Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1035810 | KEH23781.1 | 81.843 | 369 | 61 | 2 | 1 | 366 | 1 | 366 | 0.0 | 631 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1035810 | sp|F4IXE7|IDM1_ARATH | 36.859 | 312 | 174 | 6 | 11 | 304 | 723 | 1029 | 2.84e-58 | 207 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1035810 | A0A072U345 | 81.843 | 369 | 61 | 2 | 1 | 366 | 1 | 366 | 0.0 | 631 |
Gene ID | Type | Classification |
---|---|---|
Msa1035810 | TR | PHD |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1035810 | MtrunA17_Chr7g0259981 | 80.000 | 315 | 51 | 2 | 1 | 312 | 1 | 306 | 0.0 | 533 |
Msa1035810 | MtrunA17_Chr1g0185491 | 46.429 | 336 | 157 | 4 | 10 | 324 | 913 | 1246 | 6.48e-99 | 321 |
Msa1035810 | MtrunA17_Chr1g0205451 | 40.065 | 307 | 161 | 4 | 11 | 296 | 706 | 1010 | 5.51e-73 | 246 |
Msa1035810 | MtrunA17_Chr2g0316251 | 36.893 | 309 | 174 | 5 | 8 | 298 | 861 | 1166 | 2.25e-61 | 213 |
Msa1035810 | MtrunA17_Chr5g0430361 | 34.985 | 323 | 183 | 8 | 8 | 309 | 752 | 1068 | 5.47e-58 | 203 |
Msa1035810 | MtrunA17_Chr3g0105291 | 32.132 | 333 | 194 | 8 | 13 | 323 | 707 | 1029 | 1.87e-55 | 196 |
Msa1035810 | MtrunA17_Chr5g0407211 | 33.688 | 282 | 162 | 6 | 13 | 278 | 125 | 397 | 1.79e-48 | 169 |
Msa1035810 | MtrunA17_Chr5g0407251 | 32.979 | 282 | 164 | 6 | 13 | 278 | 125 | 397 | 2.80e-47 | 166 |
Msa1035810 | MtrunA17_Chr7g0270101 | 32.313 | 294 | 162 | 7 | 13 | 278 | 481 | 765 | 1.66e-42 | 157 |
Msa1035810 | MtrunA17_Chr3g0134811 | 30.128 | 312 | 191 | 6 | 13 | 304 | 493 | 797 | 8.00e-42 | 155 |
Msa1035810 | MtrunA17_Chr3g0134821 | 30.671 | 313 | 170 | 7 | 13 | 295 | 526 | 821 | 3.08e-40 | 151 |
Msa1035810 | MtrunA17_Chr7g0265211 | 25.683 | 366 | 186 | 11 | 13 | 298 | 588 | 947 | 3.05e-28 | 116 |
Msa1035810 | MtrunA17_Chr1g0182481 | 26.836 | 354 | 180 | 13 | 13 | 299 | 553 | 894 | 2.23e-27 | 114 |
Msa1035810 | MtrunA17_Chr3g0134851 | 29.433 | 282 | 139 | 9 | 13 | 278 | 205 | 442 | 3.58e-25 | 106 |
Msa1035810 | MtrunA17_Chr1g0179841 | 24.863 | 366 | 193 | 11 | 13 | 300 | 443 | 804 | 1.49e-24 | 105 |
Msa1035810 | MtrunA17_Chr4g0028111 | 22.543 | 346 | 173 | 11 | 13 | 273 | 227 | 562 | 9.58e-19 | 87.8 |
Msa1035810 | MtrunA17_Chr4g0027811 | 23.209 | 349 | 176 | 11 | 6 | 298 | 266 | 578 | 4.39e-18 | 85.9 |
Msa1035810 | MtrunA17_Chr4g0025251 | 23.985 | 271 | 157 | 9 | 68 | 298 | 440 | 701 | 5.89e-15 | 76.3 |
Msa1035810 | MtrunA17_Chr2g0320451 | 29.221 | 154 | 100 | 4 | 148 | 298 | 876 | 1023 | 4.16e-14 | 73.9 |
Msa1035810 | MtrunA17_Chr2g0320451 | 47.917 | 48 | 25 | 0 | 13 | 60 | 557 | 604 | 1.93e-11 | 65.9 |
Msa1035810 | MtrunA17_Chr4g0038871 | 55.102 | 49 | 20 | 1 | 11 | 57 | 696 | 744 | 8.39e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1035810 | AT5G36740.5 | 41.290 | 310 | 163 | 4 | 11 | 303 | 647 | 954 | 2.03e-80 | 267 |
Msa1035810 | AT5G36740.1 | 41.290 | 310 | 163 | 4 | 11 | 303 | 647 | 954 | 2.03e-80 | 267 |
Msa1035810 | AT5G36740.4 | 39.688 | 320 | 164 | 5 | 11 | 303 | 494 | 811 | 1.51e-76 | 255 |
Msa1035810 | AT1G05380.3 | 39.228 | 311 | 165 | 5 | 16 | 308 | 627 | 931 | 1.14e-72 | 245 |
Msa1035810 | AT1G05380.1 | 39.228 | 311 | 165 | 5 | 16 | 308 | 627 | 931 | 1.14e-72 | 245 |
Msa1035810 | AT1G05380.2 | 39.228 | 311 | 165 | 5 | 16 | 308 | 627 | 931 | 1.14e-72 | 245 |
Msa1035810 | AT4G14920.2 | 38.387 | 310 | 167 | 7 | 8 | 298 | 679 | 983 | 1.19e-70 | 239 |
Msa1035810 | AT4G14920.1 | 38.387 | 310 | 167 | 7 | 8 | 298 | 679 | 983 | 1.19e-70 | 239 |
Msa1035810 | AT4G14920.3 | 38.387 | 310 | 167 | 7 | 8 | 298 | 679 | 983 | 1.20e-70 | 239 |
Msa1035810 | AT5G36670.4 | 38.037 | 326 | 165 | 6 | 11 | 303 | 647 | 968 | 2.03e-70 | 239 |
Msa1035810 | AT5G36670.5 | 38.037 | 326 | 165 | 6 | 11 | 303 | 647 | 968 | 2.03e-70 | 239 |
Msa1035810 | AT5G36670.3 | 36.607 | 336 | 166 | 7 | 11 | 303 | 494 | 825 | 2.74e-66 | 226 |
Msa1035810 | AT5G36670.1 | 36.607 | 336 | 166 | 7 | 11 | 303 | 647 | 978 | 3.72e-66 | 227 |
Msa1035810 | AT5G36670.2 | 42.570 | 249 | 124 | 4 | 11 | 242 | 647 | 893 | 1.28e-64 | 221 |
Msa1035810 | AT5G36740.2 | 42.570 | 249 | 124 | 4 | 11 | 242 | 647 | 893 | 1.28e-64 | 221 |
Msa1035810 | AT5G36740.3 | 42.570 | 249 | 124 | 4 | 11 | 242 | 647 | 893 | 1.28e-64 | 221 |
Msa1035810 | AT3G14980.6 | 36.859 | 312 | 174 | 6 | 11 | 304 | 723 | 1029 | 2.89e-59 | 207 |
Msa1035810 | AT3G14980.1 | 36.859 | 312 | 174 | 6 | 11 | 304 | 723 | 1029 | 2.89e-59 | 207 |
Msa1035810 | AT3G14980.2 | 36.859 | 312 | 174 | 6 | 11 | 304 | 723 | 1029 | 2.89e-59 | 207 |
Msa1035810 | AT3G14980.3 | 36.859 | 312 | 174 | 6 | 11 | 304 | 723 | 1029 | 3.56e-59 | 206 |
Msa1035810 | AT3G14980.5 | 36.859 | 312 | 174 | 6 | 11 | 304 | 678 | 984 | 3.62e-59 | 207 |
Msa1035810 | AT5G58610.6 | 38.127 | 299 | 161 | 8 | 2 | 293 | 682 | 963 | 3.29e-54 | 192 |
Msa1035810 | AT5G58610.1 | 38.127 | 299 | 161 | 8 | 2 | 293 | 682 | 963 | 4.13e-54 | 192 |
Msa1035810 | AT5G58610.4 | 35.873 | 315 | 172 | 9 | 2 | 293 | 460 | 767 | 8.61e-54 | 190 |
Msa1035810 | AT5G58610.3 | 35.873 | 315 | 172 | 9 | 2 | 293 | 691 | 998 | 3.11e-53 | 189 |
Msa1035810 | AT5G58610.5 | 35.873 | 315 | 172 | 9 | 2 | 293 | 682 | 989 | 3.60e-53 | 189 |
Msa1035810 | AT5G58610.8 | 35.873 | 315 | 172 | 9 | 2 | 293 | 691 | 998 | 3.88e-53 | 189 |
Msa1035810 | AT5G58610.2 | 35.873 | 315 | 172 | 9 | 2 | 293 | 691 | 998 | 3.88e-53 | 189 |
Msa1035810 | AT5G58610.7 | 35.873 | 315 | 172 | 9 | 2 | 293 | 682 | 989 | 4.55e-53 | 189 |
Msa1035810 | AT5G58610.10 | 33.955 | 268 | 152 | 7 | 2 | 246 | 691 | 956 | 4.06e-42 | 157 |
Msa1035810 | AT5G58610.9 | 33.955 | 268 | 152 | 7 | 2 | 246 | 682 | 947 | 5.21e-42 | 157 |
Msa1035810 | AT5G63900.1 | 33.016 | 315 | 184 | 12 | 11 | 309 | 253 | 556 | 5.72e-39 | 146 |
Msa1035810 | AT2G36720.1 | 26.203 | 374 | 194 | 10 | 13 | 308 | 614 | 983 | 1.07e-35 | 139 |
Msa1035810 | AT2G36720.2 | 26.203 | 374 | 194 | 10 | 13 | 308 | 614 | 983 | 1.07e-35 | 139 |
Msa1035810 | AT2G37520.1 | 27.809 | 356 | 184 | 11 | 13 | 300 | 467 | 817 | 5.24e-34 | 133 |
Msa1035810 | AT3G14980.4 | 36.406 | 217 | 115 | 6 | 11 | 209 | 723 | 934 | 1.76e-33 | 132 |
Msa1035810 | AT2G27980.1 | 26.260 | 377 | 188 | 14 | 6 | 298 | 687 | 1057 | 1.85e-31 | 126 |
Msa1035810 | AT3G53680.1 | 26.519 | 362 | 183 | 13 | 13 | 302 | 485 | 835 | 1.54e-29 | 120 |
Msa1035810 | AT3G53680.2 | 26.519 | 362 | 183 | 13 | 13 | 302 | 487 | 837 | 1.62e-29 | 120 |
Msa1035810 | AT5G58610.11 | 30.870 | 230 | 134 | 7 | 2 | 208 | 682 | 909 | 1.71e-27 | 114 |
Find 68 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACACTTGGACTTCCTCTTT+TGG | 0.216281 | 7_1:+71801977 | Msa1035810:CDS |
CCAATGGCTACTTAGAATTC+TGG | 0.217920 | 7_1:-71800296 | None:intergenic |
ATGGCAGAGATGCCATTTAT+TGG | 0.258182 | 7_1:+71801603 | Msa1035810:CDS |
CTAACTCGTGTTCCAATAAA+TGG | 0.259990 | 7_1:-71801615 | None:intergenic |
TTGGAACACGAGTTAGGTTT+AGG | 0.320138 | 7_1:+71801622 | Msa1035810:CDS |
AAACCCATTACTTTGGATCT+TGG | 0.343252 | 7_1:+71800250 | Msa1035810:CDS |
AATTGGTGAAATAGGATTCA+TGG | 0.360966 | 7_1:+71801573 | Msa1035810:intron |
CACCGCATGCATCCTCATTA+AGG | 0.362137 | 7_1:-71798750 | None:intergenic |
TTTACTGTATTTCTAGAGAA+AGG | 0.371214 | 7_1:+71801435 | Msa1035810:CDS |
GGAAGTGAAAATCCCGCTAT+TGG | 0.378386 | 7_1:+71799420 | Msa1035810:CDS |
CATTTATTGGAACACGAGTT+AGG | 0.385764 | 7_1:+71801616 | Msa1035810:CDS |
ATTGTCAGTGGAAGAACTTC+AGG | 0.387079 | 7_1:+71802453 | Msa1035810:CDS |
CAATGGCTACTTAGAATTCT+GGG | 0.405998 | 7_1:-71800295 | None:intergenic |
CGAGCTCCTTGTAATTCATA+TGG | 0.411495 | 7_1:-71802495 | None:intergenic |
CGCTACAAGTGTTACACACT+TGG | 0.417196 | 7_1:+71801963 | Msa1035810:CDS |
TTACTGTATTTCTAGAGAAA+GGG | 0.425474 | 7_1:+71801436 | Msa1035810:CDS |
CCTCCAAGATCCAAAGTAAT+GGG | 0.432064 | 7_1:-71800253 | None:intergenic |
AGAGAAAGTTTATCAACAAT+CGG | 0.432642 | 7_1:-71802547 | None:intergenic |
CCCATTACTTTGGATCTTGG+AGG | 0.440114 | 7_1:+71800253 | Msa1035810:CDS |
AGGCACAAACTTTAATATTG+AGG | 0.444068 | 7_1:-71798837 | None:intergenic |
AGGAGCTCCCAGCAGGTGAC+TGG | 0.452037 | 7_1:+71799352 | Msa1035810:intron |
TCCTTGCAGGAGCTCCCAGC+AGG | 0.462436 | 7_1:+71799345 | Msa1035810:intron |
TAGGATTCATGGACATCAAA+TGG | 0.466229 | 7_1:+71801584 | Msa1035810:intron |
CAATCTGTGTTGCTACTCTC+AGG | 0.469065 | 7_1:+71801466 | Msa1035810:CDS |
GGATCTTGGAGGTGAGAAGA+TGG | 0.471084 | 7_1:+71800264 | Msa1035810:CDS |
CAAGACTCAGAAAGCTATCA+AGG | 0.471221 | 7_1:+71802404 | Msa1035810:CDS |
ATGCAGTGCCAGTCACCTGC+TGG | 0.478068 | 7_1:-71799360 | None:intergenic |
CAAAATCTCACTTTCAATCA+AGG | 0.485189 | 7_1:+71802112 | Msa1035810:CDS |
GTTTGAACTCACCGACTCAA+TGG | 0.485586 | 7_1:-71801676 | None:intergenic |
TCCCGTGCTGTTGATTATGC+CGG | 0.486765 | 7_1:+71801408 | Msa1035810:CDS |
TTTGCGTAGATTACATGAAG+TGG | 0.508611 | 7_1:+71800183 | Msa1035810:CDS |
CAACTTTGATGAAATACTGC+TGG | 0.514841 | 7_1:-71798814 | None:intergenic |
ACCTCCAAGATCCAAAGTAA+TGG | 0.516234 | 7_1:-71800254 | None:intergenic |
CGAGTTAGGTTTAGGAAACA+AGG | 0.521835 | 7_1:+71801630 | Msa1035810:CDS |
AGGTCTTTAAACACTCTTTG+AGG | 0.524105 | 7_1:-71798730 | None:intergenic |
ACATGAAGTGGAAAACAAGA+AGG | 0.524527 | 7_1:+71800195 | Msa1035810:CDS |
AATAGATATGACATTGGAGA+TGG | 0.525905 | 7_1:+71800145 | Msa1035810:CDS |
CCAGAATTCTAAGTAGCCAT+TGG | 0.533832 | 7_1:+71800296 | Msa1035810:CDS |
GAGAAAGTTTATCAACAATC+GGG | 0.534292 | 7_1:-71802546 | None:intergenic |
AGCTTTCTCAAATCCAAAAG+AGG | 0.538189 | 7_1:-71801990 | None:intergenic |
AGAGGTTTGAAATGCTTCTA+CGG | 0.542161 | 7_1:+71800122 | Msa1035810:CDS |
CTATATGAATGTGGAGATGC+TGG | 0.542228 | 7_1:+71801928 | Msa1035810:CDS |
TACTGTATTTCTAGAGAAAG+GGG | 0.544754 | 7_1:+71801437 | Msa1035810:CDS |
ACGATTGAACTCATCACCGT+TGG | 0.545711 | 7_1:-71799767 | None:intergenic |
TTACAAGGAGCTCGTGAGAG+AGG | 0.547515 | 7_1:+71802504 | Msa1035810:CDS |
TACAAGGAGCTCGTGAGAGA+GGG | 0.549642 | 7_1:+71802505 | Msa1035810:CDS |
AGTGTTTAAAGACCTTAATG+AGG | 0.560861 | 7_1:+71798738 | Msa1035810:CDS |
GCATGCGGTGTTTGTAAAGA+CGG | 0.564702 | 7_1:+71798763 | Msa1035810:CDS |
TGTAACACTTGTAGCGCTGA+TGG | 0.581027 | 7_1:-71801956 | None:intergenic |
CTGAAGACACATCCAATAGC+GGG | 0.584552 | 7_1:-71799432 | None:intergenic |
CAATGGCATTGAAAAGTCTA+CGG | 0.587830 | 7_1:-71801659 | None:intergenic |
TGCAGTGCCAGTCACCTGCT+GGG | 0.589071 | 7_1:-71799359 | None:intergenic |
TCCGGCATAATCAACAGCAC+GGG | 0.592499 | 7_1:-71801409 | None:intergenic |
ATCCGGCATAATCAACAGCA+CGG | 0.595394 | 7_1:-71801410 | None:intergenic |
TTCAATCGTGAAAAGTTCTG+TGG | 0.597157 | 7_1:+71799781 | Msa1035810:CDS |
GGCATTAAGCTATATGAATG+TGG | 0.599720 | 7_1:+71801919 | Msa1035810:intron |
AGAGAGTCTTGTATTGTCAG+TGG | 0.611720 | 7_1:+71802441 | Msa1035810:CDS |
CATGAAGTGGAAAACAAGAA+GGG | 0.614500 | 7_1:+71800196 | Msa1035810:CDS |
CTACGGAATAGATATGACAT+TGG | 0.617609 | 7_1:+71800139 | Msa1035810:CDS |
AGTTCTCCATATGAATTACA+AGG | 0.626343 | 7_1:+71802489 | Msa1035810:CDS |
AATGGCTACTTAGAATTCTG+GGG | 0.631109 | 7_1:-71800294 | None:intergenic |
TGTGGTGCAATTCTATGGAG+TGG | 0.632201 | 7_1:+71802048 | Msa1035810:CDS |
TGTGTTTCCAGATACATCAG+AGG | 0.640085 | 7_1:+71800104 | Msa1035810:intron |
TGCGGTGTTTGTAAAGACGG+AGG | 0.684277 | 7_1:+71798766 | Msa1035810:CDS |
GTCAATTGTGTTGATGCCAA+CGG | 0.685380 | 7_1:+71799751 | Msa1035810:CDS |
ACTGAAGACACATCCAATAG+CGG | 0.687331 | 7_1:-71799433 | None:intergenic |
GACCTTAATGAGGATGCATG+CGG | 0.693617 | 7_1:+71798748 | Msa1035810:CDS |
AGAAAGCTATCAAGGAAGAG+CGG | 0.699589 | 7_1:+71802412 | Msa1035810:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTAATTTTTATTTAATTT+AGG | + | chr7_1:71801735-71801754 | Msa1035810:intron | 0.0% |
!!! | TTTAATTTTTATTTAATTTA+GGG | + | chr7_1:71801736-71801755 | Msa1035810:intron | 0.0% |
!! | GTATTAATTAATTTATCATT+AGG | - | chr7_1:71799162-71799181 | None:intergenic | 10.0% |
!!! | AAACATATAATTTTTGAAAT+AGG | - | chr7_1:71800515-71800534 | None:intergenic | 10.0% |
!! | TAAAGTCTATTTAATTAAAT+AGG | - | chr7_1:71800853-71800872 | None:intergenic | 10.0% |
!! | TTATCTAATAAATTAGTTAT+CGG | - | chr7_1:71801148-71801167 | None:intergenic | 10.0% |
!! | AAAAATAAATCAATACAAAC+AGG | + | chr7_1:71799059-71799078 | Msa1035810:intron | 15.0% |
!! | AGTTAAATTATTTCAATATG+TGG | - | chr7_1:71799280-71799299 | None:intergenic | 15.0% |
!!! | AAGTTTTGTTTATTTTTGAT+GGG | - | chr7_1:71799573-71799592 | None:intergenic | 15.0% |
!!! | AAAGTTTTGTTTATTTTTGA+TGG | - | chr7_1:71799574-71799593 | None:intergenic | 15.0% |
!! | AATATAGTTATAAAAAAGAG+TGG | - | chr7_1:71800327-71800346 | None:intergenic | 15.0% |
!! | ATATTCAACAATATCAATAA+TGG | + | chr7_1:71800743-71800762 | Msa1035810:intron | 15.0% |
!!! | AGATATTTTGAATAAGTTTA+TGG | + | chr7_1:71801169-71801188 | Msa1035810:intron | 15.0% |
!! | TATATTTAGAAACTTCTTAA+TGG | - | chr7_1:71801195-71801214 | None:intergenic | 15.0% |
!! | TGCTGTAAAAAAAATTTAAA+TGG | - | chr7_1:71801221-71801240 | None:intergenic | 15.0% |
!!! | TGTTGTAGATATTTTTTTAT+TGG | + | chr7_1:71801352-71801371 | Msa1035810:intron | 15.0% |
!! | TAATTATGGAGTTTATTAAT+TGG | + | chr7_1:71801556-71801575 | Msa1035810:intron | 15.0% |
!!! | TTTTTTTAAGTAGAGTAAAA+AGG | - | chr7_1:71801857-71801876 | None:intergenic | 15.0% |
!!! | TATACTTTTCTATTTTCTTT+TGG | - | chr7_1:71802081-71802100 | None:intergenic | 15.0% |
!!! | AAGTTTATTTTCATTGTTTG+AGG | + | chr7_1:71798909-71798928 | Msa1035810:intron | 20.0% |
!! | AAAAAATAAACCAATCCAAA+TGG | - | chr7_1:71798935-71798954 | None:intergenic | 20.0% |
!! | TCATTATATGTTAATGACAT+TGG | + | chr7_1:71799133-71799152 | Msa1035810:intron | 20.0% |
!! | TATTCAGTTAATTAATGAAG+AGG | - | chr7_1:71799522-71799541 | None:intergenic | 20.0% |
!!! | AGTTTTGTTTATTTTTGATG+GGG | - | chr7_1:71799572-71799591 | None:intergenic | 20.0% |
!! | AAAAATTATATGTTTGAGTC+TGG | + | chr7_1:71800520-71800539 | Msa1035810:intron | 20.0% |
!! | TTATTTAGTAGCTGATATAT+TGG | - | chr7_1:71800688-71800707 | None:intergenic | 20.0% |
!! | TAAATAACCAAATCATAAGA+AGG | + | chr7_1:71800701-71800720 | Msa1035810:intron | 20.0% |
!! | AGTCTATTCAAAATCTAATT+CGG | - | chr7_1:71800916-71800935 | None:intergenic | 20.0% |
!! | AAAGATATGATTATGAGAAA+GGG | - | chr7_1:71800979-71800998 | None:intergenic | 20.0% |
!! | AAAAGATATGATTATGAGAA+AGG | - | chr7_1:71800980-71800999 | None:intergenic | 20.0% |
!! | TAAAAACACAAATAAGATGA+TGG | - | chr7_1:71801088-71801107 | None:intergenic | 20.0% |
!! | TAGAAATACAGTAAAAAATC+CGG | - | chr7_1:71801430-71801449 | None:intergenic | 20.0% |
!! | GTCGAAAAACATATTAATTA+TGG | + | chr7_1:71801542-71801561 | Msa1035810:intron | 20.0% |
!! | AGTTTATTAATTGGTGAAAT+AGG | + | chr7_1:71801565-71801584 | Msa1035810:intron | 20.0% |
!! | AATGCTAAGAAACTAAATAT+AGG | + | chr7_1:71801760-71801779 | Msa1035810:intron | 20.0% |
!!! | TATACATGTACATTTTTTCT+AGG | + | chr7_1:71802158-71802177 | Msa1035810:intron | 20.0% |
!! | TAACGATCAAAGTTATTTAA+AGG | - | chr7_1:71802314-71802333 | None:intergenic | 20.0% |
!!! | CTCTAAAATGATAAGATCAA+AGG | - | chr7_1:71799085-71799104 | None:intergenic | 25.0% |
! | TACTTTATGTTTGTGTATAG+AGG | + | chr7_1:71799967-71799986 | Msa1035810:intron | 25.0% |
! | TCTTCTCTAAATTGAGAAAA+AGG | - | chr7_1:71800024-71800043 | None:intergenic | 25.0% |
! | GAAATATCCATCTACATTAT+CGG | + | chr7_1:71800382-71800401 | Msa1035810:intron | 25.0% |
!!! | CATGATGCTCTAAAAAAAAT+TGG | + | chr7_1:71800414-71800433 | Msa1035810:intron | 25.0% |
!! | TCATACGATTTTTAATAGCA+GGG | - | chr7_1:71800652-71800671 | None:intergenic | 25.0% |
!! | TTCATACGATTTTTAATAGC+AGG | - | chr7_1:71800653-71800672 | None:intergenic | 25.0% |
! | AAGATATGATTATGAGAAAG+GGG | - | chr7_1:71800978-71800997 | None:intergenic | 25.0% |
! | AAGCTCAAATCAATACTTAA+AGG | + | chr7_1:71801010-71801029 | Msa1035810:intron | 25.0% |
! | TAATTAACACGTAAGAAAAC+TGG | - | chr7_1:71801112-71801131 | None:intergenic | 25.0% |
! | TATGTTCTTATTATCTTGTC+AGG | + | chr7_1:71801379-71801398 | Msa1035810:intron | 25.0% |
!!! | TTTACTGTATTTCTAGAGAA+AGG | + | chr7_1:71801435-71801454 | Msa1035810:CDS | 25.0% |
!!! | TTACTGTATTTCTAGAGAAA+GGG | + | chr7_1:71801436-71801455 | Msa1035810:CDS | 25.0% |
! | AGAGACAAGTTAATAAGTTT+AGG | - | chr7_1:71801701-71801720 | None:intergenic | 25.0% |
! | CTCTTTATCTTGTGTATTTA+GGG | + | chr7_1:71801817-71801836 | Msa1035810:intron | 25.0% |
! | ATTGCTGAATAAGAAAAATG+TGG | + | chr7_1:71802030-71802049 | Msa1035810:CDS | 25.0% |
AGTGTTTAAAGACCTTAATG+AGG | + | chr7_1:71798738-71798757 | Msa1035810:CDS | 30.0% | |
AGGCACAAACTTTAATATTG+AGG | - | chr7_1:71798840-71798859 | None:intergenic | 30.0% | |
TGTGCCTTAATCTATGATTA+TGG | + | chr7_1:71798853-71798872 | Msa1035810:intron | 30.0% | |
GTAGCCATAATCATAGATTA+AGG | - | chr7_1:71798860-71798879 | None:intergenic | 30.0% | |
!! | CTTCATAAGTTGTTTTGCAT+AGG | + | chr7_1:71799033-71799052 | Msa1035810:intron | 30.0% |
!!! | TTCTTCATTTTTTTCCTTGC+AGG | + | chr7_1:71799332-71799351 | Msa1035810:intron | 30.0% |
! | ATTTTCACTTCCTTCTTGAT+AGG | - | chr7_1:71799412-71799431 | None:intergenic | 30.0% |
AGAAGAAGAGAAAATACATC+TGG | - | chr7_1:71799478-71799497 | None:intergenic | 30.0% | |
ACCTTTATGATGCATTGAAA+AGG | + | chr7_1:71799657-71799676 | Msa1035810:intron | 30.0% | |
! | TCCTTTTCAATGCATCATAA+AGG | - | chr7_1:71799661-71799680 | None:intergenic | 30.0% |
TCTCGTCGCTAAAATTTAAA+TGG | + | chr7_1:71799900-71799919 | Msa1035810:intron | 30.0% | |
TGTTCAATATCTTACCTCTT+TGG | + | chr7_1:71799991-71800010 | Msa1035810:intron | 30.0% | |
GTTCAATATCTTACCTCTTT+GGG | + | chr7_1:71799992-71800011 | Msa1035810:intron | 30.0% | |
AAAAAGGATATAACCCAAAG+AGG | - | chr7_1:71800008-71800027 | None:intergenic | 30.0% | |
AATAGATATGACATTGGAGA+TGG | + | chr7_1:71800145-71800164 | Msa1035810:CDS | 30.0% | |
!! | GTGTTTTAAACCCATTACTT+TGG | + | chr7_1:71800243-71800262 | Msa1035810:CDS | 30.0% |
!!! | TTTTGAAATAGGTCAGACTT+AGG | - | chr7_1:71800504-71800523 | None:intergenic | 30.0% |
! | TTGTCATAGACTCATTTTCA+AGG | + | chr7_1:71800551-71800570 | Msa1035810:intron | 30.0% |
! | GCTTAACCTAGCATTTTTAA+AGG | + | chr7_1:71800573-71800592 | Msa1035810:intron | 30.0% |
!! | ATAGACTTTCAAGTTTCATC+AGG | - | chr7_1:71800599-71800618 | None:intergenic | 30.0% |
ATTCAAGCCTTCTTATGATT+TGG | - | chr7_1:71800711-71800730 | None:intergenic | 30.0% | |
ACTCGTTCAATAAAAAGACT+GGG | - | chr7_1:71800889-71800908 | None:intergenic | 30.0% | |
AACTCGTTCAATAAAAAGAC+TGG | - | chr7_1:71800890-71800909 | None:intergenic | 30.0% | |
! | AGTCTTTTTATTGAACGAGT+TGG | + | chr7_1:71800889-71800908 | Msa1035810:intron | 30.0% |
! | TTTTGAATAGACTAGACTGT+AGG | + | chr7_1:71800923-71800942 | Msa1035810:intron | 30.0% |
TCTTACGTGTTAATTACTAG+TGG | + | chr7_1:71801116-71801135 | Msa1035810:intron | 30.0% | |
! | TCGAATGTTATTTGCTTAGA+AGG | - | chr7_1:71801297-71801316 | None:intergenic | 30.0% |
!! | TACTGTATTTCTAGAGAAAG+GGG | + | chr7_1:71801437-71801456 | Msa1035810:CDS | 30.0% |
AATTGGTGAAATAGGATTCA+TGG | + | chr7_1:71801573-71801592 | Msa1035810:intron | 30.0% | |
GCTCTTTATCTTGTGTATTT+AGG | + | chr7_1:71801816-71801835 | Msa1035810:intron | 30.0% | |
AAAAATGTGGTGCAATTCTA+TGG | + | chr7_1:71802043-71802062 | Msa1035810:CDS | 30.0% | |
! | TTGAAAGTGAGATTTTGTTC+AGG | - | chr7_1:71802109-71802128 | None:intergenic | 30.0% |
CAAAATCTCACTTTCAATCA+AGG | + | chr7_1:71802112-71802131 | Msa1035810:CDS | 30.0% | |
! | AGGTATGTATACATTTTACG+TGG | + | chr7_1:71802132-71802151 | Msa1035810:intron | 30.0% |
AGTTCTCCATATGAATTACA+AGG | + | chr7_1:71802489-71802508 | Msa1035810:CDS | 30.0% | |
AGGTCTTTAAACACTCTTTG+AGG | - | chr7_1:71798733-71798752 | None:intergenic | 35.0% | |
CAACTTTGATGAAATACTGC+TGG | - | chr7_1:71798817-71798836 | None:intergenic | 35.0% | |
! | TTTCATTGTTTGAGGCCATT+TGG | + | chr7_1:71798917-71798936 | Msa1035810:intron | 35.0% |
! | CACTGCTCTTGTAAATTTTG+TGG | + | chr7_1:71799384-71799403 | Msa1035810:CDS | 35.0% |
! | TTTTGTGGATCCTATCAAGA+AGG | + | chr7_1:71799399-71799418 | Msa1035810:CDS | 35.0% |
TTCAATCGTGAAAAGTTCTG+TGG | + | chr7_1:71799781-71799800 | Msa1035810:CDS | 35.0% | |
TTTCAAACCTCTGATGTATC+TGG | - | chr7_1:71800114-71800133 | None:intergenic | 35.0% | |
! | AGAGGTTTGAAATGCTTCTA+CGG | + | chr7_1:71800122-71800141 | Msa1035810:CDS | 35.0% |
CTACGGAATAGATATGACAT+TGG | + | chr7_1:71800139-71800158 | Msa1035810:CDS | 35.0% | |
TTTGCGTAGATTACATGAAG+TGG | + | chr7_1:71800183-71800202 | Msa1035810:CDS | 35.0% | |
ACATGAAGTGGAAAACAAGA+AGG | + | chr7_1:71800195-71800214 | Msa1035810:CDS | 35.0% | |
CATGAAGTGGAAAACAAGAA+GGG | + | chr7_1:71800196-71800215 | Msa1035810:CDS | 35.0% | |
AAACCCATTACTTTGGATCT+TGG | + | chr7_1:71800250-71800269 | Msa1035810:CDS | 35.0% | |
AATGGCTACTTAGAATTCTG+GGG | - | chr7_1:71800297-71800316 | None:intergenic | 35.0% | |
CAATGGCTACTTAGAATTCT+GGG | - | chr7_1:71800298-71800317 | None:intergenic | 35.0% | |
ATTCTAAGTAGCCATTGGTA+AGG | + | chr7_1:71800301-71800320 | Msa1035810:intron | 35.0% | |
TGAGTAACCGATAATGTAGA+TGG | - | chr7_1:71800392-71800411 | None:intergenic | 35.0% | |
GGATGAAAATAGGCTAAGTT+GGG | + | chr7_1:71800463-71800482 | Msa1035810:intron | 35.0% | |
! | ATCAGGCCTTTAAAAATGCT+AGG | - | chr7_1:71800582-71800601 | None:intergenic | 35.0% |
TAACATCACAATGATTCGAG+TGG | - | chr7_1:71801050-71801069 | None:intergenic | 35.0% | |
! | ATAACATTCGATGTATCGAC+TGG | + | chr7_1:71801306-71801325 | Msa1035810:intron | 35.0% |
TAGGATTCATGGACATCAAA+TGG | + | chr7_1:71801584-71801603 | Msa1035810:intron | 35.0% | |
CTAACTCGTGTTCCAATAAA+TGG | - | chr7_1:71801618-71801637 | None:intergenic | 35.0% | |
CATTTATTGGAACACGAGTT+AGG | + | chr7_1:71801616-71801635 | Msa1035810:CDS | 35.0% | |
! | CAATGGCATTGAAAAGTCTA+CGG | - | chr7_1:71801662-71801681 | None:intergenic | 35.0% |
! | ACTTTTCAATGCCATTGAGT+CGG | + | chr7_1:71801665-71801684 | Msa1035810:CDS | 35.0% |
GGCATTAAGCTATATGAATG+TGG | + | chr7_1:71801919-71801938 | Msa1035810:intron | 35.0% | |
AGCTTTCTCAAATCCAAAAG+AGG | - | chr7_1:71801993-71802012 | None:intergenic | 35.0% | |
!!! | ACATTTTTTCTAGGAGCCAA+TGG | + | chr7_1:71802167-71802186 | Msa1035810:intron | 35.0% |
!!! | CATTTTTTCTAGGAGCCAAT+GGG | + | chr7_1:71802168-71802187 | Msa1035810:intron | 35.0% |
! | TGATTTTCATGTTAGCCCAT+TGG | - | chr7_1:71802186-71802205 | None:intergenic | 35.0% |
! | TTGTTTGAGGCCATTTGGAT+TGG | + | chr7_1:71798922-71798941 | Msa1035810:intron | 40.0% |
ACTGAAGACACATCCAATAG+CGG | - | chr7_1:71799436-71799455 | None:intergenic | 40.0% | |
AATGCATCATAAAGGTGACG+AGG | - | chr7_1:71799653-71799672 | None:intergenic | 40.0% | |
! | GTCAATTGTGTTGATGCCAA+CGG | + | chr7_1:71799751-71799770 | Msa1035810:CDS | 40.0% |
CTGTGGAAAAAGATGTCAAC+AGG | + | chr7_1:71799798-71799817 | Msa1035810:CDS | 40.0% | |
TGTGTTTCCAGATACATCAG+AGG | + | chr7_1:71800104-71800123 | Msa1035810:intron | 40.0% | |
CCTCCAAGATCCAAAGTAAT+GGG | - | chr7_1:71800256-71800275 | None:intergenic | 40.0% | |
ACCTCCAAGATCCAAAGTAA+TGG | - | chr7_1:71800257-71800276 | None:intergenic | 40.0% | |
CCAATGGCTACTTAGAATTC+TGG | - | chr7_1:71800299-71800318 | None:intergenic | 40.0% | |
CCAGAATTCTAAGTAGCCAT+TGG | + | chr7_1:71800296-71800315 | Msa1035810:CDS | 40.0% | |
! | AAAAAGAGTGGCCTTACCAA+TGG | - | chr7_1:71800315-71800334 | None:intergenic | 40.0% |
CAACATCTCATCTCCTAGTA+GGG | + | chr7_1:71800442-71800461 | Msa1035810:intron | 40.0% | |
CTCCTAGTAGGGATGAAAAT+AGG | + | chr7_1:71800453-71800472 | Msa1035810:intron | 40.0% | |
! | AGCCTATTTTCATCCCTACT+AGG | - | chr7_1:71800458-71800477 | None:intergenic | 40.0% |
GGGATGAAAATAGGCTAAGT+TGG | + | chr7_1:71800462-71800481 | Msa1035810:intron | 40.0% | |
! | GAAAATAGGCTAAGTTGGGT+CGG | + | chr7_1:71800467-71800486 | Msa1035810:intron | 40.0% |
! | AAAATAGGCTAAGTTGGGTC+GGG | + | chr7_1:71800468-71800487 | Msa1035810:intron | 40.0% |
! | ATGGCAGAGATGCCATTTAT+TGG | + | chr7_1:71801603-71801622 | Msa1035810:CDS | 40.0% |
TTGGAACACGAGTTAGGTTT+AGG | + | chr7_1:71801622-71801641 | Msa1035810:CDS | 40.0% | |
CGAGTTAGGTTTAGGAAACA+AGG | + | chr7_1:71801630-71801649 | Msa1035810:CDS | 40.0% | |
AATGCCTGCAGATATATGCA+TGG | - | chr7_1:71801905-71801924 | None:intergenic | 40.0% | |
CTATATGAATGTGGAGATGC+TGG | + | chr7_1:71801928-71801947 | Msa1035810:CDS | 40.0% | |
CAAGACTCAGAAAGCTATCA+AGG | + | chr7_1:71802404-71802423 | Msa1035810:CDS | 40.0% | |
AGAAAGCTATCAAGGAAGAG+CGG | + | chr7_1:71802412-71802431 | Msa1035810:CDS | 40.0% | |
! | AGAGAGTCTTGTATTGTCAG+TGG | + | chr7_1:71802441-71802460 | Msa1035810:CDS | 40.0% |
ATTGTCAGTGGAAGAACTTC+AGG | + | chr7_1:71802453-71802472 | Msa1035810:CDS | 40.0% | |
CGAGCTCCTTGTAATTCATA+TGG | - | chr7_1:71802498-71802517 | None:intergenic | 40.0% | |
GACCTTAATGAGGATGCATG+CGG | + | chr7_1:71798748-71798767 | Msa1035810:CDS | 45.0% | |
GCATGCGGTGTTTGTAAAGA+CGG | + | chr7_1:71798763-71798782 | Msa1035810:CDS | 45.0% | |
! | TGGGTGACATTTTCACGAGA+AGG | + | chr7_1:71799225-71799244 | Msa1035810:intron | 45.0% |
GGAAGTGAAAATCCCGCTAT+TGG | + | chr7_1:71799420-71799439 | Msa1035810:CDS | 45.0% | |
CTGAAGACACATCCAATAGC+GGG | - | chr7_1:71799435-71799454 | None:intergenic | 45.0% | |
ACGATTGAACTCATCACCGT+TGG | - | chr7_1:71799770-71799789 | None:intergenic | 45.0% | |
CCCATTACTTTGGATCTTGG+AGG | + | chr7_1:71800253-71800272 | Msa1035810:CDS | 45.0% | |
CCTACTAGGAGATGAGATGT+TGG | - | chr7_1:71800444-71800463 | None:intergenic | 45.0% | |
CCAACATCTCATCTCCTAGT+AGG | + | chr7_1:71800441-71800460 | Msa1035810:intron | 45.0% | |
!! | AAGTTGGGTCGGGTTTTGTA+AGG | + | chr7_1:71800478-71800497 | Msa1035810:intron | 45.0% |
GAATAGACTAGACTGTAGGC+CGG | + | chr7_1:71800927-71800946 | Msa1035810:intron | 45.0% | |
!! | ACATTCGATGTATCGACTGG+TGG | + | chr7_1:71801309-71801328 | Msa1035810:intron | 45.0% |
ATCCGGCATAATCAACAGCA+CGG | - | chr7_1:71801413-71801432 | None:intergenic | 45.0% | |
! | CAATCTGTGTTGCTACTCTC+AGG | + | chr7_1:71801466-71801485 | Msa1035810:CDS | 45.0% |
!! | GTTTGAACTCACCGACTCAA+TGG | - | chr7_1:71801679-71801698 | None:intergenic | 45.0% |
GCTACCATGCATATATCTGC+AGG | + | chr7_1:71801898-71801917 | Msa1035810:intron | 45.0% | |
! | TGTAACACTTGTAGCGCTGA+TGG | - | chr7_1:71801959-71801978 | None:intergenic | 45.0% |
CGCTACAAGTGTTACACACT+TGG | + | chr7_1:71801963-71801982 | Msa1035810:CDS | 45.0% | |
! | CACACTTGGACTTCCTCTTT+TGG | + | chr7_1:71801977-71801996 | Msa1035810:CDS | 45.0% |
TGTGGTGCAATTCTATGGAG+TGG | + | chr7_1:71802048-71802067 | Msa1035810:CDS | 45.0% | |
!!! | ATACTAATTTAATTTAATTT+TGG | + | chr7_1:71799205-71799224 | Msa1035810:intron | 5.0% |
!!! | TACTAATTTAATTTAATTTT+GGG | + | chr7_1:71799206-71799225 | Msa1035810:intron | 5.0% |
CACCGCATGCATCCTCATTA+AGG | - | chr7_1:71798753-71798772 | None:intergenic | 50.0% | |
TGCGGTGTTTGTAAAGACGG+AGG | + | chr7_1:71798766-71798785 | Msa1035810:CDS | 50.0% | |
GGATCTTGGAGGTGAGAAGA+TGG | + | chr7_1:71800264-71800283 | Msa1035810:CDS | 50.0% | |
! | TCCCGTGCTGTTGATTATGC+CGG | + | chr7_1:71801408-71801427 | Msa1035810:CDS | 50.0% |
TCCGGCATAATCAACAGCAC+GGG | - | chr7_1:71801412-71801431 | None:intergenic | 50.0% | |
TTACAAGGAGCTCGTGAGAG+AGG | + | chr7_1:71802504-71802523 | Msa1035810:CDS | 50.0% | |
TACAAGGAGCTCGTGAGAGA+GGG | + | chr7_1:71802505-71802524 | Msa1035810:CDS | 50.0% | |
ACTAGACTGTAGGCCGGTGT+CGG | + | chr7_1:71800933-71800952 | Msa1035810:intron | 55.0% | |
CATGTCAGACCATCCGACAC+CGG | - | chr7_1:71800949-71800968 | None:intergenic | 55.0% | |
TGCAGTGCCAGTCACCTGCT+GGG | - | chr7_1:71799362-71799381 | None:intergenic | 60.0% | |
ATGCAGTGCCAGTCACCTGC+TGG | - | chr7_1:71799363-71799382 | None:intergenic | 60.0% | |
TCCTTGCAGGAGCTCCCAGC+AGG | + | chr7_1:71799345-71799364 | Msa1035810:intron | 65.0% | |
ACCTGCTGGGAGCTCCTGCA+AGG | - | chr7_1:71799349-71799368 | None:intergenic | 65.0% | |
AGGAGCTCCCAGCAGGTGAC+TGG | + | chr7_1:71799352-71799371 | Msa1035810:intron | 65.0% | |
! | GACTGTAGGCCGGTGTCGGA+TGG | + | chr7_1:71800937-71800956 | Msa1035810:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_1 | gene | 71798718 | 71802557 | 71798718 | ID=Msa1035810;Name=Msa1035810 |
chr7_1 | mRNA | 71798718 | 71802557 | 71798718 | ID=Msa1035810-mRNA-1;Parent=Msa1035810;Name=Msa1035810-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|8|0|367 |
chr7_1 | exon | 71798718 | 71798849 | 71798718 | ID=Msa1035810-mRNA-1:exon:17420;Parent=Msa1035810-mRNA-1 |
chr7_1 | exon | 71799354 | 71799480 | 71799354 | ID=Msa1035810-mRNA-1:exon:17421;Parent=Msa1035810-mRNA-1 |
chr7_1 | exon | 71799746 | 71799819 | 71799746 | ID=Msa1035810-mRNA-1:exon:17422;Parent=Msa1035810-mRNA-1 |
chr7_1 | exon | 71800115 | 71800317 | 71800115 | ID=Msa1035810-mRNA-1:exon:17423;Parent=Msa1035810-mRNA-1 |
chr7_1 | exon | 71801401 | 71801487 | 71801401 | ID=Msa1035810-mRNA-1:exon:17424;Parent=Msa1035810-mRNA-1 |
chr7_1 | exon | 71801587 | 71801686 | 71801587 | ID=Msa1035810-mRNA-1:exon:17425;Parent=Msa1035810-mRNA-1 |
chr7_1 | exon | 71801920 | 71802133 | 71801920 | ID=Msa1035810-mRNA-1:exon:17426;Parent=Msa1035810-mRNA-1 |
chr7_1 | exon | 71802391 | 71802557 | 71802391 | ID=Msa1035810-mRNA-1:exon:17427;Parent=Msa1035810-mRNA-1 |
chr7_1 | CDS | 71798718 | 71798849 | 71798718 | ID=Msa1035810-mRNA-1:cds;Parent=Msa1035810-mRNA-1 |
chr7_1 | CDS | 71799354 | 71799480 | 71799354 | ID=Msa1035810-mRNA-1:cds;Parent=Msa1035810-mRNA-1 |
chr7_1 | CDS | 71799746 | 71799819 | 71799746 | ID=Msa1035810-mRNA-1:cds;Parent=Msa1035810-mRNA-1 |
chr7_1 | CDS | 71800115 | 71800317 | 71800115 | ID=Msa1035810-mRNA-1:cds;Parent=Msa1035810-mRNA-1 |
chr7_1 | CDS | 71801401 | 71801487 | 71801401 | ID=Msa1035810-mRNA-1:cds;Parent=Msa1035810-mRNA-1 |
chr7_1 | CDS | 71801587 | 71801686 | 71801587 | ID=Msa1035810-mRNA-1:cds;Parent=Msa1035810-mRNA-1 |
chr7_1 | CDS | 71801920 | 71802133 | 71801920 | ID=Msa1035810-mRNA-1:cds;Parent=Msa1035810-mRNA-1 |
chr7_1 | CDS | 71802391 | 71802557 | 71802391 | ID=Msa1035810-mRNA-1:cds;Parent=Msa1035810-mRNA-1 |
Gene Sequence |
Protein sequence |