AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1030730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1030730 MtrunA17_Chr7g0251891 93.939 198 2 1 114 301 7 204 3.55e-136 383
Msa1030730 MtrunA17_Chr7g0251881 88.189 127 7 4 2 123 1 124 1.33e-65 202
Msa1030730 MtrunA17_Chr7g0237841 37.931 203 70 5 63 209 507 709 2.52e-31 123
Msa1030730 MtrunA17_Chr5g0432721 49.412 85 42 1 123 207 321 404 1.18e-19 89.4
Msa1030730 MtrunA17_Chr3g0107701 47.059 85 44 1 123 207 338 421 2.17e-19 88.6
Msa1030730 MtrunA17_Chr4g0012861 45.882 85 45 1 123 207 314 397 2.49e-19 88.6
Msa1030730 MtrunA17_Chr2g0281191 39.394 132 61 4 123 239 352 479 2.63e-19 88.2
Msa1030730 MtrunA17_Chr7g0244871 44.578 83 45 1 123 205 12 93 1.15e-18 79.7
Msa1030730 MtrunA17_Chr4g0047031 32.558 172 87 6 63 217 120 279 2.17e-16 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1030730 AT3G26790.1 45.014 351 105 15 1 301 1 313 3.73e-79 243
Msa1030730 AT3G24650.1 38.693 199 70 4 63 209 459 657 6.39e-33 128
Msa1030730 AT1G28300.1 56.701 97 42 0 115 211 162 258 3.25e-31 120
Msa1030730 AT2G30470.1 45.882 85 45 1 123 207 294 377 8.24e-20 90.1
Msa1030730 AT4G32010.1 47.059 85 44 1 123 207 285 368 3.46e-19 88.2
Msa1030730 AT4G32010.2 47.059 85 44 1 123 207 281 364 3.55e-19 88.2
Msa1030730 AT4G21550.2 44.186 86 45 2 123 208 327 409 5.50e-16 78.6
Msa1030730 AT4G21550.1 44.186 86 45 2 123 208 327 409 5.67e-16 78.6
Msa1030730 AT4G21550.3 44.186 86 45 2 123 208 327 409 7.28e-16 78.2
Msa1030730 AT1G13260.1 36.697 109 59 5 118 222 182 284 2.90e-11 63.9

Find 56 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGTTCTTCAACTCCTTT+TGG 0.172423 7_1:-64946732 None:intergenic
TGCTTTGTTACAGGTAATTC+AGG 0.263345 7_1:+64947550 Msa1030730:intron
ATTGGATCAGTTGAAACATT+TGG 0.328924 7_1:+64947785 Msa1030730:CDS
ATGACAAACTACTCAAGAAT+TGG 0.349320 7_1:+64947767 Msa1030730:CDS
CTGCATTTGGAACTGTTCAT+AGG 0.379357 7_1:+64944682 Msa1030730:CDS
CCTTCCTTTGACTCAAGAAC+AGG 0.383288 7_1:-64946930 None:intergenic
ACGCTTTGGAGATTCCATTA+TGG 0.386422 7_1:+64947400 Msa1030730:CDS
AACCGAGGCGTGTGGTTTCA+TGG 0.390478 7_1:+64944563 Msa1030730:CDS
ATTATCTTGGTAAACCATAA+TGG 0.391073 7_1:-64947414 None:intergenic
TACATCCGACTGTTATTGTT+AGG 0.408158 7_1:-64947246 None:intergenic
TATCTTTGTTGATGATTATG+AGG 0.427462 7_1:+64947631 Msa1030730:CDS
AGCACACATGGTCTACGCTT+TGG 0.436188 7_1:+64947386 Msa1030730:CDS
TTGTGATCAAGATGAGTATA+TGG 0.437591 7_1:+64947583 Msa1030730:CDS
CCTTCCTGTTCTTGAGTCAA+AGG 0.438008 7_1:+64946926 Msa1030730:CDS
AGAGGTGGAATTGGAGAGAT+TGG 0.443660 7_1:-64944807 None:intergenic
GAACTGTTCATAGGAAGAAA+AGG 0.451838 7_1:+64944691 Msa1030730:CDS
GATAGCAATGATGATGGATG+AGG 0.453480 7_1:+64944509 None:intergenic
GGAGACAACAACAAGATTAA+CGG 0.456096 7_1:+64944624 Msa1030730:CDS
AAAGTAGATAGCAATGATGA+TGG 0.461976 7_1:+64944503 None:intergenic
ATATAGATGGTCTTCATGTA+TGG 0.471743 7_1:+64946973 Msa1030730:CDS
TAGGAGAATGGTGTTGCCTA+AGG 0.474134 7_1:+64946768 Msa1030730:CDS
ATGTATGGAGTTTCAAGTAC+AGG 0.489515 7_1:+64946988 Msa1030730:CDS
GAGGCGTGTGGTTTCATGGC+AGG 0.489847 7_1:+64944567 Msa1030730:CDS
CTCAGCATGAATGATATAGA+TGG 0.492894 7_1:+64946960 Msa1030730:CDS
TCACTTGATGACTTCTATTG+AGG 0.496600 7_1:+64947824 Msa1030730:CDS
GAGACAACAACAAGATTAAC+GGG 0.496732 7_1:+64944625 Msa1030730:CDS
ATGCTTGTATCATTCATTGC+AGG 0.499638 7_1:-64947683 None:intergenic
TAGGCAACACCATTCTCCTA+AGG 0.515359 7_1:-64946765 None:intergenic
AGATTAACGGGTCGGGTCAA+CGG 0.518369 7_1:+64944637 Msa1030730:CDS
TGCCATGAAACCACACGCCT+CGG 0.521021 7_1:-64944565 None:intergenic
TGTTAGCTCCCTTAGGAGAA+TGG 0.536299 7_1:+64946756 Msa1030730:CDS
AACAACAAGATTAACGGGTC+GGG 0.538395 7_1:+64944630 Msa1030730:CDS
GCAGGTGTTGAAGATGAGCT+AGG 0.542163 7_1:+64944585 Msa1030730:CDS
GGAGACTTTGTTAGCACACA+TGG 0.544519 7_1:+64947374 Msa1030730:intron
CTAGGGTTTGTCAACGTGAA+AGG 0.547478 7_1:+64944603 Msa1030730:CDS
CCTGTTCTTGAGTCAAAGGA+AGG 0.552566 7_1:+64946930 Msa1030730:CDS
ATAGGAAGAAAAGGATGGCT+AGG 0.560627 7_1:+64944700 Msa1030730:CDS
ATAGCAATGATGATGGATGA+GGG 0.562602 7_1:+64944510 None:intergenic
TTTAGGAAATCGATCATAGG+AGG 0.568666 7_1:+64946695 Msa1030730:intron
CAGCAGCAACAAAACCATGA+TGG 0.571057 7_1:-64944662 None:intergenic
CAGGTGTTGAAGATGAGCTA+GGG 0.582773 7_1:+64944586 Msa1030730:CDS
ACAGTGATGTTAGCTCCCTT+AGG 0.583324 7_1:+64946749 Msa1030730:CDS
CAACAACAAGATTAACGGGT+CGG 0.589401 7_1:+64944629 Msa1030730:CDS
TCGGGTCAACGGATCCATCA+TGG 0.595667 7_1:+64944648 Msa1030730:CDS
AGAAGGTAAGAAGAAAGTTG+TGG 0.604435 7_1:+64944533 Msa1030730:CDS
AGGCAACACCATTCTCCTAA+GGG 0.607377 7_1:-64946764 None:intergenic
ATGATGATGGATGAGGGAGA+AGG 0.610410 7_1:+64944516 Msa1030730:CDS
TGGAGAGATTGGCACGTGCG+AGG 0.625104 7_1:-64944796 None:intergenic
GTTCAGAAAACCGAGGCGTG+TGG 0.632033 7_1:+64944555 Msa1030730:CDS
TGTTCATAGGAAGAAAAGGA+TGG 0.632115 7_1:+64944695 Msa1030730:CDS
AAGTGGTGAATCATTTGAGA+TGG 0.633283 7_1:-64947726 None:intergenic
TAACTTGCAGAAAGCAGCAG+AGG 0.635910 7_1:+64946899 Msa1030730:intron
ATGTATGTACTTGAAAACAC+TGG 0.640244 7_1:+64947264 Msa1030730:CDS
TTTGGCCTAACAATAACAGT+CGG 0.655066 7_1:+64947241 Msa1030730:CDS
CCTTTGACTCAAGAACAGGA+AGG 0.681338 7_1:-64946926 None:intergenic
AGTTGTGGTTCAGAAAACCG+AGG 0.753509 7_1:+64944548 Msa1030730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATTTATTATATTATA+AGG - chr7_1:64946878-64946897 None:intergenic 0.0%
!! TAAAAAAAAAAAAAACTTCT+TGG - chr7_1:64945171-64945190 None:intergenic 10.0%
!!! TTTTTATACATATTATTACT+TGG - chr7_1:64945521-64945540 None:intergenic 10.0%
!! AGTAATAATATGTATAAAAA+TGG + chr7_1:64945521-64945540 Msa1030730:intron 10.0%
!! AAAATCTATACAATTAACAT+CGG - chr7_1:64945018-64945037 None:intergenic 15.0%
!!! TTTTTTTTTTTGACAATTCT+TGG - chr7_1:64945139-64945158 None:intergenic 15.0%
!!! AAAGATTAATCTTTTGAATT+GGG + chr7_1:64945224-64945243 Msa1030730:intron 15.0%
!! ATATGTATAAAAATGGAAAA+AGG + chr7_1:64945528-64945547 Msa1030730:intron 15.0%
!!! TGAATGAATAAACATTATTT+TGG - chr7_1:64945633-64945652 None:intergenic 15.0%
!! TGTTAATTAATACTATTCAT+CGG + chr7_1:64945691-64945710 Msa1030730:intron 15.0%
!! GATATAAATATAATACTGTA+TGG + chr7_1:64946501-64946520 Msa1030730:intron 15.0%
!! AAATTAGTTAATACCATAAA+TGG + chr7_1:64946650-64946669 Msa1030730:intron 15.0%
!!! ATTATATTATAAGGTTTTGA+TGG - chr7_1:64946869-64946888 None:intergenic 15.0%
!!! TTCATTCTGAATTTATTTTA+TGG - chr7_1:64947051-64947070 None:intergenic 15.0%
!! AAATTTAATGCAATTACATT+CGG + chr7_1:64947069-64947088 Msa1030730:intron 15.0%
!!! ATTGTATTTTAAAGTCAATT+TGG + chr7_1:64947174-64947193 Msa1030730:intron 15.0%
!!! TTGTATTTTAAAGTCAATTT+GGG + chr7_1:64947175-64947194 Msa1030730:intron 15.0%
!!! TTAGTTTGTTAAATATTTTC+AGG + chr7_1:64947353-64947372 Msa1030730:intron 15.0%
!! CAATTCAAAAGATTAATCTT+TGG - chr7_1:64945225-64945244 None:intergenic 20.0%
!!! CAAAGATTAATCTTTTGAAT+TGG + chr7_1:64945223-64945242 Msa1030730:intron 20.0%
!! ATAATTAAATAAAAGGGAAG+TGG + chr7_1:64945384-64945403 Msa1030730:intron 20.0%
!!! AAGTAATGCTTATAGAATTT+TGG + chr7_1:64945736-64945755 Msa1030730:intron 20.0%
!!! ATTTTAGAAGTCCATTTTAT+GGG + chr7_1:64945852-64945871 Msa1030730:intron 20.0%
!!! AATTACGAAAGTTGATTTTA+CGG + chr7_1:64946150-64946169 Msa1030730:intron 20.0%
!! AATTTGTGTATTTCAAGATA+AGG + chr7_1:64946412-64946431 Msa1030730:intron 20.0%
!!! ACAATTTTCATTCTGTTTTT+AGG + chr7_1:64946678-64946697 Msa1030730:intron 20.0%
!!! ATTTTTGAGATGAATAGTGA+TGG - chr7_1:64944748-64944767 None:intergenic 25.0%
!! TTTTTATTATCTGTCCTAGT+TGG + chr7_1:64944911-64944930 Msa1030730:intron 25.0%
! TACTAGTAGTTTGATCTTAA+TGG + chr7_1:64945076-64945095 Msa1030730:intron 25.0%
!! TTATCTTCATTTTCTTGTGT+GGG - chr7_1:64945331-64945350 None:intergenic 25.0%
!! TTTATCTTCATTTTCTTGTG+TGG - chr7_1:64945332-64945351 None:intergenic 25.0%
! TGTATAAAAATGGAAAAAGG+AGG + chr7_1:64945531-64945550 Msa1030730:intron 25.0%
! ATAGTTAAACCAAAAAGACA+AGG - chr7_1:64945765-64945784 None:intergenic 25.0%
! AATTCAGAAGTCTATTCTAT+GGG + chr7_1:64945803-64945822 Msa1030730:intron 25.0%
!!! CATTTTAGAAGTCCATTTTA+TGG + chr7_1:64945851-64945870 Msa1030730:intron 25.0%
!!! ATTTCGAAAGTCGATTTTAT+TGG + chr7_1:64946085-64946104 Msa1030730:intron 25.0%
!!! ATTACGAAAGTTGATTTTAC+GGG + chr7_1:64946151-64946170 Msa1030730:intron 25.0%
! AAACAGAATGAAAATTGTCA+AGG - chr7_1:64946676-64946695 None:intergenic 25.0%
! GAAATTAAGTCTATAAGCAA+AGG - chr7_1:64946799-64946818 None:intergenic 25.0%
! ATTATCTTGGTAAACCATAA+TGG - chr7_1:64947417-64947436 None:intergenic 25.0%
! AATTGTGATTGTGATTATCT+TGG - chr7_1:64947430-64947449 None:intergenic 25.0%
!!! TATCTTTGTTGATGATTATG+AGG + chr7_1:64947631-64947650 Msa1030730:CDS 25.0%
!!! AGTTTTTTGCAAATCCAACT+AGG - chr7_1:64944928-64944947 None:intergenic 30.0%
ATAAAAATGGAAAAAGGAGG+AGG + chr7_1:64945534-64945553 Msa1030730:intron 30.0%
!! TTTTAACTCTTAGCTAGAAG+AGG + chr7_1:64945558-64945577 Msa1030730:intron 30.0%
CAATTCAGAAGTCTATTCTA+TGG + chr7_1:64945802-64945821 Msa1030730:intron 30.0%
! AATTCAGAAGTCGATTTCAT+AGG + chr7_1:64945938-64945957 Msa1030730:intron 30.0%
GGTCAACTATATCATGTATA+CGG + chr7_1:64945959-64945978 Msa1030730:intron 30.0%
!! ATTTCGGAAGTCGATTTTAT+GGG + chr7_1:64946036-64946055 Msa1030730:intron 30.0%
!! AAGTCGATTTTATTGGTCAA+CGG + chr7_1:64946092-64946111 Msa1030730:intron 30.0%
!! ATAAGAGCATCAAAGAGTTA+CGG - chr7_1:64946477-64946496 None:intergenic 30.0%
AAAATTGTCAAGGCCATTTA+TGG - chr7_1:64946666-64946685 None:intergenic 30.0%
!! GTTTTTAGGAAATCGATCAT+AGG + chr7_1:64946692-64946711 Msa1030730:intron 30.0%
ATATAGATGGTCTTCATGTA+TGG + chr7_1:64946973-64946992 Msa1030730:CDS 30.0%
GTCAATCATTCTTTATCTGA+CGG - chr7_1:64947143-64947162 None:intergenic 30.0%
ATTTGGGCGAATTCATAATA+CGG + chr7_1:64947191-64947210 Msa1030730:intron 30.0%
CATTTCTATTTCAATACTGC+AGG + chr7_1:64947217-64947236 Msa1030730:intron 30.0%
! TATTTCAATACTGCAGGTTT+TGG + chr7_1:64947223-64947242 Msa1030730:intron 30.0%
ATGTATGTACTTGAAAACAC+TGG + chr7_1:64947264-64947283 Msa1030730:CDS 30.0%
TGAGCTTAACAAGAAAACTA+AGG + chr7_1:64947455-64947474 Msa1030730:intron 30.0%
GAGCTTAACAAGAAAACTAA+GGG + chr7_1:64947456-64947475 Msa1030730:intron 30.0%
AGCTTAACAAGAAAACTAAG+GGG + chr7_1:64947457-64947476 Msa1030730:intron 30.0%
ATGACAGGAAAAAAAATACG+TGG - chr7_1:64947529-64947548 None:intergenic 30.0%
TTGTGATCAAGATGAGTATA+TGG + chr7_1:64947583-64947602 Msa1030730:CDS 30.0%
!!! TGATTCACCACTTGATTTTT+TGG + chr7_1:64947736-64947755 Msa1030730:CDS 30.0%
!!! GATTCACCACTTGATTTTTT+GGG + chr7_1:64947737-64947756 Msa1030730:CDS 30.0%
ATGACAAACTACTCAAGAAT+TGG + chr7_1:64947767-64947786 Msa1030730:CDS 30.0%
ATTGGATCAGTTGAAACATT+TGG + chr7_1:64947785-64947804 Msa1030730:CDS 30.0%
AGAAGGTAAGAAGAAAGTTG+TGG + chr7_1:64944533-64944552 Msa1030730:CDS 35.0%
GGAGACAACAACAAGATTAA+CGG + chr7_1:64944624-64944643 Msa1030730:CDS 35.0%
GAGACAACAACAAGATTAAC+GGG + chr7_1:64944625-64944644 Msa1030730:CDS 35.0%
GAACTGTTCATAGGAAGAAA+AGG + chr7_1:64944691-64944710 Msa1030730:CDS 35.0%
TGTTCATAGGAAGAAAAGGA+TGG + chr7_1:64944695-64944714 Msa1030730:CDS 35.0%
GTAGTAGTAGTAGTAGAAGA+AGG - chr7_1:64944774-64944793 None:intergenic 35.0%
GAATGAAAAAGAGGTGGAAT+TGG - chr7_1:64944819-64944838 None:intergenic 35.0%
AAGAACTTCGTCATCTATTG+TGG - chr7_1:64945255-64945274 None:intergenic 35.0%
!! CAACGGTGTTAAGTCATTTT+AGG - chr7_1:64945278-64945297 None:intergenic 35.0%
GGGTGTGTATAAATTAGTGT+AGG - chr7_1:64945311-64945330 None:intergenic 35.0%
ATAAAAGGGAAGTGGATGTA+TGG + chr7_1:64945392-64945411 Msa1030730:intron 35.0%
TAAAAGGGAAGTGGATGTAT+GGG + chr7_1:64945393-64945412 Msa1030730:intron 35.0%
!! TTTTGGTGACCTTGTCTTTT+TGG + chr7_1:64945753-64945772 Msa1030730:intron 35.0%
! AAGTCCATTTTATGGGTCAA+CGG + chr7_1:64945859-64945878 Msa1030730:intron 35.0%
CACGTATATGCTACTCATTT+CGG + chr7_1:64945885-64945904 Msa1030730:intron 35.0%
TATATGCTACTCATTTCGGA+AGG + chr7_1:64945889-64945908 Msa1030730:intron 35.0%
! ATTTCGGAAGGCGATTTTAT+GGG + chr7_1:64945987-64946006 Msa1030730:intron 35.0%
!! CATTTCGGAAGTCGATTTTA+TGG + chr7_1:64946035-64946054 Msa1030730:intron 35.0%
!! AAGTTGATTTTACGGGTCAA+CGG + chr7_1:64946158-64946177 Msa1030730:intron 35.0%
ATCGAGTCGATCTAAGTTAT+TGG - chr7_1:64946281-64946300 None:intergenic 35.0%
AGATTTAGGGAACCAAAAGT+GGG - chr7_1:64946379-64946398 None:intergenic 35.0%
AAGATTTAGGGAACCAAAAG+TGG - chr7_1:64946380-64946399 None:intergenic 35.0%
!!! CTTTTGGTTCCCTAAATCTT+TGG + chr7_1:64946380-64946399 Msa1030730:intron 35.0%
ACTCTTTGATGCTCTTATGT+TGG + chr7_1:64946479-64946498 Msa1030730:intron 35.0%
AGTCAATGCTGCAAAAAGTT+GGG - chr7_1:64946597-64946616 None:intergenic 35.0%
TAGTCAATGCTGCAAAAAGT+TGG - chr7_1:64946598-64946617 None:intergenic 35.0%
TTTAGGAAATCGATCATAGG+AGG + chr7_1:64946695-64946714 Msa1030730:intron 35.0%
! GTTGAGATTCCTTTTCCAAA+AGG + chr7_1:64946717-64946736 Msa1030730:CDS 35.0%
!! TCTTCAACTCCTTTTGGAAA+AGG - chr7_1:64946729-64946748 None:intergenic 35.0%
CTCAGCATGAATGATATAGA+TGG + chr7_1:64946960-64946979 Msa1030730:CDS 35.0%
! ATGTATGGAGTTTCAAGTAC+AGG + chr7_1:64946988-64947007 Msa1030730:CDS 35.0%
TTTGGCCTAACAATAACAGT+CGG + chr7_1:64947241-64947260 Msa1030730:CDS 35.0%
TACATCCGACTGTTATTGTT+AGG - chr7_1:64947249-64947268 None:intergenic 35.0%
! TGCTTTGTTACAGGTAATTC+AGG + chr7_1:64947550-64947569 Msa1030730:intron 35.0%
ATGCTTGTATCATTCATTGC+AGG - chr7_1:64947686-64947705 None:intergenic 35.0%
AAGTGGTGAATCATTTGAGA+TGG - chr7_1:64947729-64947748 None:intergenic 35.0%
! CAACAACAAGATTAACGGGT+CGG + chr7_1:64944629-64944648 Msa1030730:CDS 40.0%
! AACAACAAGATTAACGGGTC+GGG + chr7_1:64944630-64944649 Msa1030730:CDS 40.0%
! CTGCATTTGGAACTGTTCAT+AGG + chr7_1:64944682-64944701 Msa1030730:CDS 40.0%
ATAGGAAGAAAAGGATGGCT+AGG + chr7_1:64944700-64944719 Msa1030730:CDS 40.0%
AGAAAAAAACTCACACGTGC+GGG - chr7_1:64944849-64944868 None:intergenic 40.0%
GAGAAAAAAACTCACACGTG+CGG - chr7_1:64944850-64944869 None:intergenic 40.0%
GTGTAGGTCTGAGAATACAA+CGG - chr7_1:64945295-64945314 None:intergenic 40.0%
AGGCAGAATCTATGTCTGTA+CGG + chr7_1:64945578-64945597 Msa1030730:intron 40.0%
!!! ATTATTTTGGTCATTGCCCG+TGG - chr7_1:64945620-64945639 None:intergenic 40.0%
GATACCGTTGACCCATAAAA+TGG - chr7_1:64945866-64945885 None:intergenic 40.0%
CATGTATACGGCACTCATTT+CGG + chr7_1:64945971-64945990 Msa1030730:intron 40.0%
! CATTTCGGAAGGCGATTTTA+TGG + chr7_1:64945986-64946005 Msa1030730:intron 40.0%
CATGTATACGCCACTCATTT+CGG + chr7_1:64946020-64946039 Msa1030730:intron 40.0%
! AAATCGACTTCCGAAATGAG+TGG - chr7_1:64946033-64946052 None:intergenic 40.0%
GTCACTTCAAGATGTGATCT+CGG + chr7_1:64946180-64946199 Msa1030730:intron 40.0%
TCACGTGACTTTCGCAAATT+GGG - chr7_1:64946242-64946261 None:intergenic 40.0%
CTTAGTCAATGTCTAGTCCT+TGG + chr7_1:64946341-64946360 Msa1030730:intron 40.0%
! AAGCTGAAAACTCCCACTTT+TGG + chr7_1:64946364-64946383 Msa1030730:intron 40.0%
TTGGTTCCCTAAATCTTTGG+TGG + chr7_1:64946383-64946402 Msa1030730:intron 40.0%
AAAGAGTTACGGTGGTAAAG+AGG - chr7_1:64946466-64946485 None:intergenic 40.0%
! CACTGTTCTTCAACTCCTTT+TGG - chr7_1:64946735-64946754 None:intergenic 40.0%
ATAAGCAAAGGCCAAACCTT+AGG - chr7_1:64946787-64946806 None:intergenic 40.0%
CTGCTATGTGCATACATTGT+TGG + chr7_1:64947012-64947031 Msa1030730:intron 40.0%
!! ACGCTTTGGAGATTCCATTA+TGG + chr7_1:64947400-64947419 Msa1030730:CDS 40.0%
CCTGTAACAAAGCATATGAC+AGG - chr7_1:64947544-64947563 None:intergenic 40.0%
! CCTGTCATATGCTTTGTTAC+AGG + chr7_1:64947541-64947560 Msa1030730:intron 40.0%
!!! TCACCACTTGATTTTTTGGG+TGG + chr7_1:64947740-64947759 Msa1030730:CDS 40.0%
GATCCACCCAAAAAATCAAG+TGG - chr7_1:64947746-64947765 None:intergenic 40.0%
!! ATGATGATGGATGAGGGAGA+AGG + chr7_1:64944516-64944535 Msa1030730:CDS 45.0%
AGTTGTGGTTCAGAAAACCG+AGG + chr7_1:64944548-64944567 Msa1030730:CDS 45.0%
!! CAGGTGTTGAAGATGAGCTA+GGG + chr7_1:64944586-64944605 Msa1030730:CDS 45.0%
CTAGGGTTTGTCAACGTGAA+AGG + chr7_1:64944603-64944622 Msa1030730:CDS 45.0%
CAGCAGCAACAAAACCATGA+TGG - chr7_1:64944665-64944684 None:intergenic 45.0%
!!! GGTTTTGTTGCTGCTGCATT+TGG + chr7_1:64944669-64944688 Msa1030730:CDS 45.0%
AGAGGTGGAATTGGAGAGAT+TGG - chr7_1:64944810-64944829 None:intergenic 45.0%
GGGAGAGAATGAAAAAGAGG+TGG - chr7_1:64944825-64944844 None:intergenic 45.0%
GGAGGGAGAGAATGAAAAAG+AGG - chr7_1:64944828-64944847 None:intergenic 45.0%
TATACGGCACTCATTTCGGA+AGG + chr7_1:64945975-64945994 Msa1030730:intron 45.0%
TCTCGGTCGTTTGTAGAGAT+TGG + chr7_1:64946197-64946216 Msa1030730:intron 45.0%
CTCACGTGACTTTCGCAAAT+TGG - chr7_1:64946243-64946262 None:intergenic 45.0%
!! TCCCTAAATCTTTGGTGGTG+TGG + chr7_1:64946388-64946407 Msa1030730:intron 45.0%
CCCACACCACCAAAGATTTA+GGG - chr7_1:64946392-64946411 None:intergenic 45.0%
!! CCCTAAATCTTTGGTGGTGT+GGG + chr7_1:64946389-64946408 Msa1030730:intron 45.0%
TCCCACACCACCAAAGATTT+AGG - chr7_1:64946393-64946412 None:intergenic 45.0%
AGGCATGCTAGACAATGCTT+TGG + chr7_1:64946432-64946451 Msa1030730:intron 45.0%
GGCATGCTAGACAATGCTTT+GGG + chr7_1:64946433-64946452 Msa1030730:intron 45.0%
! AGAGCATCAAAGAGTTACGG+TGG - chr7_1:64946474-64946493 None:intergenic 45.0%
ACAGTGATGTTAGCTCCCTT+AGG + chr7_1:64946749-64946768 Msa1030730:CDS 45.0%
TGTTAGCTCCCTTAGGAGAA+TGG + chr7_1:64946756-64946775 Msa1030730:CDS 45.0%
AGGCAACACCATTCTCCTAA+GGG - chr7_1:64946767-64946786 None:intergenic 45.0%
TAGGCAACACCATTCTCCTA+AGG - chr7_1:64946768-64946787 None:intergenic 45.0%
!! TAGGAGAATGGTGTTGCCTA+AGG + chr7_1:64946768-64946787 Msa1030730:CDS 45.0%
!! GAATGGTGTTGCCTAAGGTT+TGG + chr7_1:64946773-64946792 Msa1030730:intron 45.0%
! TAACTTGCAGAAAGCAGCAG+AGG + chr7_1:64946899-64946918 Msa1030730:intron 45.0%
CCTTTGACTCAAGAACAGGA+AGG - chr7_1:64946929-64946948 None:intergenic 45.0%
CCTTCCTGTTCTTGAGTCAA+AGG + chr7_1:64946926-64946945 Msa1030730:CDS 45.0%
CCTTCCTTTGACTCAAGAAC+AGG - chr7_1:64946933-64946952 None:intergenic 45.0%
CCTGTTCTTGAGTCAAAGGA+AGG + chr7_1:64946930-64946949 Msa1030730:CDS 45.0%
TGTAAGCGTGTGACTGTACA+TGG - chr7_1:64947104-64947123 None:intergenic 45.0%
GGAGACTTTGTTAGCACACA+TGG + chr7_1:64947374-64947393 Msa1030730:intron 45.0%
!! AAATACAATAATTAAATAAA+AGG + chr7_1:64945377-64945396 Msa1030730:intron 5.0%
!! AATACAATAATTAAATAAAA+GGG + chr7_1:64945378-64945397 Msa1030730:intron 5.0%
!! GCAGGTGTTGAAGATGAGCT+AGG + chr7_1:64944585-64944604 Msa1030730:CDS 50.0%
! AGATTAACGGGTCGGGTCAA+CGG + chr7_1:64944637-64944656 Msa1030730:CDS 50.0%
AAAAACTCACACGTGCGGGA+GGG - chr7_1:64944845-64944864 None:intergenic 50.0%
AAAAAACTCACACGTGCGGG+AGG - chr7_1:64944846-64944865 None:intergenic 50.0%
TCTGTACGGAATTTGCCTCG+TGG + chr7_1:64945592-64945611 Msa1030730:intron 50.0%
GAATTTGCCTCGTGGATCCA+CGG + chr7_1:64945600-64945619 Msa1030730:intron 50.0%
AATTTGCCTCGTGGATCCAC+GGG + chr7_1:64945601-64945620 Msa1030730:intron 50.0%
! GTGGGAGTTTTCAGCTTCCA+AGG - chr7_1:64946361-64946380 None:intergenic 50.0%
AGCACACATGGTCTACGCTT+TGG + chr7_1:64947386-64947405 Msa1030730:CDS 50.0%
GTTCAGAAAACCGAGGCGTG+TGG + chr7_1:64944555-64944574 Msa1030730:CDS 55.0%
AACCGAGGCGTGTGGTTTCA+TGG + chr7_1:64944563-64944582 Msa1030730:CDS 55.0%
TGCCATGAAACCACACGCCT+CGG - chr7_1:64944568-64944587 None:intergenic 55.0%
TCGGGTCAACGGATCCATCA+TGG + chr7_1:64944648-64944667 Msa1030730:CDS 55.0%
GAGGCGTGTGGTTTCATGGC+AGG + chr7_1:64944567-64944586 Msa1030730:CDS 60.0%
TGGAGAGATTGGCACGTGCG+AGG - chr7_1:64944799-64944818 None:intergenic 60.0%
TCATTGCCCGTGGATCCACG+AGG - chr7_1:64945610-64945629 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 64944516 64947844 64944516 ID=Msa1030730;Name=Msa1030730
chr7_1 mRNA 64944516 64947844 64944516 ID=Msa1030730-mRNA-1;Parent=Msa1030730;Name=Msa1030730-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|6|0|301
chr7_1 exon 64944516 64944854 64944516 ID=Msa1030730-mRNA-1:exon:14315;Parent=Msa1030730-mRNA-1
chr7_1 exon 64946700 64946789 64946700 ID=Msa1030730-mRNA-1:exon:14316;Parent=Msa1030730-mRNA-1
chr7_1 exon 64946909 64947009 64946909 ID=Msa1030730-mRNA-1:exon:14317;Parent=Msa1030730-mRNA-1
chr7_1 exon 64947239 64947285 64947239 ID=Msa1030730-mRNA-1:exon:14318;Parent=Msa1030730-mRNA-1
chr7_1 exon 64947375 64947421 64947375 ID=Msa1030730-mRNA-1:exon:14319;Parent=Msa1030730-mRNA-1
chr7_1 exon 64947563 64947844 64947563 ID=Msa1030730-mRNA-1:exon:14320;Parent=Msa1030730-mRNA-1
chr7_1 CDS 64944516 64944854 64944516 ID=Msa1030730-mRNA-1:cds;Parent=Msa1030730-mRNA-1
chr7_1 CDS 64946700 64946789 64946700 ID=Msa1030730-mRNA-1:cds;Parent=Msa1030730-mRNA-1
chr7_1 CDS 64946909 64947009 64946909 ID=Msa1030730-mRNA-1:cds;Parent=Msa1030730-mRNA-1
chr7_1 CDS 64947239 64947285 64947239 ID=Msa1030730-mRNA-1:cds;Parent=Msa1030730-mRNA-1
chr7_1 CDS 64947375 64947421 64947375 ID=Msa1030730-mRNA-1:cds;Parent=Msa1030730-mRNA-1
chr7_1 CDS 64947563 64947844 64947563 ID=Msa1030730-mRNA-1:cds;Parent=Msa1030730-mRNA-1
Gene Sequence

>Msa1030730

ATGATGATGGATGAGGGAGAAGGTAAGAAGAAAGTTGTGGTTCAGAAAACCGAGGCGTGTGGTTTCATGGCAGGTGTTGAAGATGAGCTAGGGTTTGTCAACGTGAAAGGAGACAACAACAAGATTAACGGGTCGGGTCAACGGATCCATCATGGTTTTGTTGCTGCTGCATTTGGAACTGTTCATAGGAAGAAAAGGATGGCTAGGCAAAGAAGATCTTCATCTTCTACCATCACTATTCATCTCAAAAATCTTCCTTCTTCTACTACTACTACTACTACCTCGCACGTGCCAATCTCTCCAATTCCACCTCTTTTTCATTCTCTCCCTCCCGCACGTGAAATCGATCATAGGAGGTTGAGATTCCTTTTCCAAAAGGAGTTGAAGAACAGTGATGTTAGCTCCCTTAGGAGAATGGTGTTGCCTAAGAAAGCAGCAGAGGCTTTCCTTCCTGTTCTTGAGTCAAAGGAAGGAATTCTTCTCAGCATGAATGATATAGATGGTCTTCATGTATGGAGTTTCAAGTACAGGTTTTGGCCTAACAATAACAGTCGGATGTATGTACTTGAAAACACTGGAGACTTTGTTAGCACACATGGTCTACGCTTTGGAGATTCCATTATGGTAATTCAGGCAAAGAAAGCTTGTGATCAAGATGAGTATATGGAAGAAGCTAATGATACAATCAATCATATCTTTGTTGATGATTATGAGGTGAACAAAAGTTGCTTTGATGTAGCTTATCCTGCAATGAATGATACAAGCATGTCATTTATATATGACACAACCATCTCAAATGATTCACCACTTGATTTTTTGGGTGGATCAATGACAAACTACTCAAGAATTGGATCAGTTGAAACATTTGGCTCTGTTGAGAATCTGTCACTTGATGACTTCTATTGA
Protein sequence

>Msa1030730

MMMDEGEGKKKVVVQKTEACGFMAGVEDELGFVNVKGDNNKINGSGQRIHHGFVAAAFGTVHRKKRMARQRRSSSSTITIHLKNLPSSTTTTTTSHVPISPIPPLFHSLPPAREIDHRRLRFLFQKELKNSDVSSLRRMVLPKKAAEAFLPVLESKEGILLSMNDIDGLHVWSFKYRFWPNNNSRMYVLENTGDFVSTHGLRFGDSIMVIQAKKACDQDEYMEEANDTINHIFVDDYEVNKSCFDVAYPAMNDTSMSFIYDTTISNDSPLDFLGGSMTNYSRIGSVETFGSVENLSLDDFY*