Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1033190 | XP_039683934.1 | 91.353 | 266 | 18 | 3 | 1 | 264 | 1 | 263 | 3.36e-161 | 459 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1033190 | A0A396H587 | 91.373 | 255 | 17 | 3 | 12 | 264 | 1 | 252 | 4.19e-153 | 438 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1033190 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1033190 | MtrunA17_Chr7g0255491 | 91.373 | 255 | 17 | 3 | 12 | 264 | 1 | 252 | 8.07e-157 | 438 |
| Msa1033190 | MtrunA17_Chr3g0081141 | 28.767 | 219 | 136 | 7 | 78 | 287 | 98 | 305 | 7.59e-15 | 73.2 |
| Msa1033190 | MtrunA17_Chr2g0310101 | 40.816 | 98 | 51 | 4 | 78 | 168 | 59 | 156 | 2.68e-14 | 70.5 |
| Msa1033190 | MtrunA17_Chr7g0239711 | 41.111 | 90 | 46 | 3 | 76 | 158 | 55 | 144 | 1.02e-12 | 65.9 |
| Msa1033190 | MtrunA17_Chr3g0079671 | 27.074 | 229 | 127 | 7 | 78 | 287 | 98 | 305 | 3.93e-12 | 65.5 |
| Msa1033190 | MtrunA17_Chr7g0224221 | 44.286 | 70 | 29 | 2 | 78 | 137 | 148 | 217 | 6.02e-12 | 65.5 |
| Msa1033190 | MtrunA17_Chr5g0396031 | 40.449 | 89 | 35 | 3 | 77 | 157 | 45 | 123 | 6.38e-12 | 65.5 |
| Msa1033190 | MtrunA17_Chr3g0081131 | 27.660 | 235 | 109 | 8 | 78 | 287 | 98 | 296 | 6.74e-12 | 64.7 |
| Msa1033190 | MtrunA17_Chr1g0161901 | 41.509 | 106 | 46 | 6 | 11 | 110 | 34 | 129 | 2.22e-11 | 62.8 |
| Msa1033190 | MtrunA17_Chr1g0149811 | 37.190 | 121 | 70 | 3 | 62 | 182 | 79 | 193 | 7.59e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1033190 | AT5G25160.1 | 40.000 | 105 | 45 | 3 | 78 | 182 | 59 | 145 | 3.88e-11 | 62.4 |
Find 100 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTGGGATGAATAATTTA+TGG | 0.162779 | 7_1:+68211516 | Msa1033190:CDS |
| TCCCTTGCAACACCACAATT+TGG | 0.181385 | 7_1:+68211500 | Msa1033190:CDS |
| TGAACAATTCCTTGCCTTCT+TGG | 0.192209 | 7_1:+68211387 | Msa1033190:CDS |
| TGGCTTGGTGGTTCATCTTC+TGG | 0.227050 | 7_1:+68211407 | Msa1033190:CDS |
| CGTGATGCAGGAGGTGTATT+TGG | 0.246247 | 7_1:-68211452 | None:intergenic |
| TCAGAAGATGCCTCAGAAAT+TGG | 0.273890 | 7_1:-68211626 | None:intergenic |
| CCCACAGTGTTTGATCTTTG+TGG | 0.295932 | 7_1:-68211569 | None:intergenic |
| CTGTCATCTTCATCTTCAAT+AGG | 0.321326 | 7_1:-68211692 | None:intergenic |
| TTGGAGAATGGTGAGCATTC+AGG | 0.322095 | 7_1:+68211065 | Msa1033190:CDS |
| CAAGTTCAGTTCCTCCTCAT+TGG | 0.324355 | 7_1:-68211729 | None:intergenic |
| AATTCCTTGCCTTCTTGGCT+TGG | 0.353374 | 7_1:+68211392 | Msa1033190:CDS |
| CCCTTGCAACACCACAATTT+GGG | 0.353563 | 7_1:+68211501 | Msa1033190:CDS |
| GAGGTTGGTGGTGATGTCTT+TGG | 0.357363 | 7_1:-68210975 | None:intergenic |
| ATTTGGGATGAATAATTTAT+GGG | 0.357825 | 7_1:+68211517 | Msa1033190:CDS |
| AAGTTCAGTTCCTCCTCATT+GGG | 0.363891 | 7_1:-68211728 | None:intergenic |
| TCCTTGCCTTCTTGGCTTGG+TGG | 0.368207 | 7_1:+68211395 | Msa1033190:CDS |
| CTCACCATTCTCCAAGGGTT+TGG | 0.371444 | 7_1:-68211057 | None:intergenic |
| AAGATCAAACACTGTGGGTT+TGG | 0.398899 | 7_1:+68211574 | Msa1033190:CDS |
| GGTTCATCTTCTGGTGGCTA+TGG | 0.403832 | 7_1:+68211416 | Msa1033190:CDS |
| GGATATTTGATCGATACCTT+AGG | 0.410338 | 7_1:-68211271 | None:intergenic |
| TGTTCACATGGGAACCAATT+GGG | 0.426738 | 7_1:-68211370 | None:intergenic |
| TTCCCCACTTCTCAAGCGCT+TGG | 0.427846 | 7_1:+68211167 | Msa1033190:CDS |
| GCGCAAAATGATGGAGGATT+CGG | 0.431644 | 7_1:+68210926 | Msa1033190:CDS |
| TTGTTCACATGGGAACCAAT+TGG | 0.439864 | 7_1:-68211371 | None:intergenic |
| AATTCCTTCACTTGCGGCAC+AGG | 0.441324 | 7_1:-68211119 | None:intergenic |
| CAATGAGGAGGAACTGAACT+TGG | 0.445260 | 7_1:+68211730 | Msa1033190:CDS |
| TTCACTTGCGGCACAGGTGG+AGG | 0.445355 | 7_1:-68211113 | None:intergenic |
| GGAGAGCTTGAAAATTGATA+AGG | 0.446609 | 7_1:-68211302 | None:intergenic |
| GATTTCTTGACCTTGAGGCT+TGG | 0.452474 | 7_1:+68211014 | Msa1033190:CDS |
| GCTCACGCTTATGAGCGTTT+TGG | 0.454295 | 7_1:-68211196 | None:intergenic |
| TTCTTGACCTTGAGGCTTGG+CGG | 0.462476 | 7_1:+68211017 | Msa1033190:CDS |
| CCCACTTCTCAAGCGCTTGG+AGG | 0.464114 | 7_1:+68211170 | Msa1033190:CDS |
| TCATCTTCTGGTGGCTATGG+AGG | 0.469395 | 7_1:+68211419 | Msa1033190:CDS |
| GCTAGCCTGGCCAACCCAAT+TGG | 0.470467 | 7_1:+68211356 | Msa1033190:CDS |
| CCAACCTCTGGATCGGATGC+TGG | 0.471452 | 7_1:+68210990 | Msa1033190:CDS |
| ATTCTCCAAGGGTTTGGAAG+TGG | 0.473353 | 7_1:-68211051 | None:intergenic |
| GAGAGCTTGAAAATTGATAA+GGG | 0.474183 | 7_1:-68211301 | None:intergenic |
| GGGAACCAATTGGGTTGGCC+AGG | 0.476365 | 7_1:-68211361 | None:intergenic |
| ATATTTCCGTAGTGCTAGCC+TGG | 0.476473 | 7_1:+68211343 | Msa1033190:CDS |
| AAACCTCAAGCGCAAAATGA+TGG | 0.477017 | 7_1:+68210917 | Msa1033190:CDS |
| GATATTTGATCGATACCTTA+GGG | 0.478593 | 7_1:-68211270 | None:intergenic |
| CTTGAAAATTGATAAGGGTA+TGG | 0.487010 | 7_1:-68211296 | None:intergenic |
| TTCGGAGCAAGAGTCGAAAT+CGG | 0.492293 | 7_1:+68210944 | Msa1033190:CDS |
| AATTTCTGAGGCATCTTCTG+AGG | 0.495312 | 7_1:+68211628 | Msa1033190:CDS |
| TCCTTCACTTGCGGCACAGG+TGG | 0.495412 | 7_1:-68211116 | None:intergenic |
| GTGTTTGATCTTTGTGGAGT+TGG | 0.498368 | 7_1:-68211563 | None:intergenic |
| GGCATCACAAATCGTGATGC+AGG | 0.498721 | 7_1:-68211464 | None:intergenic |
| AAGACATCACCACCAACCTC+TGG | 0.499816 | 7_1:+68210978 | Msa1033190:CDS |
| TCCCAAATTGTGGTGTTGCA+AGG | 0.499889 | 7_1:-68211502 | None:intergenic |
| TTCTCCAAGGGTTTGGAAGT+GGG | 0.501108 | 7_1:-68211050 | None:intergenic |
| CATCTTCTGGTGGCTATGGA+GGG | 0.505349 | 7_1:+68211420 | Msa1033190:CDS |
| ACTTCCAAACCCTTGGAGAA+TGG | 0.510882 | 7_1:+68211053 | Msa1033190:CDS |
| TCCTCCAAGCGCTTGAGAAG+TGG | 0.512717 | 7_1:-68211171 | None:intergenic |
| GATGAACCACCAAGCCAAGA+AGG | 0.518609 | 7_1:-68211401 | None:intergenic |
| GCAAGAGTCGAAATCGGAGA+AGG | 0.519914 | 7_1:+68210950 | Msa1033190:CDS |
| AAATCCCACTTCCAAACCCT+TGG | 0.521354 | 7_1:+68211046 | Msa1033190:CDS |
| AAAATTGATAAGGGTATGGA+AGG | 0.527390 | 7_1:-68211292 | None:intergenic |
| GAAGATGCCTCAGAAATTGG+AGG | 0.529710 | 7_1:-68211623 | None:intergenic |
| CTGGCGATTTCTTGACCTTG+AGG | 0.533323 | 7_1:+68211009 | Msa1033190:CDS |
| CACATGGGAACCAATTGGGT+TGG | 0.534413 | 7_1:-68211366 | None:intergenic |
| TTGACCTTGAGGCTTGGCGG+TGG | 0.537816 | 7_1:+68211020 | Msa1033190:CDS |
| CCTCCAAGCGCTTGAGAAGT+GGG | 0.545861 | 7_1:-68211170 | None:intergenic |
| TACGGAAATATGAATACCCT+TGG | 0.547864 | 7_1:-68211331 | None:intergenic |
| ATGAATAATTTATGGGGTGG+AGG | 0.548808 | 7_1:+68211524 | Msa1033190:CDS |
| GGGATGAATAATTTATGGGG+TGG | 0.553703 | 7_1:+68211521 | Msa1033190:CDS |
| CTTGGTGGTTCATCTTCTGG+TGG | 0.555595 | 7_1:+68211410 | Msa1033190:CDS |
| AATGGAAGAACAAAGGAGAG+AGG | 0.557192 | 7_1:+68211232 | Msa1033190:CDS |
| TATGAATACCCTTGGTAGTG+TGG | 0.561783 | 7_1:-68211323 | None:intergenic |
| CCCAAATTGTGGTGTTGCAA+GGG | 0.562024 | 7_1:-68211501 | None:intergenic |
| TCCACCTGTGCCGCAAGTGA+AGG | 0.562222 | 7_1:+68211115 | Msa1033190:CDS |
| AAATTATTCATCCCAAATTG+TGG | 0.569543 | 7_1:-68211512 | None:intergenic |
| TGAATGCTCACCATTCTCCA+AGG | 0.576662 | 7_1:-68211063 | None:intergenic |
| ACCACCAAGCCAAGAAGGCA+AGG | 0.577515 | 7_1:-68211396 | None:intergenic |
| ATGTGATCGATTCAGCCCTA+AGG | 0.581100 | 7_1:+68211255 | Msa1033190:CDS |
| CAAGCTCTCCACACTACCAA+GGG | 0.581296 | 7_1:+68211315 | Msa1033190:CDS |
| GCAAGGGATGAATTTGACAT+TGG | 0.586827 | 7_1:-68211485 | None:intergenic |
| ATCACCACCAACCTCTGGAT+CGG | 0.589780 | 7_1:+68210983 | Msa1033190:CDS |
| GAATGCTCACCATTCTCCAA+GGG | 0.590384 | 7_1:-68211062 | None:intergenic |
| CCAGCATCCGATCCAGAGGT+TGG | 0.592460 | 7_1:-68210990 | None:intergenic |
| CAAGAGAATTCCTTCACTTG+CGG | 0.593057 | 7_1:-68211125 | None:intergenic |
| TCAAGCTCTCCACACTACCA+AGG | 0.596295 | 7_1:+68211314 | Msa1033190:CDS |
| TTTGGGATGAATAATTTATG+GGG | 0.599177 | 7_1:+68211518 | Msa1033190:CDS |
| TGTGCCACCGCCAAGCCTCA+AGG | 0.601323 | 7_1:-68211024 | None:intergenic |
| AAGATGCCTCAGAAATTGGA+GGG | 0.602431 | 7_1:-68211622 | None:intergenic |
| GCATCCGATCCAGAGGTTGG+TGG | 0.602933 | 7_1:-68210987 | None:intergenic |
| GGTTGGCCAGGCTAGCACTA+CGG | 0.608827 | 7_1:-68211349 | None:intergenic |
| AAGGCAAGGAATTGTTCACA+TGG | 0.612872 | 7_1:-68211382 | None:intergenic |
| AGATGAAGATGACAGAAATG+AGG | 0.616572 | 7_1:+68211700 | Msa1033190:CDS |
| ATCGCCAGCATCCGATCCAG+AGG | 0.630563 | 7_1:-68210994 | None:intergenic |
| CCACAAAGATCAAACACTGT+GGG | 0.631128 | 7_1:+68211569 | Msa1033190:CDS |
| CTCCAAGCGCTTGAGAAGTG+GGG | 0.636012 | 7_1:-68211169 | None:intergenic |
| TCAAACCCCTCCAATTTCTG+AGG | 0.642241 | 7_1:+68211616 | Msa1033190:CDS |
| AGATGCCTCAGAAATTGGAG+GGG | 0.652285 | 7_1:-68211621 | None:intergenic |
| TGAGGCTAATCCCAATGAGG+AGG | 0.655080 | 7_1:+68211718 | Msa1033190:CDS |
| CCTCAAGCGCAAAATGATGG+AGG | 0.656497 | 7_1:+68210920 | Msa1033190:CDS |
| ATCACAAATCGTGATGCAGG+AGG | 0.664503 | 7_1:-68211461 | None:intergenic |
| TCTTCAATAGGATCATGAGA+AGG | 0.673021 | 7_1:-68211680 | None:intergenic |
| AAATGAGGCTAATCCCAATG+AGG | 0.702908 | 7_1:+68211715 | Msa1033190:CDS |
| AGGCAAGGAATTGTTCACAT+GGG | 0.705162 | 7_1:-68211381 | None:intergenic |
| TCCACAAAGATCAAACACTG+TGG | 0.713784 | 7_1:+68211568 | Msa1033190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGGGATGAATAATTTA+TGG | + | chr7_1:68211516-68211535 | Msa1033190:CDS | 20.0% |
| !!! | ATTTGGGATGAATAATTTAT+GGG | + | chr7_1:68211517-68211536 | Msa1033190:CDS | 20.0% |
| !!! | AATTTGGGATGAATAATTTA+TGG | + | chr7_1:68211516-68211535 | Msa1033190:CDS | 20.0% |
| !!! | ATTTGGGATGAATAATTTAT+GGG | + | chr7_1:68211517-68211536 | Msa1033190:CDS | 20.0% |
| ! | TCAAAAAAATGGAAGAACAA+AGG | + | chr7_1:68211225-68211244 | Msa1033190:CDS | 25.0% |
| ! | AAATTATTCATCCCAAATTG+TGG | - | chr7_1:68211515-68211534 | None:intergenic | 25.0% |
| !! | TTTGGGATGAATAATTTATG+GGG | + | chr7_1:68211518-68211537 | Msa1033190:CDS | 25.0% |
| ! | TCAAAAAAATGGAAGAACAA+AGG | + | chr7_1:68211225-68211244 | Msa1033190:CDS | 25.0% |
| ! | AAATTATTCATCCCAAATTG+TGG | - | chr7_1:68211515-68211534 | None:intergenic | 25.0% |
| !! | TTTGGGATGAATAATTTATG+GGG | + | chr7_1:68211518-68211537 | Msa1033190:CDS | 25.0% |
| GATATTTGATCGATACCTTA+GGG | - | chr7_1:68211273-68211292 | None:intergenic | 30.0% | |
| ! | AAAATTGATAAGGGTATGGA+AGG | - | chr7_1:68211295-68211314 | None:intergenic | 30.0% |
| CTTGAAAATTGATAAGGGTA+TGG | - | chr7_1:68211299-68211318 | None:intergenic | 30.0% | |
| GAGAGCTTGAAAATTGATAA+GGG | - | chr7_1:68211304-68211323 | None:intergenic | 30.0% | |
| GATATTTGATCGATACCTTA+GGG | - | chr7_1:68211273-68211292 | None:intergenic | 30.0% | |
| ! | AAAATTGATAAGGGTATGGA+AGG | - | chr7_1:68211295-68211314 | None:intergenic | 30.0% |
| CTTGAAAATTGATAAGGGTA+TGG | - | chr7_1:68211299-68211318 | None:intergenic | 30.0% | |
| GAGAGCTTGAAAATTGATAA+GGG | - | chr7_1:68211304-68211323 | None:intergenic | 30.0% | |
| TGAGCGTGTCTTCAAAAAAA+TGG | + | chr7_1:68211214-68211233 | Msa1033190:CDS | 35.0% | |
| GGATATTTGATCGATACCTT+AGG | - | chr7_1:68211274-68211293 | None:intergenic | 35.0% | |
| GGAGAGCTTGAAAATTGATA+AGG | - | chr7_1:68211305-68211324 | None:intergenic | 35.0% | |
| TACGGAAATATGAATACCCT+TGG | - | chr7_1:68211334-68211353 | None:intergenic | 35.0% | |
| ATGAATAATTTATGGGGTGG+AGG | + | chr7_1:68211524-68211543 | Msa1033190:CDS | 35.0% | |
| TCTTCAATAGGATCATGAGA+AGG | - | chr7_1:68211683-68211702 | None:intergenic | 35.0% | |
| CTGTCATCTTCATCTTCAAT+AGG | - | chr7_1:68211695-68211714 | None:intergenic | 35.0% | |
| AGATGAAGATGACAGAAATG+AGG | + | chr7_1:68211700-68211719 | Msa1033190:CDS | 35.0% | |
| TGAGCGTGTCTTCAAAAAAA+TGG | + | chr7_1:68211214-68211233 | Msa1033190:CDS | 35.0% | |
| GGATATTTGATCGATACCTT+AGG | - | chr7_1:68211274-68211293 | None:intergenic | 35.0% | |
| GGAGAGCTTGAAAATTGATA+AGG | - | chr7_1:68211305-68211324 | None:intergenic | 35.0% | |
| TACGGAAATATGAATACCCT+TGG | - | chr7_1:68211334-68211353 | None:intergenic | 35.0% | |
| ATGAATAATTTATGGGGTGG+AGG | + | chr7_1:68211524-68211543 | Msa1033190:CDS | 35.0% | |
| TCTTCAATAGGATCATGAGA+AGG | - | chr7_1:68211683-68211702 | None:intergenic | 35.0% | |
| CTGTCATCTTCATCTTCAAT+AGG | - | chr7_1:68211695-68211714 | None:intergenic | 35.0% | |
| AGATGAAGATGACAGAAATG+AGG | + | chr7_1:68211700-68211719 | Msa1033190:CDS | 35.0% | |
| AAACCTCAAGCGCAAAATGA+TGG | + | chr7_1:68210917-68210936 | Msa1033190:CDS | 40.0% | |
| CAAGAGAATTCCTTCACTTG+CGG | - | chr7_1:68211128-68211147 | None:intergenic | 40.0% | |
| AATGGAAGAACAAAGGAGAG+AGG | + | chr7_1:68211232-68211251 | Msa1033190:CDS | 40.0% | |
| !! | TATGAATACCCTTGGTAGTG+TGG | - | chr7_1:68211326-68211345 | None:intergenic | 40.0% |
| TGTTCACATGGGAACCAATT+GGG | - | chr7_1:68211373-68211392 | None:intergenic | 40.0% | |
| TTGTTCACATGGGAACCAAT+TGG | - | chr7_1:68211374-68211393 | None:intergenic | 40.0% | |
| AGGCAAGGAATTGTTCACAT+GGG | - | chr7_1:68211384-68211403 | None:intergenic | 40.0% | |
| AAGGCAAGGAATTGTTCACA+TGG | - | chr7_1:68211385-68211404 | None:intergenic | 40.0% | |
| TGAACAATTCCTTGCCTTCT+TGG | + | chr7_1:68211387-68211406 | Msa1033190:CDS | 40.0% | |
| GCAAGGGATGAATTTGACAT+TGG | - | chr7_1:68211488-68211507 | None:intergenic | 40.0% | |
| GGGATGAATAATTTATGGGG+TGG | + | chr7_1:68211521-68211540 | Msa1033190:CDS | 40.0% | |
| GTGTTTGATCTTTGTGGAGT+TGG | - | chr7_1:68211566-68211585 | None:intergenic | 40.0% | |
| TCCACAAAGATCAAACACTG+TGG | + | chr7_1:68211568-68211587 | Msa1033190:CDS | 40.0% | |
| CCACAAAGATCAAACACTGT+GGG | + | chr7_1:68211569-68211588 | Msa1033190:CDS | 40.0% | |
| AAGATCAAACACTGTGGGTT+TGG | + | chr7_1:68211574-68211593 | Msa1033190:CDS | 40.0% | |
| AAGATGCCTCAGAAATTGGA+GGG | - | chr7_1:68211625-68211644 | None:intergenic | 40.0% | |
| TCAGAAGATGCCTCAGAAAT+TGG | - | chr7_1:68211629-68211648 | None:intergenic | 40.0% | |
| !! | AATTTCTGAGGCATCTTCTG+AGG | + | chr7_1:68211628-68211647 | Msa1033190:CDS | 40.0% |
| AAATGAGGCTAATCCCAATG+AGG | + | chr7_1:68211715-68211734 | Msa1033190:CDS | 40.0% | |
| AAGTTCAGTTCCTCCTCATT+GGG | - | chr7_1:68211731-68211750 | None:intergenic | 40.0% | |
| AAACCTCAAGCGCAAAATGA+TGG | + | chr7_1:68210917-68210936 | Msa1033190:CDS | 40.0% | |
| CAAGAGAATTCCTTCACTTG+CGG | - | chr7_1:68211128-68211147 | None:intergenic | 40.0% | |
| AATGGAAGAACAAAGGAGAG+AGG | + | chr7_1:68211232-68211251 | Msa1033190:CDS | 40.0% | |
| !! | TATGAATACCCTTGGTAGTG+TGG | - | chr7_1:68211326-68211345 | None:intergenic | 40.0% |
| TGTTCACATGGGAACCAATT+GGG | - | chr7_1:68211373-68211392 | None:intergenic | 40.0% | |
| TTGTTCACATGGGAACCAAT+TGG | - | chr7_1:68211374-68211393 | None:intergenic | 40.0% | |
| AGGCAAGGAATTGTTCACAT+GGG | - | chr7_1:68211384-68211403 | None:intergenic | 40.0% | |
| AAGGCAAGGAATTGTTCACA+TGG | - | chr7_1:68211385-68211404 | None:intergenic | 40.0% | |
| TGAACAATTCCTTGCCTTCT+TGG | + | chr7_1:68211387-68211406 | Msa1033190:CDS | 40.0% | |
| GCAAGGGATGAATTTGACAT+TGG | - | chr7_1:68211488-68211507 | None:intergenic | 40.0% | |
| GGGATGAATAATTTATGGGG+TGG | + | chr7_1:68211521-68211540 | Msa1033190:CDS | 40.0% | |
| GTGTTTGATCTTTGTGGAGT+TGG | - | chr7_1:68211566-68211585 | None:intergenic | 40.0% | |
| TCCACAAAGATCAAACACTG+TGG | + | chr7_1:68211568-68211587 | Msa1033190:CDS | 40.0% | |
| CCACAAAGATCAAACACTGT+GGG | + | chr7_1:68211569-68211588 | Msa1033190:CDS | 40.0% | |
| AAGATCAAACACTGTGGGTT+TGG | + | chr7_1:68211574-68211593 | Msa1033190:CDS | 40.0% | |
| AAGATGCCTCAGAAATTGGA+GGG | - | chr7_1:68211625-68211644 | None:intergenic | 40.0% | |
| TCAGAAGATGCCTCAGAAAT+TGG | - | chr7_1:68211629-68211648 | None:intergenic | 40.0% | |
| !! | AATTTCTGAGGCATCTTCTG+AGG | + | chr7_1:68211628-68211647 | Msa1033190:CDS | 40.0% |
| AAATGAGGCTAATCCCAATG+AGG | + | chr7_1:68211715-68211734 | Msa1033190:CDS | 40.0% | |
| AAGTTCAGTTCCTCCTCATT+GGG | - | chr7_1:68211731-68211750 | None:intergenic | 40.0% | |
| ! | GCGCAAAATGATGGAGGATT+CGG | + | chr7_1:68210926-68210945 | Msa1033190:CDS | 45.0% |
| TTCGGAGCAAGAGTCGAAAT+CGG | + | chr7_1:68210944-68210963 | Msa1033190:CDS | 45.0% | |
| GATTTCTTGACCTTGAGGCT+TGG | + | chr7_1:68211014-68211033 | Msa1033190:CDS | 45.0% | |
| AAATCCCACTTCCAAACCCT+TGG | + | chr7_1:68211046-68211065 | Msa1033190:CDS | 45.0% | |
| TTCTCCAAGGGTTTGGAAGT+GGG | - | chr7_1:68211053-68211072 | None:intergenic | 45.0% | |
| ATTCTCCAAGGGTTTGGAAG+TGG | - | chr7_1:68211054-68211073 | None:intergenic | 45.0% | |
| ACTTCCAAACCCTTGGAGAA+TGG | + | chr7_1:68211053-68211072 | Msa1033190:CDS | 45.0% | |
| GAATGCTCACCATTCTCCAA+GGG | - | chr7_1:68211065-68211084 | None:intergenic | 45.0% | |
| TGAATGCTCACCATTCTCCA+AGG | - | chr7_1:68211066-68211085 | None:intergenic | 45.0% | |
| TTGGAGAATGGTGAGCATTC+AGG | + | chr7_1:68211065-68211084 | Msa1033190:CDS | 45.0% | |
| ! | ATGTGATCGATTCAGCCCTA+AGG | + | chr7_1:68211255-68211274 | Msa1033190:CDS | 45.0% |
| ATATTTCCGTAGTGCTAGCC+TGG | + | chr7_1:68211343-68211362 | Msa1033190:CDS | 45.0% | |
| AATTCCTTGCCTTCTTGGCT+TGG | + | chr7_1:68211392-68211411 | Msa1033190:CDS | 45.0% | |
| ATCACAAATCGTGATGCAGG+AGG | - | chr7_1:68211464-68211483 | None:intergenic | 45.0% | |
| TCCCTTGCAACACCACAATT+TGG | + | chr7_1:68211500-68211519 | Msa1033190:CDS | 45.0% | |
| !! | CCCAAATTGTGGTGTTGCAA+GGG | - | chr7_1:68211504-68211523 | None:intergenic | 45.0% |
| CCCTTGCAACACCACAATTT+GGG | + | chr7_1:68211501-68211520 | Msa1033190:CDS | 45.0% | |
| !! | TCCCAAATTGTGGTGTTGCA+AGG | - | chr7_1:68211505-68211524 | None:intergenic | 45.0% |
| CCCACAGTGTTTGATCTTTG+TGG | - | chr7_1:68211572-68211591 | None:intergenic | 45.0% | |
| TCAAACCCCTCCAATTTCTG+AGG | + | chr7_1:68211616-68211635 | Msa1033190:CDS | 45.0% | |
| AGATGCCTCAGAAATTGGAG+GGG | - | chr7_1:68211624-68211643 | None:intergenic | 45.0% | |
| GAAGATGCCTCAGAAATTGG+AGG | - | chr7_1:68211626-68211645 | None:intergenic | 45.0% | |
| CAAGTTCAGTTCCTCCTCAT+TGG | - | chr7_1:68211732-68211751 | None:intergenic | 45.0% | |
| CAATGAGGAGGAACTGAACT+TGG | + | chr7_1:68211730-68211749 | Msa1033190:CDS | 45.0% | |
| ! | GCGCAAAATGATGGAGGATT+CGG | + | chr7_1:68210926-68210945 | Msa1033190:CDS | 45.0% |
| TTCGGAGCAAGAGTCGAAAT+CGG | + | chr7_1:68210944-68210963 | Msa1033190:CDS | 45.0% | |
| GATTTCTTGACCTTGAGGCT+TGG | + | chr7_1:68211014-68211033 | Msa1033190:CDS | 45.0% | |
| AAATCCCACTTCCAAACCCT+TGG | + | chr7_1:68211046-68211065 | Msa1033190:CDS | 45.0% | |
| TTCTCCAAGGGTTTGGAAGT+GGG | - | chr7_1:68211053-68211072 | None:intergenic | 45.0% | |
| ATTCTCCAAGGGTTTGGAAG+TGG | - | chr7_1:68211054-68211073 | None:intergenic | 45.0% | |
| ACTTCCAAACCCTTGGAGAA+TGG | + | chr7_1:68211053-68211072 | Msa1033190:CDS | 45.0% | |
| GAATGCTCACCATTCTCCAA+GGG | - | chr7_1:68211065-68211084 | None:intergenic | 45.0% | |
| TGAATGCTCACCATTCTCCA+AGG | - | chr7_1:68211066-68211085 | None:intergenic | 45.0% | |
| TTGGAGAATGGTGAGCATTC+AGG | + | chr7_1:68211065-68211084 | Msa1033190:CDS | 45.0% | |
| ! | ATGTGATCGATTCAGCCCTA+AGG | + | chr7_1:68211255-68211274 | Msa1033190:CDS | 45.0% |
| ATATTTCCGTAGTGCTAGCC+TGG | + | chr7_1:68211343-68211362 | Msa1033190:CDS | 45.0% | |
| AATTCCTTGCCTTCTTGGCT+TGG | + | chr7_1:68211392-68211411 | Msa1033190:CDS | 45.0% | |
| ATCACAAATCGTGATGCAGG+AGG | - | chr7_1:68211464-68211483 | None:intergenic | 45.0% | |
| TCCCTTGCAACACCACAATT+TGG | + | chr7_1:68211500-68211519 | Msa1033190:CDS | 45.0% | |
| !! | CCCAAATTGTGGTGTTGCAA+GGG | - | chr7_1:68211504-68211523 | None:intergenic | 45.0% |
| CCCTTGCAACACCACAATTT+GGG | + | chr7_1:68211501-68211520 | Msa1033190:CDS | 45.0% | |
| !! | TCCCAAATTGTGGTGTTGCA+AGG | - | chr7_1:68211505-68211524 | None:intergenic | 45.0% |
| CCCACAGTGTTTGATCTTTG+TGG | - | chr7_1:68211572-68211591 | None:intergenic | 45.0% | |
| TCAAACCCCTCCAATTTCTG+AGG | + | chr7_1:68211616-68211635 | Msa1033190:CDS | 45.0% | |
| AGATGCCTCAGAAATTGGAG+GGG | - | chr7_1:68211624-68211643 | None:intergenic | 45.0% | |
| GAAGATGCCTCAGAAATTGG+AGG | - | chr7_1:68211626-68211645 | None:intergenic | 45.0% | |
| CAAGTTCAGTTCCTCCTCAT+TGG | - | chr7_1:68211732-68211751 | None:intergenic | 45.0% | |
| CAATGAGGAGGAACTGAACT+TGG | + | chr7_1:68211730-68211749 | Msa1033190:CDS | 45.0% | |
| ! | CCTCCATCATTTTGCGCTTG+AGG | - | chr7_1:68210923-68210942 | None:intergenic | 50.0% |
| CCTCAAGCGCAAAATGATGG+AGG | + | chr7_1:68210920-68210939 | Msa1033190:CDS | 50.0% | |
| GCAAGAGTCGAAATCGGAGA+AGG | + | chr7_1:68210950-68210969 | Msa1033190:CDS | 50.0% | |
| !! | GAGGTTGGTGGTGATGTCTT+TGG | - | chr7_1:68210978-68210997 | None:intergenic | 50.0% |
| AAGACATCACCACCAACCTC+TGG | + | chr7_1:68210978-68210997 | Msa1033190:CDS | 50.0% | |
| ATCACCACCAACCTCTGGAT+CGG | + | chr7_1:68210983-68211002 | Msa1033190:CDS | 50.0% | |
| CTGGCGATTTCTTGACCTTG+AGG | + | chr7_1:68211009-68211028 | Msa1033190:CDS | 50.0% | |
| TTCTTGACCTTGAGGCTTGG+CGG | + | chr7_1:68211017-68211036 | Msa1033190:CDS | 50.0% | |
| CTCACCATTCTCCAAGGGTT+TGG | - | chr7_1:68211060-68211079 | None:intergenic | 50.0% | |
| AATTCCTTCACTTGCGGCAC+AGG | - | chr7_1:68211122-68211141 | None:intergenic | 50.0% | |
| ! | GCTCACGCTTATGAGCGTTT+TGG | - | chr7_1:68211199-68211218 | None:intergenic | 50.0% |
| TCAAGCTCTCCACACTACCA+AGG | + | chr7_1:68211314-68211333 | Msa1033190:CDS | 50.0% | |
| CAAGCTCTCCACACTACCAA+GGG | + | chr7_1:68211315-68211334 | Msa1033190:CDS | 50.0% | |
| CACATGGGAACCAATTGGGT+TGG | - | chr7_1:68211369-68211388 | None:intergenic | 50.0% | |
| GATGAACCACCAAGCCAAGA+AGG | - | chr7_1:68211404-68211423 | None:intergenic | 50.0% | |
| !! | TGGCTTGGTGGTTCATCTTC+TGG | + | chr7_1:68211407-68211426 | Msa1033190:CDS | 50.0% |
| ! | CTTGGTGGTTCATCTTCTGG+TGG | + | chr7_1:68211410-68211429 | Msa1033190:CDS | 50.0% |
| GGTTCATCTTCTGGTGGCTA+TGG | + | chr7_1:68211416-68211435 | Msa1033190:CDS | 50.0% | |
| TCATCTTCTGGTGGCTATGG+AGG | + | chr7_1:68211419-68211438 | Msa1033190:CDS | 50.0% | |
| CATCTTCTGGTGGCTATGGA+GGG | + | chr7_1:68211420-68211439 | Msa1033190:CDS | 50.0% | |
| ! | CGTGATGCAGGAGGTGTATT+TGG | - | chr7_1:68211455-68211474 | None:intergenic | 50.0% |
| GGCATCACAAATCGTGATGC+AGG | - | chr7_1:68211467-68211486 | None:intergenic | 50.0% | |
| TGAGGCTAATCCCAATGAGG+AGG | + | chr7_1:68211718-68211737 | Msa1033190:CDS | 50.0% | |
| ! | CCTCCATCATTTTGCGCTTG+AGG | - | chr7_1:68210923-68210942 | None:intergenic | 50.0% |
| CCTCAAGCGCAAAATGATGG+AGG | + | chr7_1:68210920-68210939 | Msa1033190:CDS | 50.0% | |
| GCAAGAGTCGAAATCGGAGA+AGG | + | chr7_1:68210950-68210969 | Msa1033190:CDS | 50.0% | |
| !! | GAGGTTGGTGGTGATGTCTT+TGG | - | chr7_1:68210978-68210997 | None:intergenic | 50.0% |
| AAGACATCACCACCAACCTC+TGG | + | chr7_1:68210978-68210997 | Msa1033190:CDS | 50.0% | |
| ATCACCACCAACCTCTGGAT+CGG | + | chr7_1:68210983-68211002 | Msa1033190:CDS | 50.0% | |
| CTGGCGATTTCTTGACCTTG+AGG | + | chr7_1:68211009-68211028 | Msa1033190:CDS | 50.0% | |
| TTCTTGACCTTGAGGCTTGG+CGG | + | chr7_1:68211017-68211036 | Msa1033190:CDS | 50.0% | |
| CTCACCATTCTCCAAGGGTT+TGG | - | chr7_1:68211060-68211079 | None:intergenic | 50.0% | |
| AATTCCTTCACTTGCGGCAC+AGG | - | chr7_1:68211122-68211141 | None:intergenic | 50.0% | |
| ! | GCTCACGCTTATGAGCGTTT+TGG | - | chr7_1:68211199-68211218 | None:intergenic | 50.0% |
| TCAAGCTCTCCACACTACCA+AGG | + | chr7_1:68211314-68211333 | Msa1033190:CDS | 50.0% | |
| CAAGCTCTCCACACTACCAA+GGG | + | chr7_1:68211315-68211334 | Msa1033190:CDS | 50.0% | |
| CACATGGGAACCAATTGGGT+TGG | - | chr7_1:68211369-68211388 | None:intergenic | 50.0% | |
| GATGAACCACCAAGCCAAGA+AGG | - | chr7_1:68211404-68211423 | None:intergenic | 50.0% | |
| !! | TGGCTTGGTGGTTCATCTTC+TGG | + | chr7_1:68211407-68211426 | Msa1033190:CDS | 50.0% |
| ! | CTTGGTGGTTCATCTTCTGG+TGG | + | chr7_1:68211410-68211429 | Msa1033190:CDS | 50.0% |
| GGTTCATCTTCTGGTGGCTA+TGG | + | chr7_1:68211416-68211435 | Msa1033190:CDS | 50.0% | |
| TCATCTTCTGGTGGCTATGG+AGG | + | chr7_1:68211419-68211438 | Msa1033190:CDS | 50.0% | |
| CATCTTCTGGTGGCTATGGA+GGG | + | chr7_1:68211420-68211439 | Msa1033190:CDS | 50.0% | |
| ! | CGTGATGCAGGAGGTGTATT+TGG | - | chr7_1:68211455-68211474 | None:intergenic | 50.0% |
| GGCATCACAAATCGTGATGC+AGG | - | chr7_1:68211467-68211486 | None:intergenic | 50.0% | |
| TGAGGCTAATCCCAATGAGG+AGG | + | chr7_1:68211718-68211737 | Msa1033190:CDS | 50.0% | |
| TTCCCCACTTCTCAAGCGCT+TGG | + | chr7_1:68211167-68211186 | Msa1033190:CDS | 55.0% | |
| CTCCAAGCGCTTGAGAAGTG+GGG | - | chr7_1:68211172-68211191 | None:intergenic | 55.0% | |
| CCTCCAAGCGCTTGAGAAGT+GGG | - | chr7_1:68211173-68211192 | None:intergenic | 55.0% | |
| TCCTCCAAGCGCTTGAGAAG+TGG | - | chr7_1:68211174-68211193 | None:intergenic | 55.0% | |
| !! | TCCTTGCCTTCTTGGCTTGG+TGG | + | chr7_1:68211395-68211414 | Msa1033190:CDS | 55.0% |
| ACCACCAAGCCAAGAAGGCA+AGG | - | chr7_1:68211399-68211418 | None:intergenic | 55.0% | |
| TTCCCCACTTCTCAAGCGCT+TGG | + | chr7_1:68211167-68211186 | Msa1033190:CDS | 55.0% | |
| CTCCAAGCGCTTGAGAAGTG+GGG | - | chr7_1:68211172-68211191 | None:intergenic | 55.0% | |
| CCTCCAAGCGCTTGAGAAGT+GGG | - | chr7_1:68211173-68211192 | None:intergenic | 55.0% | |
| TCCTCCAAGCGCTTGAGAAG+TGG | - | chr7_1:68211174-68211193 | None:intergenic | 55.0% | |
| !! | TCCTTGCCTTCTTGGCTTGG+TGG | + | chr7_1:68211395-68211414 | Msa1033190:CDS | 55.0% |
| ACCACCAAGCCAAGAAGGCA+AGG | - | chr7_1:68211399-68211418 | None:intergenic | 55.0% | |
| GCATCCGATCCAGAGGTTGG+TGG | - | chr7_1:68210990-68211009 | None:intergenic | 60.0% | |
| CCAGCATCCGATCCAGAGGT+TGG | - | chr7_1:68210993-68211012 | None:intergenic | 60.0% | |
| CCAACCTCTGGATCGGATGC+TGG | + | chr7_1:68210990-68211009 | Msa1033190:CDS | 60.0% | |
| ATCGCCAGCATCCGATCCAG+AGG | - | chr7_1:68210997-68211016 | None:intergenic | 60.0% | |
| TTGACCTTGAGGCTTGGCGG+TGG | + | chr7_1:68211020-68211039 | Msa1033190:CDS | 60.0% | |
| TTCACTTGCGGCACAGGTGG+AGG | - | chr7_1:68211116-68211135 | None:intergenic | 60.0% | |
| TCCACCTGTGCCGCAAGTGA+AGG | + | chr7_1:68211115-68211134 | Msa1033190:CDS | 60.0% | |
| TCCTTCACTTGCGGCACAGG+TGG | - | chr7_1:68211119-68211138 | None:intergenic | 60.0% | |
| CCCACTTCTCAAGCGCTTGG+AGG | + | chr7_1:68211170-68211189 | Msa1033190:CDS | 60.0% | |
| ! | GGTTGGCCAGGCTAGCACTA+CGG | - | chr7_1:68211352-68211371 | None:intergenic | 60.0% |
| ! | GCTAGCCTGGCCAACCCAAT+TGG | + | chr7_1:68211356-68211375 | Msa1033190:CDS | 60.0% |
| !! | GGGAACCAATTGGGTTGGCC+AGG | - | chr7_1:68211364-68211383 | None:intergenic | 60.0% |
| GCATCCGATCCAGAGGTTGG+TGG | - | chr7_1:68210990-68211009 | None:intergenic | 60.0% | |
| CCAGCATCCGATCCAGAGGT+TGG | - | chr7_1:68210993-68211012 | None:intergenic | 60.0% | |
| CCAACCTCTGGATCGGATGC+TGG | + | chr7_1:68210990-68211009 | Msa1033190:CDS | 60.0% | |
| ATCGCCAGCATCCGATCCAG+AGG | - | chr7_1:68210997-68211016 | None:intergenic | 60.0% | |
| TTGACCTTGAGGCTTGGCGG+TGG | + | chr7_1:68211020-68211039 | Msa1033190:CDS | 60.0% | |
| TTCACTTGCGGCACAGGTGG+AGG | - | chr7_1:68211116-68211135 | None:intergenic | 60.0% | |
| TCCACCTGTGCCGCAAGTGA+AGG | + | chr7_1:68211115-68211134 | Msa1033190:CDS | 60.0% | |
| TCCTTCACTTGCGGCACAGG+TGG | - | chr7_1:68211119-68211138 | None:intergenic | 60.0% | |
| CCCACTTCTCAAGCGCTTGG+AGG | + | chr7_1:68211170-68211189 | Msa1033190:CDS | 60.0% | |
| ! | GGTTGGCCAGGCTAGCACTA+CGG | - | chr7_1:68211352-68211371 | None:intergenic | 60.0% |
| ! | GCTAGCCTGGCCAACCCAAT+TGG | + | chr7_1:68211356-68211375 | Msa1033190:CDS | 60.0% |
| !! | GGGAACCAATTGGGTTGGCC+AGG | - | chr7_1:68211364-68211383 | None:intergenic | 60.0% |
| TGTGCCACCGCCAAGCCTCA+AGG | - | chr7_1:68211027-68211046 | None:intergenic | 65.0% | |
| TGTGCCACCGCCAAGCCTCA+AGG | - | chr7_1:68211027-68211046 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 68210903 | 68211766 | 68210903 | ID=Msa1033190;Name=Msa1033190 |
| chr7_1 | mRNA | 68210903 | 68211766 | 68210903 | ID=Msa1033190-mRNA-1;Parent=Msa1033190;Name=Msa1033190-mRNA-1;_AED=0.25;_eAED=0.27;_QI=0|-1|0|1|-1|1|1|0|287 |
| chr7_1 | exon | 68210903 | 68211766 | 68210903 | ID=Msa1033190-mRNA-1:exon:15899;Parent=Msa1033190-mRNA-1 |
| chr7_1 | CDS | 68210903 | 68211766 | 68210903 | ID=Msa1033190-mRNA-1:cds;Parent=Msa1033190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
