AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1030840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1030840 MtrunA17_Chr7g0252101 72.981 322 80 4 143 463 7 322 4.15e-157 452
Msa1030840 MtrunA17_Chr3g0093911 65.417 240 81 2 222 461 1 238 8.36e-97 295
Msa1030840 MtrunA17_Chr1g0207351 64.167 240 79 4 227 461 17 254 1.20e-89 277
Msa1030840 MtrunA17_Chr4g0075971 55.882 306 117 7 171 461 190 492 2.03e-88 281
Msa1030840 MtrunA17_Chr6g0488101 50.162 309 128 9 173 461 35 337 3.61e-77 248
Msa1030840 MtrunA17_Chr3g0077801 54.098 244 108 4 222 463 1 242 5.52e-76 241
Msa1030840 MtrunA17_Chr6g0488271 50.165 303 125 9 179 461 1 297 9.33e-76 243
Msa1030840 MtrunA17_Chr3g0077901 54.183 251 105 5 218 463 17 262 5.06e-75 239
Msa1030840 MtrunA17_Chr3g0112311 57.661 248 88 8 222 461 1 239 1.22e-71 230
Msa1030840 MtrunA17_Chr3g0077851 55.411 231 93 5 238 463 1 226 1.36e-70 227
Msa1030840 MtrunA17_Chr7g0243331 52.521 238 107 4 226 461 5 238 1.79e-66 217
Msa1030840 MtrunA17_Chr7g0243391 52.315 216 97 4 218 431 14 225 3.67e-54 181
Msa1030840 MtrunA17_Chr1g0209051 61.212 165 56 5 303 463 1 161 3.70e-51 174
Msa1030840 MtrunA17_Chr3g0122991 42.913 254 73 8 224 461 2 199 6.32e-47 163
Msa1030840 MtrunA17_Chr4g0075861 54.011 187 70 5 171 344 190 373 2.77e-46 164
Msa1030840 MtrunA17_Chr1g0206951 66.667 114 37 1 225 338 2 114 3.73e-46 156
Msa1030840 MtrunA17_Chr1g0196231 59.060 149 53 5 219 365 224 366 1.58e-41 151
Msa1030840 MtrunA17_Chr6g0452641 48.341 211 88 8 264 463 23 223 1.43e-38 143
Msa1030840 MtrunA17_Chr3g0123471 52.500 160 58 6 312 463 9 158 9.14e-35 130
Msa1030840 MtrunA17_Chr5g0431721 63.235 68 25 0 152 219 12 79 1.40e-20 87.0
Msa1030840 MtrunA17_Chr7g0238781 40.690 145 68 6 254 390 27 161 8.86e-19 83.2
Msa1030840 MtrunA17_Chr1g0209061 50.538 93 29 3 172 261 29 107 1.97e-18 80.9
Msa1030840 MtrunA17_Chr1g0202841 64.615 65 23 0 397 461 1 65 8.37e-18 81.3
Msa1030840 MtrunA17_Chr1g0187941 64.615 65 23 0 397 461 1 65 3.12e-17 78.2
Msa1030840 MtrunA17_Chr3g0077811 65.909 44 15 0 171 214 32 75 1.88e-11 61.2
Msa1030840 MtrunA17_Chr8g0364231 35.616 146 82 4 126 270 17 151 2.91e-11 66.2
Msa1030840 MtrunA17_Chr1g0205811 47.059 68 27 2 167 234 28 86 3.18e-11 60.5
Msa1030840 MtrunA17_Chr5g0415031 51.562 64 29 1 167 230 57 118 3.50e-11 65.9
Msa1030840 MtrunA17_Chr3g0077891 42.683 82 39 1 133 214 88 161 3.50e-11 62.0
Msa1030840 MtrunA17_Chr3g0077891 53.125 64 28 1 160 223 16 77 7.90e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1030840 AT3G01320.1 50.000 66 31 1 167 232 71 134 1.68e-11 67.4
Msa1030840 AT3G01320.2 50.000 66 31 1 167 232 71 134 1.78e-11 67.4

Find 118 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGGACCAGGGCCGTTCTTT+GGG 0.240364 7_1:-65108210 Msa1030840:CDS
CTTGAAGAAGTAATGGTTCT+TGG 0.256600 7_1:+65103405 None:intergenic
AATTTACTGGAGAAATTTCT+TGG 0.269145 7_1:-65103432 Msa1030840:CDS
GTCTATCAATCTCGATATTC+TGG 0.273495 7_1:-65103074 Msa1030840:CDS
GATGTGCTTGATATCATTTC+CGG 0.278177 7_1:-65103521 Msa1030840:CDS
CCCTTCCTCCGGAGGGAATC+TGG 0.288435 7_1:+65108229 None:intergenic
CAAGCTAAGTACTCTTATAT+TGG 0.315699 7_1:+65102962 None:intergenic
AAGGGACCAGGGCCGTTCTT+TGG 0.315735 7_1:-65108211 Msa1030840:CDS
AGGGAAAGATGAAGCAGTTT+TGG 0.316796 7_1:-65104814 Msa1030840:CDS
GTGTCAATTGGTTTACCAAT+AGG 0.338202 7_1:-65106030 Msa1030840:CDS
TGCACTTGAGTTTCTTCTTA+AGG 0.341291 7_1:-65105148 Msa1030840:CDS
AAAACTCATAAAAGATTTCA+AGG 0.352278 7_1:-65103929 Msa1030840:CDS
GATGACCACTTTCAGTTTGC+CGG 0.363031 7_1:-65103485 Msa1030840:CDS
TTGGCCGGGTGTGCTAATAA+AGG 0.369118 7_1:+65103355 None:intergenic
TAGCTGTGATGAACAACTTT+TGG 0.373016 7_1:-65102865 Msa1030840:CDS
AGCCACCAGAAAGAGAAAAC+AGG 0.376924 7_1:-65104875 Msa1030840:CDS
TGCAAAGAGCTCAACCGAAC+TGG 0.376945 7_1:-65108184 Msa1030840:CDS
TTCAAGAGGACATACCTCTT+TGG 0.379683 7_1:-65108293 Msa1030840:CDS
TGTCAATTGGTTTACCAATA+GGG 0.379759 7_1:-65106029 Msa1030840:CDS
CAGGAAGTGTTGGTGTCAAT+TGG 0.387670 7_1:-65106042 Msa1030840:CDS
TTGAAGAAGTAATGGTTCTT+GGG 0.389487 7_1:+65103406 None:intergenic
CTCTAACGAATTTGTCTTGG+TGG 0.394656 7_1:-65103123 Msa1030840:CDS
AGGGAGGGTTGTTGACTTTG+TGG 0.410514 7_1:-65103021 Msa1030840:CDS
GGACATACCTCTTTGGAAAC+TGG 0.414160 7_1:-65108286 Msa1030840:CDS
CATACTTTAACTTGTTATCA+AGG 0.415630 7_1:+65103962 None:intergenic
ACGGCCCTGGTCCCTTCCTC+CGG 0.420575 7_1:+65108218 None:intergenic
CTCCCAATGTACCACTTTCC+AGG 0.424778 7_1:-65102902 Msa1030840:CDS
GTCATCGATATCTAGTGTTC+CGG 0.429745 7_1:+65103502 None:intergenic
TTGCCGGTGTGTGCAAGAAT+TGG 0.432034 7_1:-65103469 Msa1030840:CDS
AGAGAAAACAAAACGGTGTC+AGG 0.440672 7_1:-65104775 Msa1030840:intron
ACCTTCCTCATCATGCCAAC+TGG 0.443787 7_1:-65103823 Msa1030840:intron
ATCAATCTCGATATTCTGGT+TGG 0.444878 7_1:-65103070 Msa1030840:CDS
TATTCGACAATGGAAAAGTC+AGG 0.454475 7_1:-65103041 Msa1030840:CDS
AATATATGTTGTCACTCATA+AGG 0.454953 7_1:-65102985 Msa1030840:CDS
TCCCTCCGGAGGAAGGGACC+AGG 0.456972 7_1:-65108223 Msa1030840:CDS
GTAGTCAATTTCCCTACCTC+TGG 0.458448 7_1:-65103194 Msa1030840:CDS
CGCTGTTTCCAGATTCCCTC+CGG 0.467820 7_1:-65108237 Msa1030840:CDS
TCAATCTCGATATTCTGGTT+GGG 0.476385 7_1:-65103069 Msa1030840:CDS
GCAGCTCCCTCACTCTTCCT+TGG 0.477319 7_1:+65103881 None:intergenic
AGTTTATTGCTCGAAGATGA+TGG 0.477552 7_1:-65103330 Msa1030840:CDS
TTCTAGCGGTTATTGTGTCA+TGG 0.478420 7_1:-65103273 Msa1030840:CDS
GGGAAAACGGTGAAGAAGGT+AGG 0.482082 7_1:-65103566 Msa1030840:CDS
GACCTGGAAAGTGGTACATT+GGG 0.484680 7_1:+65102900 None:intergenic
TACCACTTTCCAGGTCCCTT+AGG 0.484707 7_1:-65102893 Msa1030840:CDS
AGAGAATTGTCAACTTCCTA+TGG 0.486101 7_1:-65103543 Msa1030840:CDS
CACTCCCCAAAGAACGGCCC+TGG 0.490108 7_1:+65108205 None:intergenic
TTGAGGCCCATCACTTTGAG+AGG 0.490643 7_1:+65108160 None:intergenic
TTAGAATAAGTGAATTATTG+TGG 0.492973 7_1:+65103243 None:intergenic
AGTTTGTTACTTCCAGAGGT+AGG 0.497020 7_1:+65103182 None:intergenic
GTTTGTTACTTCCAGAGGTA+GGG 0.498063 7_1:+65103183 None:intergenic
AAGGATTTGATGACTTTAGC+AGG 0.503082 7_1:-65106061 Msa1030840:CDS
TCACTTTGAGAGGCCCAGTT+CGG 0.504095 7_1:+65108170 None:intergenic
TACACTTCTTGAAGAAGTAA+TGG 0.504305 7_1:+65103398 None:intergenic
GCTGAAAGAATTGATATAAG+AGG 0.511724 7_1:-65103907 Msa1030840:CDS
ATGCTCTAACGAATTTGTCT+TGG 0.512229 7_1:-65103126 Msa1030840:CDS
GTGATACAAAGTAGGGAAAA+CGG 0.519610 7_1:-65103579 Msa1030840:intron
CCCTGGTCCCTTCCTCCGGA+GGG 0.519754 7_1:+65108222 None:intergenic
TCCAGATTCCCTCCGGAGGA+AGG 0.522782 7_1:-65108230 Msa1030840:CDS
GCCCTGGTCCCTTCCTCCGG+AGG 0.523343 7_1:+65108221 None:intergenic
GGATTGCGGCCGTTACAAAT+CGG 0.525282 7_1:-65105065 Msa1030840:CDS
GGACCTGGAAAGTGGTACAT+TGG 0.527736 7_1:+65102899 None:intergenic
ACTTTCCAGGTCCCTTAGGT+TGG 0.529041 7_1:-65102889 Msa1030840:CDS
AGAGTGAGGGAGCTGCTTCA+AGG 0.529263 7_1:-65103874 Msa1030840:CDS
GCAAAGAGCTCAACCGAACT+GGG 0.530895 7_1:-65108183 Msa1030840:CDS
CATCATGGCCATTGTTTCGA+GGG 0.532022 7_1:+65105172 None:intergenic
GAGCTGCTTCAAGGACATCC+AGG 0.532286 7_1:-65103865 Msa1030840:CDS
TCATCATGGCCATTGTTTCG+AGG 0.533555 7_1:+65105171 None:intergenic
ATTTGTAACGGCCGCAATCC+CGG 0.535814 7_1:+65105068 None:intergenic
GGGACCAGGGCCGTTCTTTG+GGG 0.537021 7_1:-65108209 Msa1030840:CDS
CATCACAGCTAACCAACCTA+AGG 0.538273 7_1:+65102877 None:intergenic
AGTAGGGAAAACGGTGAAGA+AGG 0.541106 7_1:-65103570 Msa1030840:intron
AGATGATGGAGTCCCTCGTA+CGG 0.548051 7_1:-65103316 Msa1030840:CDS
AACAGGGAAGAAGAAGAAGA+TGG 0.550626 7_1:-65104858 Msa1030840:CDS
CTTTGGAAACTGGTGTTGAG+AGG 0.556343 7_1:-65108276 Msa1030840:CDS
CCGGTGTGTGCAAGAATTGG+AGG 0.558085 7_1:-65103466 Msa1030840:CDS
TCTAAGTTTGTTACTTCCAG+AGG 0.558528 7_1:+65103178 None:intergenic
TATTCCTTTATTAGCACACC+CGG 0.562264 7_1:-65103359 Msa1030840:CDS
ACACACCGGCAAACTGAAAG+TGG 0.564920 7_1:+65103480 None:intergenic
ATGATATCAAGCACATCCAT+AGG 0.565205 7_1:+65103527 None:intergenic
AACCTAAGGGACCTGGAAAG+TGG 0.565211 7_1:+65102891 None:intergenic
GCCACCAGAAAGAGAAAACA+GGG 0.567497 7_1:-65104874 Msa1030840:CDS
CCAGATTCCCTCCGGAGGAA+GGG 0.571383 7_1:-65108229 Msa1030840:CDS
GAAACTCAAGTGCATCATCA+TGG 0.574862 7_1:+65105157 None:intergenic
TTGGGTTACTTATTCGACAA+TGG 0.575504 7_1:-65103051 Msa1030840:CDS
TGCTAAAAGCAAGCAAGGCA+CGG 0.577996 7_1:+65103150 None:intergenic
ATGAACATCCCTCGAAACAA+TGG 0.578173 7_1:-65105180 Msa1030840:CDS
ACGGAACGTTACCGGGATTG+CGG 0.580598 7_1:-65105079 Msa1030840:CDS
GCATTTGCTAAAAGCAAGCA+AGG 0.585085 7_1:+65103145 None:intergenic
TGTAAGTATGATAACAAGCA+AGG 0.589340 7_1:-65105111 Msa1030840:CDS
CGGCCGTTACAAATCGGTAT+CGG 0.591346 7_1:-65105059 Msa1030840:CDS
ATGACTTTAGCAGGAAGTGT+TGG 0.597169 7_1:-65106052 Msa1030840:CDS
CTCAACACCAGTTTCCAAAG+AGG 0.597416 7_1:+65108279 None:intergenic
ACGAACCAGTTGGCATGATG+AGG 0.598544 7_1:+65103818 None:intergenic
ATTGATATAAGAGGTGTCCA+AGG 0.601739 7_1:-65103898 Msa1030840:CDS
GCTAACCAACCTAAGGGACC+TGG 0.603454 7_1:+65102884 None:intergenic
AGGTGTCCAAGGAAGAGTGA+GGG 0.605251 7_1:-65103887 Msa1030840:CDS
GGAAGAAGAAGAAGATGGAG+CGG 0.607524 7_1:-65104853 Msa1030840:CDS
CCCTCCGGAGGAAGGGACCA+GGG 0.613072 7_1:-65108222 Msa1030840:CDS
GAACCTGTGAGGAAGAAGAT+CGG 0.614062 7_1:-65104901 Msa1030840:intron
CATGGAAAGAGAAAACAAAA+CGG 0.620473 7_1:-65104782 Msa1030840:CDS
TTGAATCTGAATATTAAACC+TGG 0.621609 7_1:+65103847 None:intergenic
ACCAGTTGGCATGATGAGGA+AGG 0.622788 7_1:+65103822 None:intergenic
AAGTCAATAAAATAATTACA+AGG 0.623847 7_1:+65102836 None:intergenic
GCATATGTCACTTCTTCTAG+CGG 0.624905 7_1:-65103287 Msa1030840:CDS
TTGCCGATACCGATTTGTAA+CGG 0.625877 7_1:+65105056 None:intergenic
ATAAAGGAATATGATACACT+AGG 0.628627 7_1:+65103371 None:intergenic
GACAATGGAAAAGTCAGGGA+GGG 0.630769 7_1:-65103036 Msa1030840:CDS
GAAATGGCGACTACTTCAAG+AGG 0.640072 7_1:-65108307 Msa1030840:CDS
ATCACAGCTAACCAACCTAA+GGG 0.644653 7_1:+65102878 None:intergenic
TGATGGAGTCCCTCGTACGG+TGG 0.647091 7_1:-65103313 Msa1030840:CDS
CCTCCAATTCTTGCACACAC+CGG 0.651110 7_1:+65103466 None:intergenic
ATTCGACAATGGAAAAGTCA+GGG 0.652577 7_1:-65103040 Msa1030840:CDS
TGTTTCCAGATTCCCTCCGG+AGG 0.654881 7_1:-65108234 Msa1030840:CDS
TCTTTGCACTCCCCAAAGAA+CGG 0.663151 7_1:+65108199 None:intergenic
CAATTGGTTTACCAATAGGG+AGG 0.669014 7_1:-65106026 Msa1030840:intron
GAGGTGTCCAAGGAAGAGTG+AGG 0.685556 7_1:-65103888 Msa1030840:CDS
CGACAATGGAAAAGTCAGGG+AGG 0.713647 7_1:-65103037 Msa1030840:CDS
ATATGCGCACCACCGTACGA+GGG 0.719358 7_1:+65103304 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGATTAATCTTTTAAAAAA+AGG - chr7_1:65103217-65103236 Msa1030840:CDS 10.0%
!!! TTTTTTCAAAACAAAAAAAA+TGG + chr7_1:65103499-65103518 None:intergenic 10.0%
!! TGAAAAAATTAAAAAAAAAG+AGG - chr7_1:65103511-65103530 Msa1030840:CDS 10.0%
!! GAAAAAATTAAAAAAAAAGA+GGG - chr7_1:65103512-65103531 Msa1030840:CDS 10.0%
!! CTGAAAAAATTTAAAAAAAT+TGG - chr7_1:65103570-65103589 Msa1030840:intron 10.0%
!!! TTTAATTTTTCTATTGTAAT+TGG + chr7_1:65104204-65104223 None:intergenic 10.0%
!!! CTGAAAAAATTTTAAAAAAT+TGG + chr7_1:65104624-65104643 None:intergenic 10.0%
!!! ATTTTTTCAAAACAAAAAAA+TGG - chr7_1:65104693-65104712 Msa1030840:intron 10.0%
!! GAATTAAAAAGATAAAAAAT+AGG - chr7_1:65104730-65104749 Msa1030840:intron 10.0%
!! GAAAAAAACAATTAAAAAAT+TGG - chr7_1:65106428-65106447 Msa1030840:intron 10.0%
!! TATTAATTTATTATACATGA+GGG + chr7_1:65106692-65106711 None:intergenic 10.0%
!! TTATTAATTTATTATACATG+AGG + chr7_1:65106693-65106712 None:intergenic 10.0%
!! ATTAATAATTAATAATCACT+TGG - chr7_1:65106750-65106769 Msa1030840:intron 10.0%
!! ACATTATATGATAATATAAA+TGG - chr7_1:65107036-65107055 Msa1030840:intron 10.0%
!!! TTTATTTTTCTTTTTTGAGT+GGG + chr7_1:65103050-65103069 None:intergenic 15.0%
!!! TTTTATTTTTCTTTTTTGAG+TGG + chr7_1:65103051-65103070 None:intergenic 15.0%
!! TAATTAAAAAATCATGTTTC+AGG - chr7_1:65103091-65103110 Msa1030840:CDS 15.0%
!!! ATAATTGCTAATTTTGATTT+CGG - chr7_1:65103152-65103171 Msa1030840:CDS 15.0%
!! AAAAATAATCTGATTTAGAT+GGG + chr7_1:65103806-65103825 None:intergenic 15.0%
!! AAAAAATAATCTGATTTAGA+TGG + chr7_1:65103807-65103826 None:intergenic 15.0%
!! TAGAAGATATTTAAAAATAC+TGG - chr7_1:65104078-65104097 Msa1030840:intron 15.0%
!!! TTTTTTTGCGAAATAAAAAA+TGG - chr7_1:65104132-65104151 Msa1030840:intron 15.0%
!! ATTAAAATGATTTAATGATG+TGG - chr7_1:65104529-65104548 Msa1030840:intron 15.0%
!! ATTATATTAAAGATTGTTGT+TGG + chr7_1:65105312-65105331 None:intergenic 15.0%
!!! AATAAAAGTTATGTTGTTTA+AGG - chr7_1:65105329-65105348 Msa1030840:intron 15.0%
!!! ATAAAAGTTATGTTGTTTAA+GGG - chr7_1:65105330-65105349 Msa1030840:intron 15.0%
!!! TTGTTTGTTTTGAAAATTTA+GGG - chr7_1:65105459-65105478 Msa1030840:intron 15.0%
!!! TTTTATTTATTATCGATCAA+AGG - chr7_1:65105574-65105593 Msa1030840:intron 15.0%
!! AAAACCAAAAAAATTTAAAG+AGG + chr7_1:65105895-65105914 None:intergenic 15.0%
!! ATAACATTAGAAATTAGATT+TGG + chr7_1:65106513-65106532 None:intergenic 15.0%
!! ATAGTTATATCAAAATATGA+AGG + chr7_1:65106545-65106564 None:intergenic 15.0%
!!! ATTATACTATCAACAAATTT+TGG + chr7_1:65106622-65106641 None:intergenic 15.0%
!! ATTAATTTATTATACATGAG+GGG + chr7_1:65106691-65106710 None:intergenic 15.0%
!! CTTTAAACATGTTATAATTA+TGG - chr7_1:65106987-65107006 Msa1030840:intron 15.0%
!! AAAACTAAATAGAAAAACAT+AGG - chr7_1:65107524-65107543 Msa1030840:intron 15.0%
!!! AAGCAATAATTTTTTTCTTG+AGG + chr7_1:65103015-65103034 None:intergenic 20.0%
!!! TTATTTTTCTTTTTTGAGTG+GGG + chr7_1:65103049-65103068 None:intergenic 20.0%
!! GATTAATCTTCTGTTTAAAT+TGG + chr7_1:65103207-65103226 None:intergenic 20.0%
!!! TTTTGTAGTTTTCAAAGATA+GGG + chr7_1:65104899-65104918 None:intergenic 20.0%
!! TAAGAATGAAAACAAAAATC+TGG - chr7_1:65103602-65103621 Msa1030840:intron 20.0%
!!! TTGAAAGAATCTTTTTTACA+GGG + chr7_1:65103739-65103758 None:intergenic 20.0%
!!! ATTGAAAGAATCTTTTTTAC+AGG + chr7_1:65103740-65103759 None:intergenic 20.0%
!! ATTAAAATGATTGAATGATG+TGG + chr7_1:65103840-65103859 None:intergenic 20.0%
!! TAAGAATGAAAACAAAAATC+TGG + chr7_1:65103602-65103621 None:intergenic 20.0%
!!! TTTTGTAGTTTTCAAAGATA+GGG - chr7_1:65104899-65104918 Msa1030840:intron 20.0%
!!! AAAAACGCACAATTTTTTTA+AGG + chr7_1:65104975-65104994 None:intergenic 20.0%
!!! AAATTGTGCGTTTTTTTATT+AGG - chr7_1:65104980-65104999 Msa1030840:intron 20.0%
!!! AATTGTGCGTTTTTTTATTA+GGG - chr7_1:65104981-65105000 Msa1030840:intron 20.0%
!! NNNNNNNNGAAGGTTTCAAA+TGG - chr7_1:65105248-65105267 Msa1030840:intron 20.0%
!! NNNNNNNGAAGGTTTCAAAT+GGG - chr7_1:65105249-65105268 Msa1030840:intron 20.0%
!! AAACGATAGAGAAAAAAAAT+TGG - chr7_1:65105410-65105429 Msa1030840:intron 20.0%
!!! GTTGTTTGTTTTGAAAATTT+AGG - chr7_1:65105458-65105477 Msa1030840:intron 20.0%
!!! TAACTCATTTAAGCTATTTT+GGG + chr7_1:65105510-65105529 None:intergenic 20.0%
!!! ATAACTCATTTAAGCTATTT+TGG + chr7_1:65105511-65105530 None:intergenic 20.0%
!!! TTGGTTTTATTATTTTGAGT+TGG - chr7_1:65105907-65105926 Msa1030840:intron 20.0%
!! ACAATTAAAAAATTGGGTAT+TGG - chr7_1:65106435-65106454 Msa1030840:intron 20.0%
!! TGTGTATCTAATAACTAATA+AGG + chr7_1:65106485-65106504 None:intergenic 20.0%
!! TTAATTTATTATACATGAGG+GGG + chr7_1:65106690-65106709 None:intergenic 20.0%
!! AAAACTCATAAAAGATTTCA+AGG - chr7_1:65107226-65107245 Msa1030840:intron 20.0%
!! TTAGAATAAGTGAATTATTG+TGG + chr7_1:65107915-65107934 None:intergenic 20.0%
! TGTTGAGAGGAAAAAAAATA+TGG - chr7_1:65102892-65102911 Msa1030840:CDS 25.0%
!!! TATTTTTCTTTTTTGAGTGG+GGG + chr7_1:65103048-65103067 None:intergenic 25.0%
!! TTTGTAGTTTTCAAAGATAG+GGG + chr7_1:65104900-65104919 None:intergenic 25.0%
!! GTTTTGTAGTTTTCAAAGAT+AGG + chr7_1:65104898-65104917 None:intergenic 25.0%
!!! TGAAAGAATCTTTTTTACAG+GGG + chr7_1:65103738-65103757 None:intergenic 25.0%
! GAAAGAATCTTCATATTTCA+GGG + chr7_1:65103768-65103787 None:intergenic 25.0%
! ATGAAAGAAAAAAGCAGAAA+AGG - chr7_1:65103994-65104013 Msa1030840:intron 25.0%
!! GTTTTGTAGTTTTCAAAGAT+AGG - chr7_1:65104898-65104917 Msa1030840:intron 25.0%
!! TTTGTAGTTTTCAAAGATAG+GGG - chr7_1:65104900-65104919 Msa1030840:intron 25.0%
!!! ATTGTGCGTTTTTTTATTAG+GGG - chr7_1:65104982-65105001 Msa1030840:intron 25.0%
!! ATGTTGTTTAAGGGTATAAT+TGG - chr7_1:65105339-65105358 Msa1030840:intron 25.0%
!! TGTTGTTTAAGGGTATAATT+GGG - chr7_1:65105340-65105359 Msa1030840:intron 25.0%
! AAAAAAATTTAAAGAGGACG+AGG + chr7_1:65105889-65105908 None:intergenic 25.0%
!!! TCGTCCTCTTTAAATTTTTT+TGG - chr7_1:65105888-65105907 Msa1030840:intron 25.0%
!!! GTTATCAAGGTTCTAAATAA+CGG + chr7_1:65107183-65107202 None:intergenic 25.0%
!!! CATACTTTAACTTGTTATCA+AGG + chr7_1:65107196-65107215 None:intergenic 25.0%
! TTGAATCTGAATATTAAACC+TGG + chr7_1:65107311-65107330 None:intergenic 25.0%
! AACAGATAAAGCAAAAGTAA+AGG + chr7_1:65107421-65107440 None:intergenic 25.0%
! TAGATCGTAGAATTATTGAA+GGG + chr7_1:65107453-65107472 None:intergenic 25.0%
! ATAGATCGTAGAATTATTGA+AGG + chr7_1:65107454-65107473 None:intergenic 25.0%
! ATCACAACAATAACAGTATT+AGG + chr7_1:65107561-65107580 None:intergenic 25.0%
! TTATTGTTGTGATACAAAGT+AGG - chr7_1:65107568-65107587 Msa1030840:intron 25.0%
! TATTGTTGTGATACAAAGTA+GGG - chr7_1:65107569-65107588 Msa1030840:intron 25.0%
!! GGTCTTTTCATAAAATTTAC+TGG - chr7_1:65107710-65107729 Msa1030840:intron 25.0%
! AATTTACTGGAGAAATTTCT+TGG - chr7_1:65107723-65107742 Msa1030840:intron 25.0%
! ATAAAGGAATATGATACACT+AGG + chr7_1:65107787-65107806 None:intergenic 25.0%
!!! CCTTCTTTTTTCTTGTAAAT+GGG + chr7_1:65107942-65107961 None:intergenic 25.0%
!!! ACCTTCTTTTTTCTTGTAAA+TGG + chr7_1:65107943-65107962 None:intergenic 25.0%
! AATATATGTTGTCACTCATA+AGG - chr7_1:65108170-65108189 Msa1030840:intron 25.0%
! AAAAGGCTTAATAGCACTTT+TGG - chr7_1:65103234-65103253 Msa1030840:CDS 30.0%
! TCGCAATTTTGTCAAACATA+GGG + chr7_1:65104930-65104949 None:intergenic 30.0%
! ATCGCAATTTTGTCAAACAT+AGG + chr7_1:65104929-65104948 None:intergenic 30.0%
! GTTTGACAAAATTGCGATTT+TGG - chr7_1:65103265-65103284 Msa1030840:CDS 30.0%
! TTGTAGTTTTCAAAGATAGG+GGG + chr7_1:65104901-65104920 None:intergenic 30.0%
! AATAGGCTTAATAGCACTTT+TGG + chr7_1:65104747-65104766 None:intergenic 30.0%
!!! GAAAGAATCTTTTTTACAGG+GGG + chr7_1:65103737-65103756 None:intergenic 30.0%
CGAAAGAATCTTCATATTTC+AGG + chr7_1:65103769-65103788 None:intergenic 30.0%
! AATAGGCTTAATAGCACTTT+TGG - chr7_1:65104747-65104766 Msa1030840:intron 30.0%
! TTGTAGTTTTCAAAGATAGG+GGG - chr7_1:65104901-65104920 Msa1030840:intron 30.0%
! GTTTGACAAAATTGCGATTT+TGG + chr7_1:65103265-65103284 None:intergenic 30.0%
! ATCGCAATTTTGTCAAACAT+AGG - chr7_1:65104929-65104948 Msa1030840:intron 30.0%
! TCGCAATTTTGTCAAACATA+GGG - chr7_1:65104930-65104949 Msa1030840:intron 30.0%
! TGTCAATTGGTTTACCAATA+GGG - chr7_1:65105126-65105145 Msa1030840:CDS 30.0%
!!! AAGATTTTCTCCTCTGAAAT+AGG - chr7_1:65105799-65105818 Msa1030840:intron 30.0%
!!! AGATTTTCTCCTCTGAAATA+GGG - chr7_1:65105800-65105819 Msa1030840:intron 30.0%
TGTAAGTATGATAACAAGCA+AGG - chr7_1:65106044-65106063 Msa1030840:CDS 30.0%
ACAAGCAAGGTTTCAAAAAA+CGG - chr7_1:65106057-65106076 Msa1030840:CDS 30.0%
CATGGAAAGAGAAAACAAAA+CGG - chr7_1:65106373-65106392 Msa1030840:intron 30.0%
AATAACTAATAAGGTCACGT+GGG + chr7_1:65106476-65106495 None:intergenic 30.0%
TAATAACTAATAAGGTCACG+TGG + chr7_1:65106477-65106496 None:intergenic 30.0%
! AAACTTATTGATTACACCAC+CGG + chr7_1:65106790-65106809 None:intergenic 30.0%
GCTGAAAGAATTGATATAAG+AGG - chr7_1:65107248-65107267 Msa1030840:intron 30.0%
TTGAAGAAGTAATGGTTCTT+GGG + chr7_1:65107752-65107771 None:intergenic 30.0%
TACACTTCTTGAAGAAGTAA+TGG + chr7_1:65107760-65107779 None:intergenic 30.0%
! TCTTCGAGCAATAAACTTTT+TGG + chr7_1:65107822-65107841 None:intergenic 30.0%
CCCATTTACAAGAAAAAAGA+AGG - chr7_1:65107939-65107958 Msa1030840:intron 30.0%
CAAGCTAAGTACTCTTATAT+TGG + chr7_1:65108196-65108215 None:intergenic 30.0%
! GCAATTTTGTCAAACATAGG+GGG + chr7_1:65104932-65104951 None:intergenic 35.0%
! CGCAATTTTGTCAAACATAG+GGG + chr7_1:65104931-65104950 None:intergenic 35.0%
CAACGAAAACGAAACATAAG+GGG + chr7_1:65104873-65104892 None:intergenic 35.0%
GCAACGAAAACGAAACATAA+GGG + chr7_1:65104872-65104891 None:intergenic 35.0%
TGCAACGAAAACGAAACATA+AGG + chr7_1:65104871-65104890 None:intergenic 35.0%
! TTTCGTTTTCGTTGCACTTT+TGG - chr7_1:65103325-65103344 Msa1030840:CDS 35.0%
! GTATGCAAAAGTTGCGATTT+TGG + chr7_1:65103414-65103433 None:intergenic 35.0%
! ATCGCAACTTTTGCATACAT+AGG - chr7_1:65103416-65103435 Msa1030840:CDS 35.0%
! TCGCAACTTTTGCATACATA+GGG - chr7_1:65103417-65103436 Msa1030840:CDS 35.0%
TCTGATTTAGATGGGATCAA+GGG + chr7_1:65103798-65103817 None:intergenic 35.0%
ATCTGATTTAGATGGGATCA+AGG + chr7_1:65103799-65103818 None:intergenic 35.0%
CTGAGAAGCTTGAATTACAT+AGG - chr7_1:65104292-65104311 Msa1030840:intron 35.0%
! TCGCAACTTTTGCAAACATA+GGG + chr7_1:65104775-65104794 None:intergenic 35.0%
! ATCGCAACTTTTGCAAACAT+AGG + chr7_1:65104776-65104795 None:intergenic 35.0%
! GTTTGCAAAAGTTGCGATTT+TGG - chr7_1:65104778-65104797 Msa1030840:CDS 35.0%
! TTTCGTTTTCGTTGCACTTT+TGG + chr7_1:65103325-65103344 None:intergenic 35.0%
TGCAACGAAAACGAAACATA+AGG - chr7_1:65104871-65104890 Msa1030840:CDS 35.0%
GCAACGAAAACGAAACATAA+GGG - chr7_1:65104872-65104891 Msa1030840:CDS 35.0%
CAACGAAAACGAAACATAAG+GGG - chr7_1:65104873-65104892 Msa1030840:CDS 35.0%
! CGCAATTTTGTCAAACATAG+GGG - chr7_1:65104931-65104950 Msa1030840:intron 35.0%
! GCAATTTTGTCAAACATAGG+GGG - chr7_1:65104932-65104951 Msa1030840:intron 35.0%
TCGGCTCTCATAGTAAAAAT+AGG + chr7_1:65105008-65105027 None:intergenic 35.0%
! AAGGATTTGATGACTTTAGC+AGG - chr7_1:65105094-65105113 Msa1030840:CDS 35.0%
! GTGTCAATTGGTTTACCAAT+AGG - chr7_1:65105125-65105144 Msa1030840:CDS 35.0%
AGTGTTTCTCATTTCAGAGT+AGG + chr7_1:65105615-65105634 None:intergenic 35.0%
TGAAATGAGAAACACTTGTG+TGG - chr7_1:65105619-65105638 Msa1030840:intron 35.0%
TGTGACCAAACCAAAATTCT+TGG + chr7_1:65105763-65105782 None:intergenic 35.0%
AAGAGAGAAGAGAGAGAAAA+TGG + chr7_1:65105716-65105735 None:intergenic 35.0%
TGTGACCAAACCAAAATTCT+TGG - chr7_1:65105763-65105782 Msa1030840:intron 35.0%
ATTAGCCAATTCAGCTTCAA+TGG - chr7_1:65105853-65105872 Msa1030840:intron 35.0%
TGCACTTGAGTTTCTTCTTA+AGG - chr7_1:65106007-65106026 Msa1030840:intron 35.0%
TTCAAAAAACGGAACGTTAC+CGG - chr7_1:65106068-65106087 Msa1030840:intron 35.0%
! TTTTTGTTCTCAACGCGAAA+AGG + chr7_1:65106145-65106164 None:intergenic 35.0%
ATAACTAATAAGGTCACGTG+GGG + chr7_1:65106475-65106494 None:intergenic 35.0%
!! ATTGATATAAGAGGTGTCCA+AGG - chr7_1:65107257-65107276 Msa1030840:intron 35.0%
TGAAGTGCAATGGAAAAAGT+AGG + chr7_1:65107364-65107383 None:intergenic 35.0%
TCAAGATATGTGAAGTGCAA+TGG + chr7_1:65107374-65107393 None:intergenic 35.0%
GTGATACAAAGTAGGGAAAA+CGG - chr7_1:65107576-65107595 Msa1030840:intron 35.0%
AGAGAATTGTCAACTTCCTA+TGG - chr7_1:65107612-65107631 Msa1030840:intron 35.0%
ATGATATCAAGCACATCCAT+AGG + chr7_1:65107631-65107650 None:intergenic 35.0%
GATGTGCTTGATATCATTTC+CGG - chr7_1:65107634-65107653 Msa1030840:intron 35.0%
CTTGAAGAAGTAATGGTTCT+TGG + chr7_1:65107753-65107772 None:intergenic 35.0%
TATTCCTTTATTAGCACACC+CGG - chr7_1:65107796-65107815 Msa1030840:intron 35.0%
AGTTTATTGCTCGAAGATGA+TGG - chr7_1:65107825-65107844 Msa1030840:intron 35.0%
!! TCTAAGTTTGTTACTTCCAG+AGG + chr7_1:65107980-65107999 None:intergenic 35.0%
ATGCTCTAACGAATTTGTCT+TGG - chr7_1:65108029-65108048 Msa1030840:intron 35.0%
GTCTATCAATCTCGATATTC+TGG - chr7_1:65108081-65108100 Msa1030840:intron 35.0%
ATCAATCTCGATATTCTGGT+TGG - chr7_1:65108085-65108104 Msa1030840:intron 35.0%
! TCAATCTCGATATTCTGGTT+GGG - chr7_1:65108086-65108105 Msa1030840:intron 35.0%
TTGGGTTACTTATTCGACAA+TGG - chr7_1:65108104-65108123 Msa1030840:intron 35.0%
TATTCGACAATGGAAAAGTC+AGG - chr7_1:65108114-65108133 Msa1030840:intron 35.0%
ATTCGACAATGGAAAAGTCA+GGG - chr7_1:65108115-65108134 Msa1030840:intron 35.0%
! TAGCTGTGATGAACAACTTT+TGG - chr7_1:65108290-65108309 Msa1030840:CDS 35.0%
TTCAAGAGGACATACCTCTT+TGG - chr7_1:65102862-65102881 Msa1030840:CDS 40.0%
!!! TTTCTTTTTTGAGTGGGGGT+GGG + chr7_1:65103044-65103063 None:intergenic 40.0%
!!! TTTTCTTTTTTGAGTGGGGG+TGG + chr7_1:65103045-65103064 None:intergenic 40.0%
ACCAGGTCAAAATTGACCAT+GGG + chr7_1:65104839-65104858 None:intergenic 40.0%
CACCCACATCACTTATATGA+GGG - chr7_1:65103387-65103406 Msa1030840:CDS 40.0%
ACCCACATCACTTATATGAG+GGG - chr7_1:65103388-65103407 Msa1030840:CDS 40.0%
! CGCAACTTTTGCATACATAG+GGG - chr7_1:65103418-65103437 Msa1030840:CDS 40.0%
GTCTTTACCCCCTGTAATTT+AGG - chr7_1:65103697-65103716 Msa1030840:intron 40.0%
!!! CTTTTTTACAGGGGGAAAAC+CGG + chr7_1:65103729-65103748 None:intergenic 40.0%
TGATTTAGATGGGATCAAGG+GGG + chr7_1:65103796-65103815 None:intergenic 40.0%
CTGATTTAGATGGGATCAAG+GGG + chr7_1:65103797-65103816 None:intergenic 40.0%
! GCAACTTTTGCAAACATAGG+GGG + chr7_1:65104773-65104792 None:intergenic 40.0%
! CGCAACTTTTGCAAACATAG+GGG + chr7_1:65104774-65104793 None:intergenic 40.0%
ACCCACATCACTTATATGAG+GGG + chr7_1:65103388-65103407 None:intergenic 40.0%
CACCCACATCACTTATATGA+GGG + chr7_1:65103387-65103406 None:intergenic 40.0%
ACCAGGTCAAAATTGACCAT+GGG - chr7_1:65104839-65104858 Msa1030840:CDS 40.0%
! ATGACTTTAGCAGGAAGTGT+TGG - chr7_1:65105103-65105122 Msa1030840:CDS 40.0%
! CAATTGGTTTACCAATAGGG+AGG - chr7_1:65105129-65105148 Msa1030840:CDS 40.0%
CAAACCAAAATTCTTGGTCC+TGG + chr7_1:65105769-65105788 None:intergenic 40.0%
!!! CAGGACCAAGAATTTTGGTT+TGG - chr7_1:65105644-65105663 Msa1030840:intron 40.0%
!!! CAGGACCAAGAATTTTGGTT+TGG + chr7_1:65105644-65105663 None:intergenic 40.0%
CAAACCAAAATTCTTGGTCC+TGG - chr7_1:65105769-65105788 Msa1030840:intron 40.0%
TCAGAGGAGAAAATCTTGTG+TGG + chr7_1:65105796-65105815 None:intergenic 40.0%
TGGGTTTAACCCTATTTCAG+AGG + chr7_1:65105812-65105831 None:intergenic 40.0%
GAAGCTGAATTGGCTAATGA+GGG + chr7_1:65105851-65105870 None:intergenic 40.0%
TGAAGCTGAATTGGCTAATG+AGG + chr7_1:65105852-65105871 None:intergenic 40.0%
GCATACCATTGAAGCTGAAT+TGG + chr7_1:65105861-65105880 None:intergenic 40.0%
ATGAACATCCCTCGAAACAA+TGG - chr7_1:65105975-65105994 Msa1030840:intron 40.0%
GAAACTCAAGTGCATCATCA+TGG + chr7_1:65106001-65106020 None:intergenic 40.0%
TCAAAAAACGGAACGTTACC+GGG - chr7_1:65106069-65106088 Msa1030840:intron 40.0%
!! TTGCCGATACCGATTTGTAA+CGG + chr7_1:65106102-65106121 None:intergenic 40.0%
AAAAGGTCCAAAAACGGTCA+CGG + chr7_1:65106128-65106147 None:intergenic 40.0%
AACGCGAAAAGGTCCAAAAA+CGG + chr7_1:65106134-65106153 None:intergenic 40.0%
CGTACTAGAAAACGAATTCG+CGG + chr7_1:65106223-65106242 None:intergenic 40.0%
! TCTTCCCTGTTTTCTCTTTC+TGG + chr7_1:65106288-65106307 None:intergenic 40.0%
AACAGGGAAGAAGAAGAAGA+TGG - chr7_1:65106297-65106316 Msa1030840:intron 40.0%
!!! ATGGAGCGGTTTTGAAAACA+GGG - chr7_1:65106316-65106335 Msa1030840:intron 40.0%
! AGGGAAAGATGAAGCAGTTT+TGG - chr7_1:65106341-65106360 Msa1030840:intron 40.0%
AGAGAAAACAAAACGGTGTC+AGG - chr7_1:65106380-65106399 Msa1030840:intron 40.0%
TAACTAATAAGGTCACGTGG+GGG + chr7_1:65106474-65106493 None:intergenic 40.0%
ATAATCACTTGGCTACCATG+TGG - chr7_1:65106761-65106780 Msa1030840:intron 40.0%
GATACAAATAACGGTCTTCG+CGG + chr7_1:65107100-65107119 None:intergenic 40.0%
GGACGATGCGATACAAATAA+CGG + chr7_1:65107109-65107128 None:intergenic 40.0%
!! AAGGTTCTAAATAACGGTCG+CGG + chr7_1:65107177-65107196 None:intergenic 40.0%
AAAAGTAGGAACGAACCAGT+TGG + chr7_1:65107350-65107369 None:intergenic 40.0%
GTCATCGATATCTAGTGTTC+CGG + chr7_1:65107656-65107675 None:intergenic 40.0%
!! GAGCAATAAACTTTTTGGCC+GGG + chr7_1:65107817-65107836 None:intergenic 40.0%
!! CGAGCAATAAACTTTTTGGC+CGG + chr7_1:65107818-65107837 None:intergenic 40.0%
! GCATATGTCACTTCTTCTAG+CGG - chr7_1:65107868-65107887 Msa1030840:intron 40.0%
TTCTAGCGGTTATTGTGTCA+TGG - chr7_1:65107882-65107901 Msa1030840:intron 40.0%
! GTTTGTTACTTCCAGAGGTA+GGG + chr7_1:65107975-65107994 None:intergenic 40.0%
!! AGTTTGTTACTTCCAGAGGT+AGG + chr7_1:65107976-65107995 None:intergenic 40.0%
! GCATTTGCTAAAAGCAAGCA+AGG + chr7_1:65108013-65108032 None:intergenic 40.0%
CTCTAACGAATTTGTCTTGG+TGG - chr7_1:65108032-65108051 Msa1030840:intron 40.0%
ATCACAGCTAACCAACCTAA+GGG + chr7_1:65108280-65108299 None:intergenic 40.0%
! CTGTGATGAACAACTTTTGG+CGG - chr7_1:65108293-65108312 Msa1030840:CDS 40.0%
! GGACATACCTCTTTGGAAAC+TGG - chr7_1:65102869-65102888 Msa1030840:CDS 45.0%
CTCAACACCAGTTTCCAAAG+AGG + chr7_1:65102879-65102898 None:intergenic 45.0%
! CTTTGGAAACTGGTGTTGAG+AGG - chr7_1:65102879-65102898 Msa1030840:CDS 45.0%
TCTTTGCACTCCCCAAAGAA+CGG + chr7_1:65102959-65102978 None:intergenic 45.0%
!!! TTCTTTTTTGAGTGGGGGTG+GGG + chr7_1:65103043-65103062 None:intergenic 45.0%
CGAAAACGAAACATAAGGGG+CGG + chr7_1:65104876-65104895 None:intergenic 45.0%
CAGGTCAAAATTGACCATGG+GGG + chr7_1:65104841-65104860 None:intergenic 45.0%
CCAGGTCAAAATTGACCATG+GGG + chr7_1:65104840-65104859 None:intergenic 45.0%
GACCAGGTCAAAATTGACCA+TGG + chr7_1:65104838-65104857 None:intergenic 45.0%
GCACCCACATCACTTATATG+AGG - chr7_1:65103386-65103405 Msa1030840:CDS 45.0%
GCCCCTCATATAAGTGATGT+GGG + chr7_1:65104800-65104819 None:intergenic 45.0%
GAACTCGCCTAAATTACAGG+GGG + chr7_1:65103707-65103726 None:intergenic 45.0%
GGAACTCGCCTAAATTACAG+GGG + chr7_1:65103708-65103727 None:intergenic 45.0%
CGGAACTCGCCTAAATTACA+GGG + chr7_1:65103709-65103728 None:intergenic 45.0%
CCTGTAATTTAGGCGAGTTC+CGG - chr7_1:65103707-65103726 Msa1030840:intron 45.0%
GCCCCTCATATAAGTGATGT+GGG - chr7_1:65104800-65104819 Msa1030840:CDS 45.0%
GCACCCACATCACTTATATG+AGG + chr7_1:65103386-65103405 None:intergenic 45.0%
GACCAGGTCAAAATTGACCA+TGG - chr7_1:65104838-65104857 Msa1030840:CDS 45.0%
CCAGGTCAAAATTGACCATG+GGG - chr7_1:65104840-65104859 Msa1030840:CDS 45.0%
CAGGTCAAAATTGACCATGG+GGG - chr7_1:65104841-65104860 Msa1030840:CDS 45.0%
CGAAAACGAAACATAAGGGG+CGG - chr7_1:65104876-65104895 Msa1030840:CDS 45.0%
CATCAAATCCTTCCACCATC+CGG + chr7_1:65105086-65105105 None:intergenic 45.0%
!! CAGGAAGTGTTGGTGTCAAT+TGG - chr7_1:65105113-65105132 Msa1030840:CDS 45.0%
! TGGACCAGGACCAAGAATTT+TGG - chr7_1:65105639-65105658 Msa1030840:intron 45.0%
GAGAGAAGAGAAGAGAGAGA+AGG + chr7_1:65105689-65105708 None:intergenic 45.0%
! TGGACCAGGACCAAGAATTT+TGG + chr7_1:65105639-65105658 None:intergenic 45.0%
GAGAAAATCTTGTGTGGACC+AGG + chr7_1:65105790-65105809 None:intergenic 45.0%
GGCTAATGAGGGAATGAAGT+CGG + chr7_1:65105840-65105859 None:intergenic 45.0%
CATCATGGCCATTGTTTCGA+GGG + chr7_1:65105986-65106005 None:intergenic 45.0%
TCATCATGGCCATTGTTTCG+AGG + chr7_1:65105987-65106006 None:intergenic 45.0%
TTGAAAGTGACGAACCTGTG+AGG - chr7_1:65106243-65106262 Msa1030840:intron 45.0%
GAACCTGTGAGGAAGAAGAT+CGG - chr7_1:65106254-65106273 Msa1030840:intron 45.0%
AGCCACCAGAAAGAGAAAAC+AGG - chr7_1:65106280-65106299 Msa1030840:intron 45.0%
GCCACCAGAAAGAGAAAACA+GGG - chr7_1:65106281-65106300 Msa1030840:intron 45.0%
! TCCCTGTTTTCTCTTTCTGG+TGG + chr7_1:65106285-65106304 None:intergenic 45.0%
GGAAGAAGAAGAAGATGGAG+CGG - chr7_1:65106302-65106321 Msa1030840:intron 45.0%
!!! GATGGAGCGGTTTTGAAAAC+AGG - chr7_1:65106315-65106334 Msa1030840:intron 45.0%
!!! TGGAGCGGTTTTGAAAACAG+GGG - chr7_1:65106317-65106336 Msa1030840:intron 45.0%
!!! CGGTTTTGAAAACAGGGGAA+GGG - chr7_1:65106322-65106341 Msa1030840:intron 45.0%
!!! AGATGAAGCAGTTTTGGCTC+TGG - chr7_1:65106347-65106366 Msa1030840:intron 45.0%
!!! GATGAAGCAGTTTTGGCTCT+GGG - chr7_1:65106348-65106367 Msa1030840:intron 45.0%
TGTCACGGTTTCGGCTATAA+CGG + chr7_1:65107130-65107149 None:intergenic 45.0%
CGTTAAGGTTGTCACGGTTT+CGG + chr7_1:65107139-65107158 None:intergenic 45.0%
AGTAGGGAAAACGGTGAAGA+AGG - chr7_1:65107585-65107604 Msa1030840:intron 45.0%
GATGACCACTTTCAGTTTGC+CGG - chr7_1:65107670-65107689 Msa1030840:intron 45.0%
GTAGTCAATTTCCCTACCTC+TGG - chr7_1:65107961-65107980 Msa1030840:intron 45.0%
TGCTAAAAGCAAGCAAGGCA+CGG + chr7_1:65108008-65108027 None:intergenic 45.0%
GACAATGGAAAAGTCAGGGA+GGG - chr7_1:65108119-65108138 Msa1030840:intron 45.0%
GACCTGGAAAGTGGTACATT+GGG + chr7_1:65108258-65108277 None:intergenic 45.0%
CATCACAGCTAACCAACCTA+AGG + chr7_1:65108281-65108300 None:intergenic 45.0%
!! GAATTAAAAAAATAAAAAAT+AGG + chr7_1:65103462-65103481 None:intergenic 5.0%
!!! AAAAAATTAAATCATTTTTT+CGG - chr7_1:65103626-65103645 Msa1030840:intron 5.0%
!!! TATTTTTTCAAAAAAAAAAA+TGG + chr7_1:65103660-65103679 None:intergenic 5.0%
!!! TTTTGAAAAAATAAAAAAAA+AGG - chr7_1:65103667-65103686 Msa1030840:intron 5.0%
!!! TATTTAAAATTTTAAAAATC+TGG - chr7_1:65104159-65104178 Msa1030840:intron 5.0%
!!! TTTAGTTTAATTAAAAATTT+AGG - chr7_1:65104261-65104280 Msa1030840:intron 5.0%
!! TGAAAAAATTTAAAAAAAAA+AGG + chr7_1:65104682-65104701 None:intergenic 5.0%
!! ATAAATAAAAAAAAAAAAGA+AGG + chr7_1:65105564-65105583 None:intergenic 5.0%
!! AAAAAAACAATTAAAAAATT+GGG - chr7_1:65106429-65106448 Msa1030840:intron 5.0%
!!! AAAAATAAAAATACAAATTT+TGG + chr7_1:65106590-65106609 None:intergenic 5.0%
TGCAAAGAGCTCAACCGAAC+TGG - chr7_1:65102971-65102990 Msa1030840:CDS 50.0%
GCAAAGAGCTCAACCGAACT+GGG - chr7_1:65102972-65102991 Msa1030840:CDS 50.0%
! TCACTTTGAGAGGCCCAGTT+CGG + chr7_1:65102988-65103007 None:intergenic 50.0%
AACTGGGCCTCTCAAAGTGA+TGG - chr7_1:65102988-65103007 Msa1030840:CDS 50.0%
ACTGGGCCTCTCAAAGTGAT+GGG - chr7_1:65102989-65103008 Msa1030840:CDS 50.0%
TTGAGGCCCATCACTTTGAG+AGG + chr7_1:65102998-65103017 None:intergenic 50.0%
!! CCCCATGGTCAATTTTGACC+TGG - chr7_1:65103349-65103368 Msa1030840:CDS 50.0%
GGCCCCTCATATAAGTGATG+TGG + chr7_1:65104799-65104818 None:intergenic 50.0%
CCGGAACTCGCCTAAATTAC+AGG + chr7_1:65103710-65103729 None:intergenic 50.0%
GGCCCCTCATATAAGTGATG+TGG - chr7_1:65104799-65104818 Msa1030840:CDS 50.0%
!! CCCCATGGTCAATTTTGACC+TGG + chr7_1:65103349-65103368 None:intergenic 50.0%
TCCCTATGAAACTGGAGGCT+CGG + chr7_1:65105027-65105046 None:intergenic 50.0%
AGCCTCCAGTTTCATAGGGA+CGG - chr7_1:65105027-65105046 Msa1030840:intron 50.0%
! AGATGGTCGCGGTTTTCTTC+CGG - chr7_1:65105064-65105083 Msa1030840:CDS 50.0%
!!! GTTTTCTTCCGGATGGTGGA+AGG - chr7_1:65105075-65105094 Msa1030840:CDS 50.0%
!!! ATGGGAGGGGGACTAGTTTT+TGG - chr7_1:65105267-65105286 Msa1030840:intron 50.0%
GAGAAACACTTGTGTGGACC+AGG - chr7_1:65105625-65105644 Msa1030840:intron 50.0%
GGGAATGAAGTCGGTAGACT+GGG + chr7_1:65105831-65105850 None:intergenic 50.0%
AGGGAATGAAGTCGGTAGAC+TGG + chr7_1:65105832-65105851 None:intergenic 50.0%
ATTTGTAACGGCCGCAATCC+CGG + chr7_1:65106090-65106109 None:intergenic 50.0%
GGATTGCGGCCGTTACAAAT+CGG - chr7_1:65106090-65106109 Msa1030840:intron 50.0%
CGGCCGTTACAAATCGGTAT+CGG - chr7_1:65106096-65106115 Msa1030840:intron 50.0%
TCACAGCCAAATCGCCGTTA+CGG - chr7_1:65106165-65106184 Msa1030840:intron 50.0%
AAACGAATTCGCGGCCGTAA+CGG + chr7_1:65106214-65106233 None:intergenic 50.0%
!!! GCGGTTTTGAAAACAGGGGA+AGG - chr7_1:65106321-65106340 Msa1030840:intron 50.0%
!!! CAGTTTTGGCTCTGGGAACA+TGG - chr7_1:65106355-65106374 Msa1030840:intron 50.0%
! CATGAGGGGGTATACAGAGT+CGG + chr7_1:65106677-65106696 None:intergenic 50.0%
AGGTGTCCAAGGAAGAGTGA+GGG - chr7_1:65107268-65107287 Msa1030840:intron 50.0%
ACCTTCCTCATCATGCCAAC+TGG - chr7_1:65107332-65107351 Msa1030840:intron 50.0%
ACCAGTTGGCATGATGAGGA+AGG + chr7_1:65107336-65107355 None:intergenic 50.0%
ACGAACCAGTTGGCATGATG+AGG + chr7_1:65107340-65107359 None:intergenic 50.0%
GGGAAAACGGTGAAGAAGGT+AGG - chr7_1:65107589-65107608 Msa1030840:intron 50.0%
ACACACCGGCAAACTGAAAG+TGG + chr7_1:65107678-65107697 None:intergenic 50.0%
TTGCCGGTGTGTGCAAGAAT+TGG - chr7_1:65107686-65107705 Msa1030840:intron 50.0%
CCTCCAATTCTTGCACACAC+CGG + chr7_1:65107692-65107711 None:intergenic 50.0%
TTGGCCGGGTGTGCTAATAA+AGG + chr7_1:65107803-65107822 None:intergenic 50.0%
!! AGATGATGGAGTCCCTCGTA+CGG - chr7_1:65107839-65107858 Msa1030840:intron 50.0%
CGACAATGGAAAAGTCAGGG+AGG - chr7_1:65108118-65108137 Msa1030840:intron 50.0%
!! AGGGAGGGTTGTTGACTTTG+TGG - chr7_1:65108134-65108153 Msa1030840:intron 50.0%
CTCCCAATGTACCACTTTCC+AGG - chr7_1:65108253-65108272 Msa1030840:CDS 50.0%
GGACCTGGAAAGTGGTACAT+TGG + chr7_1:65108259-65108278 None:intergenic 50.0%
TACCACTTTCCAGGTCCCTT+AGG - chr7_1:65108262-65108281 Msa1030840:CDS 50.0%
AACCTAAGGGACCTGGAAAG+TGG + chr7_1:65108267-65108286 None:intergenic 50.0%
ACTTTCCAGGTCCCTTAGGT+TGG - chr7_1:65108266-65108285 Msa1030840:CDS 50.0%
! CGCTGTTTCCAGATTCCCTC+CGG - chr7_1:65102918-65102937 Msa1030840:CDS 55.0%
TGTTTCCAGATTCCCTCCGG+AGG - chr7_1:65102921-65102940 Msa1030840:CDS 55.0%
AGCCGAGCCTCCAGTTTCAT+AGG - chr7_1:65105022-65105041 Msa1030840:intron 55.0%
GCCGAGCCTCCAGTTTCATA+GGG - chr7_1:65105023-65105042 Msa1030840:intron 55.0%
CGACCATCTAGTCCCTTCCA+GGG + chr7_1:65105053-65105072 None:intergenic 55.0%
TGGAAGGGACTAGATGGTCG+CGG - chr7_1:65105053-65105072 Msa1030840:CDS 55.0%
ACGGAACGTTACCGGGATTG+CGG - chr7_1:65106076-65106095 Msa1030840:intron 55.0%
! GCAACCACCGTGACCGTTTT+TGG - chr7_1:65106118-65106137 Msa1030840:intron 55.0%
AGGTCCAAAAACGGTCACGG+TGG + chr7_1:65106125-65106144 None:intergenic 55.0%
GCTCCGATCTTCTTCCTCAC+AGG + chr7_1:65106260-65106279 None:intergenic 55.0%
CTTGGCTACCATGTGGTGAC+CGG - chr7_1:65106768-65106787 Msa1030840:intron 55.0%
TTACACCACCGGTCACCACA+TGG + chr7_1:65106779-65106798 None:intergenic 55.0%
CGGTCGCGTTAAGGTTGTCA+CGG + chr7_1:65107145-65107164 None:intergenic 55.0%
! GAGGTGTCCAAGGAAGAGTG+AGG - chr7_1:65107267-65107286 Msa1030840:intron 55.0%
AGAGTGAGGGAGCTGCTTCA+AGG - chr7_1:65107281-65107300 Msa1030840:intron 55.0%
GAGCTGCTTCAAGGACATCC+AGG - chr7_1:65107290-65107309 Msa1030840:intron 55.0%
CCGGTGTGTGCAAGAATTGG+AGG - chr7_1:65107689-65107708 Msa1030840:intron 55.0%
ATATGCGCACCACCGTACGA+GGG + chr7_1:65107854-65107873 None:intergenic 55.0%
GCTAACCAACCTAAGGGACC+TGG + chr7_1:65108274-65108293 None:intergenic 55.0%
TCCAGATTCCCTCCGGAGGA+AGG - chr7_1:65102925-65102944 Msa1030840:CDS 60.0%
CCAGATTCCCTCCGGAGGAA+GGG - chr7_1:65102926-65102945 Msa1030840:CDS 60.0%
AAGGGACCAGGGCCGTTCTT+TGG - chr7_1:65102944-65102963 Msa1030840:CDS 60.0%
AGGGACCAGGGCCGTTCTTT+GGG - chr7_1:65102945-65102964 Msa1030840:CDS 60.0%
! CGTTGCACTTTTGGCCCCCA+TGG - chr7_1:65103334-65103353 Msa1030840:CDS 60.0%
TGACCTGGTCCACGCTGACA+TGG - chr7_1:65103364-65103383 Msa1030840:CDS 60.0%
! ATGTGGGTGCCATGTCAGCG+TGG + chr7_1:65104816-65104835 None:intergenic 60.0%
! ATGTGGGTGCCATGTCAGCG+TGG - chr7_1:65104816-65104835 Msa1030840:CDS 60.0%
TGACCTGGTCCACGCTGACA+TGG + chr7_1:65103364-65103383 None:intergenic 60.0%
! CGTTGCACTTTTGGCCCCCA+TGG + chr7_1:65103334-65103353 None:intergenic 60.0%
GGCCGTCCCTATGAAACTGG+AGG + chr7_1:65105032-65105051 None:intergenic 60.0%
CAGGGCCGTCCCTATGAAAC+TGG + chr7_1:65105035-65105054 None:intergenic 60.0%
CAGTTTCATAGGGACGGCCC+TGG - chr7_1:65105033-65105052 Msa1030840:intron 60.0%
TTCATAGGGACGGCCCTGGA+AGG - chr7_1:65105037-65105056 Msa1030840:intron 60.0%
TCATAGGGACGGCCCTGGAA+GGG - chr7_1:65105038-65105057 Msa1030840:intron 60.0%
GCGACCATCTAGTCCCTTCC+AGG + chr7_1:65105054-65105073 None:intergenic 60.0%
! GGTCGCGGTTTTCTTCCGGA+TGG - chr7_1:65105068-65105087 Msa1030840:CDS 60.0%
! CGCGGTTTTCTTCCGGATGG+TGG - chr7_1:65105071-65105090 Msa1030840:CDS 60.0%
GGCGTTCCGTAACGGCGATT+TGG + chr7_1:65106174-65106193 None:intergenic 60.0%
GCCGTTACGGAACGCCGTTA+CGG - chr7_1:65106178-65106197 Msa1030840:intron 60.0%
CCCGTAACGGCGTTCCGTAA+CGG + chr7_1:65106182-65106201 None:intergenic 60.0%
CCGTTACGGAACGCCGTTAC+GGG - chr7_1:65106179-65106198 Msa1030840:intron 60.0%
GCAGCTCCCTCACTCTTCCT+TGG + chr7_1:65107277-65107296 None:intergenic 60.0%
TGATGGAGTCCCTCGTACGG+TGG - chr7_1:65107842-65107861 Msa1030840:intron 60.0%
CATATGCGCACCACCGTACG+AGG + chr7_1:65107855-65107874 None:intergenic 60.0%
CCCTTCCTCCGGAGGGAATC+TGG + chr7_1:65102929-65102948 None:intergenic 65.0%
GGGACCAGGGCCGTTCTTTG+GGG - chr7_1:65102946-65102965 Msa1030840:CDS 65.0%
CACTCCCCAAAGAACGGCCC+TGG + chr7_1:65102953-65102972 None:intergenic 65.0%
GTGCCATGTCAGCGTGGACC+AGG + chr7_1:65104822-65104841 None:intergenic 65.0%
GTGCCATGTCAGCGTGGACC+AGG - chr7_1:65104822-65104841 Msa1030840:CDS 65.0%
CGGCCCTGGAAGGGACTAGA+TGG - chr7_1:65105047-65105066 Msa1030840:intron 65.0%
ACGGCGTTTCGCGCCCGTAA+CGG + chr7_1:65106195-65106214 None:intergenic 65.0%
ACGGGCGCGAAACGCCGTTA+CGG - chr7_1:65106197-65106216 Msa1030840:intron 65.0%
GGCTACCATGTGGTGACCGG+TGG - chr7_1:65106771-65106790 Msa1030840:intron 65.0%
TCGCGATCGCGGTCGCGTTA+AGG + chr7_1:65107154-65107173 None:intergenic 65.0%
TCCCTCCGGAGGAAGGGACC+AGG - chr7_1:65102932-65102951 Msa1030840:CDS 70.0%
CCCTGGTCCCTTCCTCCGGA+GGG + chr7_1:65102936-65102955 None:intergenic 70.0%
CCCTCCGGAGGAAGGGACCA+GGG - chr7_1:65102933-65102952 Msa1030840:CDS 70.0%
ACGGCCCTGGTCCCTTCCTC+CGG + chr7_1:65102940-65102959 None:intergenic 70.0%
AACGGTCGCGGTCGCGATCG+CGG + chr7_1:65107165-65107184 None:intergenic 70.0%
GCCCTGGTCCCTTCCTCCGG+AGG + chr7_1:65102937-65102956 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 65102851 65108326 65102851 ID=Msa1030840;Name=Msa1030840
chr7_1 mRNA 65102851 65108326 65102851 ID=Msa1030840-mRNA-1;Parent=Msa1030840;Name=Msa1030840-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|0.33|1|1|6|0|463
chr7_1 exon 65108174 65108326 65108174 ID=Msa1030840-mRNA-1:exon:14448;Parent=Msa1030840-mRNA-1
chr7_1 exon 65106027 65106080 65106027 ID=Msa1030840-mRNA-1:exon:14447;Parent=Msa1030840-mRNA-1
chr7_1 exon 65105051 65105202 65105051 ID=Msa1030840-mRNA-1:exon:14446;Parent=Msa1030840-mRNA-1
chr7_1 exon 65104776 65104908 65104776 ID=Msa1030840-mRNA-1:exon:14445;Parent=Msa1030840-mRNA-1
chr7_1 exon 65103824 65103986 65103824 ID=Msa1030840-mRNA-1:exon:14444;Parent=Msa1030840-mRNA-1
chr7_1 exon 65102851 65103587 65102851 ID=Msa1030840-mRNA-1:exon:14443;Parent=Msa1030840-mRNA-1
chr7_1 CDS 65108174 65108326 65108174 ID=Msa1030840-mRNA-1:cds;Parent=Msa1030840-mRNA-1
chr7_1 CDS 65106027 65106080 65106027 ID=Msa1030840-mRNA-1:cds;Parent=Msa1030840-mRNA-1
chr7_1 CDS 65105051 65105202 65105051 ID=Msa1030840-mRNA-1:cds;Parent=Msa1030840-mRNA-1
chr7_1 CDS 65104776 65104908 65104776 ID=Msa1030840-mRNA-1:cds;Parent=Msa1030840-mRNA-1
chr7_1 CDS 65103824 65103986 65103824 ID=Msa1030840-mRNA-1:cds;Parent=Msa1030840-mRNA-1
chr7_1 CDS 65102851 65103587 65102851 ID=Msa1030840-mRNA-1:cds;Parent=Msa1030840-mRNA-1
Gene Sequence

>Msa1030840

ATGGCGACTACTTCAAGAGGACATACCTCTTTGGAAACTGGTGTTGAGAGGAAAAAAAATATGGTGACGCTGTTTCCAGATTCCCTCCGGAGGAAGGGACCAGGGCCGTTCTTTGGGGAGTGCAAAGAGCTCAACCGAACTGGGCCTCTCAAAGATTTGATGACTTTAGCAGGAAGTGTTGGTGTCAATTGGTTTACCAATAGGGAGATGAACATCCCTCGAAACAATGGCCATGATGATGCACTTGAGTTTCTTCTTAAGGAAGTCAAACTTGCATGTAAGTATGATAACAAGCAAGGTTTCAAAAAACGGAACGTTACCGGGATTGCGGCCGTTACAAATCGGTATCGGCAACCACCAAGATCGGAGCAGCCACCAGAAAGAGAAAACAGGGAAGAAGAAGAAGATGGAGCGGTTTTGAAAACAGGGGAAGGGAAAGATGAAGCAGTTTTGGCTCTGGGAACATGGAAAGAGAAAACAAAACGGTGTCAGAACCTTGATAACAAGTTAAAGTATGATGATTTTTTAAAACTCATAAAAGATTTCAAGGCTGAAAGAATTGATATAAGAGGTGTCCAAGGAAGAGTGAGGGAGCTGCTTCAAGGACATCCAGGTTTAATATTCAGATTCAACACCTTCCTCATCATGCCAACTGGGAAAACGGTGAAGAAGGTAGGAGAGAATTGTCAACTTCCTATGGATGTGCTTGATATCATTTCCGGAACACTAGATATCGATGACCACTTTCAGTTTGCCGGTGTGTGCAAGAATTGGAGGTCTTTTCATAAAATTTACTGGAGAAATTTCTTGGCATCCCAAGAACCATTACTTCTTCAAGAAGTGTATCATCCTAGTGTATCATATTCCTTTATTAGCACACCCGGCCAAAAAGTTTATTGCTCGAAGATGATGGAGTCCCTCGTACGGTGGTGCGCATATGTCACTTCTTCTAGCGGTTATTGTGTCATGGCGAATTACCACAATAATTCACTTATTCTAATAAACCCATTTACAAGAAAAAAGAAGGTAGTCAATTTCCCTACCTCTGGAAGTAACAAACTTAGAATTGACCGTGCCTTGCTTGCTTTTAGCAAATGCTCTAACGAATTTGTCTTGGTGGTTTTAATCAAACAATATTGTTTGCATGTCTATCAATCTCGATATTCTGGTTGGGTTACTTATTCGACAATGGAAAAGTCAGGGAGGGTTGTTGACTTTGTGGTTTTGCATAATATAATATATGTTGTCACTCATAAGGCCAATATAAGAGTACTTAGCTTGAATTCTGCAGATATTAGATTTCTAAATTTGAAGAGTACTCCCAATGTACCACTTTCCAGGTCCCTTAGGTTGGTTAGCTGTGATGAACAACTTTTGGCGGTAGCCTTGTAA

Protein sequence

>Msa1030840

MATTSRGHTSLETGVERKKNMVTLFPDSLRRKGPGPFFGECKELNRTGPLKDLMTLAGSVGVNWFTNREMNIPRNNGHDDALEFLLKEVKLACKYDNKQGFKKRNVTGIAAVTNRYRQPPRSEQPPERENREEEEDGAVLKTGEGKDEAVLALGTWKEKTKRCQNLDNKLKYDDFLKLIKDFKAERIDIRGVQGRVRELLQGHPGLIFRFNTFLIMPTGKTVKKVGENCQLPMDVLDIISGTLDIDDHFQFAGVCKNWRSFHKIYWRNFLASQEPLLLQEVYHPSVSYSFISTPGQKVYCSKMMESLVRWCAYVTSSSGYCVMANYHNNSLILINPFTRKKKVVNFPTSGSNKLRIDRALLAFSKCSNEFVLVVLIKQYCLHVYQSRYSGWVTYSTMEKSGRVVDFVVLHNIIYVVTHKANIRVLSLNSADIRFLNLKSTPNVPLSRSLRLVSCDEQLLAVAL*