Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1032460 | XP_003624740.1 | 95.849 | 265 | 5 | 2 | 1 | 259 | 1 | 265 | 0.0 | 520 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1032460 | sp|Q6X7J3|WOX11_ARATH | 47.778 | 270 | 105 | 8 | 12 | 259 | 8 | 263 | 3.95e-59 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1032460 | B7FL74 | 95.849 | 265 | 5 | 2 | 1 | 259 | 1 | 265 | 0.0 | 520 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1032460 | TF | HB-WOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1032460 | MtrunA17_Chr7g0254251 | 95.849 | 265 | 5 | 2 | 1 | 259 | 1 | 265 | 0.0 | 520 |
| Msa1032460 | MtrunA17_Chr6g0460691 | 46.809 | 282 | 96 | 7 | 20 | 259 | 24 | 293 | 2.19e-59 | 190 |
| Msa1032460 | MtrunA17_Chr7g0223471 | 66.197 | 71 | 24 | 0 | 18 | 88 | 37 | 107 | 3.54e-28 | 111 |
| Msa1032460 | MtrunA17_Chr2g0283141 | 61.538 | 78 | 29 | 1 | 11 | 87 | 37 | 114 | 1.44e-26 | 107 |
| Msa1032460 | MtrunA17_Chr2g0283141 | 43.077 | 65 | 37 | 0 | 195 | 259 | 341 | 405 | 6.57e-14 | 70.9 |
| Msa1032460 | MtrunA17_Chr4g0043891 | 39.024 | 82 | 46 | 1 | 27 | 104 | 7 | 88 | 1.64e-15 | 73.9 |
| Msa1032460 | MtrunA17_Chr8g0392991 | 44.595 | 74 | 38 | 1 | 25 | 95 | 93 | 166 | 4.68e-14 | 70.9 |
| Msa1032460 | MtrunA17_Chr4g0031341 | 43.077 | 65 | 37 | 0 | 28 | 92 | 25 | 89 | 1.18e-13 | 68.9 |
| Msa1032460 | MtrunA17_Chr1g0212511 | 47.692 | 65 | 33 | 1 | 26 | 90 | 83 | 146 | 3.53e-13 | 67.8 |
| Msa1032460 | MtrunA17_Chr3g0144021 | 44.444 | 63 | 35 | 0 | 26 | 88 | 80 | 142 | 3.29e-12 | 64.3 |
| Msa1032460 | MtrunA17_Chr7g0238431 | 42.188 | 64 | 37 | 0 | 24 | 87 | 4 | 67 | 4.05e-12 | 63.5 |
| Msa1032460 | MtrunA17_Chr5g0436661 | 31.579 | 95 | 64 | 1 | 5 | 99 | 10 | 103 | 4.17e-12 | 63.2 |
| Msa1032460 | MtrunA17_Chr1g0153171 | 38.889 | 90 | 52 | 1 | 3 | 92 | 68 | 154 | 5.47e-12 | 63.9 |
| Msa1032460 | MtrunA17_Chr5g0405351 | 41.270 | 63 | 36 | 1 | 27 | 88 | 29 | 91 | 6.28e-12 | 64.3 |
| Msa1032460 | MtrunA17_Chr7g0222981 | 42.188 | 64 | 37 | 0 | 25 | 88 | 65 | 128 | 7.84e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1032460 | AT3G03660.1 | 47.778 | 270 | 105 | 8 | 12 | 259 | 8 | 263 | 4.01e-60 | 191 |
| Msa1032460 | AT3G03660.4 | 47.778 | 270 | 105 | 8 | 12 | 259 | 8 | 263 | 2.49e-59 | 190 |
| Msa1032460 | AT3G03660.2 | 45.151 | 299 | 99 | 9 | 12 | 259 | 8 | 292 | 1.81e-57 | 185 |
| Msa1032460 | AT3G03660.3 | 45.151 | 299 | 99 | 9 | 12 | 259 | 8 | 292 | 1.26e-56 | 184 |
| Msa1032460 | AT5G17810.3 | 44.528 | 265 | 109 | 8 | 19 | 259 | 12 | 262 | 2.57e-52 | 171 |
| Msa1032460 | AT5G17810.1 | 44.697 | 264 | 111 | 8 | 19 | 259 | 12 | 263 | 3.71e-51 | 168 |
| Msa1032460 | AT5G17810.2 | 44.697 | 264 | 111 | 8 | 19 | 259 | 12 | 263 | 3.71e-51 | 168 |
| Msa1032460 | AT2G33880.1 | 63.235 | 68 | 25 | 0 | 20 | 87 | 47 | 114 | 3.03e-25 | 103 |
| Msa1032460 | AT2G33880.1 | 45.455 | 55 | 30 | 0 | 205 | 259 | 323 | 377 | 6.27e-12 | 65.1 |
| Msa1032460 | AT2G33880.2 | 63.235 | 68 | 25 | 0 | 20 | 87 | 47 | 114 | 3.76e-25 | 102 |
| Msa1032460 | AT2G33880.2 | 45.455 | 55 | 30 | 0 | 205 | 259 | 323 | 377 | 7.34e-12 | 65.1 |
| Msa1032460 | AT5G45980.1 | 55.263 | 76 | 34 | 0 | 12 | 87 | 39 | 114 | 5.35e-24 | 99.0 |
| Msa1032460 | AT1G20700.2 | 35.714 | 84 | 54 | 0 | 25 | 108 | 30 | 113 | 2.01e-13 | 66.6 |
| Msa1032460 | AT1G46480.2 | 40.230 | 87 | 43 | 2 | 4 | 88 | 71 | 150 | 4.23e-13 | 66.6 |
| Msa1032460 | AT5G59340.1 | 40.000 | 65 | 39 | 0 | 27 | 91 | 13 | 77 | 5.51e-13 | 67.4 |
| Msa1032460 | AT1G20700.1 | 35.714 | 84 | 54 | 0 | 25 | 108 | 92 | 175 | 6.57e-13 | 66.2 |
| Msa1032460 | AT1G20700.3 | 35.714 | 84 | 54 | 0 | 25 | 108 | 92 | 175 | 6.98e-13 | 66.2 |
| Msa1032460 | AT4G35550.1 | 43.750 | 64 | 36 | 0 | 25 | 88 | 96 | 159 | 8.02e-13 | 67.0 |
| Msa1032460 | AT3G18010.1 | 38.806 | 67 | 41 | 0 | 25 | 91 | 73 | 139 | 1.78e-12 | 66.6 |
| Msa1032460 | AT1G46480.1 | 39.326 | 89 | 45 | 2 | 4 | 90 | 71 | 152 | 3.36e-12 | 65.1 |
| Msa1032460 | AT2G28610.1 | 42.623 | 61 | 35 | 0 | 27 | 87 | 7 | 67 | 5.49e-12 | 64.3 |
| Msa1032460 | AT2G17950.1 | 41.176 | 68 | 39 | 1 | 27 | 93 | 37 | 104 | 1.27e-11 | 63.9 |
| Msa1032460 | AT3G11260.1 | 39.683 | 63 | 38 | 0 | 28 | 90 | 24 | 86 | 3.76e-11 | 60.8 |
| Msa1032460 | AT5G05770.1 | 37.313 | 67 | 42 | 0 | 28 | 94 | 29 | 95 | 8.29e-11 | 58.5 |
Find 65 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGAGTGATAGTTGAAATT+AGG | 0.234117 | 7_1:-67377910 | None:intergenic |
| TCTTGTTTAAATGATTCTTC+TGG | 0.294809 | 7_1:+67377748 | Msa1032460:CDS |
| TGTTGGGTTGGAGTGTTGTT+GGG | 0.318471 | 7_1:-67377367 | None:intergenic |
| AGAAAACTTCTTGAGAAATT+CGG | 0.326558 | 7_1:+67377514 | Msa1032460:CDS |
| GTTGGGTTGGAGTGTTGTTG+GGG | 0.328214 | 7_1:-67377366 | None:intergenic |
| ATGAGAATTTGTTCTGGTTT+TGG | 0.333304 | 7_1:-67377430 | None:intergenic |
| GAGATCTAGACCGGCGGTTT+TGG | 0.333606 | 7_1:-67377570 | None:intergenic |
| CAAGTGTGGCCTGCTGCATC+TGG | 0.348372 | 7_1:-67377606 | None:intergenic |
| AAGATGCCATGTTCATTTGT+AGG | 0.357603 | 7_1:-67380411 | None:intergenic |
| ATGTTGGGTTGGAGTGTTGT+TGG | 0.365481 | 7_1:-67377368 | None:intergenic |
| ACATGGTGAAAGCTACTTTC+TGG | 0.379822 | 7_1:+67380449 | Msa1032460:CDS |
| GGGTTGGAGTGTTGTTGGGG+GGG | 0.381125 | 7_1:-67377363 | None:intergenic |
| CCATGTTCATTTGTAGGAAC+TGG | 0.385723 | 7_1:-67380405 | None:intergenic |
| TTGGGTTGGAGTGTTGTTGG+GGG | 0.394607 | 7_1:-67377365 | None:intergenic |
| CTAGACATCAAAACAGTGTT+TGG | 0.400410 | 7_1:+67380348 | Msa1032460:CDS |
| TCATGTGGTGGTGTTCTTAG+TGG | 0.413935 | 7_1:+67377784 | Msa1032460:CDS |
| CCTGCTGCATCTGGCGTTGT+CGG | 0.413984 | 7_1:-67377597 | None:intergenic |
| TCAAGTATGAGAATTTGTTC+TGG | 0.415342 | 7_1:-67377436 | None:intergenic |
| CCGACAACGCCAGATGCAGC+AGG | 0.426272 | 7_1:+67377597 | Msa1032460:CDS |
| GGTGTCCACCTTGACCTAAC+CGG | 0.426373 | 7_1:-67377409 | None:intergenic |
| TGGGTTGGAGTGTTGTTGGG+GGG | 0.427678 | 7_1:-67377364 | None:intergenic |
| TGGCAACAGTGTTTATCAAT+GGG | 0.442136 | 7_1:+67380298 | Msa1032460:CDS |
| AAGTGCAATTCCTTGTGATA+TGG | 0.444028 | 7_1:+67377687 | Msa1032460:CDS |
| GGAGGTGCTAGTAATATAAC+AGG | 0.444664 | 7_1:+67380273 | Msa1032460:CDS |
| TTGGCAACAGTGTTTATCAA+TGG | 0.459800 | 7_1:+67380297 | Msa1032460:CDS |
| CCGAGAAAACTGAACCGGTT+AGG | 0.473633 | 7_1:+67377395 | Msa1032460:CDS |
| TAGTTGAAATTAGGAGAAAG+AGG | 0.501074 | 7_1:-67377901 | None:intergenic |
| CACCATGCCACTGTTGAAGA+TGG | 0.505097 | 7_1:-67377461 | None:intergenic |
| GGTTCTTCCTCTTCATCATG+TGG | 0.507710 | 7_1:+67377769 | Msa1032460:CDS |
| GTGATGTTAGTTCATTCCTC+TGG | 0.509716 | 7_1:+67380378 | Msa1032460:CDS |
| CCTAATTTCAACTATCACTC+TGG | 0.510567 | 7_1:+67377910 | Msa1032460:CDS |
| TGCTAGTAATATAACAGGAT+TGG | 0.515623 | 7_1:+67380278 | Msa1032460:CDS |
| TTCTCGGAACCATGTTGGGT+TGG | 0.525597 | 7_1:-67377379 | None:intergenic |
| TGGTTCCGAGAAAACTGAAC+CGG | 0.529515 | 7_1:+67377390 | Msa1032460:CDS |
| GTGATGCTAACGTCTTCTAC+TGG | 0.530664 | 7_1:+67377545 | Msa1032460:CDS |
| AGTGGTCAACAAGGCATGGA+TGG | 0.541797 | 7_1:+67377802 | Msa1032460:CDS |
| TGGTATTATTAAGGATATGG+AGG | 0.551703 | 7_1:+67380255 | Msa1032460:intron |
| TGAAATTAGGAGAAAGAGGA+GGG | 0.553578 | 7_1:-67377897 | None:intergenic |
| CTTGAGAAATTCGGCAACGT+CGG | 0.555714 | 7_1:+67377523 | Msa1032460:CDS |
| ATTTCTTTGCTGATCAAGTG+TGG | 0.555910 | 7_1:-67377620 | None:intergenic |
| AACACCACCACATGATGAAG+AGG | 0.558375 | 7_1:-67377776 | None:intergenic |
| TTGAAATTAGGAGAAAGAGG+AGG | 0.567678 | 7_1:-67377898 | None:intergenic |
| GCTGCATCTGGCGTTGTCGG+CGG | 0.572272 | 7_1:-67377594 | None:intergenic |
| TCTTCCTCTTCATCATGTGG+TGG | 0.579085 | 7_1:+67377772 | Msa1032460:CDS |
| AGAAGAATCATTTAAACAAG+AGG | 0.579493 | 7_1:-67377746 | None:intergenic |
| ATTGCAACAGAAATTCAAGC+AGG | 0.580804 | 7_1:+67380321 | Msa1032460:CDS |
| TGATCAGCAAAGAAATCAGA+TGG | 0.591537 | 7_1:+67377627 | Msa1032460:CDS |
| TCTTAGTGGTCAACAAGGCA+TGG | 0.594370 | 7_1:+67377798 | Msa1032460:CDS |
| CCAGTTCCTACAAATGAACA+TGG | 0.595290 | 7_1:+67380405 | Msa1032460:CDS |
| AGAATCATTTAAACAAGAGG+AGG | 0.602089 | 7_1:-67377743 | None:intergenic |
| AGAGGAGGGCACAAAAGTGA+TGG | 0.605244 | 7_1:-67377883 | None:intergenic |
| AAACTGAACCGGTTAGGTCA+AGG | 0.615654 | 7_1:+67377401 | Msa1032460:CDS |
| AACAACACTCCAACCCAACA+TGG | 0.616195 | 7_1:+67377370 | Msa1032460:CDS |
| GTCCATCTTCAACAGTGGCA+TGG | 0.623516 | 7_1:+67377459 | Msa1032460:CDS |
| TCTACTGGTTCCAAAACCGC+CGG | 0.624539 | 7_1:+67377560 | Msa1032460:CDS |
| CTTGAGTCCATCTTCAACAG+TGG | 0.626929 | 7_1:+67377454 | Msa1032460:CDS |
| GGTTCAAACCAACCCAACCA+TGG | 0.628192 | 7_1:+67377708 | Msa1032460:CDS |
| CCTCAGCAAGTTGTTAACGA+TGG | 0.634528 | 7_1:+67377661 | Msa1032460:CDS |
| CCATCGTTAACAACTTGCTG+AGG | 0.647740 | 7_1:-67377661 | None:intergenic |
| TTGCAACAGAAATTCAAGCA+GGG | 0.656089 | 7_1:+67380322 | Msa1032460:CDS |
| TTGGTTTGAACCATATCACA+AGG | 0.660599 | 7_1:-67377697 | None:intergenic |
| GGTGTTCTTAGTGGTCAACA+AGG | 0.660710 | 7_1:+67377793 | Msa1032460:CDS |
| TGTAGGAACTGGCACACCAG+AGG | 0.661943 | 7_1:-67380394 | None:intergenic |
| TTGATTCAGAGCTTGCAACA+TGG | 0.664561 | 7_1:+67380432 | Msa1032460:CDS |
| CTGAACCGGTTAGGTCAAGG+TGG | 0.696695 | 7_1:+67377404 | Msa1032460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATTATTTTAAAATCCA+TGG | + | chr7_1:67377981-67378000 | Msa1032460:intron | 10.0% |
| !! | AAATAATACAAAATTATTTG+TGG | - | chr7_1:67378063-67378082 | None:intergenic | 10.0% |
| !! | TTATTAAAACTTTATAAAAC+GGG | + | chr7_1:67378808-67378827 | Msa1032460:intron | 10.0% |
| !! | TCAATTAAATTATGAATAAT+TGG | + | chr7_1:67378978-67378997 | Msa1032460:intron | 10.0% |
| !! | CAATTAAATTATGAATAATT+GGG | + | chr7_1:67378979-67378998 | Msa1032460:intron | 10.0% |
| !! | AAAAAAAAAAACATAATCTA+GGG | - | chr7_1:67379514-67379533 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAACATAATCT+AGG | - | chr7_1:67379515-67379534 | None:intergenic | 10.0% |
| !!! | GAATAATTTTATATAAATGT+TGG | - | chr7_1:67379609-67379628 | None:intergenic | 10.0% |
| !!! | ATTTTATTTTGGTATTATTA+AGG | + | chr7_1:67380246-67380265 | Msa1032460:intron | 10.0% |
| !! | GAATAATACAAAATTATTTG+TGG | - | chr7_1:67378098-67378117 | None:intergenic | 15.0% |
| !! | AAATTTATCTAAATTGGATT+AGG | - | chr7_1:67378200-67378219 | None:intergenic | 15.0% |
| !!! | AGTTTGAAATTTATCTAAAT+TGG | - | chr7_1:67378206-67378225 | None:intergenic | 15.0% |
| !!! | AAATTTGTTTATTATATGCA+TGG | + | chr7_1:67378232-67378251 | Msa1032460:intron | 15.0% |
| !! | AAAAAAAATAAGATTAGAGA+AGG | + | chr7_1:67378305-67378324 | Msa1032460:intron | 15.0% |
| !! | ATCATAATTAACAATTTCAT+TGG | + | chr7_1:67378346-67378365 | Msa1032460:intron | 15.0% |
| !!! | AATTATATTATTTCTCAGAT+AGG | + | chr7_1:67378504-67378523 | Msa1032460:intron | 15.0% |
| !!! | TTGACTTTTTTTAAAAGTTA+AGG | + | chr7_1:67378547-67378566 | Msa1032460:intron | 15.0% |
| !!! | TGACTTTTTTTAAAAGTTAA+GGG | + | chr7_1:67378548-67378567 | Msa1032460:intron | 15.0% |
| !! | TTAACTTATATAAGTTAACT+TGG | - | chr7_1:67378575-67378594 | None:intergenic | 15.0% |
| !!! | AACTTTAAAATCGATTAATT+TGG | - | chr7_1:67378602-67378621 | None:intergenic | 15.0% |
| !!! | ATTAATCGATTTTAAAGTTA+AGG | + | chr7_1:67378603-67378622 | Msa1032460:intron | 15.0% |
| !!! | TTAATCGATTTTAAAGTTAA+GGG | + | chr7_1:67378604-67378623 | Msa1032460:intron | 15.0% |
| !! | TGATAAGGTAATATAAAATA+TGG | + | chr7_1:67378758-67378777 | Msa1032460:intron | 15.0% |
| !! | TTAAAAAAAGTTCATGTTTA+TGG | + | chr7_1:67379271-67379290 | Msa1032460:intron | 15.0% |
| !!! | GAACTTGTAATTTTTTTTAA+CGG | - | chr7_1:67379639-67379658 | None:intergenic | 15.0% |
| !!! | TTGTAAATTTTCAATTAAGT+TGG | - | chr7_1:67379714-67379733 | None:intergenic | 15.0% |
| !!! | TATATAGCAGATTTTATTTT+GGG | - | chr7_1:67379785-67379804 | None:intergenic | 15.0% |
| !!! | ATATATAGCAGATTTTATTT+TGG | - | chr7_1:67379786-67379805 | None:intergenic | 15.0% |
| !!! | ATGTTCTAATCATTTTATTT+TGG | + | chr7_1:67380235-67380254 | Msa1032460:intron | 15.0% |
| !!! | TTTTGATAGTTTCTTCTTTT+GGG | - | chr7_1:67377492-67377511 | None:intergenic | 20.0% |
| !!! | ATTTTGATAGTTTCTTCTTT+TGG | - | chr7_1:67377493-67377512 | None:intergenic | 20.0% |
| !! | AGATTCACATATGTAAAATT+TGG | - | chr7_1:67378427-67378446 | None:intergenic | 20.0% |
| !!! | ATATAATTATACCGAACTTT+TGG | - | chr7_1:67378492-67378511 | None:intergenic | 20.0% |
| !! | CGTTAACTTAAATAAGTTAA+AGG | + | chr7_1:67378636-67378655 | Msa1032460:intron | 20.0% |
| !!! | TAAATTTTCAATTAAGTTGG+TGG | - | chr7_1:67379711-67379730 | None:intergenic | 20.0% |
| !!! | ATATAGCAGATTTTATTTTG+GGG | - | chr7_1:67379784-67379803 | None:intergenic | 20.0% |
| !! | CAAATTTGATTAACAATTCT+TGG | - | chr7_1:67379903-67379922 | None:intergenic | 20.0% |
| !! | CAAGAATTGTTAATCAAATT+TGG | + | chr7_1:67379901-67379920 | Msa1032460:intron | 20.0% |
| !!! | ATCACTTTAACTTAATTGTT+TGG | + | chr7_1:67379961-67379980 | Msa1032460:intron | 20.0% |
| !! | TGTACAGATATGAAAATTAT+AGG | - | chr7_1:67380011-67380030 | None:intergenic | 20.0% |
| !!! | TTTTGGTATTATTAAGGATA+TGG | + | chr7_1:67380252-67380271 | Msa1032460:intron | 20.0% |
| !!! | TTTGATAGTTTCTTCTTTTG+GGG | - | chr7_1:67377491-67377510 | None:intergenic | 25.0% |
| ! | AGAAAACTTCTTGAGAAATT+CGG | + | chr7_1:67377514-67377533 | Msa1032460:CDS | 25.0% |
| ! | AGAAGAATCATTTAAACAAG+AGG | - | chr7_1:67377749-67377768 | None:intergenic | 25.0% |
| !! | TCTTGTTTAAATGATTCTTC+TGG | + | chr7_1:67377748-67377767 | Msa1032460:CDS | 25.0% |
| !! | TTTTCAGTTTCTTCTCAAAT+GGG | + | chr7_1:67377829-67377848 | Msa1032460:intron | 25.0% |
| !!! | CTTGTGATTTTAGTATGAAT+TGG | - | chr7_1:67378013-67378032 | None:intergenic | 25.0% |
| !!! | CTTATTTCAAAAGTTTTGTC+TGG | - | chr7_1:67378691-67378710 | None:intergenic | 25.0% |
| !! | ACGGGTTTTCTAAATTTTTT+AGG | + | chr7_1:67378826-67378845 | Msa1032460:intron | 25.0% |
| ! | GTTTCAAACAGTAACTAATT+AGG | + | chr7_1:67378851-67378870 | Msa1032460:intron | 25.0% |
| !! | AACATCAGATTTGGAATTTA+TGG | - | chr7_1:67379155-67379174 | None:intergenic | 25.0% |
| ! | AAAATCTGTAACATCAGATT+TGG | - | chr7_1:67379164-67379183 | None:intergenic | 25.0% |
| ! | TGCATATTTGAATTCATAGT+TGG | + | chr7_1:67379204-67379223 | Msa1032460:intron | 25.0% |
| !!! | CTTTTTTTAAACTAAGTGCA+TGG | - | chr7_1:67379261-67379280 | None:intergenic | 25.0% |
| ! | TGTTTATGGAATGATTGATT+AGG | + | chr7_1:67379285-67379304 | Msa1032460:intron | 25.0% |
| ! | GAAAAAAGTGAGAGAATAAA+AGG | - | chr7_1:67379443-67379462 | None:intergenic | 25.0% |
| !! | AAAAAACATAATCTAGGGTT+TGG | - | chr7_1:67379509-67379528 | None:intergenic | 25.0% |
| !!! | ATGAGAATTTGTTCTGGTTT+TGG | - | chr7_1:67377433-67377452 | None:intergenic | 30.0% |
| ! | TCAAGTATGAGAATTTGTTC+TGG | - | chr7_1:67377439-67377458 | None:intergenic | 30.0% |
| !! | TTGATAGTTTCTTCTTTTGG+GGG | - | chr7_1:67377490-67377509 | None:intergenic | 30.0% |
| AGAATCATTTAAACAAGAGG+AGG | - | chr7_1:67377746-67377765 | None:intergenic | 30.0% | |
| ! | GTTTTCAGTTTCTTCTCAAA+TGG | + | chr7_1:67377828-67377847 | Msa1032460:intron | 30.0% |
| TAGTTGAAATTAGGAGAAAG+AGG | - | chr7_1:67377904-67377923 | None:intergenic | 30.0% | |
| ! | AGGCTTTGATGTTAATATGT+TGG | - | chr7_1:67378180-67378199 | None:intergenic | 30.0% |
| ! | ATTAGAGAAGGCATATACAA+AGG | + | chr7_1:67378317-67378336 | Msa1032460:intron | 30.0% |
| !!! | TTTTAAGGTATGAAACGTGT+TGG | - | chr7_1:67378459-67378478 | None:intergenic | 30.0% |
| CGTTTCATACCTTAAAACAA+AGG | + | chr7_1:67378462-67378481 | Msa1032460:intron | 30.0% | |
| GTAACTAATTAGGTGAACTA+AGG | + | chr7_1:67378861-67378880 | Msa1032460:intron | 30.0% | |
| ! | GAAATAATGTTTTTCCCTGA+AGG | - | chr7_1:67378960-67378979 | None:intergenic | 30.0% |
| AAAGTGAGAGAATAAAAGGA+AGG | - | chr7_1:67379439-67379458 | None:intergenic | 30.0% | |
| AAATCATCTCATCTGATTGT+TGG | + | chr7_1:67379541-67379560 | Msa1032460:intron | 30.0% | |
| TGGTGAATAATTTCCAAAGA+GGG | - | chr7_1:67379569-67379588 | None:intergenic | 30.0% | |
| ATGGTGAATAATTTCCAAAG+AGG | - | chr7_1:67379570-67379589 | None:intergenic | 30.0% | |
| TGGTAAAAACTAGTGATGTA+TGG | - | chr7_1:67379589-67379608 | None:intergenic | 30.0% | |
| AGTTAAAAAAAATGTCGTCG+CGG | - | chr7_1:67379814-67379833 | None:intergenic | 30.0% | |
| AATTGTTTGGTTATCTACGA+TGG | + | chr7_1:67379974-67379993 | Msa1032460:intron | 30.0% | |
| ATTGTTTGGTTATCTACGAT+GGG | + | chr7_1:67379975-67379994 | Msa1032460:intron | 30.0% | |
| ! | TTGACTTCTTAATGATAACG+TGG | + | chr7_1:67380032-67380051 | Msa1032460:intron | 30.0% |
| GTGATTGTGATATGAAATTC+AGG | + | chr7_1:67380119-67380138 | Msa1032460:intron | 30.0% | |
| TTGTATTTGACCAATGTGTA+TGG | + | chr7_1:67380210-67380229 | Msa1032460:intron | 30.0% | |
| TGGTATTATTAAGGATATGG+AGG | + | chr7_1:67380255-67380274 | Msa1032460:intron | 30.0% | |
| TGCTAGTAATATAACAGGAT+TGG | + | chr7_1:67380278-67380297 | Msa1032460:CDS | 30.0% | |
| ATTTCTTTGCTGATCAAGTG+TGG | - | chr7_1:67377623-67377642 | None:intergenic | 35.0% | |
| TGATCAGCAAAGAAATCAGA+TGG | + | chr7_1:67377627-67377646 | Msa1032460:CDS | 35.0% | |
| AAGTGCAATTCCTTGTGATA+TGG | + | chr7_1:67377687-67377706 | Msa1032460:CDS | 35.0% | |
| ! | TTGGTTTGAACCATATCACA+AGG | - | chr7_1:67377700-67377719 | None:intergenic | 35.0% |
| !! | TCTTCTCAAATGGGTTTTCT+TGG | + | chr7_1:67377838-67377857 | Msa1032460:CDS | 35.0% |
| TGAAATTAGGAGAAAGAGGA+GGG | - | chr7_1:67377900-67377919 | None:intergenic | 35.0% | |
| TTGAAATTAGGAGAAAGAGG+AGG | - | chr7_1:67377901-67377920 | None:intergenic | 35.0% | |
| CCAGAGTGATAGTTGAAATT+AGG | - | chr7_1:67377913-67377932 | None:intergenic | 35.0% | |
| CCTAATTTCAACTATCACTC+TGG | + | chr7_1:67377910-67377929 | Msa1032460:CDS | 35.0% | |
| TCAACTATCACTCTGGTAAT+TGG | + | chr7_1:67377917-67377936 | Msa1032460:intron | 35.0% | |
| !!! | TTTGGAGTGCCTTTGTTTTA+AGG | - | chr7_1:67378474-67378493 | None:intergenic | 35.0% |
| ATCAATTCTGAGCTGTGATA+AGG | + | chr7_1:67378743-67378762 | Msa1032460:intron | 35.0% | |
| AAGGCAATATCTGTCTAATC+GGG | - | chr7_1:67378941-67378960 | None:intergenic | 35.0% | |
| GAAGGCAATATCTGTCTAAT+CGG | - | chr7_1:67378942-67378961 | None:intergenic | 35.0% | |
| ATTAGACAGATATTGCCTTC+AGG | + | chr7_1:67378942-67378961 | Msa1032460:intron | 35.0% | |
| TTAGACAGATATTGCCTTCA+GGG | + | chr7_1:67378943-67378962 | Msa1032460:intron | 35.0% | |
| ATTGGGATACAGTGTCTTAA+TGG | + | chr7_1:67378996-67379015 | Msa1032460:intron | 35.0% | |
| GGAATGATTGATTAGGTTAC+AGG | + | chr7_1:67379292-67379311 | Msa1032460:intron | 35.0% | |
| TGATTGATTAGGTTACAGGA+TGG | + | chr7_1:67379296-67379315 | Msa1032460:intron | 35.0% | |
| GATTGATTAGGTTACAGGAT+GGG | + | chr7_1:67379297-67379316 | Msa1032460:intron | 35.0% | |
| TTCATGCAACAATTCAAACG+CGG | - | chr7_1:67379363-67379382 | None:intergenic | 35.0% | |
| TGCATGAAAGTTGTTCTTTC+CGG | + | chr7_1:67379375-67379394 | Msa1032460:intron | 35.0% | |
| ! | AAGTAGCGTTCATGTTTTTC+CGG | - | chr7_1:67379397-67379416 | None:intergenic | 35.0% |
| ! | AAAACATGAACGCTACTTTC+CGG | + | chr7_1:67379399-67379418 | Msa1032460:intron | 35.0% |
| !!! | GGATCTATTGATTTTGCACA+AGG | - | chr7_1:67379690-67379709 | None:intergenic | 35.0% |
| ! | TTGGGGTAAAGTCTGAAATT+TGG | - | chr7_1:67379767-67379786 | None:intergenic | 35.0% |
| TAGAACATCACCATACACAT+TGG | - | chr7_1:67380223-67380242 | None:intergenic | 35.0% | |
| TTGGCAACAGTGTTTATCAA+TGG | + | chr7_1:67380297-67380316 | Msa1032460:CDS | 35.0% | |
| TGGCAACAGTGTTTATCAAT+GGG | + | chr7_1:67380298-67380317 | Msa1032460:CDS | 35.0% | |
| ATTGCAACAGAAATTCAAGC+AGG | + | chr7_1:67380321-67380340 | Msa1032460:CDS | 35.0% | |
| TTGCAACAGAAATTCAAGCA+GGG | + | chr7_1:67380322-67380341 | Msa1032460:CDS | 35.0% | |
| !!! | AACACTGTTTTGATGTCTAG+TGG | - | chr7_1:67380348-67380367 | None:intergenic | 35.0% |
| CTAGACATCAAAACAGTGTT+TGG | + | chr7_1:67380348-67380367 | Msa1032460:CDS | 35.0% | |
| AAGATGCCATGTTCATTTGT+AGG | - | chr7_1:67380414-67380433 | None:intergenic | 35.0% | |
| ! | AGTTTTCTCGGAACCATGTT+GGG | - | chr7_1:67377386-67377405 | None:intergenic | 40.0% |
| AACCACCAAAAACCATGGTT+GGG | - | chr7_1:67377723-67377742 | None:intergenic | 40.0% | |
| GTATGAATTGGATTGCTCCA+TGG | - | chr7_1:67378001-67378020 | None:intergenic | 40.0% | |
| !! | ACAAAGGCACTCCAAAAGTT+CGG | + | chr7_1:67378478-67378497 | Msa1032460:intron | 40.0% |
| TTAACCGTCTTCTTGACTCA+AGG | + | chr7_1:67379045-67379064 | Msa1032460:intron | 40.0% | |
| TAACCGTCTTCTTGACTCAA+GGG | + | chr7_1:67379046-67379065 | Msa1032460:intron | 40.0% | |
| ! | AAGGGGAAGTGTATGAGATA+AGG | + | chr7_1:67379064-67379083 | Msa1032460:intron | 40.0% |
| AGGATGGGTACAGAATAAAG+TGG | + | chr7_1:67379312-67379331 | Msa1032460:intron | 40.0% | |
| GGATGGGTACAGAATAAAGT+GGG | + | chr7_1:67379313-67379332 | Msa1032460:intron | 40.0% | |
| !! | TTTTCAAGCACGAACGTTTC+AGG | - | chr7_1:67379932-67379951 | None:intergenic | 40.0% |
| !! | GTTATCTACGATGGGTTGAA+AGG | + | chr7_1:67379983-67380002 | Msa1032460:intron | 40.0% |
| !! | GGAGGTGCTAGTAATATAAC+AGG | + | chr7_1:67380273-67380292 | Msa1032460:CDS | 40.0% |
| GTGATGTTAGTTCATTCCTC+TGG | + | chr7_1:67380378-67380397 | Msa1032460:CDS | 40.0% | |
| CCATGTTCATTTGTAGGAAC+TGG | - | chr7_1:67380408-67380427 | None:intergenic | 40.0% | |
| CCAGTTCCTACAAATGAACA+TGG | + | chr7_1:67380405-67380424 | Msa1032460:CDS | 40.0% | |
| TTGATTCAGAGCTTGCAACA+TGG | + | chr7_1:67380432-67380451 | Msa1032460:CDS | 40.0% | |
| !! | TGTTGGGTTGGAGTGTTGTT+GGG | - | chr7_1:67377370-67377389 | None:intergenic | 45.0% |
| !! | ATGTTGGGTTGGAGTGTTGT+TGG | - | chr7_1:67377371-67377390 | None:intergenic | 45.0% |
| AACAACACTCCAACCCAACA+TGG | + | chr7_1:67377370-67377389 | Msa1032460:CDS | 45.0% | |
| ! | CAGTTTTCTCGGAACCATGT+TGG | - | chr7_1:67377387-67377406 | None:intergenic | 45.0% |
| TGGTTCCGAGAAAACTGAAC+CGG | + | chr7_1:67377390-67377409 | Msa1032460:CDS | 45.0% | |
| !! | CCTAACCGGTTCAGTTTTCT+CGG | - | chr7_1:67377398-67377417 | None:intergenic | 45.0% |
| AAACTGAACCGGTTAGGTCA+AGG | + | chr7_1:67377401-67377420 | Msa1032460:CDS | 45.0% | |
| CTTGAGTCCATCTTCAACAG+TGG | + | chr7_1:67377454-67377473 | Msa1032460:CDS | 45.0% | |
| CTTGAGAAATTCGGCAACGT+CGG | + | chr7_1:67377523-67377542 | Msa1032460:CDS | 45.0% | |
| GTGATGCTAACGTCTTCTAC+TGG | + | chr7_1:67377545-67377564 | Msa1032460:CDS | 45.0% | |
| !! | CCATCGTTAACAACTTGCTG+AGG | - | chr7_1:67377664-67377683 | None:intergenic | 45.0% |
| CCTCAGCAAGTTGTTAACGA+TGG | + | chr7_1:67377661-67377680 | Msa1032460:CDS | 45.0% | |
| ! | ACCAACCCAACCATGGTTTT+TGG | + | chr7_1:67377715-67377734 | Msa1032460:CDS | 45.0% |
| ACCAAAAACCATGGTTGGGT+TGG | - | chr7_1:67377719-67377738 | None:intergenic | 45.0% | |
| !! | AACCCAACCATGGTTTTTGG+TGG | + | chr7_1:67377718-67377737 | Msa1032460:CDS | 45.0% |
| GAACCACCAAAAACCATGGT+TGG | - | chr7_1:67377724-67377743 | None:intergenic | 45.0% | |
| GGTTCTTCCTCTTCATCATG+TGG | + | chr7_1:67377769-67377788 | Msa1032460:CDS | 45.0% | |
| TCTTCCTCTTCATCATGTGG+TGG | + | chr7_1:67377772-67377791 | Msa1032460:CDS | 45.0% | |
| AACACCACCACATGATGAAG+AGG | - | chr7_1:67377779-67377798 | None:intergenic | 45.0% | |
| ! | TCATGTGGTGGTGTTCTTAG+TGG | + | chr7_1:67377784-67377803 | Msa1032460:CDS | 45.0% |
| GGTGTTCTTAGTGGTCAACA+AGG | + | chr7_1:67377793-67377812 | Msa1032460:CDS | 45.0% | |
| TCTTAGTGGTCAACAAGGCA+TGG | + | chr7_1:67377798-67377817 | Msa1032460:CDS | 45.0% | |
| AACCGTCTTCTTGACTCAAG+GGG | + | chr7_1:67379047-67379066 | Msa1032460:intron | 45.0% | |
| TTCCCCTTGAGTCAAGAAGA+CGG | - | chr7_1:67379052-67379071 | None:intergenic | 45.0% | |
| AACGCGGAACTGTCAAATCA+AGG | - | chr7_1:67379347-67379366 | None:intergenic | 45.0% | |
| !!! | ATTTTATTTTATTTTTTATG+AGG | + | chr7_1:67378267-67378286 | Msa1032460:intron | 5.0% |
| !! | TTTATTAAAACTTTATAAAA+CGG | + | chr7_1:67378807-67378826 | Msa1032460:intron | 5.0% |
| !! | TTGGGTTGGAGTGTTGTTGG+GGG | - | chr7_1:67377368-67377387 | None:intergenic | 50.0% |
| !! | GTTGGGTTGGAGTGTTGTTG+GGG | - | chr7_1:67377369-67377388 | None:intergenic | 50.0% |
| TTCTCGGAACCATGTTGGGT+TGG | - | chr7_1:67377382-67377401 | None:intergenic | 50.0% | |
| CCGAGAAAACTGAACCGGTT+AGG | + | chr7_1:67377395-67377414 | Msa1032460:CDS | 50.0% | |
| GTCCATCTTCAACAGTGGCA+TGG | + | chr7_1:67377459-67377478 | Msa1032460:CDS | 50.0% | |
| CACCATGCCACTGTTGAAGA+TGG | - | chr7_1:67377464-67377483 | None:intergenic | 50.0% | |
| !! | TCTACTGGTTCCAAAACCGC+CGG | + | chr7_1:67377560-67377579 | Msa1032460:CDS | 50.0% |
| GGTTCAAACCAACCCAACCA+TGG | + | chr7_1:67377708-67377727 | Msa1032460:CDS | 50.0% | |
| GGAGGAACCACCAAAAACCA+TGG | - | chr7_1:67377728-67377747 | None:intergenic | 50.0% | |
| AGTGGTCAACAAGGCATGGA+TGG | + | chr7_1:67377802-67377821 | Msa1032460:CDS | 50.0% | |
| ! | AGAGGAGGGCACAAAAGTGA+TGG | - | chr7_1:67377886-67377905 | None:intergenic | 50.0% |
| GAAGGAACAGAAACTGCAGC+CGG | - | chr7_1:67379421-67379440 | None:intergenic | 50.0% | |
| ! | CTGATTGTTGGTGCCCTCTT+TGG | + | chr7_1:67379553-67379572 | Msa1032460:intron | 50.0% |
| !! | TGGGTTGGAGTGTTGTTGGG+GGG | - | chr7_1:67377367-67377386 | None:intergenic | 55.0% |
| CTGAACCGGTTAGGTCAAGG+TGG | + | chr7_1:67377404-67377423 | Msa1032460:CDS | 55.0% | |
| GGTGTCCACCTTGACCTAAC+CGG | - | chr7_1:67377412-67377431 | None:intergenic | 55.0% | |
| ! | GAGATCTAGACCGGCGGTTT+TGG | - | chr7_1:67377573-67377592 | None:intergenic | 55.0% |
| TGTAGGAACTGGCACACCAG+AGG | - | chr7_1:67380397-67380416 | None:intergenic | 55.0% | |
| !! | GGGTTGGAGTGTTGTTGGGG+GGG | - | chr7_1:67377366-67377385 | None:intergenic | 60.0% |
| CCTGCTGCATCTGGCGTTGT+CGG | - | chr7_1:67377600-67377619 | None:intergenic | 60.0% | |
| CAAGTGTGGCCTGCTGCATC+TGG | - | chr7_1:67377609-67377628 | None:intergenic | 60.0% | |
| GTCGGCGGCGAGATCTAGAC+CGG | - | chr7_1:67377582-67377601 | None:intergenic | 65.0% | |
| GCTGCATCTGGCGTTGTCGG+CGG | - | chr7_1:67377597-67377616 | None:intergenic | 65.0% | |
| CCGACAACGCCAGATGCAGC+AGG | + | chr7_1:67377597-67377616 | Msa1032460:CDS | 65.0% | |
| GGCGGCGAGATCTAGACCGG+CGG | - | chr7_1:67377579-67377598 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 67377340 | 67380470 | 67377340 | ID=Msa1032460;Name=Msa1032460 |
| chr7_1 | mRNA | 67377340 | 67380470 | 67377340 | ID=Msa1032460-mRNA-1;Parent=Msa1032460;Name=Msa1032460-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|0.33|0.25|4|0|259 |
| chr7_1 | exon | 67377340 | 67377581 | 67377340 | ID=Msa1032460-mRNA-1:exon:15423;Parent=Msa1032460-mRNA-1 |
| chr7_1 | exon | 67377588 | 67377823 | 67377588 | ID=Msa1032460-mRNA-1:exon:15424;Parent=Msa1032460-mRNA-1 |
| chr7_1 | exon | 67377836 | 67377931 | 67377836 | ID=Msa1032460-mRNA-1:exon:15425;Parent=Msa1032460-mRNA-1 |
| chr7_1 | exon | 67380268 | 67380470 | 67380268 | ID=Msa1032460-mRNA-1:exon:15426;Parent=Msa1032460-mRNA-1 |
| chr7_1 | CDS | 67377340 | 67377581 | 67377340 | ID=Msa1032460-mRNA-1:cds;Parent=Msa1032460-mRNA-1 |
| chr7_1 | CDS | 67377588 | 67377823 | 67377588 | ID=Msa1032460-mRNA-1:cds;Parent=Msa1032460-mRNA-1 |
| chr7_1 | CDS | 67377836 | 67377931 | 67377836 | ID=Msa1032460-mRNA-1:cds;Parent=Msa1032460-mRNA-1 |
| chr7_1 | CDS | 67380268 | 67380470 | 67380268 | ID=Msa1032460-mRNA-1:cds;Parent=Msa1032460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
