Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1028010 | XP_013449146.1 | 93.697 | 238 | 15 | 0 | 1 | 238 | 1 | 238 | 1.44e-164 | 464 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1028010 | sp|Q9SJW0|PHL7_ARATH | 47.904 | 167 | 81 | 4 | 9 | 172 | 11 | 174 | 2.68e-45 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1028010 | A0A072U1W8 | 93.697 | 238 | 15 | 0 | 1 | 238 | 1 | 238 | 6.86e-165 | 464 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1028010 | TF | GARP-G2-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1028010 | MtrunA17_Chr7g0242521 | 93.277 | 238 | 15 | 1 | 1 | 238 | 1 | 237 | 5.61e-166 | 457 |
| Msa1028010 | MtrunA17_Chr7g0254981 | 55.303 | 132 | 53 | 2 | 13 | 141 | 50 | 178 | 6.30e-44 | 149 |
| Msa1028010 | MtrunA17_Chr2g0291021 | 49.682 | 157 | 71 | 5 | 13 | 166 | 49 | 200 | 2.71e-43 | 149 |
| Msa1028010 | MtrunA17_Chr1g0175091 | 50.000 | 138 | 63 | 4 | 2 | 138 | 246 | 378 | 4.20e-36 | 132 |
| Msa1028010 | MtrunA17_Chr7g0261911 | 50.000 | 144 | 57 | 4 | 1 | 138 | 250 | 384 | 4.46e-35 | 130 |
| Msa1028010 | MtrunA17_Chr7g0258551 | 47.287 | 129 | 64 | 2 | 13 | 141 | 212 | 336 | 3.13e-34 | 126 |
| Msa1028010 | MtrunA17_Chr1g0190301 | 43.226 | 155 | 80 | 5 | 13 | 166 | 175 | 322 | 2.84e-32 | 121 |
| Msa1028010 | MtrunA17_Chr2g0321461 | 42.282 | 149 | 63 | 3 | 13 | 141 | 45 | 190 | 1.42e-29 | 114 |
| Msa1028010 | MtrunA17_Chr2g0310011 | 45.802 | 131 | 65 | 2 | 13 | 140 | 35 | 162 | 4.13e-29 | 112 |
| Msa1028010 | MtrunA17_Chr6g0461641 | 42.953 | 149 | 66 | 3 | 9 | 141 | 38 | 183 | 1.01e-28 | 111 |
| Msa1028010 | MtrunA17_Chr5g0409731 | 41.958 | 143 | 64 | 3 | 13 | 141 | 25 | 162 | 2.79e-28 | 108 |
| Msa1028010 | MtrunA17_Chr7g0274471 | 42.636 | 129 | 71 | 1 | 13 | 141 | 218 | 343 | 3.35e-28 | 110 |
| Msa1028010 | MtrunA17_Chr8g0356501 | 36.082 | 194 | 94 | 5 | 13 | 198 | 37 | 208 | 1.11e-27 | 108 |
| Msa1028010 | MtrunA17_Chr4g0042451 | 39.310 | 145 | 72 | 4 | 9 | 141 | 13 | 153 | 1.95e-26 | 104 |
| Msa1028010 | MtrunA17_Chr5g0417521 | 38.095 | 147 | 72 | 4 | 9 | 141 | 11 | 152 | 6.41e-25 | 100 |
| Msa1028010 | MtrunA17_Chr1g0175071 | 43.478 | 138 | 72 | 3 | 3 | 138 | 165 | 298 | 1.19e-23 | 97.1 |
| Msa1028010 | MtrunA17_Chr2g0290991 | 32.778 | 180 | 96 | 3 | 9 | 176 | 35 | 201 | 4.90e-23 | 95.1 |
| Msa1028010 | MtrunA17_Chr1g0197171 | 35.256 | 156 | 79 | 3 | 13 | 159 | 44 | 186 | 1.68e-20 | 87.8 |
| Msa1028010 | MtrunA17_Chr7g0258531 | 36.111 | 144 | 78 | 4 | 1 | 138 | 201 | 336 | 1.83e-16 | 77.4 |
| Msa1028010 | MtrunA17_Chr1g0175081 | 45.238 | 84 | 42 | 2 | 9 | 92 | 18 | 97 | 4.28e-16 | 71.6 |
| Msa1028010 | MtrunA17_Chr3g0095611 | 34.839 | 155 | 89 | 6 | 2 | 149 | 5 | 154 | 8.26e-14 | 68.2 |
| Msa1028010 | MtrunA17_Chr2g0320231 | 46.512 | 86 | 38 | 2 | 15 | 95 | 99 | 181 | 3.04e-13 | 68.2 |
| Msa1028010 | MtrunA17_Chr8g0379121 | 57.627 | 59 | 22 | 1 | 15 | 73 | 113 | 168 | 6.22e-13 | 67.4 |
| Msa1028010 | MtrunA17_Chr7g0243081 | 55.000 | 60 | 24 | 1 | 15 | 74 | 73 | 129 | 8.63e-13 | 67.0 |
| Msa1028010 | MtrunA17_Chr6g0479431 | 53.448 | 58 | 24 | 1 | 15 | 72 | 204 | 258 | 2.32e-12 | 65.5 |
| Msa1028010 | MtrunA17_Chr2g0288601 | 61.538 | 52 | 17 | 1 | 15 | 66 | 73 | 121 | 2.37e-12 | 62.4 |
| Msa1028010 | MtrunA17_Chr8g0366281 | 52.542 | 59 | 25 | 1 | 15 | 73 | 175 | 230 | 4.97e-12 | 64.7 |
| Msa1028010 | MtrunA17_Chr1g0154261 | 53.448 | 58 | 24 | 1 | 15 | 72 | 128 | 182 | 8.03e-12 | 63.5 |
| Msa1028010 | MtrunA17_Chr3g0109981 | 39.773 | 88 | 50 | 1 | 15 | 102 | 276 | 360 | 1.02e-11 | 63.9 |
| Msa1028010 | MtrunA17_Chr5g0410741 | 53.448 | 58 | 24 | 1 | 15 | 72 | 221 | 275 | 2.17e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1028010 | AT2G01060.1 | 47.904 | 167 | 81 | 4 | 9 | 172 | 11 | 174 | 2.73e-46 | 155 |
| Msa1028010 | AT5G06800.1 | 49.275 | 138 | 66 | 2 | 9 | 146 | 188 | 321 | 5.32e-38 | 136 |
| Msa1028010 | AT5G06800.2 | 47.887 | 142 | 67 | 2 | 9 | 146 | 188 | 326 | 1.10e-37 | 135 |
| Msa1028010 | AT4G28610.1 | 48.529 | 136 | 56 | 3 | 9 | 138 | 221 | 348 | 4.82e-33 | 124 |
| Msa1028010 | AT1G79430.2 | 42.857 | 154 | 69 | 4 | 13 | 161 | 34 | 173 | 1.48e-31 | 119 |
| Msa1028010 | AT5G29000.1 | 43.571 | 140 | 73 | 3 | 2 | 138 | 177 | 313 | 1.49e-31 | 119 |
| Msa1028010 | AT5G29000.3 | 43.571 | 140 | 73 | 3 | 2 | 138 | 177 | 313 | 1.49e-31 | 119 |
| Msa1028010 | AT5G29000.2 | 43.571 | 140 | 73 | 3 | 2 | 138 | 220 | 356 | 2.18e-31 | 119 |
| Msa1028010 | AT3G24120.1 | 38.690 | 168 | 79 | 3 | 13 | 168 | 41 | 196 | 1.29e-30 | 115 |
| Msa1028010 | AT1G69580.1 | 43.046 | 151 | 64 | 4 | 9 | 141 | 30 | 176 | 2.07e-30 | 115 |
| Msa1028010 | AT1G69580.2 | 42.763 | 152 | 64 | 4 | 9 | 141 | 30 | 177 | 3.55e-30 | 115 |
| Msa1028010 | AT3G04450.4 | 35.795 | 176 | 90 | 4 | 9 | 170 | 194 | 360 | 1.85e-29 | 114 |
| Msa1028010 | AT3G04450.2 | 35.795 | 176 | 90 | 4 | 9 | 170 | 194 | 360 | 1.85e-29 | 114 |
| Msa1028010 | AT4G13640.1 | 39.412 | 170 | 75 | 4 | 13 | 168 | 37 | 192 | 2.49e-29 | 111 |
| Msa1028010 | AT3G04450.1 | 35.795 | 176 | 90 | 4 | 9 | 170 | 234 | 400 | 3.31e-29 | 114 |
| Msa1028010 | AT3G04030.3 | 43.624 | 149 | 64 | 4 | 9 | 141 | 41 | 185 | 5.18e-29 | 112 |
| Msa1028010 | AT5G18240.1 | 45.517 | 145 | 59 | 5 | 13 | 141 | 45 | 185 | 6.29e-29 | 112 |
| Msa1028010 | AT5G18240.4 | 45.517 | 145 | 59 | 5 | 13 | 141 | 45 | 185 | 6.29e-29 | 112 |
| Msa1028010 | AT3G13040.3 | 43.537 | 147 | 74 | 3 | 1 | 141 | 228 | 371 | 7.07e-29 | 113 |
| Msa1028010 | AT3G13040.1 | 43.537 | 147 | 74 | 3 | 1 | 141 | 228 | 371 | 7.07e-29 | 113 |
| Msa1028010 | AT3G13040.2 | 43.537 | 147 | 74 | 3 | 1 | 141 | 228 | 371 | 7.07e-29 | 113 |
| Msa1028010 | AT3G24120.2 | 38.012 | 171 | 79 | 4 | 13 | 168 | 41 | 199 | 1.35e-28 | 110 |
| Msa1028010 | AT4G13640.2 | 38.728 | 173 | 75 | 5 | 13 | 168 | 37 | 195 | 2.27e-27 | 106 |
| Msa1028010 | AT2G01060.2 | 44.800 | 125 | 66 | 3 | 51 | 172 | 1 | 125 | 2.44e-27 | 105 |
| Msa1028010 | AT2G20400.2 | 44.094 | 127 | 67 | 2 | 13 | 138 | 231 | 354 | 3.03e-27 | 108 |
| Msa1028010 | AT3G04030.2 | 42.953 | 149 | 64 | 5 | 9 | 141 | 41 | 184 | 2.03e-26 | 105 |
| Msa1028010 | AT2G20400.1 | 42.063 | 126 | 70 | 1 | 13 | 138 | 231 | 353 | 4.32e-26 | 105 |
| Msa1028010 | AT5G18240.5 | 44.138 | 145 | 59 | 6 | 13 | 141 | 45 | 183 | 1.03e-25 | 103 |
| Msa1028010 | AT5G45580.1 | 38.194 | 144 | 68 | 3 | 13 | 138 | 7 | 147 | 4.74e-25 | 99.8 |
| Msa1028010 | AT5G45580.2 | 38.194 | 144 | 68 | 3 | 13 | 138 | 23 | 163 | 6.66e-25 | 99.8 |
| Msa1028010 | AT3G04030.1 | 41.611 | 149 | 61 | 5 | 9 | 141 | 41 | 179 | 1.51e-24 | 100 |
| Msa1028010 | AT5G18240.2 | 43.448 | 145 | 56 | 6 | 13 | 141 | 45 | 179 | 2.02e-24 | 100 |
| Msa1028010 | AT5G18240.3 | 43.448 | 145 | 56 | 6 | 13 | 141 | 45 | 179 | 2.02e-24 | 100 |
| Msa1028010 | AT3G12730.1 | 37.778 | 135 | 73 | 3 | 13 | 139 | 23 | 154 | 4.27e-23 | 94.0 |
| Msa1028010 | AT5G06800.3 | 62.319 | 69 | 23 | 1 | 9 | 77 | 188 | 253 | 1.00e-22 | 94.0 |
| Msa1028010 | AT5G29000.4 | 46.809 | 94 | 47 | 1 | 2 | 95 | 220 | 310 | 1.46e-19 | 85.9 |
| Msa1028010 | AT3G04450.3 | 54.412 | 68 | 28 | 1 | 9 | 76 | 234 | 298 | 1.57e-18 | 83.2 |
| Msa1028010 | AT1G79430.1 | 37.815 | 119 | 58 | 3 | 48 | 161 | 1 | 108 | 3.16e-17 | 79.3 |
| Msa1028010 | AT2G42660.1 | 61.905 | 63 | 21 | 1 | 15 | 77 | 52 | 111 | 8.73e-16 | 74.7 |
| Msa1028010 | AT2G06020.1 | 50.820 | 61 | 27 | 1 | 13 | 73 | 86 | 143 | 1.06e-15 | 75.1 |
| Msa1028010 | AT3G04030.5 | 40.000 | 110 | 49 | 3 | 48 | 141 | 1 | 109 | 1.11e-14 | 72.4 |
| Msa1028010 | AT2G40260.1 | 60.345 | 58 | 20 | 1 | 15 | 72 | 84 | 138 | 2.24e-14 | 72.0 |
| Msa1028010 | AT4G04605.1 | 51.351 | 74 | 32 | 2 | 15 | 88 | 16 | 85 | 2.18e-13 | 67.4 |
| Msa1028010 | AT5G42630.2 | 50.000 | 74 | 33 | 2 | 15 | 87 | 107 | 177 | 2.73e-13 | 67.4 |
| Msa1028010 | AT5G42630.1 | 50.000 | 74 | 33 | 2 | 15 | 87 | 107 | 177 | 3.47e-13 | 67.8 |
| Msa1028010 | AT4G17695.1 | 38.835 | 103 | 47 | 2 | 15 | 104 | 166 | 265 | 8.76e-12 | 64.3 |
| Msa1028010 | AT5G16560.1 | 46.575 | 73 | 34 | 2 | 15 | 85 | 221 | 290 | 1.45e-11 | 63.9 |
| Msa1028010 | AT2G38300.1 | 55.932 | 59 | 23 | 1 | 15 | 73 | 56 | 111 | 1.97e-11 | 63.2 |
| Msa1028010 | AT2G02060.2 | 60.000 | 55 | 19 | 1 | 15 | 69 | 31 | 82 | 2.15e-11 | 62.4 |
| Msa1028010 | AT2G02060.1 | 60.000 | 55 | 19 | 1 | 15 | 69 | 31 | 82 | 2.15e-11 | 62.4 |
| Msa1028010 | AT1G14600.1 | 55.932 | 59 | 23 | 1 | 15 | 73 | 25 | 80 | 2.42e-11 | 62.4 |
| Msa1028010 | AT1G32240.2 | 53.448 | 58 | 24 | 1 | 15 | 72 | 215 | 269 | 2.47e-11 | 63.2 |
| Msa1028010 | AT1G32240.1 | 53.448 | 58 | 24 | 1 | 15 | 72 | 215 | 269 | 2.79e-11 | 62.8 |
| Msa1028010 | AT4G37180.1 | 51.724 | 58 | 25 | 1 | 13 | 70 | 210 | 264 | 8.66e-11 | 61.2 |
| Msa1028010 | AT4G37180.2 | 51.724 | 58 | 25 | 1 | 13 | 70 | 217 | 271 | 8.99e-11 | 61.2 |
Find 59 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTTACTTGTGGTGGATTC+TGG | 0.193661 | 7_1:+60557013 | None:intergenic |
| GGTGCCTAGTTTCTTATTAT+AGG | 0.220382 | 7_1:-60555948 | None:intergenic |
| ACCAAACCTGGAACCTTTCT+TGG | 0.254138 | 7_1:-60556006 | Msa1028010:CDS |
| TACGATATAGAACAGAAATT+TGG | 0.266828 | 7_1:+60556862 | None:intergenic |
| GGTGGATTCTGGAATCAATT+TGG | 0.287077 | 7_1:+60557024 | None:intergenic |
| TGGAGGCTGTAAATAGGCTT+GGG | 0.332347 | 7_1:-60559089 | Msa1028010:CDS |
| TCTTTGTGGAGGCTGTAAAT+AGG | 0.333114 | 7_1:-60559095 | Msa1028010:CDS |
| TCCAAGAAAGGTTCCAGGTT+TGG | 0.364366 | 7_1:+60556005 | None:intergenic |
| GCACCTCAGCCTGCATTTGA+AGG | 0.377972 | 7_1:+60556740 | None:intergenic |
| TTGGATATGTTCAGAAATAC+AGG | 0.386624 | 7_1:-60557051 | Msa1028010:intron |
| ACACGTCAAAAGCCACTTGC+AGG | 0.391889 | 7_1:-60557938 | Msa1028010:intron |
| GTGGAGGCTGTAAATAGGCT+TGG | 0.397815 | 7_1:-60559090 | Msa1028010:CDS |
| AAGAAAAGCTTGCAAGCCTT+TGG | 0.401704 | 7_1:-60556191 | Msa1028010:CDS |
| CTGACTCCAAGAAAGGTTCC+AGG | 0.408019 | 7_1:+60556000 | None:intergenic |
| GGAAAGTACCTAGACAGAAT+TGG | 0.410201 | 7_1:-60556241 | Msa1028010:CDS |
| TGCTGTTTGATGTTCTTCCT+CGG | 0.424128 | 7_1:+60556108 | None:intergenic |
| GAACCTTTCTTGGAGTCAGC+TGG | 0.440714 | 7_1:-60555996 | Msa1028010:CDS |
| ATTCCTTTCAGTATACCTCT+TGG | 0.449845 | 7_1:+60557994 | None:intergenic |
| CAGAATTCAGCAACCAAACC+TGG | 0.457761 | 7_1:-60556018 | Msa1028010:CDS |
| GTTGCTGAATTCTGAGGTAG+TGG | 0.463218 | 7_1:+60556027 | None:intergenic |
| AACTAGGCACCAAAGGTGAT+TGG | 0.478600 | 7_1:+60555960 | None:intergenic |
| CAGCCTCCACAAAGAGATCA+TGG | 0.480797 | 7_1:+60559103 | None:intergenic |
| CAGCCAGCTGACTCCAAGAA+AGG | 0.496169 | 7_1:+60555993 | None:intergenic |
| AGCAACCTACCAATCACCTT+TGG | 0.500347 | 7_1:-60555969 | Msa1028010:CDS |
| ACAACTCCATGATCTCTTTG+TGG | 0.503279 | 7_1:-60559109 | Msa1028010:CDS |
| ACTGAAAGGAATGAAGGCTA+TGG | 0.503485 | 7_1:-60557983 | Msa1028010:CDS |
| TACTTTGTCCAATTCTGTCT+AGG | 0.510514 | 7_1:+60556233 | None:intergenic |
| CTGAAAGGAATGAAGGCTAT+GGG | 0.510802 | 7_1:-60557982 | Msa1028010:CDS |
| CACACAAAGAACGCTTAAGA+TGG | 0.520735 | 7_1:-60559137 | Msa1028010:CDS |
| TCAAACAGCAAGAAAGCAAA+AGG | 0.520861 | 7_1:-60556095 | Msa1028010:CDS |
| AAAAGAAGTCCTTCAAATGC+AGG | 0.534364 | 7_1:-60556749 | Msa1028010:CDS |
| ATGGGTTCCACTCGCTCAGA+TGG | 0.537642 | 7_1:-60559168 | Msa1028010:CDS |
| AGGTATACTGAAAGGAATGA+AGG | 0.543020 | 7_1:-60557989 | Msa1028010:CDS |
| TTCAGATTCCTCAGTAAGAG+AGG | 0.547975 | 7_1:+60556147 | None:intergenic |
| AAAGCTTGCAAGCCTTTGGT+TGG | 0.548496 | 7_1:-60556187 | Msa1028010:CDS |
| GAGGCTGTAAATAGGCTTGG+GGG | 0.562654 | 7_1:-60559087 | Msa1028010:CDS |
| AATAAGAAACTAGGCACCAA+AGG | 0.567599 | 7_1:+60555953 | None:intergenic |
| GATTATTTATGAAGGAGGAA+AGG | 0.568981 | 7_1:-60556914 | Msa1028010:intron |
| GGAGGCTGTAAATAGGCTTG+GGG | 0.579180 | 7_1:-60559088 | Msa1028010:CDS |
| AAAACCTATAATAAGAAACT+AGG | 0.579659 | 7_1:+60555944 | None:intergenic |
| TCTTAAGCGTTCTTTGTGTG+TGG | 0.591577 | 7_1:+60559140 | None:intergenic |
| GGTTTGGTTGCTGAATTCTG+AGG | 0.596881 | 7_1:+60556021 | None:intergenic |
| GGTGTTGCTTTACCAACCAA+AGG | 0.599644 | 7_1:+60556175 | None:intergenic |
| AGTCCTTCAAATGCAGGCTG+AGG | 0.600265 | 7_1:-60556743 | Msa1028010:CDS |
| ACCTCTTCCCTCTCTTACTG+AGG | 0.608111 | 7_1:-60556155 | Msa1028010:CDS |
| GATCCTAGTTCAAAACCTGT+AGG | 0.608319 | 7_1:+60556052 | None:intergenic |
| ATCCTTTAAAACACAATCCG+AGG | 0.610019 | 7_1:-60556125 | Msa1028010:CDS |
| AGGCACCAAAGGTGATTGGT+AGG | 0.616341 | 7_1:+60555964 | None:intergenic |
| ACGCATGAGTGATAAAGTTG+AGG | 0.616870 | 7_1:-60556713 | Msa1028010:intron |
| TCCTCAGTAAGAGAGGGAAG+AGG | 0.625723 | 7_1:+60556154 | None:intergenic |
| TCAGATTCCTCAGTAAGAGA+GGG | 0.627051 | 7_1:+60556148 | None:intergenic |
| ACACCAAGAGGTATACTGAA+AGG | 0.630195 | 7_1:-60557997 | Msa1028010:CDS |
| TGAAAGGAATGAAGGCTATG+GGG | 0.636336 | 7_1:-60557981 | Msa1028010:CDS |
| GAAAGGAATGAAGGCTATGG+GGG | 0.636670 | 7_1:-60557980 | Msa1028010:CDS |
| ACTCCATGATCTCTTTGTGG+AGG | 0.654213 | 7_1:-60559106 | Msa1028010:CDS |
| TTGTCAGGGGCAACACCAAG+AGG | 0.658933 | 7_1:-60558009 | Msa1028010:intron |
| GGTGGAGAAGAACCTGCAAG+TGG | 0.679561 | 7_1:+60557926 | None:intergenic |
| AGGCTGAAAATTGAAGCACA+AGG | 0.685954 | 7_1:-60556262 | Msa1028010:CDS |
| AGGCTGTAAATAGGCTTGGG+GGG | 0.689265 | 7_1:-60559086 | Msa1028010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAAATTATTAGTTCAA+AGG | - | chr7_1:60556319-60556338 | Msa1028010:intron | 10.0% |
| !!! | ATTTTTAAATAAAAAAGAGA+AGG | + | chr7_1:60556934-60556953 | None:intergenic | 10.0% |
| !! | AAATAATTTAATGTAGTTTA+TGG | + | chr7_1:60557923-60557942 | None:intergenic | 10.0% |
| !!! | ATATAGTCTTTATAATTTTT+AGG | - | chr7_1:60558676-60558695 | Msa1028010:intron | 10.0% |
| !!! | AAACAATATAATTATTTCTA+TGG | - | chr7_1:60558736-60558755 | Msa1028010:intron | 10.0% |
| !! | AATATGCTAATTAGTAAAAA+TGG | - | chr7_1:60557739-60557758 | Msa1028010:intron | 15.0% |
| !! | TACTTTAATATAAGTCAATA+TGG | + | chr7_1:60557979-60557998 | None:intergenic | 15.0% |
| !! | TTTAATCAAATACTATTACT+TGG | + | chr7_1:60558140-60558159 | None:intergenic | 15.0% |
| !!! | TATGATATTTTAATTTGTCA+AGG | - | chr7_1:60558585-60558604 | Msa1028010:intron | 15.0% |
| !!! | CAAAATTTTGTATTATTTGT+TGG | - | chr7_1:60558814-60558833 | Msa1028010:intron | 15.0% |
| !!! | GTCTAAGAAATTTTCATATT+TGG | - | chr7_1:60556492-60556511 | Msa1028010:intron | 20.0% |
| !!! | AAGAAATTTTCATATTTGGA+AGG | - | chr7_1:60556496-60556515 | Msa1028010:intron | 20.0% |
| !! | ACAAAAAATTACACTAATAG+AGG | + | chr7_1:60556580-60556599 | None:intergenic | 20.0% |
| !! | GAAAGAAAAGAAAAAAAACA+GGG | + | chr7_1:60556796-60556815 | None:intergenic | 20.0% |
| !! | AGAAAGAAAAGAAAAAAAAC+AGG | + | chr7_1:60556797-60556816 | None:intergenic | 20.0% |
| !! | TTTAAATAAAAAAGAGAAGG+AGG | + | chr7_1:60556931-60556950 | None:intergenic | 20.0% |
| !! | TAATATTTAGTTAGAGTTGT+AGG | - | chr7_1:60557025-60557044 | Msa1028010:CDS | 20.0% |
| !! | AATTTGAATATTGTTTGTCA+GGG | - | chr7_1:60557094-60557113 | Msa1028010:intron | 20.0% |
| !!! | ATTTTACGACCAATATAAAT+GGG | + | chr7_1:60557215-60557234 | None:intergenic | 20.0% |
| !!! | AATTTTACGACCAATATAAA+TGG | + | chr7_1:60557216-60557235 | None:intergenic | 20.0% |
| !!! | TTATCTTATACGATTTTTGA+TGG | - | chr7_1:60557556-60557575 | Msa1028010:intron | 20.0% |
| !!! | TGATGGATAAAATGTTATTT+TGG | - | chr7_1:60557573-60557592 | Msa1028010:intron | 20.0% |
| !! | TTCGTAATTCATATAAATGT+GGG | + | chr7_1:60557720-60557739 | None:intergenic | 20.0% |
| !! | TTTCGTAATTCATATAAATG+TGG | + | chr7_1:60557721-60557740 | None:intergenic | 20.0% |
| !! | TCTCAAAAAAACTATAATCT+CGG | - | chr7_1:60557808-60557827 | Msa1028010:intron | 20.0% |
| !! | TTAATATAAGTCAATATGGA+TGG | + | chr7_1:60557975-60557994 | None:intergenic | 20.0% |
| !!! | ACTTGTATTTCAATTTTCAA+GGG | + | chr7_1:60558015-60558034 | None:intergenic | 20.0% |
| !!! | TACTTGTATTTCAATTTTCA+AGG | + | chr7_1:60558016-60558035 | None:intergenic | 20.0% |
| !! | TTTATAGTATTTGAACCTAT+AGG | - | chr7_1:60558430-60558449 | Msa1028010:intron | 20.0% |
| !!! | AGAATTGTAGAAAGTTTTAA+AGG | - | chr7_1:60558702-60558721 | Msa1028010:intron | 20.0% |
| !!! | GAATTGTAGAAAGTTTTAAA+GGG | - | chr7_1:60558703-60558722 | Msa1028010:intron | 20.0% |
| !!! | ATTTTGTATTATTTGTTGGA+AGG | - | chr7_1:60558818-60558837 | Msa1028010:intron | 20.0% |
| !! | ATCATGCAAAGTATTATTAG+TGG | + | chr7_1:60556075-60556094 | None:intergenic | 25.0% |
| ! | AGTCGTGAATGAATAATTTA+CGG | - | chr7_1:60556194-60556213 | Msa1028010:CDS | 25.0% |
| ! | TTCAAAGGAAATATGTCAAA+TGG | - | chr7_1:60556334-60556353 | Msa1028010:intron | 25.0% |
| ! | CTTATTTGAATTGAGATAGA+TGG | - | chr7_1:60556534-60556553 | Msa1028010:intron | 25.0% |
| ! | GATTGTTGAATAAGATTTGA+TGG | - | chr7_1:60556650-60556669 | Msa1028010:intron | 25.0% |
| !!! | TTGTCATCAATTTTGATTGT+CGG | + | chr7_1:60556743-60556762 | None:intergenic | 25.0% |
| !! | TTTTTCTTAAGTCAAGTCAA+AGG | + | chr7_1:60556840-60556859 | None:intergenic | 25.0% |
| ! | CAATTTGAATATTGTTTGTC+AGG | - | chr7_1:60557093-60557112 | Msa1028010:intron | 25.0% |
| ! | ATTTGAATATTGTTTGTCAG+GGG | - | chr7_1:60557095-60557114 | Msa1028010:intron | 25.0% |
| !! | CAAGTATTTAGAGTAGTTTA+TGG | - | chr7_1:60557285-60557304 | Msa1028010:intron | 25.0% |
| ! | ACAACACATGAAAAATTTGT+TGG | - | chr7_1:60557520-60557539 | Msa1028010:intron | 25.0% |
| !!! | TGATTTGTAAGACTGTTTTA+AGG | + | chr7_1:60557639-60557658 | None:intergenic | 25.0% |
| ! | CTCAAAAAAACTATAATCTC+GGG | - | chr7_1:60557809-60557828 | Msa1028010:intron | 25.0% |
| ! | GTTATAATTTCACTTGAAGT+TGG | + | chr7_1:60558174-60558193 | None:intergenic | 25.0% |
| ! | TGTTCCATGATTATTTATGA+AGG | - | chr7_1:60558195-60558214 | Msa1028010:intron | 25.0% |
| ! | TACGATATAGAACAGAAATT+TGG | + | chr7_1:60558258-60558277 | None:intergenic | 25.0% |
| ! | GTAAATGTAGAAGACATATT+TGG | + | chr7_1:60558644-60558663 | None:intergenic | 25.0% |
| ATCTACAAATTGCACTAAAC+AGG | + | chr7_1:60556100-60556119 | None:intergenic | 30.0% | |
| ! | CCAATTCGGTTTTTAAATCA+TGG | + | chr7_1:60556158-60556177 | None:intergenic | 30.0% |
| CCATGATTTAAAAACCGAAT+TGG | - | chr7_1:60556155-60556174 | Msa1028010:CDS | 30.0% | |
| GATTTAAAAACCGAATTGGA+CGG | - | chr7_1:60556159-60556178 | Msa1028010:CDS | 30.0% | |
| TTATTTGAACAGTTTGATCG+TGG | - | chr7_1:60556222-60556241 | Msa1028010:CDS | 30.0% | |
| !! | TACCAAAGGGTACTAAAAAA+GGG | - | chr7_1:60556367-60556386 | Msa1028010:intron | 30.0% |
| TACACTAATAGAGGTTTATG+TGG | + | chr7_1:60556571-60556590 | None:intergenic | 30.0% | |
| !!! | ATTTTAAAGTAGAGTTGTCG+AGG | + | chr7_1:60556688-60556707 | None:intergenic | 30.0% |
| TATTTAGTTAGAGTTGTAGG+AGG | - | chr7_1:60557028-60557047 | Msa1028010:CDS | 30.0% | |
| ! | ATTTTAGACAACTTGTACGT+GGG | - | chr7_1:60557597-60557616 | Msa1028010:intron | 30.0% |
| ACAAGAAAACTTCAGTTGTA+CGG | + | chr7_1:60557666-60557685 | None:intergenic | 30.0% | |
| !! | GTTTGGTTTGCTAAAAAACA+AGG | + | chr7_1:60557694-60557713 | None:intergenic | 30.0% |
| AAAAAACTATAATCTCGGGT+TGG | - | chr7_1:60557813-60557832 | Msa1028010:intron | 30.0% | |
| AATGACTAATATGCTCATCT+TGG | - | chr7_1:60558047-60558066 | Msa1028010:intron | 30.0% | |
| TTGGATATGTTCAGAAATAC+AGG | - | chr7_1:60558066-60558085 | Msa1028010:intron | 30.0% | |
| CTAAACCAAAAACTTACTTG+TGG | + | chr7_1:60558117-60558136 | None:intergenic | 30.0% | |
| TCCATGATTATTTATGAAGG+AGG | - | chr7_1:60558198-60558217 | Msa1028010:intron | 30.0% | |
| TCCTCCTTCATAAATAATCA+TGG | + | chr7_1:60558202-60558221 | None:intergenic | 30.0% | |
| GATTATTTATGAAGGAGGAA+AGG | - | chr7_1:60558203-60558222 | Msa1028010:intron | 30.0% | |
| CTTTAATGACTACATCCTAT+AGG | + | chr7_1:60558448-60558467 | None:intergenic | 30.0% | |
| TTATTCATTCACGACTCAAC+TGG | + | chr7_1:60556190-60556209 | None:intergenic | 35.0% | |
| TGGTTATGTCCAGATTCAAA+CGG | - | chr7_1:60556242-60556261 | Msa1028010:CDS | 35.0% | |
| ACAATGGTTGAACTATGATC+CGG | - | chr7_1:60556267-60556286 | Msa1028010:CDS | 35.0% | |
| !! | TTTTAGTACCCTTTGGTAGT+AGG | + | chr7_1:60556365-60556384 | None:intergenic | 35.0% |
| !! | CTACCAAAGGGTACTAAAAA+AGG | - | chr7_1:60556366-60556385 | Msa1028010:intron | 35.0% |
| !!! | AACCCTTTTTTAGTACCCTT+TGG | + | chr7_1:60556372-60556391 | None:intergenic | 35.0% |
| TGACAACGTAAATGCATGAT+TGG | - | chr7_1:60556757-60556776 | Msa1028010:CDS | 35.0% | |
| AAACCAAGCTCTTTGATACT+TGG | - | chr7_1:60556864-60556883 | Msa1028010:intron | 35.0% | |
| ATTCCTTTCAGTATACCTCT+TGG | + | chr7_1:60557126-60557145 | None:intergenic | 35.0% | |
| AGGTATACTGAAAGGAATGA+AGG | - | chr7_1:60557128-60557147 | Msa1028010:intron | 35.0% | |
| TCTTCTCCACCCATTTATAT+TGG | - | chr7_1:60557203-60557222 | Msa1028010:intron | 35.0% | |
| TTACGACCAATATAAATGGG+TGG | + | chr7_1:60557212-60557231 | None:intergenic | 35.0% | |
| ! | CATTTTAGACAACTTGTACG+TGG | - | chr7_1:60557596-60557615 | Msa1028010:intron | 35.0% |
| ! | GTTTGCTAAAAAACAAGGAC+AGG | + | chr7_1:60557689-60557708 | None:intergenic | 35.0% |
| ! | ATCCACCACAAGTAAGTTTT+TGG | - | chr7_1:60558109-60558128 | Msa1028010:intron | 35.0% |
| AACCAAAAACTTACTTGTGG+TGG | + | chr7_1:60558114-60558133 | None:intergenic | 35.0% | |
| AAAAGAAGTCCTTCAAATGC+AGG | - | chr7_1:60558368-60558387 | Msa1028010:intron | 35.0% | |
| GAACATGTATAACTTCCAAG+AGG | - | chr7_1:60558760-60558779 | Msa1028010:intron | 35.0% | |
| TACTTTGTCCAATTCTGTCT+AGG | + | chr7_1:60558887-60558906 | None:intergenic | 35.0% | |
| !! | ATCCTTTAAAACACAATCCG+AGG | - | chr7_1:60558992-60559011 | Msa1028010:intron | 35.0% |
| !! | TTCCTCGGATTGTGTTTTAA+AGG | + | chr7_1:60558997-60559016 | None:intergenic | 35.0% |
| TCAAACAGCAAGAAAGCAAA+AGG | - | chr7_1:60559022-60559041 | Msa1028010:intron | 35.0% | |
| ! | GATGAGAATGTTTTTCCTAC+AGG | - | chr7_1:60559050-60559069 | Msa1028010:intron | 35.0% |
| !!! | TTTCCTACAGGTTTTGAACT+AGG | - | chr7_1:60559062-60559081 | Msa1028010:intron | 35.0% |
| AATAAGAAACTAGGCACCAA+AGG | + | chr7_1:60559167-60559186 | None:intergenic | 35.0% | |
| TCTTAAGCGTTCTTTGTGTG+TGG | + | chr7_1:60555980-60555999 | None:intergenic | 40.0% | |
| CACACAAAGAACGCTTAAGA+TGG | - | chr7_1:60555980-60555999 | Msa1028010:CDS | 40.0% | |
| ACAACTCCATGATCTCTTTG+TGG | - | chr7_1:60556008-60556027 | Msa1028010:CDS | 40.0% | |
| TCTTTGTGGAGGCTGTAAAT+AGG | - | chr7_1:60556022-60556041 | Msa1028010:CDS | 40.0% | |
| AGTGGCAAAAACTCACTATC+TGG | + | chr7_1:60556057-60556076 | None:intergenic | 40.0% | |
| CCATTGTAACCGTTTGAATC+TGG | + | chr7_1:60556254-60556273 | None:intergenic | 40.0% | |
| CCAGATTCAAACGGTTACAA+TGG | - | chr7_1:60556251-60556270 | Msa1028010:CDS | 40.0% | |
| ATGGTCAATCCTACTACCAA+AGG | - | chr7_1:60556353-60556372 | Msa1028010:intron | 40.0% | |
| TGGTCAATCCTACTACCAAA+GGG | - | chr7_1:60556354-60556373 | Msa1028010:intron | 40.0% | |
| AGTCCAAGTATCAAAGAGCT+TGG | + | chr7_1:60556870-60556889 | None:intergenic | 40.0% | |
| ! | ACACCAAGAGGTATACTGAA+AGG | - | chr7_1:60557120-60557139 | Msa1028010:intron | 40.0% |
| ACTGAAAGGAATGAAGGCTA+TGG | - | chr7_1:60557134-60557153 | Msa1028010:intron | 40.0% | |
| CTGAAAGGAATGAAGGCTAT+GGG | - | chr7_1:60557135-60557154 | Msa1028010:intron | 40.0% | |
| TGAAAGGAATGAAGGCTATG+GGG | - | chr7_1:60557136-60557155 | Msa1028010:intron | 40.0% | |
| ATCCGCAAAACAGTAAGTAC+TGG | - | chr7_1:60557357-60557376 | Msa1028010:intron | 40.0% | |
| ! | GTCCAGTACTTACTGTTTTG+CGG | + | chr7_1:60557362-60557381 | None:intergenic | 40.0% |
| CATATAAATGTGGGTGCGTT+TGG | + | chr7_1:60557711-60557730 | None:intergenic | 40.0% | |
| !! | GGTGGATTCTGGAATCAATT+TGG | + | chr7_1:60558096-60558115 | None:intergenic | 40.0% |
| !! | AACTTACTTGTGGTGGATTC+TGG | + | chr7_1:60558107-60558126 | None:intergenic | 40.0% |
| ACGCATGAGTGATAAAGTTG+AGG | - | chr7_1:60558404-60558423 | Msa1028010:intron | 40.0% | |
| !!! | CCATGTCTGTTTTTTCCTCT+TGG | + | chr7_1:60558778-60558797 | None:intergenic | 40.0% |
| CCAAGAGGAAAAAACAGACA+TGG | - | chr7_1:60558775-60558794 | Msa1028010:intron | 40.0% | |
| GGAAGGTTCAAAAAAGCTTG+AGG | - | chr7_1:60558835-60558854 | Msa1028010:intron | 40.0% | |
| AGGCTGAAAATTGAAGCACA+AGG | - | chr7_1:60558855-60558874 | Msa1028010:intron | 40.0% | |
| !! | GGAAAGTACCTAGACAGAAT+TGG | - | chr7_1:60558876-60558895 | Msa1028010:intron | 40.0% |
| AAGAAAAGCTTGCAAGCCTT+TGG | - | chr7_1:60558926-60558945 | Msa1028010:intron | 40.0% | |
| TCAGATTCCTCAGTAAGAGA+GGG | + | chr7_1:60558972-60558991 | None:intergenic | 40.0% | |
| TTCAGATTCCTCAGTAAGAG+AGG | + | chr7_1:60558973-60558992 | None:intergenic | 40.0% | |
| ! | TGCTGTTTGATGTTCTTCCT+CGG | + | chr7_1:60559012-60559031 | None:intergenic | 40.0% |
| GATCCTAGTTCAAAACCTGT+AGG | + | chr7_1:60559068-60559087 | None:intergenic | 40.0% | |
| ACTCCATGATCTCTTTGTGG+AGG | - | chr7_1:60556011-60556030 | Msa1028010:CDS | 45.0% | |
| TGGAGGCTGTAAATAGGCTT+GGG | - | chr7_1:60556028-60556047 | Msa1028010:CDS | 45.0% | |
| ACTGGTTGAACCGTCCAATT+CGG | + | chr7_1:60556172-60556191 | None:intergenic | 45.0% | |
| CTATGATCCGGATGTCTTGT+AGG | - | chr7_1:60556279-60556298 | Msa1028010:CDS | 45.0% | |
| CATTGAGCCTACAAGACATC+CGG | + | chr7_1:60556289-60556308 | None:intergenic | 45.0% | |
| TGTCTTGTAGGCTCAATGTC+TGG | - | chr7_1:60556291-60556310 | Msa1028010:intron | 45.0% | |
| GAAAGGAATGAAGGCTATGG+GGG | - | chr7_1:60557137-60557156 | Msa1028010:intron | 45.0% | |
| AAAGCTTGCAAGCCTTTGGT+TGG | - | chr7_1:60558930-60558949 | Msa1028010:intron | 45.0% | |
| !! | GGTGTTGCTTTACCAACCAA+AGG | + | chr7_1:60558945-60558964 | None:intergenic | 45.0% |
| !! | GTTGCTGAATTCTGAGGTAG+TGG | + | chr7_1:60559093-60559112 | None:intergenic | 45.0% |
| ! | GGTTTGGTTGCTGAATTCTG+AGG | + | chr7_1:60559099-60559118 | None:intergenic | 45.0% |
| CAGAATTCAGCAACCAAACC+TGG | - | chr7_1:60559099-60559118 | Msa1028010:CDS | 45.0% | |
| ACCAAACCTGGAACCTTTCT+TGG | - | chr7_1:60559111-60559130 | Msa1028010:CDS | 45.0% | |
| TCCAAGAAAGGTTCCAGGTT+TGG | + | chr7_1:60559115-60559134 | None:intergenic | 45.0% | |
| AGCAACCTACCAATCACCTT+TGG | - | chr7_1:60559148-60559167 | Msa1028010:CDS | 45.0% | |
| AACTAGGCACCAAAGGTGAT+TGG | + | chr7_1:60559160-60559179 | None:intergenic | 45.0% | |
| CAGCCTCCACAAAGAGATCA+TGG | + | chr7_1:60556017-60556036 | None:intergenic | 50.0% | |
| GTGGAGGCTGTAAATAGGCT+TGG | - | chr7_1:60556027-60556046 | Msa1028010:CDS | 50.0% | |
| GGAGGCTGTAAATAGGCTTG+GGG | - | chr7_1:60556029-60556048 | Msa1028010:CDS | 50.0% | |
| GAGGCTGTAAATAGGCTTGG+GGG | - | chr7_1:60556030-60556049 | Msa1028010:CDS | 50.0% | |
| AGGCTGTAAATAGGCTTGGG+GGG | - | chr7_1:60556031-60556050 | Msa1028010:CDS | 50.0% | |
| ACACGTCAAAAGCCACTTGC+AGG | - | chr7_1:60557179-60557198 | Msa1028010:intron | 50.0% | |
| AGTCCTTCAAATGCAGGCTG+AGG | - | chr7_1:60558374-60558393 | Msa1028010:intron | 50.0% | |
| ACCTCTTCCCTCTCTTACTG+AGG | - | chr7_1:60558962-60558981 | Msa1028010:intron | 50.0% | |
| TCCTCAGTAAGAGAGGGAAG+AGG | + | chr7_1:60558966-60558985 | None:intergenic | 50.0% | |
| CTGACTCCAAGAAAGGTTCC+AGG | + | chr7_1:60559120-60559139 | None:intergenic | 50.0% | |
| GAACCTTTCTTGGAGTCAGC+TGG | - | chr7_1:60559121-60559140 | Msa1028010:CDS | 50.0% | |
| AGGCACCAAAGGTGATTGGT+AGG | + | chr7_1:60559156-60559175 | None:intergenic | 50.0% | |
| ATGGGTTCCACTCGCTCAGA+TGG | - | chr7_1:60555949-60555968 | Msa1028010:CDS | 55.0% | |
| TTGTCAGGGGCAACACCAAG+AGG | - | chr7_1:60557108-60557127 | Msa1028010:intron | 55.0% | |
| GGTGGAGAAGAACCTGCAAG+TGG | + | chr7_1:60557194-60557213 | None:intergenic | 55.0% | |
| GCACCTCAGCCTGCATTTGA+AGG | + | chr7_1:60558380-60558399 | None:intergenic | 55.0% | |
| ! | CAGCCAGCTGACTCCAAGAA+AGG | + | chr7_1:60559127-60559146 | None:intergenic | 55.0% |
| GGCAGAGCCATCTGAGCGAG+TGG | + | chr7_1:60555959-60555978 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 60555949 | 60559190 | 60555949 | ID=Msa1028010;Name=Msa1028010 |
| chr7_1 | mRNA | 60555949 | 60559190 | 60555949 | ID=Msa1028010-mRNA-1;Parent=Msa1028010;Name=Msa1028010-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|6|0|238 |
| chr7_1 | exon | 60559079 | 60559190 | 60559079 | ID=Msa1028010-mRNA-1:exon:12608;Parent=Msa1028010-mRNA-1 |
| chr7_1 | exon | 60557939 | 60558024 | 60557939 | ID=Msa1028010-mRNA-1:exon:12607;Parent=Msa1028010-mRNA-1 |
| chr7_1 | exon | 60557020 | 60557059 | 60557020 | ID=Msa1028010-mRNA-1:exon:12606;Parent=Msa1028010-mRNA-1 |
| chr7_1 | exon | 60556865 | 60556922 | 60556865 | ID=Msa1028010-mRNA-1:exon:12605;Parent=Msa1028010-mRNA-1 |
| chr7_1 | exon | 60556714 | 60556783 | 60556714 | ID=Msa1028010-mRNA-1:exon:12604;Parent=Msa1028010-mRNA-1 |
| chr7_1 | exon | 60555949 | 60556299 | 60555949 | ID=Msa1028010-mRNA-1:exon:12603;Parent=Msa1028010-mRNA-1 |
| chr7_1 | CDS | 60559079 | 60559190 | 60559079 | ID=Msa1028010-mRNA-1:cds;Parent=Msa1028010-mRNA-1 |
| chr7_1 | CDS | 60557939 | 60558024 | 60557939 | ID=Msa1028010-mRNA-1:cds;Parent=Msa1028010-mRNA-1 |
| chr7_1 | CDS | 60557020 | 60557059 | 60557020 | ID=Msa1028010-mRNA-1:cds;Parent=Msa1028010-mRNA-1 |
| chr7_1 | CDS | 60556865 | 60556922 | 60556865 | ID=Msa1028010-mRNA-1:cds;Parent=Msa1028010-mRNA-1 |
| chr7_1 | CDS | 60556714 | 60556783 | 60556714 | ID=Msa1028010-mRNA-1:cds;Parent=Msa1028010-mRNA-1 |
| chr7_1 | CDS | 60555949 | 60556299 | 60555949 | ID=Msa1028010-mRNA-1:cds;Parent=Msa1028010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
