AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1035140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1035140 MtrunA17_Chr7g0258471 91.845 233 16 1 48 280 182 411 1.51e-153 434
Msa1035140 MtrunA17_Chr1g0175021 53.361 238 72 10 55 264 8 234 1.24e-60 192
Msa1035140 MtrunA17_Chr3g0122411 35.583 163 86 5 48 197 205 361 1.06e-14 73.6
Msa1035140 MtrunA17_Chr2g0308321 57.143 63 25 2 48 110 211 271 1.87e-12 67.0
Msa1035140 MtrunA17_Chr2g0302791 44.000 75 35 1 37 111 168 235 2.69e-12 67.0
Msa1035140 MtrunA17_Chr5g0420051 80.000 35 7 0 48 82 221 255 5.12e-12 65.9
Msa1035140 MtrunA17_Chr2g0282521 52.632 57 22 1 32 83 83 139 8.99e-12 61.6
Msa1035140 MtrunA17_Chr4g0061651 77.143 35 8 0 48 82 163 197 2.21e-11 63.9
Msa1035140 MtrunA17_Chr8g0386271 62.791 43 16 0 48 90 139 181 2.26e-11 63.5
Msa1035140 MtrunA17_Chr7g0224821 65.116 43 15 0 48 90 117 159 2.32e-11 63.5
Msa1035140 MtrunA17_Chr8g0360361 69.231 39 12 0 48 86 105 143 2.39e-11 61.2
Msa1035140 MtrunA17_Chr1g0162871 67.500 40 13 0 48 87 144 183 4.63e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1035140 AT2G42200.1 40.206 291 95 14 44 280 110 375 1.73e-32 123
Msa1035140 AT3G57920.1 35.294 272 121 15 48 280 99 354 3.82e-27 108
Msa1035140 AT1G69170.1 61.404 57 20 1 48 102 164 220 4.09e-12 66.2
Msa1035140 AT3G60030.1 63.636 44 16 0 44 87 163 206 9.21e-12 65.9
Msa1035140 AT2G33810.1 76.471 34 8 0 48 81 94 127 1.61e-11 61.2
Msa1035140 AT2G47070.1 70.732 41 12 0 44 84 142 182 1.90e-11 64.7
Msa1035140 AT2G47070.2 70.732 41 12 0 44 84 13 53 2.08e-11 64.7
Msa1035140 AT1G53160.3 69.231 39 12 0 48 86 94 132 3.03e-11 61.2
Msa1035140 AT1G53160.2 69.231 39 12 0 48 86 94 132 6.12e-11 60.5
Msa1035140 AT1G53160.1 69.231 39 12 0 48 86 94 132 6.12e-11 60.5
Msa1035140 AT5G50570.1 65.000 40 14 0 48 87 141 180 6.43e-11 62.4
Msa1035140 AT5G50570.2 65.000 40 14 0 48 87 141 180 6.43e-11 62.4
Msa1035140 AT5G50670.1 65.000 40 14 0 48 87 141 180 6.43e-11 62.4
Msa1035140 AT5G50670.2 65.000 40 14 0 48 87 141 180 6.43e-11 62.4
Msa1035140 AT3G15270.1 60.000 45 18 0 37 81 92 136 8.55e-11 60.1

Find 137 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCCTACTGTTACTGTTTC+TGG 0.046797 7_1:-70878622 Msa1035140:CDS
TAATGCACTTGTTTGCTTTC+AGG 0.104893 7_1:-70875488 Msa1035140:three_prime_UTR
TCAGAAGAGTCCTCTCTTAA+TGG 0.174051 7_1:-70878871 Msa1035140:five_prime_UTR
TCTCTTAATGGCTTGAAATT+TGG 0.181393 7_1:-70878859 Msa1035140:five_prime_UTR
TTATCATGGTTTCAAATTTC+AGG 0.208414 7_1:-70875302 Msa1035140:three_prime_UTR
CTTGATGCTCTTGCTTGTTT+TGG 0.214912 7_1:-70875403 Msa1035140:three_prime_UTR
TTCAGCATGTTATTCAATTC+AGG 0.240222 7_1:+70875734 None:intergenic
GATTGTTGTGGTTTGATTTC+CGG 0.241931 7_1:+70875946 None:intergenic
GCTGCTAGTTCTTCTTCTTC+TGG 0.247149 7_1:-70878778 Msa1035140:five_prime_UTR
CTCAGCAAGTTGATGAAATC+TGG 0.259425 7_1:+70876302 None:intergenic
CAGAGGTGGCAGCTTCTTAA+TGG 0.282409 7_1:-70876017 Msa1035140:CDS
AGTTTCTCAGACCATGTTTC+GGG 0.285688 7_1:+70875981 None:intergenic
GGAGTGGTGGTTGTTGTTGT+TGG 0.318431 7_1:+70879025 None:intergenic
GAAGTTGTTTGATGTGGATT+TGG 0.347546 7_1:-70875280 Msa1035140:three_prime_UTR
CCTCACACACCAATGGATTC+AGG 0.352141 7_1:-70878907 Msa1035140:five_prime_UTR
GCTAGCCTTGCTTCACTTTG+TGG 0.353119 7_1:-70875353 Msa1035140:three_prime_UTR
ATTGTTGTGGTTTGATTTCC+GGG 0.356658 7_1:+70875947 None:intergenic
TTTGGTTTGTTTAAACTGTT+AGG 0.360942 7_1:-70875385 Msa1035140:three_prime_UTR
AATAACATGCTGAATTTCAA+TGG 0.376067 7_1:-70875725 Msa1035140:CDS
GGGACAACCTCGTAATTGTT+TGG 0.378584 7_1:+70875647 None:intergenic
GCAGGGAAGGAGGCATTATA+TGG 0.380825 7_1:-70875555 Msa1035140:CDS
GAGTTTCTCAGACCATGTTT+CGG 0.384822 7_1:+70875980 None:intergenic
GAACTAGCAGCAATGGTAGT+AGG 0.400161 7_1:+70878790 None:intergenic
TACGAGGTTGTCCCTGATCT+TGG 0.400962 7_1:-70875638 Msa1035140:CDS
AACAATCGGTTGGCCTTGGC+CGG 0.403146 7_1:-70875930 Msa1035140:CDS
TCTTCTTCTGGTTCAAAGAA+AGG 0.412152 7_1:-70878766 Msa1035140:five_prime_UTR
GACTCCGGTGTAAGTTTCCT+CGG 0.423473 7_1:+70875826 None:intergenic
CTAGTTATTTGAGATTATCA+TGG 0.427605 7_1:-70875316 Msa1035140:three_prime_UTR
GGACAAGCTTCCCTGGTGCC+AGG 0.429885 7_1:-70875856 Msa1035140:CDS
GGTTGTCCCTGATCTTGGTC+GGG 0.430138 7_1:-70875633 Msa1035140:CDS
ATCCATTGGTGTGTGAGGTT+TGG 0.434348 7_1:+70878912 None:intergenic
ATATGGATGTAGAACATTCC+AGG 0.443177 7_1:-70875538 Msa1035140:CDS
AAGAAGAGAGTGAATGATAG+TGG 0.443686 7_1:+70879069 None:intergenic
GTGGGTGGGACAAGCTTCCC+TGG 0.445665 7_1:-70875863 Msa1035140:CDS
CAACTTGCTGAGTTTGATCA+AGG 0.446806 7_1:-70876291 Msa1035140:CDS
CTCTTCTGTCAAATCAAACA+TGG 0.449340 7_1:-70875781 Msa1035140:CDS
ATGTGACCCCGACCAAGATC+AGG 0.454044 7_1:+70875626 None:intergenic
CATTGGTGTGTGAGGTTTGG+TGG 0.454368 7_1:+70878915 None:intergenic
TGAGCTTGATCTGTCGCAGC+AGG 0.460221 7_1:-70875573 Msa1035140:CDS
ATGTTATTCAATTCAGGACT+TGG 0.462140 7_1:+70875740 None:intergenic
AGTTTCCTCGGGAGGATGCC+TGG 0.464469 7_1:+70875838 None:intergenic
CCACAACAATCGGTTGGCCT+TGG 0.472552 7_1:-70875934 Msa1035140:CDS
GTGGAAGACAAAAGAGGAAG+AGG 0.472761 7_1:+70879101 None:intergenic
GGTTGCTAGATTGTGCTCAT+TGG 0.475389 7_1:+70878939 None:intergenic
CAATCGGTTGGCCTTGGCCG+GGG 0.476765 7_1:-70875928 Msa1035140:CDS
TTGGCCTTGGCCGGGGAACA+CGG 0.477293 7_1:-70875921 Msa1035140:CDS
CTGTTTCTGGTCTTCAACAA+AGG 0.478086 7_1:-70878609 Msa1035140:CDS
TTCTTGCAAGGTTCGGTGGG+TGG 0.479005 7_1:-70875878 Msa1035140:CDS
ACAATCGGTTGGCCTTGGCC+GGG 0.480117 7_1:-70875929 Msa1035140:CDS
TGACCATTGAGAAGATTCAT+AGG 0.480203 7_1:+70875514 None:intergenic
ACCATAAGATTTAGAGAGCA+TGG 0.482041 7_1:-70877162 Msa1035140:intron
TATCTTCAAAATAGATTCGT+TGG 0.483954 7_1:+70878836 None:intergenic
AGGTTGTCCCTGATCTTGGT+CGG 0.485014 7_1:-70875634 Msa1035140:CDS
GGTCACATTTCGCAGCCTCT+TGG 0.489072 7_1:-70875611 Msa1035140:CDS
CCACCGAACCTTGCAAGAAA+AGG 0.489851 7_1:+70875882 None:intergenic
CATGATAATCTCAAATAACT+AGG 0.490879 7_1:+70875317 None:intergenic
TTGAGAAGATTCATAGGCCC+TGG 0.491228 7_1:+70875520 None:intergenic
TCTTGCAAGGTTCGGTGGGT+GGG 0.491827 7_1:-70875877 Msa1035140:CDS
CCTCTTGGTAGCCAACTCTC+TGG 0.496840 7_1:-70875596 Msa1035140:CDS
GACTCCGTGTTCCCCGGCCA+AGG 0.497185 7_1:+70875917 None:intergenic
GCAAATAAATGTTGCAATAG+CGG 0.497198 7_1:-70875224 Msa1035140:three_prime_UTR
AGGTTAAGAGAGAGCTTGGT+GGG 0.497276 7_1:+70876214 None:intergenic
ATAACATGCTGAATTTCAAT+GGG 0.498202 7_1:-70875724 Msa1035140:CDS
CCACCTAGGTGTCAAGTTGA+AGG 0.498451 7_1:-70878715 Msa1035140:five_prime_UTR
CGTGAGGTTAAGAGAGAGCT+TGG 0.499740 7_1:+70876210 None:intergenic
TTTCACAAATATTTGAACTC+AGG 0.499742 7_1:-70875451 Msa1035140:three_prime_UTR
TTTAAACTGTTAGGCAAGGT+GGG 0.501008 7_1:-70875376 Msa1035140:three_prime_UTR
GTGGTTTGATTTCCGGGTGA+TGG 0.501805 7_1:+70875953 None:intergenic
GGAAATCAAACCACAACAAT+CGG 0.503631 7_1:-70875944 Msa1035140:CDS
AGAAGAAGAACTAGCAGCAA+TGG 0.512559 7_1:+70878783 None:intergenic
GACCAGAAACAGTAACAGTA+GGG 0.513635 7_1:+70878620 None:intergenic
GAAGACAAAAGAGGAAGAGG+TGG 0.515918 7_1:+70879104 None:intergenic
TCAGCAAGTTGATGAAATCT+GGG 0.516942 7_1:+70876303 None:intergenic
TTTCAGGAAGTTGTTTGATG+TGG 0.519703 7_1:-70875286 Msa1035140:three_prime_UTR
CTGGTCATAATGAGCGTCGC+AGG 0.521874 7_1:-70876242 Msa1035140:CDS
TCTGGTTCAAAGAAAGGTAG+AGG 0.529696 7_1:-70878760 Msa1035140:five_prime_UTR
AGTGAGAGAATAGTATGTGA+GGG 0.536983 7_1:+70878994 None:intergenic
GTTTAAACTGTTAGGCAAGG+TGG 0.538745 7_1:-70875377 Msa1035140:three_prime_UTR
ACAGTTTGAATCTGTGACTC+CGG 0.541431 7_1:+70875811 None:intergenic
GGAAAGTGAGAAGTGAACTA+AGG 0.545461 7_1:-70875430 Msa1035140:three_prime_UTR
GTTAAGAGAGAGCTTGGTGG+GGG 0.545607 7_1:+70876216 None:intergenic
AGTTGCCGCAGACGACTAGC+TGG 0.548200 7_1:-70876261 Msa1035140:CDS
AGTGAAGTGGAAGACAAAAG+AGG 0.550668 7_1:+70879095 None:intergenic
TGAGAGAATAGTATGTGAGG+GGG 0.554375 7_1:+70878996 None:intergenic
ACTCCGGTGTAAGTTTCCTC+GGG 0.556391 7_1:+70875827 None:intergenic
CGGGAGGATGCCTGGCACCA+GGG 0.558370 7_1:+70875846 None:intergenic
CCTGAATCCATTGGTGTGTG+AGG 0.559308 7_1:+70878907 None:intergenic
TTTGTTTAAACTGTTAGGCA+AGG 0.559342 7_1:-70875380 Msa1035140:three_prime_UTR
CACCAAACCTCACACACCAA+TGG 0.559379 7_1:-70878914 Msa1035140:five_prime_UTR
TCTTCTGTCAAATCAAACAT+GGG 0.559601 7_1:-70875780 Msa1035140:CDS
CAACATGCTACATCTTCTCA+TGG 0.560658 7_1:-70875689 Msa1035140:CDS
GAGTGAGAGAATAGTATGTG+AGG 0.562607 7_1:+70878993 None:intergenic
CCAAGGCCAACCGATTGTTG+TGG 0.562819 7_1:+70875934 None:intergenic
GGGCCTATGAATCTTCTCAA+TGG 0.567201 7_1:-70875517 Msa1035140:CDS
CATCCTTCAACTTGACACCT+AGG 0.569400 7_1:+70878712 None:intergenic
TGGTGTGTGAGGTTTGGTGG+TGG 0.575688 7_1:+70878918 None:intergenic
TATGGATGTAGAACATTCCA+GGG 0.576787 7_1:-70875537 Msa1035140:CDS
TTTGCTTCAAACCCGAAACA+TGG 0.581269 7_1:-70875992 Msa1035140:CDS
ATCAAACCACAACAATCGGT+TGG 0.583449 7_1:-70875940 Msa1035140:CDS
GTTGTCCCTGATCTTGGTCG+GGG 0.585300 7_1:-70875632 Msa1035140:CDS
GTGAGAGAATAGTATGTGAG+GGG 0.589167 7_1:+70878995 None:intergenic
GAGAGAATAGTATGTGAGGG+GGG 0.589528 7_1:+70878997 None:intergenic
TTGATCTGTCGCAGCAGGGA+AGG 0.589630 7_1:-70875568 Msa1035140:CDS
TTAAACTGTTAGGCAAGGTG+GGG 0.589746 7_1:-70875375 Msa1035140:three_prime_UTR
GATCAAGCTCACCAGAGAGT+TGG 0.589921 7_1:+70875585 None:intergenic
ATCTGTCGCAGCAGGGAAGG+AGG 0.591353 7_1:-70875565 Msa1035140:CDS
AGACCAGAAACAGTAACAGT+AGG 0.596328 7_1:+70878619 None:intergenic
AGATGTAGCATGTTGTGTCA+TGG 0.599172 7_1:+70875697 None:intergenic
TCACAATCACAATGCTACAA+AGG 0.601296 7_1:+70875252 None:intergenic
TGGTGCCAGGCATCCTCCCG+AGG 0.606308 7_1:-70875843 Msa1035140:CDS
GGTTCAAAGAAAGGTAGAGG+TGG 0.615424 7_1:-70878757 Msa1035140:five_prime_UTR
TGCAAGAAAAGGTTGTCAGA+TGG 0.616796 7_1:+70875893 None:intergenic
ATTGTTTGGAATTTGATGCA+TGG 0.618224 7_1:+70875661 None:intergenic
CCGGTGTAAGTTTCCTCGGG+AGG 0.620164 7_1:+70875830 None:intergenic
AGAAACTCACTTCCATCACC+CGG 0.621021 7_1:-70875965 Msa1035140:CDS
AAATTTCAAGCCATTAAGAG+AGG 0.629126 7_1:+70878861 None:intergenic
GTTCAAAGAAAGGTAGAGGT+GGG 0.632761 7_1:-70878756 Msa1035140:five_prime_UTR
TGTGACCCCGACCAAGATCA+GGG 0.634119 7_1:+70875627 None:intergenic
ACAAACCACAAAGTGAAGCA+AGG 0.634591 7_1:+70875348 None:intergenic
GGTTAAGAGAGAGCTTGGTG+GGG 0.636108 7_1:+70876215 None:intergenic
AAGTTGATGAAATCTGGGAA+AGG 0.641902 7_1:+70876308 None:intergenic
GAGGTTAAGAGAGAGCTTGG+TGG 0.642449 7_1:+70876213 None:intergenic
ATGATAGTGGAAAAGTGAAG+TGG 0.643272 7_1:+70879082 None:intergenic
AGAAAGTCTGGCAAAGCGTG+AGG 0.643906 7_1:+70876194 None:intergenic
GAGCTTGATCTGTCGCAGCA+GGG 0.648639 7_1:-70875572 Msa1035140:CDS
CTTCTGTCAAATCAAACATG+GGG 0.651750 7_1:-70875779 Msa1035140:CDS
TCAACAGGTAACAGCGACAG+AGG 0.670073 7_1:-70876034 Msa1035140:intron
GAGTTGCCTCCTGAATCCAT+TGG 0.670435 7_1:+70878898 None:intergenic
CCTTCAACTTGACACCTAGG+TGG 0.670664 7_1:+70878715 None:intergenic
TATGACCAGCTAGTCGTCTG+CGG 0.676914 7_1:+70876256 None:intergenic
ACAGGTAACAGCGACAGAGG+TGG 0.683485 7_1:-70876031 Msa1035140:intron
CCAGAGAGTTGGCTACCAAG+AGG 0.684462 7_1:+70875596 None:intergenic
ACCAGAAACAGTAACAGTAG+GGG 0.697400 7_1:+70878621 None:intergenic
CCTCCCGAGGAAACTTACAC+CGG 0.706732 7_1:-70875830 Msa1035140:CDS
TCAAATTCCAAACAATTACG+AGG 0.709188 7_1:-70875654 Msa1035140:CDS
CACACACCAATGGATTCAGG+AGG 0.709638 7_1:-70878904 Msa1035140:five_prime_UTR
TTCAACATTCTCAACCACCT+AGG 0.711691 7_1:-70878729 Msa1035140:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTATTTTATTTTATTTT+TGG - chr7_1:70877943-70877962 Msa1035140:intron 0.0%
!!! ATTTGATTCCTTTTTTTATT+TGG - chr7_1:70876147-70876166 Msa1035140:intron 15.0%
!! TATTATACTATACTAATGTT+AGG - chr7_1:70877554-70877573 Msa1035140:intron 15.0%
!!! TTTTTTCTTCTTAATGTGTA+TGG - chr7_1:70875779-70875798 Msa1035140:CDS 20.0%
!! AAATAAATACCCAAAAAAAC+TGG + chr7_1:70875825-70875844 None:intergenic 20.0%
!! GTATGATAAAACTAAGTATT+TGG - chr7_1:70876635-70876654 Msa1035140:intron 20.0%
!! TTATTGAGAATTAGTAACAT+TGG - chr7_1:70876938-70876957 Msa1035140:intron 20.0%
!!! GTTTTGTCTTTTTAATCTTA+TGG - chr7_1:70877272-70877291 Msa1035140:intron 20.0%
!!! TTTTCCAATTATTCACATTA+TGG + chr7_1:70877371-70877390 None:intergenic 20.0%
!!! TTTTATTTTTGGAAACAAGT+AGG - chr7_1:70877954-70877973 Msa1035140:intron 20.0%
!!! TTTATTTTTGGAAACAAGTA+GGG - chr7_1:70877955-70877974 Msa1035140:intron 20.0%
! TATCTTCAAAATAGATTCGT+TGG + chr7_1:70875488-70875507 None:intergenic 25.0%
! AAAAAGAGGTAGGTTAAAAA+GGG + chr7_1:70875764-70875783 None:intergenic 25.0%
! AAAAAAGAGGTAGGTTAAAA+AGG + chr7_1:70875765-70875784 None:intergenic 25.0%
! ATTAAGAAGAAAAAAGAGGT+AGG + chr7_1:70875774-70875793 None:intergenic 25.0%
! ACACATTAAGAAGAAAAAAG+AGG + chr7_1:70875778-70875797 None:intergenic 25.0%
!! ATGGTATTTTCCAGTTTTTT+TGG - chr7_1:70875812-70875831 Msa1035140:CDS 25.0%
!!! TGGTATTTTCCAGTTTTTTT+GGG - chr7_1:70875813-70875832 Msa1035140:CDS 25.0%
!! TATTTTGTTCTGTTATTCTC+CGG - chr7_1:70875847-70875866 Msa1035140:CDS 25.0%
! ACCTATAATACAATAAAACC+CGG + chr7_1:70875869-70875888 None:intergenic 25.0%
! TATTATAGGTGTAGTATTGT+AGG - chr7_1:70875879-70875898 Msa1035140:CDS 25.0%
!! TGCTTTTGATAAGTTTGATT+TGG - chr7_1:70876033-70876052 Msa1035140:intron 25.0%
!!! GCTTTTGATAAGTTTGATTT+GGG - chr7_1:70876034-70876053 Msa1035140:intron 25.0%
! TCGCAATTCCAAATAAAAAA+AGG + chr7_1:70876158-70876177 None:intergenic 25.0%
!! CAGTGACAGATTATATATTT+TGG + chr7_1:70876263-70876282 None:intergenic 25.0%
!! AAACACCAAAGTATTAGTAT+AGG + chr7_1:70876287-70876306 None:intergenic 25.0%
!!! ACACTTTTTTTATAACTCCA+TGG + chr7_1:70876381-70876400 None:intergenic 25.0%
!!! GAGTTATAAAAAAAGTGTTC+AGG - chr7_1:70876383-70876402 Msa1035140:intron 25.0%
!!! TAAAAAAAGTGTTCAGGTTT+AGG - chr7_1:70876389-70876408 Msa1035140:intron 25.0%
! ATATACAAGGAACAATAAAG+AGG + chr7_1:70876528-70876547 None:intergenic 25.0%
! TTTATTGTTCCTTGTATATG+TGG - chr7_1:70876529-70876548 Msa1035140:intron 25.0%
! TACATTTGTAATAATACTGC+AGG + chr7_1:70876749-70876768 None:intergenic 25.0%
! ATTACAAATGTATATGCTAG+TGG - chr7_1:70876757-70876776 Msa1035140:intron 25.0%
! TTACAAATGTATATGCTAGT+GGG - chr7_1:70876758-70876777 Msa1035140:intron 25.0%
!! TTCATCTCTATTCTGTTTTA+CGG - chr7_1:70877012-70877031 Msa1035140:intron 25.0%
! TGTTCCATAATGTGAATAAT+TGG - chr7_1:70877364-70877383 Msa1035140:intron 25.0%
! CTGCCTAATAAATAACATAA+CGG + chr7_1:70877632-70877651 None:intergenic 25.0%
! TGAATAAGCAAGAAAACTAA+AGG - chr7_1:70877676-70877695 Msa1035140:intron 25.0%
!!! TATTTTGAGAATGCATTGAT+TGG - chr7_1:70877717-70877736 Msa1035140:intron 25.0%
!!! ATTTTGAGAATGCATTGATT+GGG - chr7_1:70877718-70877737 Msa1035140:intron 25.0%
!! TATTTGACACTTTTATCAAC+AGG - chr7_1:70878272-70878291 Msa1035140:intron 25.0%
! AATAACATGCTGAATTTCAA+TGG - chr7_1:70878596-70878615 Msa1035140:CDS 25.0%
! ATAACATGCTGAATTTCAAT+GGG - chr7_1:70878597-70878616 Msa1035140:CDS 25.0%
! TTTCACAAATATTTGAACTC+AGG - chr7_1:70878870-70878889 Msa1035140:five_prime_UTR 25.0%
!!! TTTGGTTTGTTTAAACTGTT+AGG - chr7_1:70878936-70878955 Msa1035140:five_prime_UTR 25.0%
! CATGATAATCTCAAATAACT+AGG + chr7_1:70879007-70879026 None:intergenic 25.0%
!! CTAGTTATTTGAGATTATCA+TGG - chr7_1:70879005-70879024 Msa1035140:five_prime_UTR 25.0%
! TTATCATGGTTTCAAATTTC+AGG - chr7_1:70879019-70879038 Msa1035140:five_prime_UTR 25.0%
AAATTTCAAGCCATTAAGAG+AGG + chr7_1:70875463-70875482 None:intergenic 30.0%
TCTCTTAATGGCTTGAAATT+TGG - chr7_1:70875462-70875481 Msa1035140:three_prime_UTR 30.0%
TCTTCTTAATGTGTATGGTA+AGG - chr7_1:70875784-70875803 Msa1035140:CDS 30.0%
! ATTTTGTTCTGTTATTCTCC+GGG - chr7_1:70875848-70875867 Msa1035140:CDS 30.0%
!!! TCCGGGTTTTATTGTATTAT+AGG - chr7_1:70875865-70875884 Msa1035140:CDS 30.0%
TCATACTATGTTATCCTGTT+TGG - chr7_1:70875915-70875934 Msa1035140:CDS 30.0%
ACTTATCAAAAGCAAAAGCA+CGG + chr7_1:70876027-70876046 None:intergenic 30.0%
GCAAAAAAACAAAGTACAAC+CGG + chr7_1:70876071-70876090 None:intergenic 30.0%
! AGGAATCAAATTCTCTGAAA+AGG + chr7_1:70876138-70876157 None:intergenic 30.0%
ACTGACCTATACTAATACTT+TGG - chr7_1:70876279-70876298 Msa1035140:CDS 30.0%
!!! ACTAATACTTTGGTGTTTTG+AGG - chr7_1:70876289-70876308 Msa1035140:CDS 30.0%
! GTGTGATATTTTGTTCCTTT+TGG - chr7_1:70876463-70876482 Msa1035140:intron 30.0%
TCCATTCAATTTCATTTCTC+TGG + chr7_1:70876573-70876592 None:intergenic 30.0%
GGGTTCATTTAGATCAATAA+AGG + chr7_1:70876713-70876732 None:intergenic 30.0%
TTATTGATCTAAATGAACCC+AGG - chr7_1:70876713-70876732 Msa1035140:intron 30.0%
TATTGATCTAAATGAACCCA+GGG - chr7_1:70876714-70876733 Msa1035140:intron 30.0%
ATTAGTAACATTGGTATTGC+TGG - chr7_1:70876947-70876966 Msa1035140:intron 30.0%
TTCTGTGTTGTGTATATATG+TGG - chr7_1:70877189-70877208 Msa1035140:intron 30.0%
AAAAAGACAAAACCAACAGT+TGG + chr7_1:70877265-70877284 None:intergenic 30.0%
TTTAATCTTATGGCTCATCT+AGG - chr7_1:70877282-70877301 Msa1035140:intron 30.0%
! GACCAACATTATTAGGTTTT+AGG - chr7_1:70877603-70877622 Msa1035140:intron 30.0%
TGCCTAAAACCTAATAATGT+TGG + chr7_1:70877608-70877627 None:intergenic 30.0%
! CAGCCGTTATGTTATTTATT+AGG - chr7_1:70877626-70877645 Msa1035140:intron 30.0%
! CGTTATGTTATTTATTAGGC+AGG - chr7_1:70877630-70877649 Msa1035140:intron 30.0%
! TATGTTATTTATTAGGCAGG+CGG - chr7_1:70877633-70877652 Msa1035140:intron 30.0%
AAACTAAAGGAAAGATCAGT+AGG - chr7_1:70877689-70877708 Msa1035140:intron 30.0%
ATATCATCTTTCGTAAGAGT+TGG + chr7_1:70877835-70877854 None:intergenic 30.0%
CATCTCTCTTTAGCATAAAT+TGG - chr7_1:70877907-70877926 Msa1035140:intron 30.0%
AAAAACAGATGAAGAAAGTC+TGG + chr7_1:70878142-70878161 None:intergenic 30.0%
! AGACTTTCTTCATCTGTTTT+TGG - chr7_1:70878141-70878160 Msa1035140:intron 30.0%
GAACAAAAATTGAAAGCAGA+GGG + chr7_1:70878200-70878219 None:intergenic 30.0%
TGAACAAAAATTGAAAGCAG+AGG + chr7_1:70878201-70878220 None:intergenic 30.0%
TCTTCTGTCAAATCAAACAT+GGG - chr7_1:70878541-70878560 Msa1035140:intron 30.0%
ATGTTATTCAATTCAGGACT+TGG + chr7_1:70878584-70878603 None:intergenic 30.0%
TTCAGCATGTTATTCAATTC+AGG + chr7_1:70878590-70878609 None:intergenic 30.0%
! ATTGTTTGGAATTTGATGCA+TGG + chr7_1:70878663-70878682 None:intergenic 30.0%
TCAAATTCCAAACAATTACG+AGG - chr7_1:70878667-70878686 Msa1035140:CDS 30.0%
TTTGTTTAAACTGTTAGGCA+AGG - chr7_1:70878941-70878960 Msa1035140:five_prime_UTR 30.0%
GCAAATAAATGTTGCAATAG+CGG - chr7_1:70879097-70879116 Msa1035140:five_prime_UTR 30.0%
!! ATGATAGTGGAAAAGTGAAG+TGG + chr7_1:70875242-70875261 None:intergenic 35.0%
AAGAAGAGAGTGAATGATAG+TGG + chr7_1:70875255-70875274 None:intergenic 35.0%
AGTGAGAGAATAGTATGTGA+GGG + chr7_1:70875330-70875349 None:intergenic 35.0%
!! TCTTCTTCTGGTTCAAAGAA+AGG - chr7_1:70875555-70875574 Msa1035140:CDS 35.0%
TGTGTATGGTAAGGACATTA+TGG - chr7_1:70875793-70875812 Msa1035140:CDS 35.0%
ACTATGTTATCCTGTTTGGT+CGG - chr7_1:70875919-70875938 Msa1035140:CDS 35.0%
TATAATTGAACCGACCAAAC+AGG + chr7_1:70875932-70875951 None:intergenic 35.0%
TCTTGTACTTCACTTGTGTT+TGG - chr7_1:70876184-70876203 Msa1035140:CDS 35.0%
TAGACTCCTACATACCTAAA+CGG + chr7_1:70876322-70876341 None:intergenic 35.0%
GGTATGTAGGAGTCTAAAAA+AGG - chr7_1:70876326-70876345 Msa1035140:CDS 35.0%
TTGATTTATCTGTTCTGCCA+TGG - chr7_1:70876361-70876380 Msa1035140:intron 35.0%
! GTGTTCAGGTTTAGGATAAT+AGG - chr7_1:70876397-70876416 Msa1035140:intron 35.0%
! TCAGGTTTAGGATAATAGGA+TGG - chr7_1:70876401-70876420 Msa1035140:intron 35.0%
GAACTATAAAGAGGACCAAA+AGG + chr7_1:70876481-70876500 None:intergenic 35.0%
ATCTCACAGGAACTATAAAG+AGG + chr7_1:70876490-70876509 None:intergenic 35.0%
CAAAAGGAACAAAATCTCAC+AGG + chr7_1:70876503-70876522 None:intergenic 35.0%
! CTGTGAGATTTTGTTCCTTT+TGG - chr7_1:70876501-70876520 Msa1035140:intron 35.0%
GAACAATAAAGAGGACCAAA+AGG + chr7_1:70876519-70876538 None:intergenic 35.0%
!!! TCTCTGGCTTTTTCATTTAC+AGG + chr7_1:70876557-70876576 None:intergenic 35.0%
GCCAGAGAAATGAAATTGAA+TGG - chr7_1:70876569-70876588 Msa1035140:intron 35.0%
AATGAAATTGAATGGACGCA+TGG - chr7_1:70876577-70876596 Msa1035140:intron 35.0%
! CAAGCATGCATGAATTTTAG+AGG - chr7_1:70877106-70877125 Msa1035140:intron 35.0%
ACCATAAGATTTAGAGAGCA+TGG - chr7_1:70877159-70877178 Msa1035140:intron 35.0%
ACCATGCTCTCTAAATCTTA+TGG + chr7_1:70877163-70877182 None:intergenic 35.0%
GTACACCTTGTAGTAAGTTA+AGG - chr7_1:70877332-70877351 Msa1035140:intron 35.0%
ATGCACCTTAACTTACTACA+AGG + chr7_1:70877340-70877359 None:intergenic 35.0%
AGGCAATGACCAACATTATT+AGG - chr7_1:70877596-70877615 Msa1035140:intron 35.0%
TTTAAAAGAATTCGTGAGCC+TGG + chr7_1:70877749-70877768 None:intergenic 35.0%
! AGGCTCACGAATTCTTTTAA+AGG - chr7_1:70877748-70877767 Msa1035140:intron 35.0%
!! AAGTTGATGAAATCTGGGAA+AGG + chr7_1:70878016-70878035 None:intergenic 35.0%
!! TCAGCAAGTTGATGAAATCT+GGG + chr7_1:70878021-70878040 None:intergenic 35.0%
! ATTGTTGTGGTTTGATTTCC+GGG + chr7_1:70878377-70878396 None:intergenic 35.0%
! GATTGTTGTGGTTTGATTTC+CGG + chr7_1:70878378-70878397 None:intergenic 35.0%
GGAAATCAAACCACAACAAT+CGG - chr7_1:70878377-70878396 Msa1035140:intron 35.0%
CTCTTCTGTCAAATCAAACA+TGG - chr7_1:70878540-70878559 Msa1035140:intron 35.0%
CTTCTGTCAAATCAAACATG+GGG - chr7_1:70878542-70878561 Msa1035140:intron 35.0%
ATATGGATGTAGAACATTCC+AGG - chr7_1:70878783-70878802 Msa1035140:five_prime_UTR 35.0%
TATGGATGTAGAACATTCCA+GGG - chr7_1:70878784-70878803 Msa1035140:five_prime_UTR 35.0%
TGACCATTGAGAAGATTCAT+AGG + chr7_1:70878810-70878829 None:intergenic 35.0%
TAATGCACTTGTTTGCTTTC+AGG - chr7_1:70878833-70878852 Msa1035140:five_prime_UTR 35.0%
TTTAAACTGTTAGGCAAGGT+GGG - chr7_1:70878945-70878964 Msa1035140:five_prime_UTR 35.0%
TTTCAGGAAGTTGTTTGATG+TGG - chr7_1:70879035-70879054 Msa1035140:five_prime_UTR 35.0%
GAAGTTGTTTGATGTGGATT+TGG - chr7_1:70879041-70879060 Msa1035140:five_prime_UTR 35.0%
TCACAATCACAATGCTACAA+AGG + chr7_1:70879072-70879091 None:intergenic 35.0%
AGTGAAGTGGAAGACAAAAG+AGG + chr7_1:70875229-70875248 None:intergenic 40.0%
TGAGAGAATAGTATGTGAGG+GGG + chr7_1:70875328-70875347 None:intergenic 40.0%
GTGAGAGAATAGTATGTGAG+GGG + chr7_1:70875329-70875348 None:intergenic 40.0%
GAGTGAGAGAATAGTATGTG+AGG + chr7_1:70875331-70875350 None:intergenic 40.0%
TCAGAAGAGTCCTCTCTTAA+TGG - chr7_1:70875450-70875469 Msa1035140:three_prime_UTR 40.0%
AGAAGAAGAACTAGCAGCAA+TGG + chr7_1:70875541-70875560 None:intergenic 40.0%
! TCTGGTTCAAAGAAAGGTAG+AGG - chr7_1:70875561-70875580 Msa1035140:CDS 40.0%
GTTCAAAGAAAGGTAGAGGT+GGG - chr7_1:70875565-70875584 Msa1035140:CDS 40.0%
TTCAACATTCTCAACCACCT+AGG - chr7_1:70875592-70875611 Msa1035140:CDS 40.0%
ACCAGAAACAGTAACAGTAG+GGG + chr7_1:70875703-70875722 None:intergenic 40.0%
GACCAGAAACAGTAACAGTA+GGG + chr7_1:70875704-70875723 None:intergenic 40.0%
AGACCAGAAACAGTAACAGT+AGG + chr7_1:70875705-70875724 None:intergenic 40.0%
!! CTGTTTCTGGTCTTCAACAA+AGG - chr7_1:70875712-70875731 Msa1035140:CDS 40.0%
!! GGTTTTGTCAACAATGTAGC+AGG - chr7_1:70875733-70875752 Msa1035140:CDS 40.0%
!! GATTTGGGTTGATTGTGTTC+CGG - chr7_1:70876049-70876068 Msa1035140:intron 40.0%
!!! ATACTTTGGTGTTTTGAGGC+TGG - chr7_1:70876293-70876312 Msa1035140:CDS 40.0%
AGACTCCTACATACCTAAAC+GGG + chr7_1:70876321-70876340 None:intergenic 40.0%
! GGTTTAGGATAATAGGATGG+TGG - chr7_1:70876404-70876423 Msa1035140:intron 40.0%
! ATAATAGGATGGTGGTGATC+AGG - chr7_1:70876412-70876431 Msa1035140:intron 40.0%
! TAATAGGATGGTGGTGATCA+GGG - chr7_1:70876413-70876432 Msa1035140:intron 40.0%
! TTACAGGTGCCACATATACA+AGG + chr7_1:70876541-70876560 None:intergenic 40.0%
CAGGCTGTAGAATAATTGCA+CGG - chr7_1:70876610-70876629 Msa1035140:intron 40.0%
AAATGAACCCAGGGTTCTTA+AGG - chr7_1:70876723-70876742 Msa1035140:intron 40.0%
TCATGCTATAGTGTGGTCAT+TGG - chr7_1:70876799-70876818 Msa1035140:intron 40.0%
GTATGCACACTAACATGAGT+TGG + chr7_1:70876895-70876914 None:intergenic 40.0%
CACAATGAAAGCAAAAGACC+TGG + chr7_1:70876988-70877007 None:intergenic 40.0%
! TCTCTTTTTCCTGACTCAGT+AGG - chr7_1:70877056-70877075 Msa1035140:intron 40.0%
! CTCTTTTTCCTGACTCAGTA+GGG - chr7_1:70877057-70877076 Msa1035140:intron 40.0%
!! GCATGCATGAATTTTAGAGG+TGG - chr7_1:70877109-70877128 Msa1035140:intron 40.0%
AGGTGGACGACTATCATAAT+TGG - chr7_1:70877126-70877145 Msa1035140:intron 40.0%
GTGTAGTTGCAATAGCTTTC+TGG - chr7_1:70877231-70877250 Msa1035140:intron 40.0%
GCTGCAGTTGCTATGTTATT+AGG - chr7_1:70877576-70877595 Msa1035140:intron 40.0%
TCGAAGAAATTCGAGAGTCA+TGG + chr7_1:70877779-70877798 None:intergenic 40.0%
GACTCTCGAATTTCTTCGAT+AGG - chr7_1:70877780-70877799 Msa1035140:intron 40.0%
!! CTCAGCAAGTTGATGAAATC+TGG + chr7_1:70878022-70878041 None:intergenic 40.0%
!! CAACTTGCTGAGTTTGATCA+AGG - chr7_1:70878030-70878049 Msa1035140:intron 40.0%
TTTGCTTCAAACCCGAAACA+TGG - chr7_1:70878329-70878348 Msa1035140:intron 40.0%
AGTTTCTCAGACCATGTTTC+GGG + chr7_1:70878343-70878362 None:intergenic 40.0%
GAGTTTCTCAGACCATGTTT+CGG + chr7_1:70878344-70878363 None:intergenic 40.0%
ATCAAACCACAACAATCGGT+TGG - chr7_1:70878381-70878400 Msa1035140:intron 40.0%
TGCAAGAAAAGGTTGTCAGA+TGG + chr7_1:70878431-70878450 None:intergenic 40.0%
! TCTGACAACCTTTTCTTGCA+AGG - chr7_1:70878431-70878450 Msa1035140:intron 40.0%
! CAACCTTTTCTTGCAAGGTT+CGG - chr7_1:70878436-70878455 Msa1035140:intron 40.0%
ACAGTTTGAATCTGTGACTC+CGG + chr7_1:70878513-70878532 None:intergenic 40.0%
AGATGTAGCATGTTGTGTCA+TGG + chr7_1:70878627-70878646 None:intergenic 40.0%
CAACATGCTACATCTTCTCA+TGG - chr7_1:70878632-70878651 Msa1035140:CDS 40.0%
GGAAAGTGAGAAGTGAACTA+AGG - chr7_1:70878891-70878910 Msa1035140:five_prime_UTR 40.0%
! CTTGATGCTCTTGCTTGTTT+TGG - chr7_1:70878918-70878937 Msa1035140:five_prime_UTR 40.0%
GTTTAAACTGTTAGGCAAGG+TGG - chr7_1:70878944-70878963 Msa1035140:five_prime_UTR 40.0%
TTAAACTGTTAGGCAAGGTG+GGG - chr7_1:70878946-70878965 Msa1035140:five_prime_UTR 40.0%
ACAAACCACAAAGTGAAGCA+AGG + chr7_1:70878976-70878995 None:intergenic 40.0%
GAAGACAAAAGAGGAAGAGG+TGG + chr7_1:70875220-70875239 None:intergenic 45.0%
GTGGAAGACAAAAGAGGAAG+AGG + chr7_1:70875223-70875242 None:intergenic 45.0%
GAGAGAATAGTATGTGAGGG+GGG + chr7_1:70875327-70875346 None:intergenic 45.0%
GGTTGCTAGATTGTGCTCAT+TGG + chr7_1:70875385-70875404 None:intergenic 45.0%
ATCCATTGGTGTGTGAGGTT+TGG + chr7_1:70875412-70875431 None:intergenic 45.0%
GAACTAGCAGCAATGGTAGT+AGG + chr7_1:70875534-70875553 None:intergenic 45.0%
! GCTGCTAGTTCTTCTTCTTC+TGG - chr7_1:70875543-70875562 Msa1035140:CDS 45.0%
GGTTCAAAGAAAGGTAGAGG+TGG - chr7_1:70875564-70875583 Msa1035140:CDS 45.0%
CATCCTTCAACTTGACACCT+AGG + chr7_1:70875612-70875631 None:intergenic 45.0%
TCCCCTACTGTTACTGTTTC+TGG - chr7_1:70875699-70875718 Msa1035140:CDS 45.0%
GACTCCTACATACCTAAACG+GGG + chr7_1:70876320-70876339 None:intergenic 45.0%
! GACGCATGGACTAAGTAATC+AGG - chr7_1:70876591-70876610 Msa1035140:intron 45.0%
GGTTGCATCATGCTATAGTG+TGG - chr7_1:70876792-70876811 Msa1035140:intron 45.0%
TGAAAGCAAAAGACCTGGAC+TGG + chr7_1:70876983-70877002 None:intergenic 45.0%
CTCAGTAGGGTAGTGTTCAA+TGG - chr7_1:70877070-70877089 Msa1035140:intron 45.0%
AGGTTAAGAGAGAGCTTGGT+GGG + chr7_1:70878110-70878129 None:intergenic 45.0%
AGAAACTCACTTCCATCACC+CGG - chr7_1:70878356-70878375 Msa1035140:intron 45.0%
!! CTTTTCTTGCAAGGTTCGGT+GGG - chr7_1:70878440-70878459 Msa1035140:intron 45.0%
GGGACAACCTCGTAATTGTT+TGG + chr7_1:70878677-70878696 None:intergenic 45.0%
TTGAGAAGATTCATAGGCCC+TGG + chr7_1:70878804-70878823 None:intergenic 45.0%
GGGCCTATGAATCTTCTCAA+TGG - chr7_1:70878804-70878823 Msa1035140:five_prime_UTR 45.0%
!! ATGATATAATATAATATTTA+TGG - chr7_1:70877518-70877537 Msa1035140:intron 5.0%
! GGAGTGGTGGTTGTTGTTGT+TGG + chr7_1:70875299-70875318 None:intergenic 50.0%
ATAGTATGTGAGGGGGGTCT+GGG + chr7_1:70875321-70875340 None:intergenic 50.0%
AATAGTATGTGAGGGGGGTC+TGG + chr7_1:70875322-70875341 None:intergenic 50.0%
CATTGGTGTGTGAGGTTTGG+TGG + chr7_1:70875409-70875428 None:intergenic 50.0%
CACCAAACCTCACACACCAA+TGG - chr7_1:70875407-70875426 Msa1035140:three_prime_UTR 50.0%
CCTGAATCCATTGGTGTGTG+AGG + chr7_1:70875417-70875436 None:intergenic 50.0%
! CCTCACACACCAATGGATTC+AGG - chr7_1:70875414-70875433 Msa1035140:three_prime_UTR 50.0%
! CACACACCAATGGATTCAGG+AGG - chr7_1:70875417-70875436 Msa1035140:three_prime_UTR 50.0%
GAGTTGCCTCCTGAATCCAT+TGG + chr7_1:70875426-70875445 None:intergenic 50.0%
CCTTCAACTTGACACCTAGG+TGG + chr7_1:70875609-70875628 None:intergenic 50.0%
!! CCACCTAGGTGTCAAGTTGA+AGG - chr7_1:70875606-70875625 Msa1035140:CDS 50.0%
TGGTCCCCGTTTAGGTATGT+AGG - chr7_1:70876313-70876332 Msa1035140:CDS 50.0%
TGCTAGTGGGAGTTTGAGAG+TGG - chr7_1:70876771-70876790 Msa1035140:intron 50.0%
TGGATAGTGCAATCCAGTCC+AGG - chr7_1:70876967-70876986 Msa1035140:intron 50.0%
GAACACTACCCTACTGAGTC+AGG + chr7_1:70877068-70877087 None:intergenic 50.0%
CTGGTGCTTGTTCCAACTGT+TGG - chr7_1:70877250-70877269 Msa1035140:intron 50.0%
!! TGCATTGATTGGGAGAGACC+AGG - chr7_1:70877728-70877747 Msa1035140:intron 50.0%
TATGACCAGCTAGTCGTCTG+CGG + chr7_1:70878068-70878087 None:intergenic 50.0%
! GTTAAGAGAGAGCTTGGTGG+GGG + chr7_1:70878108-70878127 None:intergenic 50.0%
! GGTTAAGAGAGAGCTTGGTG+GGG + chr7_1:70878109-70878128 None:intergenic 50.0%
GAGGTTAAGAGAGAGCTTGG+TGG + chr7_1:70878111-70878130 None:intergenic 50.0%
CGTGAGGTTAAGAGAGAGCT+TGG + chr7_1:70878114-70878133 None:intergenic 50.0%
AGAAAGTCTGGCAAAGCGTG+AGG + chr7_1:70878130-70878149 None:intergenic 50.0%
TCAACAGGTAACAGCGACAG+AGG - chr7_1:70878287-70878306 Msa1035140:intron 50.0%
CAGAGGTGGCAGCTTCTTAA+TGG - chr7_1:70878304-70878323 Msa1035140:intron 50.0%
! GTGGTTTGATTTCCGGGTGA+TGG + chr7_1:70878371-70878390 None:intergenic 50.0%
CCACCGAACCTTGCAAGAAA+AGG + chr7_1:70878442-70878461 None:intergenic 50.0%
! CCTTTTCTTGCAAGGTTCGG+TGG - chr7_1:70878439-70878458 Msa1035140:intron 50.0%
ACTCCGGTGTAAGTTTCCTC+GGG + chr7_1:70878497-70878516 None:intergenic 50.0%
GACTCCGGTGTAAGTTTCCT+CGG + chr7_1:70878498-70878517 None:intergenic 50.0%
TACGAGGTTGTCCCTGATCT+TGG - chr7_1:70878683-70878702 Msa1035140:exon 50.0%
AGGTTGTCCCTGATCTTGGT+CGG - chr7_1:70878687-70878706 Msa1035140:exon 50.0%
GATCAAGCTCACCAGAGAGT+TGG + chr7_1:70878739-70878758 None:intergenic 50.0%
!! GCAGGGAAGGAGGCATTATA+TGG - chr7_1:70878766-70878785 Msa1035140:five_prime_UTR 50.0%
!! GCTAGCCTTGCTTCACTTTG+TGG - chr7_1:70878968-70878987 Msa1035140:five_prime_UTR 50.0%
TAGTATGTGAGGGGGGTCTG+GGG + chr7_1:70875320-70875339 None:intergenic 55.0%
!! TGGTGTGTGAGGTTTGGTGG+TGG + chr7_1:70875406-70875425 None:intergenic 55.0%
! TTTGAGGCTGGTCCCCGTTT+AGG - chr7_1:70876305-70876324 Msa1035140:CDS 55.0%
CTGCAGGCCTTAAGAACCCT+GGG + chr7_1:70876733-70876752 None:intergenic 55.0%
ACTGCAGGCCTTAAGAACCC+TGG + chr7_1:70876734-70876753 None:intergenic 55.0%
! CTGGTCATAATGAGCGTCGC+AGG - chr7_1:70878079-70878098 Msa1035140:intron 55.0%
ACAGGTAACAGCGACAGAGG+TGG - chr7_1:70878290-70878309 Msa1035140:intron 55.0%
CCAAGGCCAACCGATTGTTG+TGG + chr7_1:70878390-70878409 None:intergenic 55.0%
!! CCACAACAATCGGTTGGCCT+TGG - chr7_1:70878387-70878406 Msa1035140:intron 55.0%
!! AACAATCGGTTGGCCTTGGC+CGG - chr7_1:70878391-70878410 Msa1035140:intron 55.0%
!! TTCTTGCAAGGTTCGGTGGG+TGG - chr7_1:70878443-70878462 Msa1035140:intron 55.0%
!! TCTTGCAAGGTTCGGTGGGT+GGG - chr7_1:70878444-70878463 Msa1035140:intron 55.0%
CCTCCCGAGGAAACTTACAC+CGG - chr7_1:70878491-70878510 Msa1035140:intron 55.0%
GGTTGTCCCTGATCTTGGTC+GGG - chr7_1:70878688-70878707 Msa1035140:exon 55.0%
GTTGTCCCTGATCTTGGTCG+GGG - chr7_1:70878689-70878708 Msa1035140:exon 55.0%
TGTGACCCCGACCAAGATCA+GGG + chr7_1:70878697-70878716 None:intergenic 55.0%
ATGTGACCCCGACCAAGATC+AGG + chr7_1:70878698-70878717 None:intergenic 55.0%
GGTCACATTTCGCAGCCTCT+TGG - chr7_1:70878710-70878729 Msa1035140:five_prime_UTR 55.0%
CCAGAGAGTTGGCTACCAAG+AGG + chr7_1:70878728-70878747 None:intergenic 55.0%
! CCTCTTGGTAGCCAACTCTC+TGG - chr7_1:70878725-70878744 Msa1035140:five_prime_UTR 55.0%
TGAGCTTGATCTGTCGCAGC+AGG - chr7_1:70878748-70878767 Msa1035140:five_prime_UTR 55.0%
GAGCTTGATCTGTCGCAGCA+GGG - chr7_1:70878749-70878768 Msa1035140:five_prime_UTR 55.0%
TTGATCTGTCGCAGCAGGGA+AGG - chr7_1:70878753-70878772 Msa1035140:five_prime_UTR 55.0%
AGTTGCCGCAGACGACTAGC+TGG - chr7_1:70878060-70878079 Msa1035140:intron 60.0%
!! ACAATCGGTTGGCCTTGGCC+GGG - chr7_1:70878392-70878411 Msa1035140:intron 60.0%
AGTTTCCTCGGGAGGATGCC+TGG + chr7_1:70878486-70878505 None:intergenic 60.0%
CCGGTGTAAGTTTCCTCGGG+AGG + chr7_1:70878494-70878513 None:intergenic 60.0%
ATCTGTCGCAGCAGGGAAGG+AGG - chr7_1:70878756-70878775 Msa1035140:five_prime_UTR 60.0%
!! CAATCGGTTGGCCTTGGCCG+GGG - chr7_1:70878393-70878412 Msa1035140:intron 65.0%
!! TTGGCCTTGGCCGGGGAACA+CGG - chr7_1:70878400-70878419 Msa1035140:intron 65.0%
GATGGCGACTCCGTGTTCCC+CGG + chr7_1:70878413-70878432 None:intergenic 65.0%
GTGGGTGGGACAAGCTTCCC+TGG - chr7_1:70878458-70878477 Msa1035140:intron 65.0%
GGACAAGCTTCCCTGGTGCC+AGG - chr7_1:70878465-70878484 Msa1035140:intron 65.0%
TGTGAGGGGGGTCTGGGGAG+TGG + chr7_1:70875315-70875334 None:intergenic 70.0%
GACTCCGTGTTCCCCGGCCA+AGG + chr7_1:70878407-70878426 None:intergenic 70.0%
CGGGAGGATGCCTGGCACCA+GGG + chr7_1:70878478-70878497 None:intergenic 70.0%
TCGGGAGGATGCCTGGCACC+AGG + chr7_1:70878479-70878498 None:intergenic 70.0%
! TGGTGCCAGGCATCCTCCCG+AGG - chr7_1:70878478-70878497 Msa1035140:intron 70.0%
GAGGGGGGTCTGGGGAGTGG+TGG + chr7_1:70875312-70875331 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 70875196 70879147 70875196 ID=Msa1035140;Name=Msa1035140
chr7_1 mRNA 70875196 70879147 70875196 ID=Msa1035140-mRNA-1;Parent=Msa1035140;Name=Msa1035140-mRNA-1;_AED=0.18;_eAED=0.18;_QI=453|0.33|0.5|1|0.33|0.5|4|312|280
chr7_1 exon 70875196 70876049 70875196 ID=Msa1035140-mRNA-1:exon:17050;Parent=Msa1035140-mRNA-1
chr7_1 exon 70876181 70876367 70876181 ID=Msa1035140-mRNA-1:exon:17049;Parent=Msa1035140-mRNA-1
chr7_1 exon 70877163 70877170 70877163 ID=Msa1035140-mRNA-1:exon:17048;Parent=Msa1035140-mRNA-1
chr7_1 exon 70878589 70879147 70878589 ID=Msa1035140-mRNA-1:exon:17047;Parent=Msa1035140-mRNA-1
chr7_1 five_prime_UTR 70878695 70879147 70878695 ID=Msa1035140-mRNA-1:five_prime_utr;Parent=Msa1035140-mRNA-1
chr7_1 CDS 70878589 70878694 70878589 ID=Msa1035140-mRNA-1:cds;Parent=Msa1035140-mRNA-1
chr7_1 CDS 70877163 70877170 70877163 ID=Msa1035140-mRNA-1:cds;Parent=Msa1035140-mRNA-1
chr7_1 CDS 70876181 70876367 70876181 ID=Msa1035140-mRNA-1:cds;Parent=Msa1035140-mRNA-1
chr7_1 CDS 70875508 70876049 70875508 ID=Msa1035140-mRNA-1:cds;Parent=Msa1035140-mRNA-1
chr7_1 three_prime_UTR 70875196 70875507 70875196 ID=Msa1035140-mRNA-1:three_prime_utr;Parent=Msa1035140-mRNA-1
Gene Sequence

>Msa1035140

ATGCTAAAGCTTACTATTCTAGACACAAAGTTTGTAGCATGCACTCTAAGTCCCCTACTGTTACTGTTTCTGGTCTTCAACAAAGGTTTTGTCAACAATGTAGCAGAGAGCATGGGTTATATTTTTGAAATACTAATATCATTTTGCATAGCCTTTCCCAGATTTCATCAACTTGCTGAGTTTGATCAAGGAAAAAGAAGTTGCCGCAGACGACTAGCTGGTCATAATGAGCGTCGCAGGAAGCCCCCACCAAGCTCTCTCTTAACCTCACGCTTTGCCAGACTTTCTTCATCTGTTTTTGGTAACAGCGACAGAGGTGGCAGCTTCTTAATGGAATTTGCTTCAAACCCGAAACATGGTCTGAGAAACTCACTTCCATCACCCGGAAATCAAACCACAACAATCGGTTGGCCTTGGCCGGGGAACACGGAGTCGCCATCTGACAACCTTTTCTTGCAAGGTTCGGTGGGTGGGACAAGCTTCCCTGGTGCCAGGCATCCTCCCGAGGAAACTTACACCGGAGTCACAGATTCAAACTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGTTCTCGAAACACAGAACCAAGTCCTGAATTGAATAACATGCTGAATTTCAATGGGACATCCATGACACAACATGCTACATCTTCTCATGGTGTAGCCATGCATCAAATTCCAAACAATTACGAGGTTGTCCCTGATCTTGGTCGGGGTCACATTTCGCAGCCTCTTGGTAGCCAACTCTCTGGTGAGCTTGATCTGTCGCAGCAGGGAAGGAGGCATTATATGGATGTAGAACATTCCAGGGCCTATGAATCTTCTCAATGGTCACTGTAA
Protein sequence

>Msa1035140

MLKLTILDTKFVACTLSPLLLLFLVFNKGFVNNVAESMGYIFEILISFCIAFPRFHQLAEFDQGKRSCRRRLAGHNERRRKPPPSSLLTSRFARLSSSVFGNSDRGGSFLMEFASNPKHGLRNSLPSPGNQTTTIGWPWPGNTESPSDNLFLQGSVGGTSFPGARHPPEETYTGVTDSNCALSLLSNQTWGSRNTEPSPELNNMLNFNGTSMTQHATSSHGVAMHQIPNNYEVVPDLGRGHISQPLGSQLSGELDLSQQGRRHYMDVEHSRAYESSQWSL*