AlfalfaGEDB | Msa1032460

M. sativa cultivar zhongmu-4 / Msa1032460

KEGG: K18490
GO: GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048364 GO:0048731 GO:0048830 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1032460	XP_003624740.1	95.849	265	5	2	1	259	1	265	0.0	520

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1032460	sp\|Q6X7J3\|WOX11_ARATH	47.778	270	105	8	12	259	8	263	3.95e-59	191

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1032460	B7FL74	95.849	265	5	2	1	259	1	265	0.0	520

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TFs/TRs:

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Gene ID	Type	Classification
Msa1032460	TF	HB-WOX

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1032460	MtrunA17_Chr7g0254251	95.849	265	5	2	1	259	1	265	0.0	520
Msa1032460	MtrunA17_Chr6g0460691	46.809	282	96	7	20	259	24	293	2.19e-59	190
Msa1032460	MtrunA17_Chr7g0223471	66.197	71	24	0	18	88	37	107	3.54e-28	111
Msa1032460	MtrunA17_Chr2g0283141	61.538	78	29	1	11	87	37	114	1.44e-26	107
Msa1032460	MtrunA17_Chr2g0283141	43.077	65	37	0	195	259	341	405	6.57e-14	70.9
Msa1032460	MtrunA17_Chr4g0043891	39.024	82	46	1	27	104	7	88	1.64e-15	73.9
Msa1032460	MtrunA17_Chr8g0392991	44.595	74	38	1	25	95	93	166	4.68e-14	70.9
Msa1032460	MtrunA17_Chr4g0031341	43.077	65	37	0	28	92	25	89	1.18e-13	68.9
Msa1032460	MtrunA17_Chr1g0212511	47.692	65	33	1	26	90	83	146	3.53e-13	67.8
Msa1032460	MtrunA17_Chr3g0144021	44.444	63	35	0	26	88	80	142	3.29e-12	64.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1032460	AT3G03660.1	47.778	270	105	8	12	259	8	263	4.01e-60	191
Msa1032460	AT3G03660.4	47.778	270	105	8	12	259	8	263	2.49e-59	190
Msa1032460	AT3G03660.2	45.151	299	99	9	12	259	8	292	1.81e-57	185
Msa1032460	AT3G03660.3	45.151	299	99	9	12	259	8	292	1.26e-56	184
Msa1032460	AT5G17810.3	44.528	265	109	8	19	259	12	262	2.57e-52	171
Msa1032460	AT5G17810.1	44.697	264	111	8	19	259	12	263	3.71e-51	168
Msa1032460	AT5G17810.2	44.697	264	111	8	19	259	12	263	3.71e-51	168
Msa1032460	AT2G33880.1	63.235	68	25	0	20	87	47	114	3.03e-25	103
Msa1032460	AT2G33880.1	45.455	55	30	0	205	259	323	377	6.27e-12	65.1
Msa1032460	AT2G33880.2	63.235	68	25	0	20	87	47	114	3.76e-25	102

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Find 65 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGAACCGGTTAGGTCA+AGG	0.615654	7_1:+67377401	Msa1032460:CDS
AACAACACTCCAACCCAACA+TGG	0.616195	7_1:+67377370	Msa1032460:CDS
AACACCACCACATGATGAAG+AGG	0.558375	7_1:-67377776	None:intergenic
AAGATGCCATGTTCATTTGT+AGG	0.357603	7_1:-67380411	None:intergenic
AAGTGCAATTCCTTGTGATA+TGG	0.444028	7_1:+67377687	Msa1032460:CDS
ACATGGTGAAAGCTACTTTC+TGG	0.379822	7_1:+67380449	Msa1032460:CDS
AGAAAACTTCTTGAGAAATT+CGG	0.326558	7_1:+67377514	Msa1032460:CDS
AGAAGAATCATTTAAACAAG+AGG	0.579493	7_1:-67377746	None:intergenic
AGAATCATTTAAACAAGAGG+AGG	0.602089	7_1:-67377743	None:intergenic
AGAGGAGGGCACAAAAGTGA+TGG	0.605244	7_1:-67377883	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAATCATTTAAACAAGAGG+AGG	-	chr7_1:67377746-67377765	None:intergenic	30.0%
TAGTTGAAATTAGGAGAAAG+AGG	-	chr7_1:67377904-67377923	None:intergenic	30.0%
CGTTTCATACCTTAAAACAA+AGG	+	chr7_1:67378462-67378481	Msa1032460:intron	30.0%
GTAACTAATTAGGTGAACTA+AGG	+	chr7_1:67378861-67378880	Msa1032460:intron	30.0%
AAAGTGAGAGAATAAAAGGA+AGG	-	chr7_1:67379439-67379458	None:intergenic	30.0%
AAATCATCTCATCTGATTGT+TGG	+	chr7_1:67379541-67379560	Msa1032460:intron	30.0%
TGGTGAATAATTTCCAAAGA+GGG	-	chr7_1:67379569-67379588	None:intergenic	30.0%
ATGGTGAATAATTTCCAAAG+AGG	-	chr7_1:67379570-67379589	None:intergenic	30.0%
TGGTAAAAACTAGTGATGTA+TGG	-	chr7_1:67379589-67379608	None:intergenic	30.0%
AGTTAAAAAAAATGTCGTCG+CGG	-	chr7_1:67379814-67379833	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	67377340	67380470	67377340	ID=Msa1032460;Name=Msa1032460
chr7_1	mRNA	67377340	67380470	67377340	ID=Msa1032460-mRNA-1;Parent=Msa1032460;Name=Msa1032460-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|1\|0.33\|0.25\|4\|0\|259
chr7_1	exon	67377340	67377581	67377340	ID=Msa1032460-mRNA-1:exon:15423;Parent=Msa1032460-mRNA-1
chr7_1	exon	67377588	67377823	67377588	ID=Msa1032460-mRNA-1:exon:15424;Parent=Msa1032460-mRNA-1
chr7_1	exon	67377836	67377931	67377836	ID=Msa1032460-mRNA-1:exon:15425;Parent=Msa1032460-mRNA-1
chr7_1	exon	67380268	67380470	67380268	ID=Msa1032460-mRNA-1:exon:15426;Parent=Msa1032460-mRNA-1
chr7_1	CDS	67377340	67377581	67377340	ID=Msa1032460-mRNA-1:cds;Parent=Msa1032460-mRNA-1
chr7_1	CDS	67377588	67377823	67377588	ID=Msa1032460-mRNA-1:cds;Parent=Msa1032460-mRNA-1
chr7_1	CDS	67377836	67377931	67377836	ID=Msa1032460-mRNA-1:cds;Parent=Msa1032460-mRNA-1
chr7_1	CDS	67380268	67380470	67380268	ID=Msa1032460-mRNA-1:cds;Parent=Msa1032460-mRNA-1

Gene Sequence

>Msa1032460

ATGGAAGATAAGATGCAACATGACCCCCCCAACAACACTCCAACCCAACATGGTTCCGAGAAAACTGAACCGGTTAGGTCAAGGTGGACACCAAAACCAGAACAAATTCTCATACTTGAGTCCATCTTCAACAGTGGCATGGTGAATCCCCCAAAAGAAGAAACTATCAAAATAAGAAAACTTCTTGAGAAATTCGGCAACGTCGGTGATGCTAACGTCTTCTACTGGTTCCAAAACCGCCGATCTCGCCGCCGACAACGCCAGATGCAGCAGGCCACACTTGATCAGCAAAGAAATCAGATGGCTATGATGCAGCCTCAGCAAGTTGTTAACGATGGTGCAAGTGCAATTCCTTGTGATATGGTTCAAACCAACCCAACCATGGTTTTTGGTGGTTCCTCCTCTTGTTTAAATGATTCTTCTGGTTCTTCCTCTTCATCATGTGGTGGTGTTCTTAGTGGTCAACAAGGCATGGATGTTTCTTCTCAAATGGGTTTTCTTGGAGTTGATCAAACTTTAGCTGCACCATCACTTTTGTGCCCTCCTCTTTCTCCTAATTTCAACTATCACTCTGGATATGGAGGTGCTAGTAATATAACAGGATTGGCAACAGTGTTTATCAATGGGATTGCAACAGAAATTCAAGCAGGGCCACTAGACATCAAAACAGTGTTTGGAGAAGATGTGATGTTAGTTCATTCCTCTGGTGTGCCAGTTCCTACAAATGAACATGGCATCTTGATTCAGAGCTTGCAACATGGTGAAAGCTACTTTCTG

Protein sequence

>Msa1032460

MEDKMQHDPPNNTPTQHGSEKTEPVRSRWTPKPEQILILESIFNSGMVNPPKEETIKIRKLLEKFGNVGDANVFYWFQNRRSRRRQRQMQQATLDQQRNQMAMMQPQQVVNDGASAIPCDMVQTNPTMVFGGSSSCLNDSSGSSSSSCGGVLSGQQGMDVSSQMGFLGVDQTLAAPSLLCPPLSPNFNYHSGYGGASNITGLATVFINGIATEIQAGPLDIKTVFGEDVMLVHSSGVPVPTNEHGILIQSLQHGESYFL