | - | chr7_1:51926333-51926352 | Msa1023780:intron | 25.0% |
| ! | AACATAATTAAAAGCTTACG+AGG | - | chr7_1:51926516-51926535 | Msa1023780:intron | 25.0% |
| ! | GCAACAAAAACTATGAAATA+AGG | - | chr7_1:51927816-51927835 | Msa1023780:intron | 25.0% |
| ! | TTATTCAACAGTATATCCAT+GGG | + | chr7_1:51927878-51927897 | None:intergenic | 25.0% |
| ! | ATTATTCAACAGTATATCCA+TGG | + | chr7_1:51927879-51927898 | None:intergenic | 25.0% |
| ! | AGAATTCTTCAAATTCATTG+AGG | + | chr7_1:51926074-51926093 | None:intergenic | 25.0% |
| ! | CTTCACATTCAAACCTTTTA+TGG | + | chr7_1:51925950-51925969 | None:intergenic | 30.0% |
| AATTCTCCAAGAAGATATAC+TGG | - | chr7_1:51926088-51926107 | Msa1023780:intron | 30.0% | |
| TAGTTTATTATTCACAGCTC+CGG | - | chr7_1:51926419-51926438 | Msa1023780:intron | 30.0% | |
| ATTGACAGCATATTAGAGTA+GGG | + | chr7_1:51927042-51927061 | None:intergenic | 30.0% | |
| AATTGACAGCATATTAGAGT+AGG | + | chr7_1:51927043-51927062 | None:intergenic | 30.0% | |
| AATTCCATTGTCTACTTGTA+GGG | - | chr7_1:51927367-51927386 | Msa1023780:intron | 30.0% | |
| !!! | AGCTAAGTTTTGGGTTTAAA+TGG | + | chr7_1:51927396-51927415 | None:intergenic | 30.0% |
| !! | TGTGATGCTAAATTTTAGGT+GGG | + | chr7_1:51927433-51927452 | None:intergenic | 30.0% |
| ! | ATGTGATGCTAAATTTTAGG+TGG | + | chr7_1:51927434-51927453 | None:intergenic | 30.0% |
| !! | TAAATTTTGTTGTGAACCCA+TGG | - | chr7_1:51927859-51927878 | Msa1023780:intron | 30.0% |
| ! | CTTCACATTCAAACCTTTTA+TGG | + | chr7_1:51925950-51925969 | None:intergenic | 30.0% |
| AATTCTCCAAGAAGATATAC+TGG | - | chr7_1:51926088-51926107 | Msa1023780:intron | 30.0% | |
| TAGTTTATTATTCACAGCTC+CGG | - | chr7_1:51926419-51926438 | Msa1023780:intron | 30.0% | |
| ATTGACAGCATATTAGAGTA+GGG | + | chr7_1:51927042-51927061 | None:intergenic | 30.0% | |
| AATTGACAGCATATTAGAGT+AGG | + | chr7_1:51927043-51927062 | None:intergenic | 30.0% | |
| AATTCCATTGTCTACTTGTA+GGG | - | chr7_1:51927367-51927386 | Msa1023780:intron | 30.0% | |
| !!! | AGCTAAGTTTTGGGTTTAAA+TGG | + | chr7_1:51927396-51927415 | None:intergenic | 30.0% |
| !! | TGTGATGCTAAATTTTAGGT+GGG | + | chr7_1:51927433-51927452 | None:intergenic | 30.0% |
| ! | ATGTGATGCTAAATTTTAGG+TGG | + | chr7_1:51927434-51927453 | None:intergenic | 30.0% |
| !! | TAAATTTTGTTGTGAACCCA+TGG | - | chr7_1:51927859-51927878 | Msa1023780:intron | 30.0% |
| ! | CTTCACATTCAAACCTTTTA+TGG | + | chr7_1:51925950-51925969 | None:intergenic | 30.0% |
| AATTCTCCAAGAAGATATAC+TGG | - | chr7_1:51926088-51926107 | Msa1023780:intron | 30.0% | |
| CATTGAGGATTATGTACTTG+CGG | + | chr7_1:51926059-51926078 | None:intergenic | 35.0% | |
| TGTTCTCCAGTATATCTTCT+TGG | + | chr7_1:51926097-51926116 | None:intergenic | 35.0% | |
| !!! | TTTGGATGTCATTTTGCTCT+TGG | + | chr7_1:51926994-51927013 | None:intergenic | 35.0% |
| ! | GTAGTTGGACACAATTCTTT+TGG | + | chr7_1:51927012-51927031 | None:intergenic | 35.0% |
| ! | AAATTAGTTGACTCTCGAAC+TGG | + | chr7_1:51927338-51927357 | None:intergenic | 35.0% |
| CTACAAGTAGACAATGGAAT+TGG | + | chr7_1:51927368-51927387 | None:intergenic | 35.0% | |
| CAATTCCATTGTCTACTTGT+AGG | - | chr7_1:51927366-51927385 | Msa1023780:intron | 35.0% | |
| ! | TCCATACAGAGCTAAGTTTT+GGG | + | chr7_1:51927405-51927424 | None:intergenic | 35.0% |
| AAATAGTGCATTAGAGTGTG+AGG | + | chr7_1:51927940-51927959 | None:intergenic | 35.0% | |
| CATTGAGGATTATGTACTTG+CGG | + | chr7_1:51926059-51926078 | None:intergenic | 35.0% | |
| TGTTCTCCAGTATATCTTCT+TGG | + | chr7_1:51926097-51926116 | None:intergenic | 35.0% | |
| !!! | TTTGGATGTCATTTTGCTCT+TGG | + | chr7_1:51926994-51927013 | None:intergenic | 35.0% |
| ! | GTAGTTGGACACAATTCTTT+TGG | + | chr7_1:51927012-51927031 | None:intergenic | 35.0% |
| ! | AAATTAGTTGACTCTCGAAC+TGG | + | chr7_1:51927338-51927357 | None:intergenic | 35.0% |
| CTACAAGTAGACAATGGAAT+TGG | + | chr7_1:51927368-51927387 | None:intergenic | 35.0% | |
| CAATTCCATTGTCTACTTGT+AGG | - | chr7_1:51927366-51927385 | Msa1023780:intron | 35.0% | |
| ! | TCCATACAGAGCTAAGTTTT+GGG | + | chr7_1:51927405-51927424 | None:intergenic | 35.0% |
| AAATAGTGCATTAGAGTGTG+AGG | + | chr7_1:51927940-51927959 | None:intergenic | 35.0% | |
| CATTGAGGATTATGTACTTG+CGG | + | chr7_1:51926059-51926078 | None:intergenic | 35.0% | |
| TGTTCTCCAGTATATCTTCT+TGG | + | chr7_1:51926097-51926116 | None:intergenic | 35.0% | |
| ! | GTGCTTTGAACGTCCATAAA+AGG | - | chr7_1:51925934-51925953 | Msa1023780:intron | 40.0% |
| AAAACACGTTGCGATAGATG+TGG | - | chr7_1:51925972-51925991 | Msa1023780:CDS | 40.0% | |
| GTGGTTGACATGTCTTCATA+TGG | + | chr7_1:51926031-51926050 | None:intergenic | 40.0% | |
| GAAGCATGAACGAACTTCAT+AGG | - | chr7_1:51926489-51926508 | Msa1023780:intron | 40.0% | |
| ACGAGGATTAAAAGCTTACG+AGG | - | chr7_1:51926533-51926552 | Msa1023780:intron | 40.0% | |
| GAAAACCATTGAGTCTGCTA+GGG | + | chr7_1:51926576-51926595 | None:intergenic | 40.0% | |
| TGAAAACCATTGAGTCTGCT+AGG | + | chr7_1:51926577-51926596 | None:intergenic | 40.0% | |
| AGAATTGTGTCCAACTACGT+TGG | - | chr7_1:51927014-51927033 | Msa1023780:intron | 40.0% | |
| GAATTGTGTCCAACTACGTT+GGG | - | chr7_1:51927015-51927034 | Msa1023780:intron | 40.0% | |
| !! | ACCCAAAACTTAGCTCTGTA+TGG | - | chr7_1:51927401-51927420 | Msa1023780:intron | 40.0% |
| ! | GTCCATACAGAGCTAAGTTT+TGG | + | chr7_1:51927406-51927425 | None:intergenic | 40.0% |
| GAACATCGTGGATGATTCTT+AGG | + | chr7_1:51928008-51928027 | None:intergenic | 40.0% | |
| ! | GTGCTTTGAACGTCCATAAA+AGG | - | chr7_1:51925934-51925953 | Msa1023780:intron | 40.0% |
| AAAACACGTTGCGATAGATG+TGG | - | chr7_1:51925972-51925991 | Msa1023780:CDS | 40.0% | |
| GTGGTTGACATGTCTTCATA+TGG | + | chr7_1:51926031-51926050 | None:intergenic | 40.0% | |
| GAAGCATGAACGAACTTCAT+AGG | - | chr7_1:51926489-51926508 | Msa1023780:intron | 40.0% | |
| ACGAGGATTAAAAGCTTACG+AGG | - | chr7_1:51926533-51926552 | Msa1023780:intron | 40.0% | |
| GAAAACCATTGAGTCTGCTA+GGG | + | chr7_1:51926576-51926595 | None:intergenic | 40.0% | |
| TGAAAACCATTGAGTCTGCT+AGG | + | chr7_1:51926577-51926596 | None:intergenic | 40.0% | |
| AGAATTGTGTCCAACTACGT+TGG | - | chr7_1:51927014-51927033 | Msa1023780:intron | 40.0% | |
| GAATTGTGTCCAACTACGTT+GGG | - | chr7_1:51927015-51927034 | Msa1023780:intron | 40.0% | |
| !! | ACCCAAAACTTAGCTCTGTA+TGG | - | chr7_1:51927401-51927420 | Msa1023780:intron | 40.0% |
| ! | GTCCATACAGAGCTAAGTTT+TGG | + | chr7_1:51927406-51927425 | None:intergenic | 40.0% |
| GAACATCGTGGATGATTCTT+AGG | + | chr7_1:51928008-51928027 | None:intergenic | 40.0% | |
| ! | GTGCTTTGAACGTCCATAAA+AGG | - | chr7_1:51925934-51925953 | Msa1023780:intron | 40.0% |
| AAAACACGTTGCGATAGATG+TGG | - | chr7_1:51925972-51925991 | Msa1023780:CDS | 40.0% | |
| GTGGTTGACATGTCTTCATA+TGG | + | chr7_1:51926031-51926050 | None:intergenic | 40.0% | |
| TCCCAAGTCCTTCGAAAGTA+GGG | - | chr7_1:51925911-51925930 | Msa1023780:CDS | 45.0% | |
| TTATGTACTTGCGGCTTCTG+TGG | + | chr7_1:51926050-51926069 | None:intergenic | 45.0% | |
| CCGAATACATCACACATGAC+CGG | + | chr7_1:51926441-51926460 | None:intergenic | 45.0% | |
| CCGGTCATGTGTGATGTATT+CGG | - | chr7_1:51926438-51926457 | Msa1023780:intron | 45.0% | |
| ACAAACCCTAGCAGACTCAA+TGG | - | chr7_1:51926568-51926587 | Msa1023780:intron | 45.0% | |
| GAGACCCTACAAGTAGACAA+TGG | + | chr7_1:51927374-51927393 | None:intergenic | 45.0% | |
| AGTGCATTAGAGTGTGAGGT+AGG | + | chr7_1:51927936-51927955 | None:intergenic | 45.0% | |
| TCCCAAGTCCTTCGAAAGTA+GGG | - | chr7_1:51925911-51925930 | Msa1023780:CDS | 45.0% | |
| TTATGTACTTGCGGCTTCTG+TGG | + | chr7_1:51926050-51926069 | None:intergenic | 45.0% | |
| CCGAATACATCACACATGAC+CGG | + | chr7_1:51926441-51926460 | None:intergenic | 45.0% | |
| CCGGTCATGTGTGATGTATT+CGG | - | chr7_1:51926438-51926457 | Msa1023780:intron | 45.0% | |
| ACAAACCCTAGCAGACTCAA+TGG | - | chr7_1:51926568-51926587 | Msa1023780:intron | 45.0% | |
| GAGACCCTACAAGTAGACAA+TGG | + | chr7_1:51927374-51927393 | None:intergenic | 45.0% | |
| AGTGCATTAGAGTGTGAGGT+AGG | + | chr7_1:51927936-51927955 | None:intergenic | 45.0% | |
| TCCCAAGTCCTTCGAAAGTA+GGG | - | chr7_1:51925911-51925930 | Msa1023780:CDS | 45.0% | |
| TTATGTACTTGCGGCTTCTG+TGG | + | chr7_1:51926050-51926069 | None:intergenic | 45.0% | |
| !!! | TTATTAATTGAATATTTTAA+TGG | - | chr7_1:51926637-51926656 | Msa1023780:intron | 5.0% |
| !! | TCATAAATATTATTAAAAAA+AGG | - | chr7_1:51927065-51927084 | Msa1023780:intron | 5.0% |
| !!! | ATTTATTTATTTTTATTTGA+AGG | - | chr7_1:51927156-51927175 | Msa1023780:intron | 5.0% |
| !!! | TTTTTTTTAAAAAAAAAACT+TGG | - | chr7_1:51927309-51927328 | Msa1023780:intron | 5.0% |
| !!! | TTATTAATTGAATATTTTAA+TGG | - | chr7_1:51926637-51926656 | Msa1023780:intron | 5.0% |
| !! | TCATAAATATTATTAAAAAA+AGG | - | chr7_1:51927065-51927084 | Msa1023780:intron | 5.0% |
| !!! | ATTTATTTATTTTTATTTGA+AGG | - | chr7_1:51927156-51927175 | Msa1023780:intron | 5.0% |
| !!! | TTTTTTTTAAAAAAAAAACT+TGG | - | chr7_1:51927309-51927328 | Msa1023780:intron | 5.0% |
| TGGGACAATCAAAGCAAGCG+TGG | + | chr7_1:51925896-51925915 | None:intergenic | 50.0% | |
| GTCCCAAGTCCTTCGAAAGT+AGG | - | chr7_1:51925910-51925929 | Msa1023780:CDS | 50.0% | |
| CCCCTACTTTCGAAGGACTT+GGG | + | chr7_1:51925915-51925934 | None:intergenic | 50.0% | |
| CCCAAGTCCTTCGAAAGTAG+GGG | - | chr7_1:51925912-51925931 | Msa1023780:CDS | 50.0% | |
| ACCCCTACTTTCGAAGGACT+TGG | + | chr7_1:51925916-51925935 | None:intergenic | 50.0% | |
| ! | CAAAGCACCCCTACTTTCGA+AGG | + | chr7_1:51925922-51925941 | None:intergenic | 50.0% |
| AAAGCAAGCGTGGAACATCG+TGG | + | chr7_1:51928020-51928039 | None:intergenic | 50.0% | |
| TGGGACAATCAAAGCAAGCG+TGG | + | chr7_1:51925896-51925915 | None:intergenic | 50.0% | |
| GTCCCAAGTCCTTCGAAAGT+AGG | - | chr7_1:51925910-51925929 | Msa1023780:CDS | 50.0% | |
| CCCCTACTTTCGAAGGACTT+GGG | + | chr7_1:51925915-51925934 | None:intergenic | 50.0% | |
| CCCAAGTCCTTCGAAAGTAG+GGG | - | chr7_1:51925912-51925931 | Msa1023780:CDS | 50.0% | |
| ACCCCTACTTTCGAAGGACT+TGG | + | chr7_1:51925916-51925935 | None:intergenic | 50.0% | |
| ! | CAAAGCACCCCTACTTTCGA+AGG | + | chr7_1:51925922-51925941 | None:intergenic | 50.0% |
| AAAGCAAGCGTGGAACATCG+TGG | + | chr7_1:51928020-51928039 | None:intergenic | 50.0% | |
| TGGGACAATCAAAGCAAGCG+TGG | + | chr7_1:51925896-51925915 | None:intergenic | 50.0% | |
| GTCCCAAGTCCTTCGAAAGT+AGG | - | chr7_1:51925910-51925929 | Msa1023780:CDS | 50.0% | |
| CCCCTACTTTCGAAGGACTT+GGG | + | chr7_1:51925915-51925934 | None:intergenic | 50.0% | |
| CCCAAGTCCTTCGAAAGTAG+GGG | - | chr7_1:51925912-51925931 | Msa1023780:CDS | 50.0% | |
| ACCCCTACTTTCGAAGGACT+TGG | + | chr7_1:51925916-51925935 | None:intergenic | 50.0% | |
| ! | CAAAGCACCCCTACTTTCGA+AGG | + | chr7_1:51925922-51925941 | None:intergenic | 50.0% |
| GAGTAGGGTCCCAACGTAGT+TGG | + | chr7_1:51927027-51927046 | None:intergenic | 55.0% | |
| GAGTAGGGTCCCAACGTAGT+TGG | + | chr7_1:51927027-51927046 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 51925888 | 51930400 | 51925888 | ID=Msa1023780;Name=Msa1023780 |
| chr7_1 | mRNA | 51925888 | 51930400 | 51925888 | ID=Msa1023780-mRNA-1;Parent=Msa1023780;Name=Msa1023780-mRNA-1;_AED=0.21;_eAED=0.39;_QI=0|0|0|1|0|0|6|0|202 |
| chr7_1 | exon | 51930227 | 51930400 | 51930227 | ID=Msa1023780-mRNA-1:exon:10245;Parent=Msa1023780-mRNA-1 |
| chr7_1 | exon | 51930153 | 51930200 | 51930153 | ID=Msa1023780-mRNA-1:exon:10244;Parent=Msa1023780-mRNA-1 |
| chr7_1 | exon | 51928093 | 51928236 | 51928093 | ID=Msa1023780-mRNA-1:exon:10243;Parent=Msa1023780-mRNA-1 |
| chr7_1 | exon | 51928019 | 51928066 | 51928019 | ID=Msa1023780-mRNA-1:exon:10242;Parent=Msa1023780-mRNA-1 |
| chr7_1 | exon | 51925962 | 51926105 | 51925962 | ID=Msa1023780-mRNA-1:exon:10241;Parent=Msa1023780-mRNA-1 |
| chr7_1 | exon | 51925888 | 51925935 | 51925888 | ID=Msa1023780-mRNA-1:exon:10240;Parent=Msa1023780-mRNA-1 |
| chr7_1 | CDS | 51930227 | 51930400 | 51930227 | ID=Msa1023780-mRNA-1:cds;Parent=Msa1023780-mRNA-1 |
| chr7_1 | CDS | 51930153 | 51930200 | 51930153 | ID=Msa1023780-mRNA-1:cds;Parent=Msa1023780-mRNA-1 |
| chr7_1 | CDS | 51928093 | 51928236 | 51928093 | ID=Msa1023780-mRNA-1:cds;Parent=Msa1023780-mRNA-1 |
| chr7_1 | CDS | 51928019 | 51928066 | 51928019 | ID=Msa1023780-mRNA-1:cds;Parent=Msa1023780-mRNA-1 |
| chr7_1 | CDS | 51925962 | 51926105 | 51925962 | ID=Msa1023780-mRNA-1:cds;Parent=Msa1023780-mRNA-1 |
| chr7_1 | CDS | 51925888 | 51925935 | 51925888 | ID=Msa1023780-mRNA-1:cds;Parent=Msa1023780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
