AlfalfaGEDB | Msa1028670

M. sativa cultivar zhongmu-4 / Msa1028670

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009505 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0030312 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF01476.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1028670	XP_024626338.1	90.043	693	60	4	1	693	1	684	0.0	1276

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1028670	sp\|Q7X8C5\|WAKLB_ARATH	53.056	409	180	5	291	689	334	740	2.15e-141	434

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1028670	Q2HV73	90.043	693	60	4	1	693	1	684	0.0	1276

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1028670	MtrunA17_Chr7g0248904	90.043	693	60	4	1	693	1	684	0.0	1276
Msa1028670	MtrunA17_Chr7g0248881	71.471	680	182	7	23	693	3	679	0.0	942
Msa1028670	MtrunA17_Chr1g0158231	47.981	421	212	5	266	683	23	439	1.96e-137	411
Msa1028670	MtrunA17_Chr1g0158211	49.497	398	194	4	263	658	43	435	1.82e-136	409
Msa1028670	MtrunA17_Chr1g0158171	47.857	420	209	6	263	678	32	445	3.73e-135	405
Msa1028670	MtrunA17_Chr1g0158251	48.009	427	214	5	261	684	308	729	5.68e-135	414
Msa1028670	MtrunA17_Chr1g0158261	48.333	420	210	5	268	684	305	720	6.87e-135	414
Msa1028670	MtrunA17_Chr1g0158201	50.000	388	189	3	263	648	305	689	1.76e-133	410
Msa1028670	MtrunA17_Chr3g0125431	50.128	391	188	3	260	644	309	698	2.30e-133	410
Msa1028670	MtrunA17_Chr3g0125451	49.873	393	194	3	258	648	306	697	1.14e-132	409

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1028670	AT1G16130.1	53.056	409	180	5	291	689	334	740	2.19e-142	434
Msa1028670	AT1G16120.1	56.000	375	164	1	293	666	350	724	5.83e-142	432
Msa1028670	AT1G16150.1	56.620	355	151	2	301	652	353	707	2.61e-138	424
Msa1028670	AT1G16160.1	56.232	345	147	2	318	658	377	721	5.67e-133	409
Msa1028670	AT1G69730.1	54.424	373	162	3	299	663	374	746	5.78e-133	411
Msa1028670	AT1G79670.2	57.514	346	144	2	303	645	313	658	9.01e-132	405
Msa1028670	AT1G79670.1	57.514	346	144	2	303	645	350	695	2.26e-131	405
Msa1028670	AT1G21230.1	49.751	402	193	4	262	657	295	693	1.50e-129	400
Msa1028670	AT1G21270.1	50.125	399	193	4	262	657	294	689	1.53e-127	395
Msa1028670	AT1G19390.1	54.278	374	167	3	297	666	376	749	3.76e-127	396

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Find 132 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTGATACATTCTTTC+GGG	0.258101	7_1:+61806757	Msa1028670:CDS
AAAAGTACCTCCTACTGCTG+TGG	0.648974	7_1:-61808405	None:intergenic
AAAGTTTGACAATGTTCCTG+TGG	0.638617	7_1:-61808088	None:intergenic
AACAATGAAAGAGGTTTCAA+TGG	0.474803	7_1:+61808715	Msa1028670:CDS
AACATTCAATGATGAAGACG+AGG	0.630837	7_1:+61808535	Msa1028670:CDS
AACTGTTAAGTCTATTGGAG+AGG	0.591508	7_1:+61806964	Msa1028670:CDS
AAGAGTGACGTATATAGTTT+CGG	0.467998	7_1:+61808473	Msa1028670:CDS
AAGGAGAGCGAGTATTCGTA+AGG	0.563200	7_1:+61807791	Msa1028670:CDS
AAGGCGACTTTCCCATGAAA+GGG	0.508564	7_1:-61808210	None:intergenic
AAGTCTATTGGAGAGGCTTA+TGG	0.348345	7_1:+61806971	Msa1028670:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCAATTCATTCTTAAGTTTC+AGG	+	chr7_1:61806549-61806568	Msa1028670:CDS	30.0%
ACAATGATTGTTCTATTGGA+AGG	-	chr7_1:61806677-61806696	None:intergenic	30.0%
AAGTGTAAGTAGTGTTATGT+TGG	-	chr7_1:61806733-61806752	None:intergenic	30.0%
AAAAGCTGATACATTCTTTC+GGG	+	chr7_1:61806757-61806776	Msa1028670:CDS	30.0%
AACTAGACATTGGATTTCTA+AGG	+	chr7_1:61807328-61807347	Msa1028670:intron	30.0%
ATTAATCTAACAACCAAGAG+TGG	+	chr7_1:61807546-61807565	Msa1028670:intron	30.0%
TTCGTAAGGAAAAGTTATTC+AGG	+	chr7_1:61807805-61807824	Msa1028670:CDS	30.0%
GAAAAGTTATTCAGGCAAAA+CGG	+	chr7_1:61807813-61807832	Msa1028670:CDS	30.0%
CAAGAGAAGTTATCATCTTA+TGG	+	chr7_1:61807849-61807868	Msa1028670:CDS	30.0%
ATCTTATGGAAATGGAGAAA+TGG	+	chr7_1:61807863-61807882	Msa1028670:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	61806323	61808901	61806323	ID=Msa1028670;Name=Msa1028670
chr7_1	mRNA	61806323	61808901	61806323	ID=Msa1028670-mRNA-1;Parent=Msa1028670;Name=Msa1028670-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0\|1\|0\|1\|1\|1\|2\|0\|693
chr7_1	exon	61806323	61807223	61806323	ID=Msa1028670-mRNA-1:exon:13049;Parent=Msa1028670-mRNA-1
chr7_1	exon	61807721	61808901	61807721	ID=Msa1028670-mRNA-1:exon:13050;Parent=Msa1028670-mRNA-1
chr7_1	CDS	61806323	61807223	61806323	ID=Msa1028670-mRNA-1:cds;Parent=Msa1028670-mRNA-1
chr7_1	CDS	61807721	61808901	61807721	ID=Msa1028670-mRNA-1:cds;Parent=Msa1028670-mRNA-1

Gene Sequence

>Msa1028670

ATGAATACATTGGATCTTAAACTACACCTCAAAATTGAAGTGCAACTCATCAAACTCATGAAGTTTCTTTATCTTTACATTCTCTCCACAATCCTTCTCTTGTGTATGTTACCTCACTCAATATACTGCCAACAATCATTGCTTAACACCACTGTCACTATTGGTTGCCCAGCAGACAACCCTTCAGCACCAAAAGGATACCTATGCAATAGTCCTCAAAAATCATGCAATTCATTCTTAAGTTTCAGGTCAAAATTTCCTTATTACAGCCCTGTAAGTATTGCTTACCTTCTTGGAAATGAAGCATCAACCATAGCTTCAATCAACAATATCTCAATAAATGAAACAATTCCTTCCAATAGAACAATCATTGTCCCTATCTCGTGCTCATGTTCTGGAAATATCTACCAACATAACACTACTTACACTTTCCAAAAAGCTGATACATTCTTTCGGGTGTTAAATGAAACTTACCAAAGCCTCACAACATGTCAGGCTTTGATGGATCAGAATCATTATGCTCCTGAAAACATTGTAATTGGAACTCAGATAACAGTTCCAATACTTTGTGCTTGTCCTACAACAAAACAGATGGCGAAAGGGATCACTTCCTTGCTGGTTTACACAGTCAACTATGGTGAAACTGTTAAGTCTATTGGAGAGGCTTATGGTGTTGATGAACAAAGCATACTAGAGGCAAATGAGTTGCAAGTGGCACCAAGTGAAAACAGAAGTGTGATTCTCTTTGCGTTGACACCAATATTAGTTCCTCTTAGAGGCAAGAGCTGCAAAGAGGATCCTGATAGTTTCTACTGTACTTGTCCTCATGGATGGCTTGCAGATGGAAGCTGTAATGAATCTCATGGTCAAAAGTTTCCTACCAAACTGGTTGCTGCATTAGGTGTTGGCATTGGTGCTGGCTTTCTGGTATTGTTTCTGCTGTGTTACAGATTATATCAATACATAAAGAAAAGGAGAGCGAGTATTCGTAAGGAAAAGTTATTCAGGCAAAACGGTGGTTACTTGTTACAAGAGAAGTTATCATCTTATGGAAATGGAGAAATGGCAAAGCTTTTTACAGCAGAGGAGCTCCAAAGAGCAACAGATGACTACAACCAAAGTAGGTTTCTTGGTCAAGACGGCTACGGCACAGTGTACAAAGGAATGCTACCAGATGGAACCATAGTCGCAGTTAAAAAGTCAAAACACCTTGACAGAAACCAAATAGAAACTTTTGTCAACGAAGTAGTCATCTTATCTCAGATCAACCACAGGAACATTGTCAAACTTTTAGGTTGTTGTCTTGAGACAGAAACTCCATTACTTGTCTATGAATACATTCACAATGGAACACTTTCCCAGCATATCCATGGGAAAGACCGTGATTCATCCCTTTCATGGGAAAGTCGCCTTAGAATTGCATGTGAGGTTGCCGGAGCAGTGGCATATATGCATTTCTCAGCTTCTATTCCAATCTTCCATAGAGACATAAAACCAAGTAACATACTCCTAGACAATAACTATAGTGCCAAAGTGTCTGACTTTGGAACATCGAGATCAATTCCGTTAGATAAGACTCATTTAACCACAGCAGTAGGAGGTACTTTTGGGTACATGGATCCTGAATATTTTCAGTCAAGTCAATTTACAGATAAGAGTGACGTATATAGTTTCGGTGTGGTGCTTGTTGAGCTTATAACCGGCAGAAAGCCGATAACATTCAATGATGAAGACGAGGGTCAGAATATGACGGCACATTTCATTTCAGCGATGAAGGAAAACCAACTTTCTCAAATTTTAGATAACGCAGTGGTTAAGGAAGCTAGGGAAGATGACATTCTTACTATTGCAAATCTTGCAATGAGATGTTTGAGACTTAATGGTAAGAAAAGGCCAACAATGAAAGAGGTTTCAATGGAATTAGAAGCAGTAAGAAAGGTACAGAGTTCTGTACATATCAAAGATGATCAAGAATCACCAAGTGATGGACAATCACTTAGGCATACAACTAATGATACATTTCATGAGTCTACATCGGAAAGCTTTTCACCATCGTCGCAAATGGAGTCCACATACTTCTAA

Protein sequence

>Msa1028670

MNTLDLKLHLKIEVQLIKLMKFLYLYILSTILLLCMLPHSIYCQQSLLNTTVTIGCPADNPSAPKGYLCNSPQKSCNSFLSFRSKFPYYSPVSIAYLLGNEASTIASINNISINETIPSNRTIIVPISCSCSGNIYQHNTTYTFQKADTFFRVLNETYQSLTTCQALMDQNHYAPENIVIGTQITVPILCACPTTKQMAKGITSLLVYTVNYGETVKSIGEAYGVDEQSILEANELQVAPSENRSVILFALTPILVPLRGKSCKEDPDSFYCTCPHGWLADGSCNESHGQKFPTKLVAALGVGIGAGFLVLFLLCYRLYQYIKKRRASIRKEKLFRQNGGYLLQEKLSSYGNGEMAKLFTAEELQRATDDYNQSRFLGQDGYGTVYKGMLPDGTIVAVKKSKHLDRNQIETFVNEVVILSQINHRNIVKLLGCCLETETPLLVYEYIHNGTLSQHIHGKDRDSSLSWESRLRIACEVAGAVAYMHFSASIPIFHRDIKPSNILLDNNYSAKVSDFGTSRSIPLDKTHLTTAVGGTFGYMDPEYFQSSQFTDKSDVYSFGVVLVELITGRKPITFNDEDEGQNMTAHFISAMKENQLSQILDNAVVKEAREDDILTIANLAMRCLRLNGKKRPTMKEVSMELEAVRKVQSSVHIKDDQESPSDGQSLRHTTNDTFHESTSESFSPSSQMESTYF*