Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1027190 | XP_003623743.1 | 97.436 | 195 | 4 | 1 | 1 | 195 | 1 | 194 | 5.61e-137 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1027190 | sp|O22132|LBD19_ARATH | 71.429 | 119 | 31 | 3 | 15 | 132 | 19 | 135 | 5.06e-52 | 168 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1027190 | G7L0B7 | 97.436 | 195 | 4 | 1 | 1 | 195 | 1 | 194 | 2.68e-137 | 391 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1027190 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1027190 | MtrunA17_Chr7g0245861 | 99.010 | 101 | 1 | 0 | 1 | 101 | 1 | 101 | 4.19e-71 | 212 |
| Msa1027190 | MtrunA17_Chr8g0351721 | 62.051 | 195 | 62 | 6 | 4 | 194 | 10 | 196 | 7.82e-68 | 206 |
| Msa1027190 | MtrunA17_Chr8g0351701 | 72.642 | 106 | 27 | 2 | 11 | 116 | 22 | 125 | 3.91e-52 | 167 |
| Msa1027190 | MtrunA17_Chr7g0245871 | 67.619 | 105 | 32 | 2 | 12 | 116 | 27 | 129 | 3.89e-46 | 152 |
| Msa1027190 | MtrunA17_Chr7g0261031 | 65.546 | 119 | 36 | 4 | 10 | 125 | 6 | 122 | 1.40e-45 | 150 |
| Msa1027190 | MtrunA17_Chr1g0184271 | 54.225 | 142 | 60 | 4 | 12 | 151 | 12 | 150 | 5.53e-45 | 149 |
| Msa1027190 | MtrunA17_Chr7g0260971 | 65.487 | 113 | 37 | 2 | 4 | 116 | 6 | 116 | 2.11e-44 | 147 |
| Msa1027190 | MtrunA17_Chr1g0184281 | 58.065 | 124 | 50 | 2 | 10 | 133 | 13 | 134 | 8.24e-42 | 140 |
| Msa1027190 | MtrunA17_Chr6g0460951 | 62.385 | 109 | 37 | 3 | 12 | 120 | 40 | 144 | 8.31e-40 | 135 |
| Msa1027190 | MtrunA17_Chr5g0435641 | 61.616 | 99 | 36 | 2 | 10 | 108 | 5 | 101 | 2.14e-39 | 133 |
| Msa1027190 | MtrunA17_Chr5g0437571 | 46.386 | 166 | 76 | 5 | 9 | 164 | 3 | 165 | 3.09e-37 | 127 |
| Msa1027190 | MtrunA17_Chr3g0114061 | 42.857 | 161 | 78 | 3 | 6 | 155 | 2 | 159 | 3.07e-35 | 121 |
| Msa1027190 | MtrunA17_Chr2g0311601 | 53.509 | 114 | 44 | 3 | 8 | 115 | 3 | 113 | 9.28e-34 | 117 |
| Msa1027190 | MtrunA17_Chr7g0227511 | 53.043 | 115 | 51 | 2 | 12 | 126 | 11 | 122 | 6.67e-33 | 116 |
| Msa1027190 | MtrunA17_Chr3g0106101 | 51.402 | 107 | 49 | 2 | 9 | 115 | 4 | 107 | 3.50e-32 | 114 |
| Msa1027190 | MtrunA17_Chr4g0058651 | 58.586 | 99 | 38 | 2 | 10 | 108 | 9 | 104 | 1.03e-31 | 113 |
| Msa1027190 | MtrunA17_Chr3g0117121 | 55.660 | 106 | 44 | 2 | 10 | 115 | 8 | 110 | 2.60e-31 | 112 |
| Msa1027190 | MtrunA17_Chr6g0449641 | 53.704 | 108 | 47 | 2 | 12 | 119 | 9 | 113 | 3.12e-31 | 110 |
| Msa1027190 | MtrunA17_Chr4g0043421 | 54.902 | 102 | 43 | 2 | 12 | 113 | 15 | 113 | 4.43e-31 | 111 |
| Msa1027190 | MtrunA17_Chr4g0030001 | 42.958 | 142 | 67 | 3 | 11 | 141 | 23 | 161 | 5.95e-31 | 111 |
| Msa1027190 | MtrunA17_Chr5g0437401 | 51.923 | 104 | 47 | 2 | 13 | 116 | 12 | 112 | 1.84e-30 | 110 |
| Msa1027190 | MtrunA17_Chr5g0438091 | 43.038 | 158 | 78 | 5 | 12 | 162 | 39 | 191 | 3.00e-29 | 107 |
| Msa1027190 | MtrunA17_Chr3g0097221 | 52.778 | 108 | 48 | 2 | 12 | 119 | 7 | 111 | 1.27e-28 | 108 |
| Msa1027190 | MtrunA17_Chr6g0449651 | 50.943 | 106 | 49 | 2 | 10 | 115 | 65 | 167 | 7.54e-28 | 103 |
| Msa1027190 | MtrunA17_Chr3g0113891 | 50.000 | 100 | 47 | 2 | 13 | 112 | 15 | 111 | 1.47e-27 | 102 |
| Msa1027190 | MtrunA17_Chr3g0115431 | 50.926 | 108 | 50 | 2 | 9 | 116 | 6 | 110 | 1.54e-27 | 103 |
| Msa1027190 | MtrunA17_Chr5g0402611 | 52.381 | 105 | 47 | 2 | 12 | 116 | 8 | 109 | 2.74e-27 | 105 |
| Msa1027190 | MtrunA17_Chr1g0200201 | 50.485 | 103 | 48 | 2 | 13 | 115 | 73 | 172 | 8.36e-27 | 102 |
| Msa1027190 | MtrunA17_Chr3g0129071 | 50.962 | 104 | 48 | 2 | 12 | 115 | 47 | 147 | 1.06e-26 | 102 |
| Msa1027190 | MtrunA17_Chr6g0460941 | 55.556 | 90 | 38 | 2 | 12 | 101 | 7 | 94 | 1.82e-26 | 97.1 |
| Msa1027190 | MtrunA17_Chr5g0432451 | 53.846 | 104 | 45 | 2 | 12 | 115 | 43 | 143 | 5.68e-23 | 92.0 |
| Msa1027190 | MtrunA17_Chr5g0444351 | 42.453 | 106 | 58 | 2 | 11 | 116 | 4 | 106 | 1.67e-22 | 88.6 |
| Msa1027190 | MtrunA17_Chr8g0353981 | 49.550 | 111 | 53 | 2 | 12 | 122 | 7 | 114 | 1.04e-21 | 88.6 |
| Msa1027190 | MtrunA17_Chr7g0225111 | 38.462 | 104 | 61 | 2 | 13 | 116 | 6 | 106 | 3.11e-20 | 81.6 |
| Msa1027190 | MtrunA17_Chr8g0374601 | 39.048 | 105 | 61 | 2 | 12 | 116 | 26 | 127 | 2.05e-17 | 78.2 |
| Msa1027190 | MtrunA17_Chr8g0374591 | 40.952 | 105 | 59 | 2 | 12 | 116 | 8 | 109 | 7.91e-17 | 73.2 |
| Msa1027190 | MtrunA17_Chr8g0342351 | 37.736 | 106 | 63 | 2 | 13 | 118 | 13 | 115 | 1.09e-15 | 73.2 |
| Msa1027190 | MtrunA17_Chr2g0330201 | 37.143 | 105 | 63 | 2 | 13 | 117 | 20 | 121 | 1.19e-15 | 73.6 |
| Msa1027190 | MtrunA17_Chr6g0452691 | 39.623 | 106 | 60 | 3 | 13 | 117 | 10 | 112 | 2.80e-15 | 70.5 |
| Msa1027190 | MtrunA17_Chr8g0374581 | 36.538 | 104 | 64 | 1 | 12 | 115 | 8 | 109 | 7.01e-15 | 70.5 |
| Msa1027190 | MtrunA17_Chr4g0040831 | 40.625 | 96 | 54 | 2 | 13 | 108 | 16 | 108 | 9.45e-15 | 69.7 |
| Msa1027190 | MtrunA17_Chr4g0059901 | 37.143 | 105 | 63 | 2 | 13 | 117 | 11 | 112 | 1.46e-14 | 70.1 |
| Msa1027190 | MtrunA17_Chr6g0452671 | 33.929 | 112 | 70 | 3 | 1 | 112 | 1 | 108 | 1.81e-13 | 66.2 |
| Msa1027190 | MtrunA17_Chr6g0452661 | 34.906 | 106 | 58 | 5 | 13 | 110 | 10 | 112 | 2.14e-12 | 63.9 |
| Msa1027190 | MtrunA17_Chr2g0326051 | 51.786 | 56 | 27 | 0 | 60 | 115 | 5 | 60 | 1.45e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1027190 | AT2G45410.1 | 71.429 | 119 | 31 | 3 | 15 | 132 | 19 | 135 | 5.14e-53 | 168 |
| Msa1027190 | AT4G00210.1 | 63.971 | 136 | 43 | 3 | 10 | 141 | 9 | 142 | 2.40e-52 | 167 |
| Msa1027190 | AT2G45420.1 | 75.238 | 105 | 24 | 2 | 15 | 119 | 40 | 142 | 1.54e-48 | 159 |
| Msa1027190 | AT4G00220.1 | 69.524 | 105 | 30 | 2 | 15 | 119 | 20 | 122 | 1.08e-45 | 150 |
| Msa1027190 | AT3G03760.1 | 68.468 | 111 | 32 | 3 | 12 | 122 | 51 | 158 | 5.78e-45 | 150 |
| Msa1027190 | AT3G58190.1 | 57.851 | 121 | 49 | 2 | 12 | 132 | 11 | 129 | 7.93e-45 | 148 |
| Msa1027190 | AT2G42430.1 | 56.934 | 137 | 48 | 4 | 10 | 137 | 13 | 147 | 4.44e-44 | 147 |
| Msa1027190 | AT2G42440.1 | 55.200 | 125 | 49 | 3 | 10 | 129 | 5 | 127 | 1.12e-42 | 143 |
| Msa1027190 | AT5G06080.1 | 48.026 | 152 | 64 | 4 | 10 | 151 | 5 | 151 | 1.08e-40 | 136 |
| Msa1027190 | AT2G31310.1 | 58.879 | 107 | 42 | 2 | 10 | 116 | 5 | 109 | 1.70e-39 | 134 |
| Msa1027190 | AT2G30130.1 | 50.407 | 123 | 57 | 3 | 6 | 128 | 2 | 120 | 1.32e-33 | 119 |
| Msa1027190 | AT5G63090.4 | 57.143 | 105 | 42 | 2 | 12 | 116 | 11 | 112 | 2.22e-31 | 112 |
| Msa1027190 | AT5G63090.3 | 57.143 | 105 | 42 | 2 | 12 | 116 | 11 | 112 | 2.22e-31 | 112 |
| Msa1027190 | AT5G63090.2 | 57.143 | 105 | 42 | 2 | 12 | 116 | 11 | 112 | 2.22e-31 | 112 |
| Msa1027190 | AT5G63090.1 | 57.143 | 105 | 42 | 2 | 12 | 116 | 11 | 112 | 2.22e-31 | 112 |
| Msa1027190 | AT1G16530.1 | 49.153 | 118 | 55 | 2 | 11 | 125 | 13 | 128 | 2.62e-31 | 112 |
| Msa1027190 | AT3G27650.1 | 53.846 | 104 | 45 | 2 | 12 | 115 | 39 | 139 | 3.15e-30 | 109 |
| Msa1027190 | AT1G07900.1 | 40.741 | 162 | 82 | 5 | 11 | 164 | 32 | 187 | 1.66e-29 | 108 |
| Msa1027190 | AT3G11090.1 | 41.290 | 155 | 83 | 5 | 13 | 163 | 12 | 162 | 1.99e-29 | 107 |
| Msa1027190 | AT2G28500.1 | 50.962 | 104 | 48 | 2 | 12 | 115 | 55 | 155 | 9.45e-29 | 107 |
| Msa1027190 | AT5G66870.1 | 49.635 | 137 | 54 | 5 | 12 | 136 | 7 | 140 | 7.24e-28 | 107 |
| Msa1027190 | AT1G31320.1 | 53.333 | 90 | 39 | 2 | 12 | 101 | 13 | 99 | 1.03e-27 | 103 |
| Msa1027190 | AT3G26660.1 | 44.762 | 105 | 55 | 2 | 13 | 117 | 6 | 107 | 2.69e-27 | 100 |
| Msa1027190 | AT3G26620.1 | 44.762 | 105 | 55 | 2 | 13 | 117 | 6 | 107 | 4.92e-27 | 99.8 |
| Msa1027190 | AT2G23660.2 | 47.115 | 104 | 52 | 2 | 12 | 115 | 5 | 105 | 4.60e-25 | 99.4 |
| Msa1027190 | AT2G23660.3 | 47.115 | 104 | 52 | 2 | 12 | 115 | 5 | 105 | 4.60e-25 | 99.4 |
| Msa1027190 | AT2G23660.1 | 47.115 | 104 | 52 | 2 | 12 | 115 | 5 | 105 | 4.60e-25 | 99.4 |
| Msa1027190 | AT2G30340.1 | 48.077 | 104 | 51 | 2 | 12 | 115 | 52 | 152 | 1.08e-24 | 97.8 |
| Msa1027190 | AT2G30340.2 | 48.077 | 104 | 51 | 2 | 12 | 115 | 53 | 153 | 1.29e-24 | 97.4 |
| Msa1027190 | AT3G50510.1 | 43.636 | 110 | 59 | 2 | 7 | 116 | 7 | 113 | 4.89e-23 | 91.7 |
| Msa1027190 | AT3G50510.2 | 43.636 | 110 | 59 | 2 | 7 | 116 | 7 | 113 | 4.89e-23 | 91.7 |
| Msa1027190 | AT2G40470.2 | 52.885 | 104 | 46 | 2 | 12 | 115 | 20 | 120 | 6.17e-22 | 89.0 |
| Msa1027190 | AT2G40470.1 | 52.885 | 104 | 46 | 2 | 12 | 115 | 45 | 145 | 6.34e-22 | 89.4 |
| Msa1027190 | AT1G65620.1 | 52.381 | 105 | 47 | 2 | 12 | 116 | 9 | 110 | 8.03e-22 | 88.6 |
| Msa1027190 | AT1G65620.4 | 52.381 | 105 | 47 | 2 | 12 | 116 | 9 | 110 | 8.03e-22 | 88.6 |
| Msa1027190 | AT1G65620.3 | 52.381 | 105 | 47 | 2 | 12 | 116 | 9 | 110 | 8.03e-22 | 88.6 |
| Msa1027190 | AT1G65620.5 | 52.381 | 105 | 47 | 2 | 12 | 116 | 9 | 110 | 8.03e-22 | 88.6 |
| Msa1027190 | AT1G65620.2 | 52.381 | 105 | 47 | 2 | 12 | 116 | 9 | 110 | 8.03e-22 | 88.6 |
| Msa1027190 | AT1G72980.1 | 35.772 | 123 | 74 | 3 | 9 | 129 | 8 | 127 | 1.85e-15 | 72.0 |
| Msa1027190 | AT5G35900.1 | 33.043 | 115 | 74 | 2 | 13 | 127 | 6 | 117 | 4.15e-15 | 70.9 |
| Msa1027190 | AT3G13850.1 | 33.898 | 118 | 75 | 2 | 13 | 130 | 37 | 151 | 6.52e-15 | 71.2 |
| Msa1027190 | AT3G47870.1 | 29.907 | 107 | 72 | 2 | 11 | 117 | 35 | 138 | 2.58e-12 | 64.7 |
| Msa1027190 | AT1G06280.1 | 41.558 | 77 | 42 | 2 | 13 | 89 | 25 | 98 | 2.67e-12 | 63.2 |
Find 37 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGAGAGAGAGATGGATTT+GGG | 0.204949 | 7_1:-59488261 | None:intergenic |
| AGGGCTACTGACCCTGTTTA+TGG | 0.239262 | 7_1:-59488006 | Msa1027190:CDS |
| TTTAGAGAGAGAGATGGATT+TGG | 0.290229 | 7_1:-59488262 | None:intergenic |
| AAGGCAAAGCTTGGAATTCC+TGG | 0.322902 | 7_1:+59485246 | None:intergenic |
| GGGTGTGGGGATGACGGTGG+TGG | 0.353668 | 7_1:-59488240 | Msa1027190:CDS |
| AGAGAGATGGATTTGGGGTG+TGG | 0.373011 | 7_1:-59488255 | None:intergenic |
| GTCATGAAGTTGTTGATTAT+AGG | 0.378812 | 7_1:+59485268 | None:intergenic |
| TGACCTGATGACTCAAAATA+TGG | 0.381006 | 7_1:+59488156 | None:intergenic |
| CTTTGAGGCTGTTGAAATTG+AGG | 0.406522 | 7_1:+59485437 | None:intergenic |
| TGAGCAACACAACCATAAAC+AGG | 0.407283 | 7_1:+59487994 | None:intergenic |
| GAGAGATGGATTTGGGGTGT+GGG | 0.427932 | 7_1:-59488254 | None:intergenic |
| GCTGCAGTTCATAAGGTGTT+TGG | 0.429613 | 7_1:-59488117 | Msa1027190:CDS |
| TTGGGGTGTGGGGATGACGG+TGG | 0.437721 | 7_1:-59488243 | Msa1027190:CDS |
| CCTCTTTGCTCTTCAACAAC+AGG | 0.440953 | 7_1:-59487971 | Msa1027190:intron |
| GCATCAAGACGCTTATGAAC+TGG | 0.441293 | 7_1:+59488060 | None:intergenic |
| GATTTGGGGTGTGGGGATGA+CGG | 0.456260 | 7_1:-59488246 | Msa1027190:CDS |
| AAAATTCTCAAGGCAAAGCT+TGG | 0.480367 | 7_1:+59485237 | None:intergenic |
| TGATTATAGGAATAGTATGA+TGG | 0.495256 | 7_1:+59485281 | None:intergenic |
| TCTGCTATGAGGCTCTTGCT+AGG | 0.495453 | 7_1:-59488026 | Msa1027190:CDS |
| CTGCTATGAGGCTCTTGCTA+GGG | 0.502068 | 7_1:-59488025 | Msa1027190:CDS |
| GCGATTCAATATTGAAAGAC+GGG | 0.503238 | 7_1:+59485472 | None:intergenic |
| AGTAAGGATGAATGCAAAGT+TGG | 0.505000 | 7_1:+59485401 | None:intergenic |
| TCTTACATGTCCATGCACTT+TGG | 0.510678 | 7_1:-59485350 | Msa1027190:CDS |
| GGTGTGGGGATGACGGTGGT+GGG | 0.515639 | 7_1:-59488239 | Msa1027190:CDS |
| TGAAAGACGGGCTTGTACAT+AGG | 0.516839 | 7_1:+59485484 | None:intergenic |
| TGTTGTTACTCTCTGCTATG+AGG | 0.534536 | 7_1:-59488037 | Msa1027190:CDS |
| TAGAGAGAGAGATGGATTTG+GGG | 0.538982 | 7_1:-59488260 | None:intergenic |
| AGAGATGGATTTGGGGTGTG+GGG | 0.541784 | 7_1:-59488253 | None:intergenic |
| GGTGATATTGAAGAGCTTTG+AGG | 0.552521 | 7_1:+59485422 | None:intergenic |
| TTGAGAAGAAAGTGTGTGAA+AGG | 0.553888 | 7_1:-59488195 | Msa1027190:CDS |
| TGATGACAAATGATGAAGTA+AGG | 0.555832 | 7_1:+59485385 | None:intergenic |
| GATGACGGTGGTGGGCCTTG+TGG | 0.575954 | 7_1:-59488231 | Msa1027190:CDS |
| TGCGATTCAATATTGAAAGA+CGG | 0.576843 | 7_1:+59485471 | None:intergenic |
| AAGAGGATGACCAAAGTGCA+TGG | 0.603188 | 7_1:+59485340 | None:intergenic |
| TAATCAACAACTTCATGACC+AGG | 0.619495 | 7_1:-59485264 | Msa1027190:CDS |
| CCTGTTGTTGAAGAGCAAAG+AGG | 0.642330 | 7_1:+59487971 | None:intergenic |
| GAGCAACACAACCATAAACA+GGG | 0.707824 | 7_1:+59487995 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATTTTGGAAAATAAAT+AGG | + | chr7_1:59485868-59485887 | None:intergenic | 10.0% |
| !!! | AAATAGGATTTATATTATTT+TGG | + | chr7_1:59485880-59485899 | None:intergenic | 10.0% |
| !! | AAAAAATGACATATATAAAT+AGG | + | chr7_1:59485896-59485915 | None:intergenic | 10.0% |
| !!! | ATTTTATCAATAATATTCTT+TGG | - | chr7_1:59485926-59485945 | Msa1027190:intron | 10.0% |
| !! | ATAAAAATAGGAATTATAAT+AGG | + | chr7_1:59486745-59486764 | None:intergenic | 10.0% |
| !!! | TATTATAATTCCTATTTTTA+TGG | - | chr7_1:59486744-59486763 | Msa1027190:intron | 10.0% |
| !!! | ATTTTGATATCAATAATTTA+GGG | + | chr7_1:59487552-59487571 | None:intergenic | 10.0% |
| !!! | TATTTTGATATCAATAATTT+AGG | + | chr7_1:59487553-59487572 | None:intergenic | 10.0% |
| !! | TATAATTGTATTTAAACTAT+GGG | + | chr7_1:59487947-59487966 | None:intergenic | 10.0% |
| !! | ATATAATTGTATTTAAACTA+TGG | + | chr7_1:59487948-59487967 | None:intergenic | 10.0% |
| !! | TATATATATACGAATTAGTT+AGG | + | chr7_1:59485622-59485641 | None:intergenic | 15.0% |
| !! | TAATTCGTATATATATAACT+TGG | - | chr7_1:59485625-59485644 | Msa1027190:intron | 15.0% |
| !! | ATTCAAGAAAAACTTATAAT+AGG | - | chr7_1:59485745-59485764 | Msa1027190:intron | 15.0% |
| !! | TAAATAGGATTTATATTGTT+TGG | + | chr7_1:59485853-59485872 | None:intergenic | 15.0% |
| !!! | CTTTTTTTTTTCTTTTTTTC+TGG | + | chr7_1:59486059-59486078 | None:intergenic | 15.0% |
| !! | CAGAAAAAAAGAAAAAAAAA+AGG | - | chr7_1:59486057-59486076 | Msa1027190:intron | 15.0% |
| !!! | ATGCAATGTAAAATAAATTT+TGG | + | chr7_1:59486288-59486307 | None:intergenic | 15.0% |
| !! | TAAATGAATAAATGATCAAT+AGG | + | chr7_1:59487706-59487725 | None:intergenic | 15.0% |
| !! | TGATCATTTATTCATTTATA+TGG | - | chr7_1:59487708-59487727 | Msa1027190:intron | 15.0% |
| !! | TTATTCATTTATATGGTATA+TGG | - | chr7_1:59487715-59487734 | Msa1027190:intron | 15.0% |
| !! | TATTCATTTATATGGTATAT+GGG | - | chr7_1:59487716-59487735 | Msa1027190:intron | 15.0% |
| !! | TATAGATAACTAATAGTTTA+AGG | - | chr7_1:59487743-59487762 | Msa1027190:intron | 15.0% |
| !! | ATAGATAACTAATAGTTTAA+GGG | - | chr7_1:59487744-59487763 | Msa1027190:intron | 15.0% |
| !! | TTATATACTTGATTAATTAC+AGG | - | chr7_1:59487962-59487981 | Msa1027190:intron | 15.0% |
| !! | AGAAGAATGGTTTAATAAAT+TGG | - | chr7_1:59485950-59485969 | Msa1027190:intron | 20.0% |
| !!! | TATATTGCTTTAATTTGTTC+AGG | + | chr7_1:59486164-59486183 | None:intergenic | 20.0% |
| !!! | TCAAAGGCATAATATAATTA+AGG | - | chr7_1:59486436-59486455 | Msa1027190:intron | 20.0% |
| !!! | AGTTTACTAAATTTTATTCC+CGG | - | chr7_1:59486626-59486645 | Msa1027190:intron | 20.0% |
| !! | AAAAAATTTCCCAAAGAAAA+GGG | - | chr7_1:59486672-59486691 | Msa1027190:intron | 20.0% |
| !! | TAAGTCACACAAAAAAAAAA+GGG | - | chr7_1:59486923-59486942 | Msa1027190:intron | 20.0% |
| !! | AAATGTTAATAGTACCTTTA+GGG | - | chr7_1:59486946-59486965 | Msa1027190:intron | 20.0% |
| !!! | TGACTTACATAATGTTATTT+GGG | + | chr7_1:59487079-59487098 | None:intergenic | 20.0% |
| !! | ATGACTTACATAATGTTATT+TGG | + | chr7_1:59487080-59487099 | None:intergenic | 20.0% |
| !! | TGTATAAATACAACTATGTT+AGG | + | chr7_1:59487301-59487320 | None:intergenic | 20.0% |
| !! | TTTCTAATTCACAAAAGATA+AGG | + | chr7_1:59487371-59487390 | None:intergenic | 20.0% |
| !! | TAATACATTACACAACAATA+TGG | - | chr7_1:59487615-59487634 | Msa1027190:intron | 20.0% |
| !! | AATACATTACACAACAATAT+GGG | - | chr7_1:59487616-59487635 | Msa1027190:intron | 20.0% |
| !! | AATAAATGATCAATAGGTTA+GGG | + | chr7_1:59487700-59487719 | None:intergenic | 20.0% |
| !!! | AAGAAAATGTTTCCATTTTT+GGG | + | chr7_1:59487806-59487825 | None:intergenic | 20.0% |
| !!! | TAAGAAAATGTTTCCATTTT+TGG | + | chr7_1:59487807-59487826 | None:intergenic | 20.0% |
| ! | AATATTCTTTGGTAGAAGAA+TGG | - | chr7_1:59485937-59485956 | Msa1027190:intron | 25.0% |
| ! | TCTAAAGAAAATTACCAGTT+AGG | + | chr7_1:59486026-59486045 | None:intergenic | 25.0% |
| ! | AGAAGAAAGATCATATTCAT+AGG | - | chr7_1:59486102-59486121 | Msa1027190:intron | 25.0% |
| ! | GAAGAAAGATCATATTCATA+GGG | - | chr7_1:59486103-59486122 | Msa1027190:intron | 25.0% |
| ! | AAGTTATATTTGTAGATTCC+TGG | - | chr7_1:59486563-59486582 | Msa1027190:intron | 25.0% |
| ! | AGTTATATTTGTAGATTCCT+GGG | - | chr7_1:59486564-59486583 | Msa1027190:intron | 25.0% |
| !! | GTTTACTAAATTTTATTCCC+GGG | - | chr7_1:59486627-59486646 | Msa1027190:intron | 25.0% |
| ! | GAAAAAATTTCCCAAAGAAA+AGG | - | chr7_1:59486671-59486690 | Msa1027190:intron | 25.0% |
| ! | TTTAACGCTATAATATTCCT+GGG | + | chr7_1:59486772-59486791 | None:intergenic | 25.0% |
| !!! | CATCTTTTTTCTAAATACCT+TGG | - | chr7_1:59486796-59486815 | Msa1027190:intron | 25.0% |
| !! | AAGATGAGAATTTTATTCCA+AGG | + | chr7_1:59486816-59486835 | None:intergenic | 25.0% |
| ! | ATTATTCCTAGGAATGAATT+TGG | - | chr7_1:59486851-59486870 | Msa1027190:intron | 25.0% |
| ! | GTAAGTCACACAAAAAAAAA+AGG | - | chr7_1:59486922-59486941 | Msa1027190:intron | 25.0% |
| ! | GAAATGTTAATAGTACCTTT+AGG | - | chr7_1:59486945-59486964 | Msa1027190:intron | 25.0% |
| ! | AATTTGTACATTCAAAGCAT+TGG | - | chr7_1:59487006-59487025 | Msa1027190:intron | 25.0% |
| ! | ATTTCACTTGATTAAAGAGT+GGG | + | chr7_1:59487187-59487206 | None:intergenic | 25.0% |
| !!! | TGCTTTTGATACTTTAAAGA+TGG | - | chr7_1:59487212-59487231 | Msa1027190:intron | 25.0% |
| ! | ACAAAAGATAAGGTAACAAA+CGG | + | chr7_1:59487361-59487380 | None:intergenic | 25.0% |
| ! | ATACATTACACAACAATATG+GGG | - | chr7_1:59487617-59487636 | Msa1027190:intron | 25.0% |
| !! | AGTGTTTAGGATAATAATGA+TGG | + | chr7_1:59487655-59487674 | None:intergenic | 25.0% |
| ! | GAATAAATGATCAATAGGTT+AGG | + | chr7_1:59487701-59487720 | None:intergenic | 25.0% |
| ! | TTGCTTAATATGTGTCATAA+GGG | + | chr7_1:59487783-59487802 | None:intergenic | 25.0% |
| !!! | TGATATTGATCATTTTGAAG+AGG | + | chr7_1:59488173-59488192 | None:intergenic | 25.0% |
| !!! | TAGTATGATGGATTTTCAAA+AGG | + | chr7_1:59488203-59488222 | None:intergenic | 25.0% |
| ! | TGATTATAGGAATAGTATGA+TGG | + | chr7_1:59488215-59488234 | None:intergenic | 25.0% |
| GGCAGAAAAAATGAAAACTA+AGG | + | chr7_1:59485601-59485620 | None:intergenic | 30.0% | |
| !! | TAACTTGGTGCTTTAAAAAC+TGG | - | chr7_1:59485640-59485659 | Msa1027190:intron | 30.0% |
| AATGTATATTCTCAAGGTGT+TGG | - | chr7_1:59485781-59485800 | Msa1027190:intron | 30.0% | |
| CCACTAAAAGGAAACTAATA+AGG | + | chr7_1:59485820-59485839 | None:intergenic | 30.0% | |
| !! | CCTTATTAGTTTCCTTTTAG+TGG | - | chr7_1:59485817-59485836 | Msa1027190:intron | 30.0% |
| ATGCAAATAAGTATCCTAAC+TGG | - | chr7_1:59486009-59486028 | Msa1027190:intron | 30.0% | |
| !!! | TGTGTACTTTTCTAAAGTAG+TGG | - | chr7_1:59486220-59486239 | Msa1027190:intron | 30.0% |
| TTGTATTGAGTATGTTCTGT+TGG | - | chr7_1:59486312-59486331 | Msa1027190:intron | 30.0% | |
| TGTATTGAGTATGTTCTGTT+GGG | - | chr7_1:59486313-59486332 | Msa1027190:intron | 30.0% | |
| ATGTTTGATCGTGCATTTAA+TGG | + | chr7_1:59486463-59486482 | None:intergenic | 30.0% | |
| AATAAAGTTCACATGGAGAT+GGG | - | chr7_1:59486699-59486718 | Msa1027190:intron | 30.0% | |
| GTTTAACGCTATAATATTCC+TGG | + | chr7_1:59486773-59486792 | None:intergenic | 30.0% | |
| ATTCTCATCTTTATGTTCCA+AGG | - | chr7_1:59486825-59486844 | Msa1027190:intron | 30.0% | |
| TTCCAAGGAATATTATTCCT+AGG | - | chr7_1:59486840-59486859 | Msa1027190:intron | 30.0% | |
| TTCCTAGGAATAATATTCCT+TGG | + | chr7_1:59486845-59486864 | None:intergenic | 30.0% | |
| AGTTTACCAAATTCATTCCT+AGG | + | chr7_1:59486860-59486879 | None:intergenic | 30.0% | |
| CATCATATTCCAATATTGTG+TGG | + | chr7_1:59487117-59487136 | None:intergenic | 30.0% | |
| ! | AATATTGGAATATGATGACG+AGG | - | chr7_1:59487120-59487139 | Msa1027190:intron | 30.0% |
| ! | ATATTGGAATATGATGACGA+GGG | - | chr7_1:59487121-59487140 | Msa1027190:intron | 30.0% |
| GATTTCACTTGATTAAAGAG+TGG | + | chr7_1:59487188-59487207 | None:intergenic | 30.0% | |
| CAAAAGATAAGGTAACAAAC+GGG | + | chr7_1:59487360-59487379 | None:intergenic | 30.0% | |
| TGTATTAGCGATGACATTAA+AGG | + | chr7_1:59487602-59487621 | None:intergenic | 30.0% | |
| ! | CAGCTTTAGTATTAGTGTTT+AGG | + | chr7_1:59487668-59487687 | None:intergenic | 30.0% |
| GTTGCTTAATATGTGTCATA+AGG | + | chr7_1:59487784-59487803 | None:intergenic | 30.0% | |
| CATATTAAGCAACCCAAAAA+TGG | - | chr7_1:59487791-59487810 | Msa1027190:intron | 30.0% | |
| !! | AATCATTAACTTGTGTCTTG+AGG | - | chr7_1:59487905-59487924 | Msa1027190:intron | 30.0% |
| !! | ATCATTAACTTGTGTCTTGA+GGG | - | chr7_1:59487906-59487925 | Msa1027190:intron | 30.0% |
| ACTTGATTAATTACAGGTTG+TGG | - | chr7_1:59487968-59487987 | Msa1027190:intron | 30.0% | |
| TGCGATTCAATATTGAAAGA+CGG | + | chr7_1:59488025-59488044 | None:intergenic | 30.0% | |
| TGATGACAAATGATGAAGTA+AGG | + | chr7_1:59488111-59488130 | None:intergenic | 30.0% | |
| ! | GTCATGAAGTTGTTGATTAT+AGG | + | chr7_1:59488228-59488247 | None:intergenic | 30.0% |
| ! | TTGAGAAGAAAGTGTGTGAA+AGG | - | chr7_1:59485298-59485317 | Msa1027190:CDS | 35.0% |
| TGACCTGATGACTCAAAATA+TGG | + | chr7_1:59485340-59485359 | None:intergenic | 35.0% | |
| !! | TATTTTGAGTCATCAGGTCA+AGG | - | chr7_1:59485340-59485359 | Msa1027190:CDS | 35.0% |
| ! | TCATTTTGCTGCAGTTCATA+AGG | - | chr7_1:59485369-59485388 | Msa1027190:CDS | 35.0% |
| GCAGCTAATGTATATTCTCA+AGG | - | chr7_1:59485775-59485794 | Msa1027190:intron | 35.0% | |
| ! | AAGGTATAAGAGTATGAGAG+CGG | - | chr7_1:59486076-59486095 | Msa1027190:intron | 35.0% |
| !! | AGCTCTGGTTAGGTTTTATA+TGG | - | chr7_1:59486351-59486370 | Msa1027190:intron | 35.0% |
| AAGTTTCATGGTAAGTCTAG+TGG | + | chr7_1:59486493-59486512 | None:intergenic | 35.0% | |
| ATGTGAGGAACTAAGTTTCA+TGG | + | chr7_1:59486505-59486524 | None:intergenic | 35.0% | |
| GTAATCATCACATGAATGTG+AGG | + | chr7_1:59486520-59486539 | None:intergenic | 35.0% | |
| ATTCCTGGGAATAAAACGAT+AGG | - | chr7_1:59486578-59486597 | Msa1027190:intron | 35.0% | |
| !! | ATTCCTATCGTTTTATTCCC+AGG | + | chr7_1:59486584-59486603 | None:intergenic | 35.0% |
| !!! | GGGAAATTTTTTCTATTCCC+AGG | + | chr7_1:59486664-59486683 | None:intergenic | 35.0% |
| AAATTTCCCAAAGAAAAGGG+TGG | - | chr7_1:59486675-59486694 | Msa1027190:intron | 35.0% | |
| AATTTCCCAAAGAAAAGGGT+GGG | - | chr7_1:59486676-59486695 | Msa1027190:intron | 35.0% | |
| ! | TTATTCCCACCCTTTTCTTT+GGG | + | chr7_1:59486684-59486703 | None:intergenic | 35.0% |
| ! | TTTATTCCCACCCTTTTCTT+TGG | + | chr7_1:59486685-59486704 | None:intergenic | 35.0% |
| GAATAAAGTTCACATGGAGA+TGG | - | chr7_1:59486698-59486717 | Msa1027190:intron | 35.0% | |
| !!! | TTCCTATTTTTATGGTTCCC+AGG | - | chr7_1:59486752-59486771 | Msa1027190:intron | 35.0% |
| TTCCTGGGAACCATAAAAAT+AGG | + | chr7_1:59486757-59486776 | None:intergenic | 35.0% | |
| TCATGTCAACCACACAATAT+TGG | - | chr7_1:59487105-59487124 | Msa1027190:intron | 35.0% | |
| GCGATTCAATATTGAAAGAC+GGG | + | chr7_1:59488024-59488043 | None:intergenic | 35.0% | |
| AGTAAGGATGAATGCAAAGT+TGG | + | chr7_1:59488095-59488114 | None:intergenic | 35.0% | |
| !! | GATGGATTTTCAAAAGGTGT+TGG | + | chr7_1:59488197-59488216 | None:intergenic | 35.0% |
| TAATCAACAACTTCATGACC+AGG | - | chr7_1:59488229-59488248 | Msa1027190:CDS | 35.0% | |
| AAAAACTTGCAAGCACCACA+AGG | + | chr7_1:59485280-59485299 | None:intergenic | 40.0% | |
| !! | GCACCATATTTTGAGTCATC+AGG | - | chr7_1:59485334-59485353 | Msa1027190:CDS | 40.0% |
| TGTTGTTACTCTCTGCTATG+AGG | - | chr7_1:59485456-59485475 | Msa1027190:CDS | 40.0% | |
| GAGCAACACAACCATAAACA+GGG | + | chr7_1:59485501-59485520 | None:intergenic | 40.0% | |
| TGAGCAACACAACCATAAAC+AGG | + | chr7_1:59485502-59485521 | None:intergenic | 40.0% | |
| AAAACTGGTAACCACTAACC+TGG | - | chr7_1:59485655-59485674 | Msa1027190:intron | 40.0% | |
| !! | TTATGAACTTGTTACCCTCC+AGG | + | chr7_1:59485676-59485695 | None:intergenic | 40.0% |
| GGACAAAAGAGACCACTAAA+AGG | + | chr7_1:59485832-59485851 | None:intergenic | 40.0% | |
| ! | AGGTATAAGAGTATGAGAGC+GGG | - | chr7_1:59486077-59486096 | Msa1027190:intron | 40.0% |
| TTTGACACATTTGTCAGCTC+TGG | - | chr7_1:59486336-59486355 | Msa1027190:intron | 40.0% | |
| TGGAACGAATGCATACACTA+AGG | - | chr7_1:59486371-59486390 | Msa1027190:intron | 40.0% | |
| ACATAACACTACCGTGAAAG+GGG | + | chr7_1:59486401-59486420 | None:intergenic | 40.0% | |
| CACATAACACTACCGTGAAA+GGG | + | chr7_1:59486402-59486421 | None:intergenic | 40.0% | |
| TGCATGTCTTGTGATCTCAA+AGG | - | chr7_1:59486420-59486439 | Msa1027190:intron | 40.0% | |
| !! | TACCTTTAGGGCACTCTTTA+AGG | - | chr7_1:59486958-59486977 | Msa1027190:intron | 40.0% |
| !! | ATCCTTAAAGAGTGCCCTAA+AGG | + | chr7_1:59486963-59486982 | None:intergenic | 40.0% |
| TAAAGAGTGGGTGATAGAGT+GGG | + | chr7_1:59487175-59487194 | None:intergenic | 40.0% | |
| TTAAAGAGTGGGTGATAGAG+TGG | + | chr7_1:59487176-59487195 | None:intergenic | 40.0% | |
| TCAAGTGTCACAACAGTGTT+AGG | - | chr7_1:59487333-59487352 | Msa1027190:intron | 40.0% | |
| !! | CTTTGAGGCTGTTGAAATTG+AGG | + | chr7_1:59488059-59488078 | None:intergenic | 40.0% |
| GGTGATATTGAAGAGCTTTG+AGG | + | chr7_1:59488074-59488093 | None:intergenic | 40.0% | |
| TCTTACATGTCCATGCACTT+TGG | - | chr7_1:59488143-59488162 | Msa1027190:CDS | 40.0% | |
| ! | GCTGCAGTTCATAAGGTGTT+TGG | - | chr7_1:59485376-59485395 | Msa1027190:CDS | 45.0% |
| GCATCAAGACGCTTATGAAC+TGG | + | chr7_1:59485436-59485455 | None:intergenic | 45.0% | |
| CCTGTTGTTGAAGAGCAAAG+AGG | + | chr7_1:59485525-59485544 | None:intergenic | 45.0% | |
| CCTCTTTGCTCTTCAACAAC+AGG | - | chr7_1:59485522-59485541 | Msa1027190:intron | 45.0% | |
| ! | GGTATAAGAGTATGAGAGCG+GGG | - | chr7_1:59486078-59486097 | Msa1027190:intron | 45.0% |
| ! | CACATTTGTCAGCTCTGGTT+AGG | - | chr7_1:59486341-59486360 | Msa1027190:intron | 45.0% |
| GCACATAACACTACCGTGAA+AGG | + | chr7_1:59486403-59486422 | None:intergenic | 45.0% | |
| ! | TCCCAGGAACGTTTTATACC+CGG | + | chr7_1:59486648-59486667 | None:intergenic | 45.0% |
| GGGTGGGAATAAAGTTCACA+TGG | - | chr7_1:59486692-59486711 | Msa1027190:intron | 45.0% | |
| ! | TGGAATATGATGACGAGGGT+TGG | - | chr7_1:59487125-59487144 | Msa1027190:intron | 45.0% |
| TGGGTGATAGAGTGGGATAT+TGG | + | chr7_1:59487168-59487187 | None:intergenic | 45.0% | |
| ! | TGAAAGACGGGCTTGTACAT+AGG | + | chr7_1:59488012-59488031 | None:intergenic | 45.0% |
| AAGAGGATGACCAAAGTGCA+TGG | + | chr7_1:59488156-59488175 | None:intergenic | 45.0% | |
| AAGGCAAAGCTTGGAATTCC+TGG | + | chr7_1:59488250-59488269 | None:intergenic | 45.0% | |
| TCTGCTATGAGGCTCTTGCT+AGG | - | chr7_1:59485467-59485486 | Msa1027190:CDS | 50.0% | |
| CTGCTATGAGGCTCTTGCTA+GGG | - | chr7_1:59485468-59485487 | Msa1027190:CDS | 50.0% | |
| AGGGCTACTGACCCTGTTTA+TGG | - | chr7_1:59485487-59485506 | Msa1027190:CDS | 50.0% | |
| ACTGGTAACCACTAACCTGG+AGG | - | chr7_1:59485658-59485677 | Msa1027190:intron | 50.0% | |
| CTGGTAACCACTAACCTGGA+GGG | - | chr7_1:59485659-59485678 | Msa1027190:intron | 50.0% | |
| CTTGTTACCCTCCAGGTTAG+TGG | + | chr7_1:59485669-59485688 | None:intergenic | 50.0% | |
| ACTAAGGCATGCCCCTTTCA+CGG | - | chr7_1:59486387-59486406 | Msa1027190:intron | 50.0% | |
| TCCCGGGTATAAAACGTTCC+TGG | - | chr7_1:59486643-59486662 | Msa1027190:intron | 50.0% | |
| ! | CCCAGGAACGTTTTATACCC+GGG | + | chr7_1:59486647-59486666 | None:intergenic | 50.0% |
| CCCGGGTATAAAACGTTCCT+GGG | - | chr7_1:59486644-59486663 | Msa1027190:intron | 50.0% | |
| ! | GATTTGGGGTGTGGGGATGA+CGG | - | chr7_1:59485247-59485266 | Msa1027190:CDS | 55.0% |
| ! | TTGGGGTGTGGGGATGACGG+TGG | - | chr7_1:59485250-59485269 | Msa1027190:CDS | 65.0% |
| ! | GGTGTGGGGATGACGGTGGT+GGG | - | chr7_1:59485254-59485273 | Msa1027190:CDS | 65.0% |
| !! | GATGACGGTGGTGGGCCTTG+TGG | - | chr7_1:59485262-59485281 | Msa1027190:CDS | 65.0% |
| ! | GGGTGTGGGGATGACGGTGG+TGG | - | chr7_1:59485253-59485272 | Msa1027190:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 59485244 | 59488271 | 59485244 | ID=Msa1027190;Name=Msa1027190 |
| chr7_1 | mRNA | 59485244 | 59488271 | 59485244 | ID=Msa1027190-mRNA-1;Parent=Msa1027190;Name=Msa1027190-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|195 |
| chr7_1 | exon | 59487972 | 59488271 | 59487972 | ID=Msa1027190-mRNA-1:exon:12124;Parent=Msa1027190-mRNA-1 |
| chr7_1 | exon | 59485244 | 59485531 | 59485244 | ID=Msa1027190-mRNA-1:exon:12123;Parent=Msa1027190-mRNA-1 |
| chr7_1 | CDS | 59487972 | 59488271 | 59487972 | ID=Msa1027190-mRNA-1:cds;Parent=Msa1027190-mRNA-1 |
| chr7_1 | CDS | 59485244 | 59485531 | 59485244 | ID=Msa1027190-mRNA-1:cds;Parent=Msa1027190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
