AlfalfaGEDB | Msa1028440

M. sativa cultivar zhongmu-4 / Msa1028440

KEGG: K04733
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1028440	XP_003624053.1	97.963	491	10	0	1	491	1	491	0.0	986

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1028440	sp\|Q3EDL4\|Y1154_ARATH	76.444	450	89	8	1	445	1	438	0.0	695

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1028440	G7L6L4	97.963	491	10	0	1	491	1	491	0.0	986

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1028440	MtrunA17_Chr7g0248491	97.963	491	10	0	1	491	1	491	0.0	986
Msa1028440	MtrunA17_Chr8g0348451	73.374	492	107	7	1	488	1	472	0.0	688
Msa1028440	MtrunA17_Chr5g0402071	63.124	461	142	4	1	444	1	450	0.0	563
Msa1028440	MtrunA17_Chr3g0144551	58.508	429	151	6	17	445	17	418	1.32e-173	496
Msa1028440	MtrunA17_Chr5g0443121	55.932	472	178	7	9	453	7	475	1.30e-171	493
Msa1028440	MtrunA17_Chr4g0069251	49.016	508	222	8	9	491	5	500	8.02e-170	488
Msa1028440	MtrunA17_Chr7g0271451	54.468	470	174	7	6	436	2	470	8.13e-170	488
Msa1028440	MtrunA17_Chr3g0096351	54.071	479	176	5	9	454	7	474	3.09e-168	484
Msa1028440	MtrunA17_Chr4g0034931	71.661	307	87	0	139	445	118	424	4.09e-167	479
Msa1028440	MtrunA17_Chr2g0302631	50.199	502	191	7	9	467	5	490	6.34e-162	468

Showing 1 to 10 of 504 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1028440	AT1G01540.2	76.444	450	89	8	1	445	1	438	0.0	695
Msa1028440	AT4G01330.1	73.085	483	114	7	1	476	3	476	0.0	694
Msa1028440	AT4G01330.2	72.934	484	114	7	1	476	3	477	0.0	692
Msa1028440	AT4G01330.3	76.286	447	93	5	1	441	3	442	0.0	683
Msa1028440	AT1G01540.1	76.658	377	71	8	1	372	1	365	0.0	566
Msa1028440	AT4G02630.1	60.736	489	166	7	3	477	1	477	0.0	556
Msa1028440	AT4G34500.1	58.998	439	157	8	18	451	17	437	6.28e-174	496
Msa1028440	AT2G42960.3	54.371	469	174	6	9	445	7	467	7.08e-167	481
Msa1028440	AT2G42960.5	54.371	469	174	6	9	445	7	467	7.08e-167	481
Msa1028440	AT2G42960.4	54.371	469	174	6	9	445	7	467	7.08e-167	481

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 162 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTAGAGGTAGAAGCAAT+TGG	0.488915	7_1:-61286903	Msa1028440:CDS
AAATAGTGGAAGAGAATAAA+TGG	0.258438	7_1:+61289076	None:intergenic
AAATCTGATAAGGTTTCAAG+TGG	0.607449	7_1:-61288505	Msa1028440:CDS
AAATTGGGGTTGGTTACAAG+AGG	0.607874	7_1:+61285021	None:intergenic
AAATTTGAGTCCTCAAGCTC+TGG	0.464492	7_1:+61285277	None:intergenic
AACATACATTATGGAATAAG+AGG	0.476476	7_1:+61285593	None:intergenic
AACTCCAAGGTTTCTGATTT+CGG	0.204899	7_1:-61286427	Msa1028440:CDS
AAGAGTGATGTTTATAGCTT+TGG	0.277407	7_1:-61286150	Msa1028440:CDS
AAGCCCGAAATCAGAAACCT+TGG	0.589361	7_1:+61286423	None:intergenic
AATACGCATGAACGTTATAT+TGG	0.258801	7_1:-61286640	Msa1028440:CDS

Showing 1 to 10 of 162 entries

Previous1 2 3 4 5…17Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGTGGTTGTTAAATCTGATA+AGG	-	chr7_1:61285632-61285651	Msa1028440:CDS	30.0%
AAATCTGATAAGGTTTCAAG+TGG	-	chr7_1:61285642-61285661	Msa1028440:CDS	30.0%
GGTTATGGAATTGTTTATCA+TGG	-	chr7_1:61285840-61285859	Msa1028440:intron	30.0%
ATTGATATTGTGTGAATCCA+GGG	-	chr7_1:61286343-61286362	Msa1028440:intron	30.0%
TTGAAGACTTAAAGACAACA+AGG	+	chr7_1:61286571-61286590	None:intergenic	30.0%
TTGAAGACTTAAAGACAACA+AGG	+	chr7_1:61286571-61286590	None:intergenic	30.0%
TATACTGCCCAGAATATATT+TGG	+	chr7_1:61286849-61286868	None:intergenic	30.0%
AAGAGTTATCATTTAAGTGG+GGG	-	chr7_1:61286983-61287002	Msa1028440:intron	30.0%
ATTCAACTTTCTGTTAGTGA+AGG	-	chr7_1:61287131-61287150	Msa1028440:intron	30.0%
TGAGAAAGAATTCAAAGTAG+AGG	-	chr7_1:61287231-61287250	Msa1028440:intron	30.0%

Showing 1 to 10 of 281 entries

Previous1 2 3 4 5…29Next

Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	61284971	61289198	61284971	ID=Msa1028440;Name=Msa1028440
chr7_1	mRNA	61284971	61289198	61284971	ID=Msa1028440-mRNA-1;Parent=Msa1028440;Name=Msa1028440-mRNA-1;_AED=0.04;_eAED=0.04;_QI=359\|1\|1\|1\|1\|1\|7\|224\|491
chr7_1	exon	61284971	61285347	61284971	ID=Msa1028440-mRNA-1:exon:12886;Parent=Msa1028440-mRNA-1
chr7_1	exon	61285600	61285809	61285600	ID=Msa1028440-mRNA-1:exon:12885;Parent=Msa1028440-mRNA-1
chr7_1	exon	61286086	61286215	61286086	ID=Msa1028440-mRNA-1:exon:12884;Parent=Msa1028440-mRNA-1
chr7_1	exon	61286364	61286534	61286364	ID=Msa1028440-mRNA-1:exon:12883;Parent=Msa1028440-mRNA-1
chr7_1	exon	61286627	61286749	61286627	ID=Msa1028440-mRNA-1:exon:12882;Parent=Msa1028440-mRNA-1
chr7_1	exon	61286843	61286947	61286843	ID=Msa1028440-mRNA-1:exon:12881;Parent=Msa1028440-mRNA-1
chr7_1	exon	61288256	61289198	61288256	ID=Msa1028440-mRNA-1:exon:12880;Parent=Msa1028440-mRNA-1
chr7_1	five_prime_UTR	61288840	61289198	61288840	ID=Msa1028440-mRNA-1:five_prime_utr;Parent=Msa1028440-mRNA-1
chr7_1	CDS	61288256	61288839	61288256	ID=Msa1028440-mRNA-1:cds;Parent=Msa1028440-mRNA-1
chr7_1	CDS	61286843	61286947	61286843	ID=Msa1028440-mRNA-1:cds;Parent=Msa1028440-mRNA-1
chr7_1	CDS	61286627	61286749	61286627	ID=Msa1028440-mRNA-1:cds;Parent=Msa1028440-mRNA-1
chr7_1	CDS	61286364	61286534	61286364	ID=Msa1028440-mRNA-1:cds;Parent=Msa1028440-mRNA-1
chr7_1	CDS	61286086	61286215	61286086	ID=Msa1028440-mRNA-1:cds;Parent=Msa1028440-mRNA-1
chr7_1	CDS	61285600	61285809	61285600	ID=Msa1028440-mRNA-1:cds;Parent=Msa1028440-mRNA-1
chr7_1	CDS	61285195	61285347	61285195	ID=Msa1028440-mRNA-1:cds;Parent=Msa1028440-mRNA-1
chr7_1	three_prime_UTR	61284971	61285194	61284971	ID=Msa1028440-mRNA-1:three_prime_utr;Parent=Msa1028440-mRNA-1

Gene Sequence

>Msa1028440

ATGTCGATCTTCGACGGAACATTCCTCAACACACAACTCTCGAAACACACATCGATCTTCGGTCTCCGTTTATGGGTCGTCATCGGAATCTTAATCGGCGTCGCAATCGTCTTCATCCTCTTCTTAATCTCTCTCTGCGTAGTTTCACGTCGCCGTCACCGCCGTACCGTAGACTACAAAATCACCGGAGCTGCACCAGCAAAGGAAATCCAAGAGATAGTGCATGTTCCAGGACCACACATGCTCCGGCGACCAACTTCGGTACCGGAGATCCACGTGGACATTGGAAGACAAGAACATCGTGTGGTTGTTAAATCTGATAAGGTTTCAAGTGGTGAGAGTAAGGGAACAGTGGGAAGCGGGTGTGAAACGACGTCGTCTTTTGGAAGTGGTAGTGTTGGTGGGATTGGTCCTGAAGTGTCACATCTTGGGTGGGGTAGATGGTATACTTTGAGAGAGCTTGAAGATGCAACTGGTGGATTGTGTCCTGAAAATGTTCTTGGTGAAGGTGGTTATGGAATTGTTTATCATGGTGTTCTTACTGATGGTACTAAAGTTGCTGTCAAAAACCTCTTGAATAACAAGGGCCAAGCTGAGAAAGAATTCAAAGTAGAGGTAGAAGCAATTGGTCGAGTACGACACAAAAATCTTGTTAGGCTGCTTGGATATTGTGTTGAAGGGGCCTACAGGATGCTTGTGTATGAATATGTGGACAATGGCAATCTTGAACAGTGGTTGCATGGGGATGTTGGACCTGTAAGCCCTTTGACATGGGAAATACGCATGAACGTTATATTGGGAACAGCCAGAGGATTGGCCTATCTACATGAGGGTCTTGAACCAAAGGTTGTTCACCGAGATGTGAAATCAAGTAACATCCTCCTTGATCGCCAATGGAACTCCAAGGTTTCTGATTTCGGGCTTGCCAAGCTCTTGAATTCCGAGAATAGTTATGTCACGACTCGAGTTATGGGGACATTTGGTTATGTTGCACCAGAATATGCCTGCACTGGAATGCTGACTGAGAAGAGTGATGTTTATAGCTTTGGGATACTAATCATGGAGCTAATTACTGGGAGAAGTCCTGTCGATTATGGTAGACCACAAGGAGAGGTTAATTTAATAGAGTGGTTGAAGACTATGGTTGGTAATAGAAAAGCTGAGGAGGTAGTTGATCCTAAGCTACCTGAGTTGCCATCTTCAAAGGCTCTTAAACGCGCTCTGTTAATCGCTCTTCGGTGTGTTGATCCTGATGCAACAAAGAGGCCTAAAATGGGACATGTGATTCACATGCTCGAGGCAGACGACCTCTTATTCCATAATGATCGCAAAACTGGGGGAGAGTCTTCGCGATCTCTTAATGAGTTTCAACCAGAGCTTGAGGACTCAAATTTGGATAAGAGAACAGATGAAGGAATCAGTGGTCAAAGTGAACATGGTAGTGGTAGAAATAATAATCATCAGTCTAGGAGATGA

Protein sequence

>Msa1028440

MSIFDGTFLNTQLSKHTSIFGLRLWVVIGILIGVAIVFILFLISLCVVSRRRHRRTVDYKITGAAPAKEIQEIVHVPGPHMLRRPTSVPEIHVDIGRQEHRVVVKSDKVSSGESKGTVGSGCETTSSFGSGSVGGIGPEVSHLGWGRWYTLRELEDATGGLCPENVLGEGGYGIVYHGVLTDGTKVAVKNLLNNKGQAEKEFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGPVSPLTWEIRMNVILGTARGLAYLHEGLEPKVVHRDVKSSNILLDRQWNSKVSDFGLAKLLNSENSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMELITGRSPVDYGRPQGEVNLIEWLKTMVGNRKAEEVVDPKLPELPSSKALKRALLIALRCVDPDATKRPKMGHVIHMLEADDLLFHNDRKTGGESSRSLNEFQPELEDSNLDKRTDEGISGQSEHGSGRNNNHQSRR*