Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1025190 | XP_003623338.1 | 92.133 | 483 | 33 | 3 | 1 | 482 | 53 | 531 | 0.0 | 887 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1025190 | sp|Q2PEG7|NSP2_LOTJA | 26.332 | 319 | 191 | 13 | 165 | 458 | 113 | 412 | 2.84e-12 | 72.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1025190 | G7KSD5 | 92.133 | 483 | 33 | 3 | 1 | 482 | 53 | 531 | 0.0 | 887 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1025190 | TF | GRAS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1025190 | MtrunA17_Chr7g0243151 | 92.133 | 483 | 33 | 3 | 1 | 482 | 53 | 531 | 0.0 | 887 |
| Msa1025190 | MtrunA17_Chr3g0114841 | 24.465 | 327 | 195 | 13 | 165 | 459 | 115 | 421 | 1.79e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 77 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTGACATAATTGATTAT+TGG | 0.190898 | 7_1:+55449721 | Msa1025190:CDS |
| ACCAATTTGTGGACTCAAAA+TGG | 0.208342 | 7_1:-55449133 | None:intergenic |
| TGAAATTGACATCAATTAAA+TGG | 0.209268 | 7_1:+55449805 | Msa1025190:CDS |
| TTTCTTCATCAATTGGAAAT+TGG | 0.210829 | 7_1:-55449068 | None:intergenic |
| TACTTTGCCACAAGAAAATA+TGG | 0.244532 | 7_1:+55449377 | Msa1025190:CDS |
| AACTCCCTTCACTTTCTTCT+TGG | 0.260798 | 7_1:-55449176 | None:intergenic |
| ATTGCAACAAAGCTTTATAA+TGG | 0.275966 | 7_1:-55450196 | None:intergenic |
| ATCAAGGGAATTATTACTTT+TGG | 0.281766 | 7_1:+55450104 | Msa1025190:CDS |
| GACATAATTGATTATTGGTT+TGG | 0.287363 | 7_1:+55449726 | Msa1025190:CDS |
| CTTGTATATCTTCTCTTGAT+TGG | 0.318337 | 7_1:+55450288 | Msa1025190:CDS |
| GATATGATCATTGGTGAATA+TGG | 0.332452 | 7_1:-55449046 | None:intergenic |
| TCCAAGGTTTCTTCATCAAT+TGG | 0.335882 | 7_1:-55449075 | None:intergenic |
| ATACTCATAAAGTTCCCTTT+TGG | 0.352223 | 7_1:-55449868 | None:intergenic |
| CTTGGAACTTCCATCTCTAA+TGG | 0.352756 | 7_1:+55449092 | Msa1025190:CDS |
| ATGAAAATTCTGAATGTGTT+TGG | 0.359147 | 7_1:+55449832 | Msa1025190:CDS |
| GAACATAGTCATCATCAATA+TGG | 0.362230 | 7_1:-55448930 | None:intergenic |
| TCTTGTATGCCTCGCCTTTG+AGG | 0.374060 | 7_1:-55449587 | None:intergenic |
| AATGATAGGTCTTCCACATA+TGG | 0.384690 | 7_1:+55450007 | Msa1025190:CDS |
| CCTCGGAGACAGTTGTAAAA+TGG | 0.387068 | 7_1:+55449248 | Msa1025190:CDS |
| AGTGAGTCTTCCACACTTGA+TGG | 0.390562 | 7_1:+55449413 | Msa1025190:CDS |
| GAAATTGAAGGTAGAGGAAA+AGG | 0.406350 | 7_1:+55449908 | Msa1025190:CDS |
| TCTTGAATATTACCAATTTG+TGG | 0.407532 | 7_1:-55449144 | None:intergenic |
| CTCTTGATTGGTTACAAACA+TGG | 0.411194 | 7_1:+55450300 | Msa1025190:CDS |
| TCTGATTTCATTGAAAGTGT+TGG | 0.420317 | 7_1:-55449330 | None:intergenic |
| TTGGCTTTCAAGTTAATGAT+AGG | 0.426926 | 7_1:+55449993 | Msa1025190:CDS |
| GAAGGTAGAGGAAAAGGAAT+TGG | 0.435590 | 7_1:+55449914 | Msa1025190:CDS |
| ATTGATTATTGGTTTGGAAA+TGG | 0.443553 | 7_1:+55449732 | Msa1025190:CDS |
| TCCAATTGATGAAGAAACCT+TGG | 0.445970 | 7_1:+55449074 | Msa1025190:CDS |
| TGGAAATTGGATATGATCAT+TGG | 0.449728 | 7_1:-55449055 | None:intergenic |
| GATCAAGAACTATGGTATCA+AGG | 0.453234 | 7_1:+55450088 | Msa1025190:CDS |
| AGTGATGGCTATCATCATAA+AGG | 0.457503 | 7_1:+55450335 | Msa1025190:CDS |
| GAGGATTTGATCAAGAACTA+TGG | 0.460555 | 7_1:+55450080 | Msa1025190:CDS |
| ATCAAAATAATGAACGAAAC+GGG | 0.464863 | 7_1:+55449954 | Msa1025190:CDS |
| GTCTCAAGAGAGTCACCAAT+TGG | 0.467270 | 7_1:-55449519 | None:intergenic |
| GAAACAGCCTCCAAGAGAAA+AGG | 0.477495 | 7_1:-55449765 | None:intergenic |
| TGCATGTGAAGTGTTGTTTG+TGG | 0.478913 | 7_1:+55450262 | Msa1025190:CDS |
| TGTTGGACTCCATGCATCAC+AGG | 0.496115 | 7_1:-55449313 | None:intergenic |
| GCTCAAGAAGTGACAAATCA+TGG | 0.497130 | 7_1:+55449558 | Msa1025190:CDS |
| GATCAAAATAATGAACGAAA+CGG | 0.497362 | 7_1:+55449953 | Msa1025190:CDS |
| CTTCTAACCATTCCCATATG+TGG | 0.507260 | 7_1:-55450020 | None:intergenic |
| TCATCCATGATGATGCCATA+TGG | 0.509020 | 7_1:-55448952 | None:intergenic |
| CATTAGAGATGGAAGTTCCA+AGG | 0.509956 | 7_1:-55449091 | None:intergenic |
| ATCATGTGGTTTGAAATTGA+AGG | 0.512511 | 7_1:+55449896 | Msa1025190:CDS |
| GATGATGACTATGTTCCATA+TGG | 0.514828 | 7_1:+55448937 | Msa1025190:CDS |
| CATGGTGAAGCCTTGGAGAA+AGG | 0.516575 | 7_1:+55449441 | Msa1025190:CDS |
| GGAAGCACATGGTGAAGCCT+TGG | 0.523810 | 7_1:+55449434 | Msa1025190:CDS |
| TGGTTTGAAATTGAAGGTAG+AGG | 0.525487 | 7_1:+55449902 | Msa1025190:CDS |
| GGTTTGGAAATGGTGTTCAA+TGG | 0.527955 | 7_1:+55449742 | Msa1025190:CDS |
| ATGATAGGTCTTCCACATAT+GGG | 0.529724 | 7_1:+55450008 | Msa1025190:CDS |
| TAAAGGGAAATGATCATAAG+TGG | 0.536816 | 7_1:-55449280 | None:intergenic |
| ATCAAGAACTATGGTATCAA+GGG | 0.539287 | 7_1:+55450089 | Msa1025190:CDS |
| GATTCTAATTCCATTAGAGA+TGG | 0.545913 | 7_1:-55449102 | None:intergenic |
| AAAATTCTCCCTGTGATGCA+TGG | 0.552151 | 7_1:+55449304 | Msa1025190:CDS |
| TATGAGTATGCTAAATCATG+TGG | 0.552563 | 7_1:+55449882 | Msa1025190:CDS |
| GATTTGAACTATACCCTTCG+AGG | 0.557019 | 7_1:-55449224 | None:intergenic |
| GAAATGATCATAAGTGGCAC+TGG | 0.557550 | 7_1:-55449274 | None:intergenic |
| TGTTCCATATGGCATCATCA+TGG | 0.566239 | 7_1:+55448948 | Msa1025190:CDS |
| TCTTGATTGGTTACAAACAT+GGG | 0.569487 | 7_1:+55450301 | Msa1025190:CDS |
| ATAGTTCTTGATCAAATCCT+CGG | 0.572634 | 7_1:-55450078 | None:intergenic |
| TCAAGTGTGGAAGACTCACT+TGG | 0.579458 | 7_1:-55449410 | None:intergenic |
| CTATACCCTTCGAGGACATG+TGG | 0.581600 | 7_1:-55449216 | None:intergenic |
| CCATATGGCATCATCATGGA+TGG | 0.582147 | 7_1:+55448907 | None:intergenic |
| CAATCAAGAGAAGATATACA+AGG | 0.583066 | 7_1:-55450287 | None:intergenic |
| AGGTCTTCCACATATGGGAA+TGG | 0.588806 | 7_1:+55450013 | Msa1025190:CDS |
| GAATACCAAGAAGAAAGTGA+AGG | 0.607663 | 7_1:+55449171 | Msa1025190:CDS |
| TGGGAAGAGATGAAAAGTGA+TGG | 0.608114 | 7_1:+55450320 | Msa1025190:CDS |
| AATACCAAGAAGAAAGTGAA+GGG | 0.608570 | 7_1:+55449172 | Msa1025190:CDS |
| TTCATCACAATCTTCTAACA+TGG | 0.616759 | 7_1:-55449700 | None:intergenic |
| CCATGTGCTTCCATCAAGTG+TGG | 0.618160 | 7_1:-55449423 | None:intergenic |
| ATGATCATAAGTGGCACTGG+CGG | 0.631598 | 7_1:-55449271 | None:intergenic |
| GTTGGACTCCATGCATCACA+GGG | 0.638138 | 7_1:-55449312 | None:intergenic |
| AAAATAATGAACGAAACGGG+TGG | 0.646793 | 7_1:+55449957 | Msa1025190:CDS |
| GGGTATAGTTCAAATCCCCT+CGG | 0.648026 | 7_1:+55449231 | Msa1025190:CDS |
| CCACACTTGATGGAAGCACA+TGG | 0.654957 | 7_1:+55449423 | Msa1025190:CDS |
| AATCATGGAGAATACCTCAA+AGG | 0.661739 | 7_1:+55449573 | Msa1025190:CDS |
| AAGAGAGTCACCAATTGGAG+TGG | 0.663623 | 7_1:-55449514 | None:intergenic |
| TGGAGAATACCTCAAAGGCG+AGG | 0.686092 | 7_1:+55449578 | Msa1025190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTGACATAATTGATTAT+TGG | + | chr7_1:55449721-55449740 | Msa1025190:CDS | 15.0% |
| !! | AAATTGACATAATTGATTAT+TGG | + | chr7_1:55449721-55449740 | Msa1025190:CDS | 15.0% |
| !!! | CTTTTAAGGTATTTTATCAA+GGG | + | chr7_1:55449622-55449641 | Msa1025190:CDS | 20.0% |
| !! | TGAAATTGACATCAATTAAA+TGG | + | chr7_1:55449805-55449824 | Msa1025190:CDS | 20.0% |
| !!! | AATTTCATGTCATTTTTTGA+AGG | + | chr7_1:55450164-55450183 | Msa1025190:CDS | 20.0% |
| !!! | ATTTCATGTCATTTTTTGAA+GGG | + | chr7_1:55450165-55450184 | Msa1025190:CDS | 20.0% |
| !!! | CTTTTAAGGTATTTTATCAA+GGG | + | chr7_1:55449622-55449641 | Msa1025190:CDS | 20.0% |
| !! | TGAAATTGACATCAATTAAA+TGG | + | chr7_1:55449805-55449824 | Msa1025190:CDS | 20.0% |
| !!! | AATTTCATGTCATTTTTTGA+AGG | + | chr7_1:55450164-55450183 | Msa1025190:CDS | 20.0% |
| !!! | ATTTCATGTCATTTTTTGAA+GGG | + | chr7_1:55450165-55450184 | Msa1025190:CDS | 20.0% |
| ! | TTTCTTCATCAATTGGAAAT+TGG | - | chr7_1:55449071-55449090 | None:intergenic | 25.0% |
| ! | TCTTGAATATTACCAATTTG+TGG | - | chr7_1:55449147-55449166 | None:intergenic | 25.0% |
| !! | TCAATTTCCATATTTTCTTG+TGG | - | chr7_1:55449387-55449406 | None:intergenic | 25.0% |
| !!! | GCTTTTAAGGTATTTTATCA+AGG | + | chr7_1:55449621-55449640 | Msa1025190:CDS | 25.0% |
| !! | GACATAATTGATTATTGGTT+TGG | + | chr7_1:55449726-55449745 | Msa1025190:CDS | 25.0% |
| !!! | ATTGATTATTGGTTTGGAAA+TGG | + | chr7_1:55449732-55449751 | Msa1025190:CDS | 25.0% |
| ! | ATGAAAATTCTGAATGTGTT+TGG | + | chr7_1:55449832-55449851 | Msa1025190:CDS | 25.0% |
| ! | GATCAAAATAATGAACGAAA+CGG | + | chr7_1:55449953-55449972 | Msa1025190:CDS | 25.0% |
| ! | ATCAAAATAATGAACGAAAC+GGG | + | chr7_1:55449954-55449973 | Msa1025190:CDS | 25.0% |
| !! | AAATGCTTATGAGTTTTTGA+AGG | + | chr7_1:55450052-55450071 | Msa1025190:CDS | 25.0% |
| !! | ATCAAGGGAATTATTACTTT+TGG | + | chr7_1:55450104-55450123 | Msa1025190:CDS | 25.0% |
| !! | ATTGCAACAAAGCTTTATAA+TGG | - | chr7_1:55450199-55450218 | None:intergenic | 25.0% |
| ! | TTTCTTCATCAATTGGAAAT+TGG | - | chr7_1:55449071-55449090 | None:intergenic | 25.0% |
| ! | TCTTGAATATTACCAATTTG+TGG | - | chr7_1:55449147-55449166 | None:intergenic | 25.0% |
| !! | TCAATTTCCATATTTTCTTG+TGG | - | chr7_1:55449387-55449406 | None:intergenic | 25.0% |
| !!! | GCTTTTAAGGTATTTTATCA+AGG | + | chr7_1:55449621-55449640 | Msa1025190:CDS | 25.0% |
| !! | GACATAATTGATTATTGGTT+TGG | + | chr7_1:55449726-55449745 | Msa1025190:CDS | 25.0% |
| !!! | ATTGATTATTGGTTTGGAAA+TGG | + | chr7_1:55449732-55449751 | Msa1025190:CDS | 25.0% |
| ! | ATGAAAATTCTGAATGTGTT+TGG | + | chr7_1:55449832-55449851 | Msa1025190:CDS | 25.0% |
| ! | GATCAAAATAATGAACGAAA+CGG | + | chr7_1:55449953-55449972 | Msa1025190:CDS | 25.0% |
| ! | ATCAAAATAATGAACGAAAC+GGG | + | chr7_1:55449954-55449973 | Msa1025190:CDS | 25.0% |
| !! | AAATGCTTATGAGTTTTTGA+AGG | + | chr7_1:55450052-55450071 | Msa1025190:CDS | 25.0% |
| !! | ATCAAGGGAATTATTACTTT+TGG | + | chr7_1:55450104-55450123 | Msa1025190:CDS | 25.0% |
| !! | ATTGCAACAAAGCTTTATAA+TGG | - | chr7_1:55450199-55450218 | None:intergenic | 25.0% |
| GAACATAGTCATCATCAATA+TGG | - | chr7_1:55448933-55448952 | None:intergenic | 30.0% | |
| GATATGATCATTGGTGAATA+TGG | - | chr7_1:55449049-55449068 | None:intergenic | 30.0% | |
| TGGAAATTGGATATGATCAT+TGG | - | chr7_1:55449058-55449077 | None:intergenic | 30.0% | |
| GATTCTAATTCCATTAGAGA+TGG | - | chr7_1:55449105-55449124 | None:intergenic | 30.0% | |
| AATACCAAGAAGAAAGTGAA+GGG | + | chr7_1:55449172-55449191 | Msa1025190:CDS | 30.0% | |
| ! | CATGTGGAAAATTTTGTGAA+GGG | - | chr7_1:55449203-55449222 | None:intergenic | 30.0% |
| ! | ACATGTGGAAAATTTTGTGA+AGG | - | chr7_1:55449204-55449223 | None:intergenic | 30.0% |
| TAAAGGGAAATGATCATAAG+TGG | - | chr7_1:55449283-55449302 | None:intergenic | 30.0% | |
| ! | TCTGATTTCATTGAAAGTGT+TGG | - | chr7_1:55449333-55449352 | None:intergenic | 30.0% |
| TACTTTGCCACAAGAAAATA+TGG | + | chr7_1:55449377-55449396 | Msa1025190:CDS | 30.0% | |
| ! | TGAGACACTTGCATTTTATT+TGG | + | chr7_1:55449536-55449555 | Msa1025190:CDS | 30.0% |
| ! | GGTATTTTATCAAGGGAATT+TGG | + | chr7_1:55449629-55449648 | Msa1025190:CDS | 30.0% |
| ! | TTTTATCAAGGGAATTTGGT+TGG | + | chr7_1:55449633-55449652 | Msa1025190:CDS | 30.0% |
| !! | TGGAAAAATGGCTCATTTTT+CGG | + | chr7_1:55449653-55449672 | Msa1025190:CDS | 30.0% |
| TTCATCACAATCTTCTAACA+TGG | - | chr7_1:55449703-55449722 | None:intergenic | 30.0% | |
| !! | TGAATGTGTTTGGAATTTTG+AGG | + | chr7_1:55449842-55449861 | Msa1025190:CDS | 30.0% |
| ! | ATACTCATAAAGTTCCCTTT+TGG | - | chr7_1:55449871-55449890 | None:intergenic | 30.0% |
| TATGAGTATGCTAAATCATG+TGG | + | chr7_1:55449882-55449901 | Msa1025190:CDS | 30.0% | |
| ! | ATCATGTGGTTTGAAATTGA+AGG | + | chr7_1:55449896-55449915 | Msa1025190:CDS | 30.0% |
| !! | TTGGCTTTCAAGTTAATGAT+AGG | + | chr7_1:55449993-55450012 | Msa1025190:CDS | 30.0% |
| ATAGTTCTTGATCAAATCCT+CGG | - | chr7_1:55450081-55450100 | None:intergenic | 30.0% | |
| ATCAAGAACTATGGTATCAA+GGG | + | chr7_1:55450089-55450108 | Msa1025190:CDS | 30.0% | |
| !! | GGAATTATTACTTTTGGTGA+TGG | + | chr7_1:55450110-55450129 | Msa1025190:CDS | 30.0% |
| !!! | GTCATTTTTTGAAGGGAATT+TGG | + | chr7_1:55450172-55450191 | Msa1025190:CDS | 30.0% |
| CAATCAAGAGAAGATATACA+AGG | - | chr7_1:55450290-55450309 | None:intergenic | 30.0% | |
| CTTGTATATCTTCTCTTGAT+TGG | + | chr7_1:55450288-55450307 | Msa1025190:CDS | 30.0% | |
| ! | TCTTGATTGGTTACAAACAT+GGG | + | chr7_1:55450301-55450320 | Msa1025190:CDS | 30.0% |
| GAACATAGTCATCATCAATA+TGG | - | chr7_1:55448933-55448952 | None:intergenic | 30.0% | |
| GATATGATCATTGGTGAATA+TGG | - | chr7_1:55449049-55449068 | None:intergenic | 30.0% | |
| TGGAAATTGGATATGATCAT+TGG | - | chr7_1:55449058-55449077 | None:intergenic | 30.0% | |
| GATTCTAATTCCATTAGAGA+TGG | - | chr7_1:55449105-55449124 | None:intergenic | 30.0% | |
| AATACCAAGAAGAAAGTGAA+GGG | + | chr7_1:55449172-55449191 | Msa1025190:CDS | 30.0% | |
| ! | CATGTGGAAAATTTTGTGAA+GGG | - | chr7_1:55449203-55449222 | None:intergenic | 30.0% |
| ! | ACATGTGGAAAATTTTGTGA+AGG | - | chr7_1:55449204-55449223 | None:intergenic | 30.0% |
| TAAAGGGAAATGATCATAAG+TGG | - | chr7_1:55449283-55449302 | None:intergenic | 30.0% | |
| ! | TCTGATTTCATTGAAAGTGT+TGG | - | chr7_1:55449333-55449352 | None:intergenic | 30.0% |
| TACTTTGCCACAAGAAAATA+TGG | + | chr7_1:55449377-55449396 | Msa1025190:CDS | 30.0% | |
| ! | TGAGACACTTGCATTTTATT+TGG | + | chr7_1:55449536-55449555 | Msa1025190:CDS | 30.0% |
| ! | GGTATTTTATCAAGGGAATT+TGG | + | chr7_1:55449629-55449648 | Msa1025190:CDS | 30.0% |
| ! | TTTTATCAAGGGAATTTGGT+TGG | + | chr7_1:55449633-55449652 | Msa1025190:CDS | 30.0% |
| !! | TGGAAAAATGGCTCATTTTT+CGG | + | chr7_1:55449653-55449672 | Msa1025190:CDS | 30.0% |
| TTCATCACAATCTTCTAACA+TGG | - | chr7_1:55449703-55449722 | None:intergenic | 30.0% | |
| !! | TGAATGTGTTTGGAATTTTG+AGG | + | chr7_1:55449842-55449861 | Msa1025190:CDS | 30.0% |
| ! | ATACTCATAAAGTTCCCTTT+TGG | - | chr7_1:55449871-55449890 | None:intergenic | 30.0% |
| TATGAGTATGCTAAATCATG+TGG | + | chr7_1:55449882-55449901 | Msa1025190:CDS | 30.0% | |
| ! | ATCATGTGGTTTGAAATTGA+AGG | + | chr7_1:55449896-55449915 | Msa1025190:CDS | 30.0% |
| !! | TTGGCTTTCAAGTTAATGAT+AGG | + | chr7_1:55449993-55450012 | Msa1025190:CDS | 30.0% |
| ATAGTTCTTGATCAAATCCT+CGG | - | chr7_1:55450081-55450100 | None:intergenic | 30.0% | |
| ATCAAGAACTATGGTATCAA+GGG | + | chr7_1:55450089-55450108 | Msa1025190:CDS | 30.0% | |
| !! | GGAATTATTACTTTTGGTGA+TGG | + | chr7_1:55450110-55450129 | Msa1025190:CDS | 30.0% |
| !!! | GTCATTTTTTGAAGGGAATT+TGG | + | chr7_1:55450172-55450191 | Msa1025190:CDS | 30.0% |
| CAATCAAGAGAAGATATACA+AGG | - | chr7_1:55450290-55450309 | None:intergenic | 30.0% | |
| CTTGTATATCTTCTCTTGAT+TGG | + | chr7_1:55450288-55450307 | Msa1025190:CDS | 30.0% | |
| ! | TCTTGATTGGTTACAAACAT+GGG | + | chr7_1:55450301-55450320 | Msa1025190:CDS | 30.0% |
| GATGATGACTATGTTCCATA+TGG | + | chr7_1:55448937-55448956 | Msa1025190:CDS | 35.0% | |
| TCCAATTGATGAAGAAACCT+TGG | + | chr7_1:55449074-55449093 | Msa1025190:CDS | 35.0% | |
| TCCAAGGTTTCTTCATCAAT+TGG | - | chr7_1:55449078-55449097 | None:intergenic | 35.0% | |
| !! | TCCATTTTGAGTCCACAAAT+TGG | + | chr7_1:55449132-55449151 | Msa1025190:CDS | 35.0% |
| ACCAATTTGTGGACTCAAAA+TGG | - | chr7_1:55449136-55449155 | None:intergenic | 35.0% | |
| GAATACCAAGAAGAAAGTGA+AGG | + | chr7_1:55449171-55449190 | Msa1025190:CDS | 35.0% | |
| ! | CACAGGGAGAATTTTGTAAA+GGG | - | chr7_1:55449299-55449318 | None:intergenic | 35.0% |
| ! | TCACAGGGAGAATTTTGTAA+AGG | - | chr7_1:55449300-55449319 | None:intergenic | 35.0% |
| ! | CAATTGGAGTGGTAACTTTT+TGG | - | chr7_1:55449506-55449525 | None:intergenic | 35.0% |
| CAAAAAGTTACCACTCCAAT+TGG | + | chr7_1:55449504-55449523 | Msa1025190:CDS | 35.0% | |
| AATCATGGAGAATACCTCAA+AGG | + | chr7_1:55449573-55449592 | Msa1025190:CDS | 35.0% | |
| !!! | GAATTTTCAGGCTGCTTTTA+AGG | + | chr7_1:55449608-55449627 | Msa1025190:CDS | 35.0% |
| AGGGAATTTGGTTGGAAAAA+TGG | + | chr7_1:55449641-55449660 | Msa1025190:CDS | 35.0% | |
| !! | GAATTTTGAGGATGCCAAAA+GGG | + | chr7_1:55449854-55449873 | Msa1025190:CDS | 35.0% |
| ! | TGGTTTGAAATTGAAGGTAG+AGG | + | chr7_1:55449902-55449921 | Msa1025190:CDS | 35.0% |
| GAAATTGAAGGTAGAGGAAA+AGG | + | chr7_1:55449908-55449927 | Msa1025190:CDS | 35.0% | |
| AAAATAATGAACGAAACGGG+TGG | + | chr7_1:55449957-55449976 | Msa1025190:CDS | 35.0% | |
| AATGATAGGTCTTCCACATA+TGG | + | chr7_1:55450007-55450026 | Msa1025190:CDS | 35.0% | |
| ATGATAGGTCTTCCACATAT+GGG | + | chr7_1:55450008-55450027 | Msa1025190:CDS | 35.0% | |
| GAGGATTTGATCAAGAACTA+TGG | + | chr7_1:55450080-55450099 | Msa1025190:CDS | 35.0% | |
| GATCAAGAACTATGGTATCA+AGG | + | chr7_1:55450088-55450107 | Msa1025190:CDS | 35.0% | |
| ! | CTCTTGATTGGTTACAAACA+TGG | + | chr7_1:55450300-55450319 | Msa1025190:CDS | 35.0% |
| AGTGATGGCTATCATCATAA+AGG | + | chr7_1:55450335-55450354 | Msa1025190:CDS | 35.0% | |
| GATGATGACTATGTTCCATA+TGG | + | chr7_1:55448937-55448956 | Msa1025190:CDS | 35.0% | |
| TCCAATTGATGAAGAAACCT+TGG | + | chr7_1:55449074-55449093 | Msa1025190:CDS | 35.0% | |
| TCCAAGGTTTCTTCATCAAT+TGG | - | chr7_1:55449078-55449097 | None:intergenic | 35.0% | |
| !! | TCCATTTTGAGTCCACAAAT+TGG | + | chr7_1:55449132-55449151 | Msa1025190:CDS | 35.0% |
| ACCAATTTGTGGACTCAAAA+TGG | - | chr7_1:55449136-55449155 | None:intergenic | 35.0% | |
| GAATACCAAGAAGAAAGTGA+AGG | + | chr7_1:55449171-55449190 | Msa1025190:CDS | 35.0% | |
| ! | CACAGGGAGAATTTTGTAAA+GGG | - | chr7_1:55449299-55449318 | None:intergenic | 35.0% |
| ! | TCACAGGGAGAATTTTGTAA+AGG | - | chr7_1:55449300-55449319 | None:intergenic | 35.0% |
| ! | CAATTGGAGTGGTAACTTTT+TGG | - | chr7_1:55449506-55449525 | None:intergenic | 35.0% |
| CAAAAAGTTACCACTCCAAT+TGG | + | chr7_1:55449504-55449523 | Msa1025190:CDS | 35.0% | |
| AATCATGGAGAATACCTCAA+AGG | + | chr7_1:55449573-55449592 | Msa1025190:CDS | 35.0% | |
| !!! | GAATTTTCAGGCTGCTTTTA+AGG | + | chr7_1:55449608-55449627 | Msa1025190:CDS | 35.0% |
| AGGGAATTTGGTTGGAAAAA+TGG | + | chr7_1:55449641-55449660 | Msa1025190:CDS | 35.0% | |
| !! | GAATTTTGAGGATGCCAAAA+GGG | + | chr7_1:55449854-55449873 | Msa1025190:CDS | 35.0% |
| ! | TGGTTTGAAATTGAAGGTAG+AGG | + | chr7_1:55449902-55449921 | Msa1025190:CDS | 35.0% |
| GAAATTGAAGGTAGAGGAAA+AGG | + | chr7_1:55449908-55449927 | Msa1025190:CDS | 35.0% | |
| AAAATAATGAACGAAACGGG+TGG | + | chr7_1:55449957-55449976 | Msa1025190:CDS | 35.0% | |
| AATGATAGGTCTTCCACATA+TGG | + | chr7_1:55450007-55450026 | Msa1025190:CDS | 35.0% | |
| ATGATAGGTCTTCCACATAT+GGG | + | chr7_1:55450008-55450027 | Msa1025190:CDS | 35.0% | |
| GAGGATTTGATCAAGAACTA+TGG | + | chr7_1:55450080-55450099 | Msa1025190:CDS | 35.0% | |
| GATCAAGAACTATGGTATCA+AGG | + | chr7_1:55450088-55450107 | Msa1025190:CDS | 35.0% | |
| ! | CTCTTGATTGGTTACAAACA+TGG | + | chr7_1:55450300-55450319 | Msa1025190:CDS | 35.0% |
| AGTGATGGCTATCATCATAA+AGG | + | chr7_1:55450335-55450354 | Msa1025190:CDS | 35.0% | |
| TGTTCCATATGGCATCATCA+TGG | + | chr7_1:55448948-55448967 | Msa1025190:CDS | 40.0% | |
| ! | TCATCCATGATGATGCCATA+TGG | - | chr7_1:55448955-55448974 | None:intergenic | 40.0% |
| CATTAGAGATGGAAGTTCCA+AGG | - | chr7_1:55449094-55449113 | None:intergenic | 40.0% | |
| CTTGGAACTTCCATCTCTAA+TGG | + | chr7_1:55449092-55449111 | Msa1025190:CDS | 40.0% | |
| AACTCCCTTCACTTTCTTCT+TGG | - | chr7_1:55449179-55449198 | None:intergenic | 40.0% | |
| ! | AATTTTCCACATGTCCTCGA+AGG | + | chr7_1:55449210-55449229 | Msa1025190:CDS | 40.0% |
| ! | ATTTTCCACATGTCCTCGAA+GGG | + | chr7_1:55449211-55449230 | Msa1025190:CDS | 40.0% |
| GATTTGAACTATACCCTTCG+AGG | - | chr7_1:55449227-55449246 | None:intergenic | 40.0% | |
| ! | ATTTTACAACTGTCTCCGAG+GGG | - | chr7_1:55449249-55449268 | None:intergenic | 40.0% |
| ! | CATTTTACAACTGTCTCCGA+GGG | - | chr7_1:55449250-55449269 | None:intergenic | 40.0% |
| GAAATGATCATAAGTGGCAC+TGG | - | chr7_1:55449277-55449296 | None:intergenic | 40.0% | |
| AAAATTCTCCCTGTGATGCA+TGG | + | chr7_1:55449304-55449323 | Msa1025190:CDS | 40.0% | |
| !! | TGCTTTTTGTCCTTTCTCCA+AGG | - | chr7_1:55449454-55449473 | None:intergenic | 40.0% |
| GCTCAAGAAGTGACAAATCA+TGG | + | chr7_1:55449558-55449577 | Msa1025190:CDS | 40.0% | |
| ! | CGAGGCATACAAGAATTTTC+AGG | + | chr7_1:55449596-55449615 | Msa1025190:CDS | 40.0% |
| GGTTTGGAAATGGTGTTCAA+TGG | + | chr7_1:55449742-55449761 | Msa1025190:CDS | 40.0% | |
| ! | TGTTCAATGGCCTTTTCTCT+TGG | + | chr7_1:55449755-55449774 | Msa1025190:CDS | 40.0% |
| !! | GGAATTTTGAGGATGCCAAA+AGG | + | chr7_1:55449853-55449872 | Msa1025190:CDS | 40.0% |
| GAAGGTAGAGGAAAAGGAAT+TGG | + | chr7_1:55449914-55449933 | Msa1025190:CDS | 40.0% | |
| ! | GGGTGGAAAGAAAGAGTTTT+TGG | + | chr7_1:55449974-55449993 | Msa1025190:CDS | 40.0% |
| CTTCTAACCATTCCCATATG+TGG | - | chr7_1:55450023-55450042 | None:intergenic | 40.0% | |
| !! | TGCATGTGAAGTGTTGTTTG+TGG | + | chr7_1:55450262-55450281 | Msa1025190:CDS | 40.0% |
| TGGGAAGAGATGAAAAGTGA+TGG | + | chr7_1:55450320-55450339 | Msa1025190:CDS | 40.0% | |
| TGTTCCATATGGCATCATCA+TGG | + | chr7_1:55448948-55448967 | Msa1025190:CDS | 40.0% | |
| ! | TCATCCATGATGATGCCATA+TGG | - | chr7_1:55448955-55448974 | None:intergenic | 40.0% |
| CATTAGAGATGGAAGTTCCA+AGG | - | chr7_1:55449094-55449113 | None:intergenic | 40.0% | |
| CTTGGAACTTCCATCTCTAA+TGG | + | chr7_1:55449092-55449111 | Msa1025190:CDS | 40.0% | |
| AACTCCCTTCACTTTCTTCT+TGG | - | chr7_1:55449179-55449198 | None:intergenic | 40.0% | |
| ! | AATTTTCCACATGTCCTCGA+AGG | + | chr7_1:55449210-55449229 | Msa1025190:CDS | 40.0% |
| ! | ATTTTCCACATGTCCTCGAA+GGG | + | chr7_1:55449211-55449230 | Msa1025190:CDS | 40.0% |
| GATTTGAACTATACCCTTCG+AGG | - | chr7_1:55449227-55449246 | None:intergenic | 40.0% | |
| ! | ATTTTACAACTGTCTCCGAG+GGG | - | chr7_1:55449249-55449268 | None:intergenic | 40.0% |
| ! | CATTTTACAACTGTCTCCGA+GGG | - | chr7_1:55449250-55449269 | None:intergenic | 40.0% |
| GAAATGATCATAAGTGGCAC+TGG | - | chr7_1:55449277-55449296 | None:intergenic | 40.0% | |
| AAAATTCTCCCTGTGATGCA+TGG | + | chr7_1:55449304-55449323 | Msa1025190:CDS | 40.0% | |
| !! | TGCTTTTTGTCCTTTCTCCA+AGG | - | chr7_1:55449454-55449473 | None:intergenic | 40.0% |
| GCTCAAGAAGTGACAAATCA+TGG | + | chr7_1:55449558-55449577 | Msa1025190:CDS | 40.0% | |
| ! | CGAGGCATACAAGAATTTTC+AGG | + | chr7_1:55449596-55449615 | Msa1025190:CDS | 40.0% |
| GGTTTGGAAATGGTGTTCAA+TGG | + | chr7_1:55449742-55449761 | Msa1025190:CDS | 40.0% | |
| ! | TGTTCAATGGCCTTTTCTCT+TGG | + | chr7_1:55449755-55449774 | Msa1025190:CDS | 40.0% |
| !! | GGAATTTTGAGGATGCCAAA+AGG | + | chr7_1:55449853-55449872 | Msa1025190:CDS | 40.0% |
| GAAGGTAGAGGAAAAGGAAT+TGG | + | chr7_1:55449914-55449933 | Msa1025190:CDS | 40.0% | |
| ! | GGGTGGAAAGAAAGAGTTTT+TGG | + | chr7_1:55449974-55449993 | Msa1025190:CDS | 40.0% |
| CTTCTAACCATTCCCATATG+TGG | - | chr7_1:55450023-55450042 | None:intergenic | 40.0% | |
| !! | TGCATGTGAAGTGTTGTTTG+TGG | + | chr7_1:55450262-55450281 | Msa1025190:CDS | 40.0% |
| TGGGAAGAGATGAAAAGTGA+TGG | + | chr7_1:55450320-55450339 | Msa1025190:CDS | 40.0% | |
| GGGTATAGTTCAAATCCCCT+CGG | + | chr7_1:55449231-55449250 | Msa1025190:CDS | 45.0% | |
| ! | CCATTTTACAACTGTCTCCG+AGG | - | chr7_1:55449251-55449270 | None:intergenic | 45.0% |
| CCTCGGAGACAGTTGTAAAA+TGG | + | chr7_1:55449248-55449267 | Msa1025190:CDS | 45.0% | |
| ! | ATGATCATAAGTGGCACTGG+CGG | - | chr7_1:55449274-55449293 | None:intergenic | 45.0% |
| TCAAGTGTGGAAGACTCACT+TGG | - | chr7_1:55449413-55449432 | None:intergenic | 45.0% | |
| AGTGAGTCTTCCACACTTGA+TGG | + | chr7_1:55449413-55449432 | Msa1025190:CDS | 45.0% | |
| AAGAGAGTCACCAATTGGAG+TGG | - | chr7_1:55449517-55449536 | None:intergenic | 45.0% | |
| GTCTCAAGAGAGTCACCAAT+TGG | - | chr7_1:55449522-55449541 | None:intergenic | 45.0% | |
| ! | TCAATGGCCTTTTCTCTTGG+AGG | + | chr7_1:55449758-55449777 | Msa1025190:CDS | 45.0% |
| GAAACAGCCTCCAAGAGAAA+AGG | - | chr7_1:55449768-55449787 | None:intergenic | 45.0% | |
| AGGTCTTCCACATATGGGAA+TGG | + | chr7_1:55450013-55450032 | Msa1025190:CDS | 45.0% | |
| !! | TGAGTTTTTGAAGGTAGCCG+AGG | + | chr7_1:55450061-55450080 | Msa1025190:CDS | 45.0% |
| GGGTATAGTTCAAATCCCCT+CGG | + | chr7_1:55449231-55449250 | Msa1025190:CDS | 45.0% | |
| ! | CCATTTTACAACTGTCTCCG+AGG | - | chr7_1:55449251-55449270 | None:intergenic | 45.0% |
| CCTCGGAGACAGTTGTAAAA+TGG | + | chr7_1:55449248-55449267 | Msa1025190:CDS | 45.0% | |
| ! | ATGATCATAAGTGGCACTGG+CGG | - | chr7_1:55449274-55449293 | None:intergenic | 45.0% |
| TCAAGTGTGGAAGACTCACT+TGG | - | chr7_1:55449413-55449432 | None:intergenic | 45.0% | |
| AGTGAGTCTTCCACACTTGA+TGG | + | chr7_1:55449413-55449432 | Msa1025190:CDS | 45.0% | |
| AAGAGAGTCACCAATTGGAG+TGG | - | chr7_1:55449517-55449536 | None:intergenic | 45.0% | |
| GTCTCAAGAGAGTCACCAAT+TGG | - | chr7_1:55449522-55449541 | None:intergenic | 45.0% | |
| ! | TCAATGGCCTTTTCTCTTGG+AGG | + | chr7_1:55449758-55449777 | Msa1025190:CDS | 45.0% |
| GAAACAGCCTCCAAGAGAAA+AGG | - | chr7_1:55449768-55449787 | None:intergenic | 45.0% | |
| AGGTCTTCCACATATGGGAA+TGG | + | chr7_1:55450013-55450032 | Msa1025190:CDS | 45.0% | |
| !! | TGAGTTTTTGAAGGTAGCCG+AGG | + | chr7_1:55450061-55450080 | Msa1025190:CDS | 45.0% |
| CTATACCCTTCGAGGACATG+TGG | - | chr7_1:55449219-55449238 | None:intergenic | 50.0% | |
| GTTGGACTCCATGCATCACA+GGG | - | chr7_1:55449315-55449334 | None:intergenic | 50.0% | |
| TGTTGGACTCCATGCATCAC+AGG | - | chr7_1:55449316-55449335 | None:intergenic | 50.0% | |
| CCATGTGCTTCCATCAAGTG+TGG | - | chr7_1:55449426-55449445 | None:intergenic | 50.0% | |
| ! | CCACACTTGATGGAAGCACA+TGG | + | chr7_1:55449423-55449442 | Msa1025190:CDS | 50.0% |
| CATGGTGAAGCCTTGGAGAA+AGG | + | chr7_1:55449441-55449460 | Msa1025190:CDS | 50.0% | |
| TGGAGAATACCTCAAAGGCG+AGG | + | chr7_1:55449578-55449597 | Msa1025190:CDS | 50.0% | |
| TCTTGTATGCCTCGCCTTTG+AGG | - | chr7_1:55449590-55449609 | None:intergenic | 50.0% | |
| CTATACCCTTCGAGGACATG+TGG | - | chr7_1:55449219-55449238 | None:intergenic | 50.0% | |
| GTTGGACTCCATGCATCACA+GGG | - | chr7_1:55449315-55449334 | None:intergenic | 50.0% | |
| TGTTGGACTCCATGCATCAC+AGG | - | chr7_1:55449316-55449335 | None:intergenic | 50.0% | |
| CCATGTGCTTCCATCAAGTG+TGG | - | chr7_1:55449426-55449445 | None:intergenic | 50.0% | |
| ! | CCACACTTGATGGAAGCACA+TGG | + | chr7_1:55449423-55449442 | Msa1025190:CDS | 50.0% |
| CATGGTGAAGCCTTGGAGAA+AGG | + | chr7_1:55449441-55449460 | Msa1025190:CDS | 50.0% | |
| TGGAGAATACCTCAAAGGCG+AGG | + | chr7_1:55449578-55449597 | Msa1025190:CDS | 50.0% | |
| TCTTGTATGCCTCGCCTTTG+AGG | - | chr7_1:55449590-55449609 | None:intergenic | 50.0% | |
| ! | GGAAGCACATGGTGAAGCCT+TGG | + | chr7_1:55449434-55449453 | Msa1025190:CDS | 55.0% |
| ! | GGAAGCACATGGTGAAGCCT+TGG | + | chr7_1:55449434-55449453 | Msa1025190:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 55448922 | 55450370 | 55448922 | ID=Msa1025190;Name=Msa1025190 |
| chr7_1 | mRNA | 55448922 | 55450370 | 55448922 | ID=Msa1025190-mRNA-1;Parent=Msa1025190;Name=Msa1025190-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|-1|0|1|-1|1|1|0|482 |
| chr7_1 | exon | 55448922 | 55450370 | 55448922 | ID=Msa1025190-mRNA-1:exon:11087;Parent=Msa1025190-mRNA-1 |
| chr7_1 | CDS | 55448922 | 55450370 | 55448922 | ID=Msa1025190-mRNA-1:cds;Parent=Msa1025190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
