AlfalfaGEDB | Msa1032080

M. sativa cultivar zhongmu-4 / Msa1032080

KEGG: K10523
GO: GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0031668 GO:0033554 GO:0042221 GO:0042631 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071470 GO:0071472 GO:0071496 GO:0104004 GO:1901700 GO:1901701
PFAM: PF00651.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1032080	ABD28533.1	89.573	422	3	4	1	381	1	422	0.0	754

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1032080	sp\|Q9SRV1\|BPM4_ARATH	66.830	407	86	9	8	367	36	440	3.77e-180	511

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1032080	Q2HVB4	89.573	422	3	4	1	381	1	422	0.0	754

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TFs/TRs:

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Gene ID	Type	Classification
Msa1032080	TR	TRAF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1032080	MtrunA17_Chr7g0254001	89.573	422	3	4	1	381	1	422	0.0	754
Msa1032080	MtrunA17_Chr5g0440341	63.636	385	96	6	10	351	23	406	8.40e-169	477
Msa1032080	MtrunA17_Chr7g0259501	49.340	379	143	8	17	351	36	409	9.34e-118	348
Msa1032080	MtrunA17_Chr1g0185861	49.737	380	142	8	18	353	41	415	9.33e-116	343
Msa1032080	MtrunA17_Chr4g0002921	64.634	164	37	2	16	158	23	186	2.55e-68	219
Msa1032080	MtrunA17_Chr3g0112351	42.222	90	49	1	198	287	7	93	6.52e-15	70.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1032080	AT3G03740.1	66.830	407	86	9	8	367	36	440	0.0	511
Msa1032080	AT3G43700.1	58.376	394	119	7	4	352	21	414	3.42e-151	433
Msa1032080	AT5G21010.1	56.962	395	121	8	6	352	16	409	2.42e-146	421
Msa1032080	AT3G43700.2	57.440	336	99	6	4	295	21	356	5.69e-129	375
Msa1032080	AT3G43700.3	58.308	331	94	6	4	290	21	351	1.17e-128	374
Msa1032080	AT3G06190.1	48.608	395	152	9	2	351	16	404	2.55e-113	337
Msa1032080	AT2G39760.1	48.205	390	150	9	10	352	16	400	1.58e-111	332
Msa1032080	AT5G19000.1	47.632	380	148	9	17	351	32	405	3.87e-107	321
Msa1032080	AT5G19000.3	47.632	380	148	9	17	351	32	405	3.87e-107	321
Msa1032080	AT5G19000.2	43.614	415	148	9	17	351	32	440	1.38e-101	308

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Find 116 sgRNAs with CRISPR-Local

Find 901 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGGGCCCACACACTT+CGG	0.579983	7_1:-66928555	None:intergenic
AAAGGCTACTCACTTGCTAA+AGG	0.511130	7_1:+66917293	Msa1032080:CDS
AAGGAAAATGCCGAAGTGTG+TGG	0.618132	7_1:+66928545	Msa1032080:CDS
AATAAACAAACTCACCAACA+AGG	0.669992	7_1:-66919321	None:intergenic
AATACTAAGGGAAGAACTGC+AGG	0.564752	7_1:-66929177	None:intergenic
AATCTGCATCCAACGGTTTA+TGG	0.211046	7_1:-66929112	None:intergenic
AATGCTCATGGTGATGGTAG+TGG	0.588506	7_1:-66917204	None:intergenic
ACAAACCTGGGAAAACGGAG+TGG	0.690303	7_1:+66928615	Msa1032080:CDS
ACAACAATAAGTCCCCTATT+TGG	0.318709	7_1:+66928773	Msa1032080:three_prime_UTR
ACAAGCTTGTTATGGCAGCC+CGG	0.567478	7_1:+66918777	Msa1032080:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATAAGCAGAATTATCTTCT+GGG	-	chr7_1:66917406-66917425	None:intergenic	30.0%
ACATAAGCAGAATTATCTTC+TGG	-	chr7_1:66917407-66917426	None:intergenic	30.0%
TGAACTTTATGTTTGCCATT+AGG	-	chr7_1:66917506-66917525	None:intergenic	30.0%
AACATACACTAAAGCTAGTT+GGG	-	chr7_1:66917773-66917792	None:intergenic	30.0%
AAACATACACTAAAGCTAGT+TGG	-	chr7_1:66917774-66917793	None:intergenic	30.0%
TTTCAGTAAAAGCTACACTT+TGG	-	chr7_1:66917839-66917858	None:intergenic	30.0%
CAATTAAACATGCACTTATG+CGG	+	chr7_1:66917897-66917916	Msa1032080:intron	30.0%
AGGACACAAAACATCTTAAT+TGG	-	chr7_1:66918017-66918036	None:intergenic	30.0%
TGTTAACTCGCTAAAATTCA+AGG	-	chr7_1:66918037-66918056	None:intergenic	30.0%
ACAATTTAAATCTCGACATC+AGG	-	chr7_1:66918216-66918235	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	66917150	66929188	66917150	ID=Msa1032080;Name=Msa1032080
chr7_1	mRNA	66917150	66929188	66917150	ID=Msa1032080-mRNA-1;Parent=Msa1032080;Name=Msa1032080-mRNA-1;_AED=0.10;_eAED=0.13;_QI=68\|0.33\|0.42\|1\|0.16\|0\|7\|451\|381
chr7_1	exon	66917150	66917395	66917150	ID=Msa1032080-mRNA-1:exon:15209;Parent=Msa1032080-mRNA-1
chr7_1	exon	66917456	66917585	66917456	ID=Msa1032080-mRNA-1:exon:15210;Parent=Msa1032080-mRNA-1
chr7_1	exon	66918544	66918714	66918544	ID=Msa1032080-mRNA-1:exon:15211;Parent=Msa1032080-mRNA-1
chr7_1	exon	66918766	66918880	66918766	ID=Msa1032080-mRNA-1:exon:15212;Parent=Msa1032080-mRNA-1
chr7_1	exon	66919049	66919328	66919049	ID=Msa1032080-mRNA-1:exon:15213;Parent=Msa1032080-mRNA-1
chr7_1	exon	66928440	66929003	66928440	ID=Msa1032080-mRNA-1:exon:15214;Parent=Msa1032080-mRNA-1
chr7_1	exon	66929030	66929188	66929030	ID=Msa1032080-mRNA-1:exon:15215;Parent=Msa1032080-mRNA-1
chr7_1	five_prime_UTR	66917150	66917217	66917150	ID=Msa1032080-mRNA-1:five_prime_utr;Parent=Msa1032080-mRNA-1
chr7_1	CDS	66917218	66917395	66917218	ID=Msa1032080-mRNA-1:cds;Parent=Msa1032080-mRNA-1
chr7_1	CDS	66917456	66917585	66917456	ID=Msa1032080-mRNA-1:cds;Parent=Msa1032080-mRNA-1
chr7_1	CDS	66918544	66918714	66918544	ID=Msa1032080-mRNA-1:cds;Parent=Msa1032080-mRNA-1
chr7_1	CDS	66918766	66918880	66918766	ID=Msa1032080-mRNA-1:cds;Parent=Msa1032080-mRNA-1
chr7_1	CDS	66919049	66919328	66919049	ID=Msa1032080-mRNA-1:cds;Parent=Msa1032080-mRNA-1
chr7_1	CDS	66928440	66928711	66928440	ID=Msa1032080-mRNA-1:cds;Parent=Msa1032080-mRNA-1
chr7_1	three_prime_UTR	66928712	66929003	66928712	ID=Msa1032080-mRNA-1:three_prime_utr;Parent=Msa1032080-mRNA-1
chr7_1	three_prime_UTR	66929030	66929188	66929030	ID=Msa1032080-mRNA-1:three_prime_utr;Parent=Msa1032080-mRNA-1

Gene Sequence

>Msa1032080

ATGAGCATTCTGTCATCACGAACAAGTTCCCGTTCCGTAACAGAAACGGTAAACGGTTCACACAAGTTCGTAATCAAAGGCTACTCACTTGCTAAAGGAATGGGAGTTGGTAAACACATAGCCAGCGAGACTTTCACCGTCGGTGGTTACCAATGGGCAATTTACTTCTACCCCGACGGTACCGATGTTAGAGCTCTTTTTGAACTCACTTTGCTTGATCAGAGTCCTAATGGCAAACATAAAGTTCATAGTCATTTTGATCGTTCTCTTGAGAGTGGTCCTTATACTCTTAAGTATCGCGGCAGCATGGGGTATAAGCGGTTTTTCAAACGTGCTCAACTCGAGGCGTCGTCCTTCCTTAAGGATGACTGTTTGAAGATAAACTGCACCGTTGGTGTTGTTGTGTCGTCCATAGATTGCTCTAAATTGACCACCATACATGTTCCTGAATCTGACATTGGATCTCATTTTGGCATGCTGTTTCATGCACACAAGCTTGTTATGGCAGCCCGGTCAACTGCATTTGAAACTGAATTTTTCAATAGTATGGAGGAAGATGACCGTGATGTAGTTGTTACGGACATGGAACCTAAGGCTTTGCTTCATTTTATTTATCGAGACACTCTTATAGAAGATGAAGATTTCTTCATGTCAAGTTCATCGTTCCTGCCTTCAATATCTGAAACATTTGCAGCAAAATTATTAGCTGCTGCGGAAAAGTATGATTTGCCTAGACTTAAGTTGATGTGCGAGTCTGTACTTTGCAAAGATATATCTATAGATTCTGTTGCCTATATTCTGGCTCTTGCTGATCGCTATCATGCCACGGAGTTAAAGTCCATCTGTCTACAATTTTCTGCTGAAAACCTTGTTGCTGTGATGCAATCTGATGGTTTTGAGTATCTAAAAGAAAACTGTCCGTTGCTGCAATCAGAACTGCTTAAGACAGTTGCAGGAGGAGAAGAGGAATTTAGTGGTGAAGGAAAATGCCGAAGTGTGTGGGCCCAAGTTTCTGATGGCGGTGAGACTAATGATAGGAGCGTAAGACAACAAACCTGGGAAAACGGAGTGGAAAGAGGTCAGAATTTATGGGTTAACCTTTCTGATGGGGTTAACAATGATCGGAGTCCAGGGCAAGAAGCTTGA

Protein sequence

>Msa1032080

MSILSSRTSSRSVTETVNGSHKFVIKGYSLAKGMGVGKHIASETFTVGGYQWAIYFYPDGTDVRALFELTLLDQSPNGKHKVHSHFDRSLESGPYTLKYRGSMGYKRFFKRAQLEASSFLKDDCLKINCTVGVVVSSIDCSKLTTIHVPESDIGSHFGMLFHAHKLVMAARSTAFETEFFNSMEEDDRDVVVTDMEPKALLHFIYRDTLIEDEDFFMSSSSFLPSISETFAAKLLAAAEKYDLPRLKLMCESVLCKDISIDSVAYILALADRYHATELKSICLQFSAENLVAVMQSDGFEYLKENCPLLQSELLKTVAGGEEEFSGEGKCRSVWAQVSDGGETNDRSVRQQTWENGVERGQNLWVNLSDGVNNDRSPGQEA*