AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1035810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1035810 MtrunA17_Chr7g0259981 80.000 315 51 2 1 312 1 306 0.0 533
Msa1035810 MtrunA17_Chr1g0185491 46.429 336 157 4 10 324 913 1246 6.48e-99 321
Msa1035810 MtrunA17_Chr1g0205451 40.065 307 161 4 11 296 706 1010 5.51e-73 246
Msa1035810 MtrunA17_Chr2g0316251 36.893 309 174 5 8 298 861 1166 2.25e-61 213
Msa1035810 MtrunA17_Chr5g0430361 34.985 323 183 8 8 309 752 1068 5.47e-58 203
Msa1035810 MtrunA17_Chr3g0105291 32.132 333 194 8 13 323 707 1029 1.87e-55 196
Msa1035810 MtrunA17_Chr5g0407211 33.688 282 162 6 13 278 125 397 1.79e-48 169
Msa1035810 MtrunA17_Chr5g0407251 32.979 282 164 6 13 278 125 397 2.80e-47 166
Msa1035810 MtrunA17_Chr7g0270101 32.313 294 162 7 13 278 481 765 1.66e-42 157
Msa1035810 MtrunA17_Chr3g0134811 30.128 312 191 6 13 304 493 797 8.00e-42 155
Msa1035810 MtrunA17_Chr3g0134821 30.671 313 170 7 13 295 526 821 3.08e-40 151
Msa1035810 MtrunA17_Chr7g0265211 25.683 366 186 11 13 298 588 947 3.05e-28 116
Msa1035810 MtrunA17_Chr1g0182481 26.836 354 180 13 13 299 553 894 2.23e-27 114
Msa1035810 MtrunA17_Chr3g0134851 29.433 282 139 9 13 278 205 442 3.58e-25 106
Msa1035810 MtrunA17_Chr1g0179841 24.863 366 193 11 13 300 443 804 1.49e-24 105
Msa1035810 MtrunA17_Chr4g0028111 22.543 346 173 11 13 273 227 562 9.58e-19 87.8
Msa1035810 MtrunA17_Chr4g0027811 23.209 349 176 11 6 298 266 578 4.39e-18 85.9
Msa1035810 MtrunA17_Chr4g0025251 23.985 271 157 9 68 298 440 701 5.89e-15 76.3
Msa1035810 MtrunA17_Chr2g0320451 29.221 154 100 4 148 298 876 1023 4.16e-14 73.9
Msa1035810 MtrunA17_Chr2g0320451 47.917 48 25 0 13 60 557 604 1.93e-11 65.9
Msa1035810 MtrunA17_Chr4g0038871 55.102 49 20 1 11 57 696 744 8.39e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1035810 AT5G36740.5 41.290 310 163 4 11 303 647 954 2.03e-80 267
Msa1035810 AT5G36740.1 41.290 310 163 4 11 303 647 954 2.03e-80 267
Msa1035810 AT5G36740.4 39.688 320 164 5 11 303 494 811 1.51e-76 255
Msa1035810 AT1G05380.3 39.228 311 165 5 16 308 627 931 1.14e-72 245
Msa1035810 AT1G05380.1 39.228 311 165 5 16 308 627 931 1.14e-72 245
Msa1035810 AT1G05380.2 39.228 311 165 5 16 308 627 931 1.14e-72 245
Msa1035810 AT4G14920.2 38.387 310 167 7 8 298 679 983 1.19e-70 239
Msa1035810 AT4G14920.1 38.387 310 167 7 8 298 679 983 1.19e-70 239
Msa1035810 AT4G14920.3 38.387 310 167 7 8 298 679 983 1.20e-70 239
Msa1035810 AT5G36670.4 38.037 326 165 6 11 303 647 968 2.03e-70 239
Msa1035810 AT5G36670.5 38.037 326 165 6 11 303 647 968 2.03e-70 239
Msa1035810 AT5G36670.3 36.607 336 166 7 11 303 494 825 2.74e-66 226
Msa1035810 AT5G36670.1 36.607 336 166 7 11 303 647 978 3.72e-66 227
Msa1035810 AT5G36670.2 42.570 249 124 4 11 242 647 893 1.28e-64 221
Msa1035810 AT5G36740.2 42.570 249 124 4 11 242 647 893 1.28e-64 221
Msa1035810 AT5G36740.3 42.570 249 124 4 11 242 647 893 1.28e-64 221
Msa1035810 AT3G14980.6 36.859 312 174 6 11 304 723 1029 2.89e-59 207
Msa1035810 AT3G14980.1 36.859 312 174 6 11 304 723 1029 2.89e-59 207
Msa1035810 AT3G14980.2 36.859 312 174 6 11 304 723 1029 2.89e-59 207
Msa1035810 AT3G14980.3 36.859 312 174 6 11 304 723 1029 3.56e-59 206
Msa1035810 AT3G14980.5 36.859 312 174 6 11 304 678 984 3.62e-59 207
Msa1035810 AT5G58610.6 38.127 299 161 8 2 293 682 963 3.29e-54 192
Msa1035810 AT5G58610.1 38.127 299 161 8 2 293 682 963 4.13e-54 192
Msa1035810 AT5G58610.4 35.873 315 172 9 2 293 460 767 8.61e-54 190
Msa1035810 AT5G58610.3 35.873 315 172 9 2 293 691 998 3.11e-53 189
Msa1035810 AT5G58610.5 35.873 315 172 9 2 293 682 989 3.60e-53 189
Msa1035810 AT5G58610.8 35.873 315 172 9 2 293 691 998 3.88e-53 189
Msa1035810 AT5G58610.2 35.873 315 172 9 2 293 691 998 3.88e-53 189
Msa1035810 AT5G58610.7 35.873 315 172 9 2 293 682 989 4.55e-53 189
Msa1035810 AT5G58610.10 33.955 268 152 7 2 246 691 956 4.06e-42 157
Msa1035810 AT5G58610.9 33.955 268 152 7 2 246 682 947 5.21e-42 157
Msa1035810 AT5G63900.1 33.016 315 184 12 11 309 253 556 5.72e-39 146
Msa1035810 AT2G36720.1 26.203 374 194 10 13 308 614 983 1.07e-35 139
Msa1035810 AT2G36720.2 26.203 374 194 10 13 308 614 983 1.07e-35 139
Msa1035810 AT2G37520.1 27.809 356 184 11 13 300 467 817 5.24e-34 133
Msa1035810 AT3G14980.4 36.406 217 115 6 11 209 723 934 1.76e-33 132
Msa1035810 AT2G27980.1 26.260 377 188 14 6 298 687 1057 1.85e-31 126
Msa1035810 AT3G53680.1 26.519 362 183 13 13 302 485 835 1.54e-29 120
Msa1035810 AT3G53680.2 26.519 362 183 13 13 302 487 837 1.62e-29 120
Msa1035810 AT5G58610.11 30.870 230 134 7 2 208 682 909 1.71e-27 114

Find 68 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACACTTGGACTTCCTCTTT+TGG 0.216281 7_1:+71801977 Msa1035810:CDS
CCAATGGCTACTTAGAATTC+TGG 0.217920 7_1:-71800296 None:intergenic
ATGGCAGAGATGCCATTTAT+TGG 0.258182 7_1:+71801603 Msa1035810:CDS
CTAACTCGTGTTCCAATAAA+TGG 0.259990 7_1:-71801615 None:intergenic
TTGGAACACGAGTTAGGTTT+AGG 0.320138 7_1:+71801622 Msa1035810:CDS
AAACCCATTACTTTGGATCT+TGG 0.343252 7_1:+71800250 Msa1035810:CDS
AATTGGTGAAATAGGATTCA+TGG 0.360966 7_1:+71801573 Msa1035810:intron
CACCGCATGCATCCTCATTA+AGG 0.362137 7_1:-71798750 None:intergenic
TTTACTGTATTTCTAGAGAA+AGG 0.371214 7_1:+71801435 Msa1035810:CDS
GGAAGTGAAAATCCCGCTAT+TGG 0.378386 7_1:+71799420 Msa1035810:CDS
CATTTATTGGAACACGAGTT+AGG 0.385764 7_1:+71801616 Msa1035810:CDS
ATTGTCAGTGGAAGAACTTC+AGG 0.387079 7_1:+71802453 Msa1035810:CDS
CAATGGCTACTTAGAATTCT+GGG 0.405998 7_1:-71800295 None:intergenic
CGAGCTCCTTGTAATTCATA+TGG 0.411495 7_1:-71802495 None:intergenic
CGCTACAAGTGTTACACACT+TGG 0.417196 7_1:+71801963 Msa1035810:CDS
TTACTGTATTTCTAGAGAAA+GGG 0.425474 7_1:+71801436 Msa1035810:CDS
CCTCCAAGATCCAAAGTAAT+GGG 0.432064 7_1:-71800253 None:intergenic
AGAGAAAGTTTATCAACAAT+CGG 0.432642 7_1:-71802547 None:intergenic
CCCATTACTTTGGATCTTGG+AGG 0.440114 7_1:+71800253 Msa1035810:CDS
AGGCACAAACTTTAATATTG+AGG 0.444068 7_1:-71798837 None:intergenic
AGGAGCTCCCAGCAGGTGAC+TGG 0.452037 7_1:+71799352 Msa1035810:intron
TCCTTGCAGGAGCTCCCAGC+AGG 0.462436 7_1:+71799345 Msa1035810:intron
TAGGATTCATGGACATCAAA+TGG 0.466229 7_1:+71801584 Msa1035810:intron
CAATCTGTGTTGCTACTCTC+AGG 0.469065 7_1:+71801466 Msa1035810:CDS
GGATCTTGGAGGTGAGAAGA+TGG 0.471084 7_1:+71800264 Msa1035810:CDS
CAAGACTCAGAAAGCTATCA+AGG 0.471221 7_1:+71802404 Msa1035810:CDS
ATGCAGTGCCAGTCACCTGC+TGG 0.478068 7_1:-71799360 None:intergenic
CAAAATCTCACTTTCAATCA+AGG 0.485189 7_1:+71802112 Msa1035810:CDS
GTTTGAACTCACCGACTCAA+TGG 0.485586 7_1:-71801676 None:intergenic
TCCCGTGCTGTTGATTATGC+CGG 0.486765 7_1:+71801408 Msa1035810:CDS
TTTGCGTAGATTACATGAAG+TGG 0.508611 7_1:+71800183 Msa1035810:CDS
CAACTTTGATGAAATACTGC+TGG 0.514841 7_1:-71798814 None:intergenic
ACCTCCAAGATCCAAAGTAA+TGG 0.516234 7_1:-71800254 None:intergenic
CGAGTTAGGTTTAGGAAACA+AGG 0.521835 7_1:+71801630 Msa1035810:CDS
AGGTCTTTAAACACTCTTTG+AGG 0.524105 7_1:-71798730 None:intergenic
ACATGAAGTGGAAAACAAGA+AGG 0.524527 7_1:+71800195 Msa1035810:CDS
AATAGATATGACATTGGAGA+TGG 0.525905 7_1:+71800145 Msa1035810:CDS
CCAGAATTCTAAGTAGCCAT+TGG 0.533832 7_1:+71800296 Msa1035810:CDS
GAGAAAGTTTATCAACAATC+GGG 0.534292 7_1:-71802546 None:intergenic
AGCTTTCTCAAATCCAAAAG+AGG 0.538189 7_1:-71801990 None:intergenic
AGAGGTTTGAAATGCTTCTA+CGG 0.542161 7_1:+71800122 Msa1035810:CDS
CTATATGAATGTGGAGATGC+TGG 0.542228 7_1:+71801928 Msa1035810:CDS
TACTGTATTTCTAGAGAAAG+GGG 0.544754 7_1:+71801437 Msa1035810:CDS
ACGATTGAACTCATCACCGT+TGG 0.545711 7_1:-71799767 None:intergenic
TTACAAGGAGCTCGTGAGAG+AGG 0.547515 7_1:+71802504 Msa1035810:CDS
TACAAGGAGCTCGTGAGAGA+GGG 0.549642 7_1:+71802505 Msa1035810:CDS
AGTGTTTAAAGACCTTAATG+AGG 0.560861 7_1:+71798738 Msa1035810:CDS
GCATGCGGTGTTTGTAAAGA+CGG 0.564702 7_1:+71798763 Msa1035810:CDS
TGTAACACTTGTAGCGCTGA+TGG 0.581027 7_1:-71801956 None:intergenic
CTGAAGACACATCCAATAGC+GGG 0.584552 7_1:-71799432 None:intergenic
CAATGGCATTGAAAAGTCTA+CGG 0.587830 7_1:-71801659 None:intergenic
TGCAGTGCCAGTCACCTGCT+GGG 0.589071 7_1:-71799359 None:intergenic
TCCGGCATAATCAACAGCAC+GGG 0.592499 7_1:-71801409 None:intergenic
ATCCGGCATAATCAACAGCA+CGG 0.595394 7_1:-71801410 None:intergenic
TTCAATCGTGAAAAGTTCTG+TGG 0.597157 7_1:+71799781 Msa1035810:CDS
GGCATTAAGCTATATGAATG+TGG 0.599720 7_1:+71801919 Msa1035810:intron
AGAGAGTCTTGTATTGTCAG+TGG 0.611720 7_1:+71802441 Msa1035810:CDS
CATGAAGTGGAAAACAAGAA+GGG 0.614500 7_1:+71800196 Msa1035810:CDS
CTACGGAATAGATATGACAT+TGG 0.617609 7_1:+71800139 Msa1035810:CDS
AGTTCTCCATATGAATTACA+AGG 0.626343 7_1:+71802489 Msa1035810:CDS
AATGGCTACTTAGAATTCTG+GGG 0.631109 7_1:-71800294 None:intergenic
TGTGGTGCAATTCTATGGAG+TGG 0.632201 7_1:+71802048 Msa1035810:CDS
TGTGTTTCCAGATACATCAG+AGG 0.640085 7_1:+71800104 Msa1035810:intron
TGCGGTGTTTGTAAAGACGG+AGG 0.684277 7_1:+71798766 Msa1035810:CDS
GTCAATTGTGTTGATGCCAA+CGG 0.685380 7_1:+71799751 Msa1035810:CDS
ACTGAAGACACATCCAATAG+CGG 0.687331 7_1:-71799433 None:intergenic
GACCTTAATGAGGATGCATG+CGG 0.693617 7_1:+71798748 Msa1035810:CDS
AGAAAGCTATCAAGGAAGAG+CGG 0.699589 7_1:+71802412 Msa1035810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAATTTTTATTTAATTT+AGG + chr7_1:71801735-71801754 Msa1035810:intron 0.0%
!!! TTTAATTTTTATTTAATTTA+GGG + chr7_1:71801736-71801755 Msa1035810:intron 0.0%
!! GTATTAATTAATTTATCATT+AGG - chr7_1:71799162-71799181 None:intergenic 10.0%
!!! AAACATATAATTTTTGAAAT+AGG - chr7_1:71800515-71800534 None:intergenic 10.0%
!! TAAAGTCTATTTAATTAAAT+AGG - chr7_1:71800853-71800872 None:intergenic 10.0%
!! TTATCTAATAAATTAGTTAT+CGG - chr7_1:71801148-71801167 None:intergenic 10.0%
!! AAAAATAAATCAATACAAAC+AGG + chr7_1:71799059-71799078 Msa1035810:intron 15.0%
!! AGTTAAATTATTTCAATATG+TGG - chr7_1:71799280-71799299 None:intergenic 15.0%
!!! AAGTTTTGTTTATTTTTGAT+GGG - chr7_1:71799573-71799592 None:intergenic 15.0%
!!! AAAGTTTTGTTTATTTTTGA+TGG - chr7_1:71799574-71799593 None:intergenic 15.0%
!! AATATAGTTATAAAAAAGAG+TGG - chr7_1:71800327-71800346 None:intergenic 15.0%
!! ATATTCAACAATATCAATAA+TGG + chr7_1:71800743-71800762 Msa1035810:intron 15.0%
!!! AGATATTTTGAATAAGTTTA+TGG + chr7_1:71801169-71801188 Msa1035810:intron 15.0%
!! TATATTTAGAAACTTCTTAA+TGG - chr7_1:71801195-71801214 None:intergenic 15.0%
!! TGCTGTAAAAAAAATTTAAA+TGG - chr7_1:71801221-71801240 None:intergenic 15.0%
!!! TGTTGTAGATATTTTTTTAT+TGG + chr7_1:71801352-71801371 Msa1035810:intron 15.0%
!! TAATTATGGAGTTTATTAAT+TGG + chr7_1:71801556-71801575 Msa1035810:intron 15.0%
!!! TTTTTTTAAGTAGAGTAAAA+AGG - chr7_1:71801857-71801876 None:intergenic 15.0%
!!! TATACTTTTCTATTTTCTTT+TGG - chr7_1:71802081-71802100 None:intergenic 15.0%
!!! AAGTTTATTTTCATTGTTTG+AGG + chr7_1:71798909-71798928 Msa1035810:intron 20.0%
!! AAAAAATAAACCAATCCAAA+TGG - chr7_1:71798935-71798954 None:intergenic 20.0%
!! TCATTATATGTTAATGACAT+TGG + chr7_1:71799133-71799152 Msa1035810:intron 20.0%
!! TATTCAGTTAATTAATGAAG+AGG - chr7_1:71799522-71799541 None:intergenic 20.0%
!!! AGTTTTGTTTATTTTTGATG+GGG - chr7_1:71799572-71799591 None:intergenic 20.0%
!! AAAAATTATATGTTTGAGTC+TGG + chr7_1:71800520-71800539 Msa1035810:intron 20.0%
!! TTATTTAGTAGCTGATATAT+TGG - chr7_1:71800688-71800707 None:intergenic 20.0%
!! TAAATAACCAAATCATAAGA+AGG + chr7_1:71800701-71800720 Msa1035810:intron 20.0%
!! AGTCTATTCAAAATCTAATT+CGG - chr7_1:71800916-71800935 None:intergenic 20.0%
!! AAAGATATGATTATGAGAAA+GGG - chr7_1:71800979-71800998 None:intergenic 20.0%
!! AAAAGATATGATTATGAGAA+AGG - chr7_1:71800980-71800999 None:intergenic 20.0%
!! TAAAAACACAAATAAGATGA+TGG - chr7_1:71801088-71801107 None:intergenic 20.0%
!! TAGAAATACAGTAAAAAATC+CGG - chr7_1:71801430-71801449 None:intergenic 20.0%
!! GTCGAAAAACATATTAATTA+TGG + chr7_1:71801542-71801561 Msa1035810:intron 20.0%
!! AGTTTATTAATTGGTGAAAT+AGG + chr7_1:71801565-71801584 Msa1035810:intron 20.0%
!! AATGCTAAGAAACTAAATAT+AGG + chr7_1:71801760-71801779 Msa1035810:intron 20.0%
!!! TATACATGTACATTTTTTCT+AGG + chr7_1:71802158-71802177 Msa1035810:intron 20.0%
!! TAACGATCAAAGTTATTTAA+AGG - chr7_1:71802314-71802333 None:intergenic 20.0%
!!! CTCTAAAATGATAAGATCAA+AGG - chr7_1:71799085-71799104 None:intergenic 25.0%
! TACTTTATGTTTGTGTATAG+AGG + chr7_1:71799967-71799986 Msa1035810:intron 25.0%
! TCTTCTCTAAATTGAGAAAA+AGG - chr7_1:71800024-71800043 None:intergenic 25.0%
! GAAATATCCATCTACATTAT+CGG + chr7_1:71800382-71800401 Msa1035810:intron 25.0%
!!! CATGATGCTCTAAAAAAAAT+TGG + chr7_1:71800414-71800433 Msa1035810:intron 25.0%
!! TCATACGATTTTTAATAGCA+GGG - chr7_1:71800652-71800671 None:intergenic 25.0%
!! TTCATACGATTTTTAATAGC+AGG - chr7_1:71800653-71800672 None:intergenic 25.0%
! AAGATATGATTATGAGAAAG+GGG - chr7_1:71800978-71800997 None:intergenic 25.0%
! AAGCTCAAATCAATACTTAA+AGG + chr7_1:71801010-71801029 Msa1035810:intron 25.0%
! TAATTAACACGTAAGAAAAC+TGG - chr7_1:71801112-71801131 None:intergenic 25.0%
! TATGTTCTTATTATCTTGTC+AGG + chr7_1:71801379-71801398 Msa1035810:intron 25.0%
!!! TTTACTGTATTTCTAGAGAA+AGG + chr7_1:71801435-71801454 Msa1035810:CDS 25.0%
!!! TTACTGTATTTCTAGAGAAA+GGG + chr7_1:71801436-71801455 Msa1035810:CDS 25.0%
! AGAGACAAGTTAATAAGTTT+AGG - chr7_1:71801701-71801720 None:intergenic 25.0%
! CTCTTTATCTTGTGTATTTA+GGG + chr7_1:71801817-71801836 Msa1035810:intron 25.0%
! ATTGCTGAATAAGAAAAATG+TGG + chr7_1:71802030-71802049 Msa1035810:CDS 25.0%
AGTGTTTAAAGACCTTAATG+AGG + chr7_1:71798738-71798757 Msa1035810:CDS 30.0%
AGGCACAAACTTTAATATTG+AGG - chr7_1:71798840-71798859 None:intergenic 30.0%
TGTGCCTTAATCTATGATTA+TGG + chr7_1:71798853-71798872 Msa1035810:intron 30.0%
GTAGCCATAATCATAGATTA+AGG - chr7_1:71798860-71798879 None:intergenic 30.0%
!! CTTCATAAGTTGTTTTGCAT+AGG + chr7_1:71799033-71799052 Msa1035810:intron 30.0%
!!! TTCTTCATTTTTTTCCTTGC+AGG + chr7_1:71799332-71799351 Msa1035810:intron 30.0%
! ATTTTCACTTCCTTCTTGAT+AGG - chr7_1:71799412-71799431 None:intergenic 30.0%
AGAAGAAGAGAAAATACATC+TGG - chr7_1:71799478-71799497 None:intergenic 30.0%
ACCTTTATGATGCATTGAAA+AGG + chr7_1:71799657-71799676 Msa1035810:intron 30.0%
! TCCTTTTCAATGCATCATAA+AGG - chr7_1:71799661-71799680 None:intergenic 30.0%
TCTCGTCGCTAAAATTTAAA+TGG + chr7_1:71799900-71799919 Msa1035810:intron 30.0%
TGTTCAATATCTTACCTCTT+TGG + chr7_1:71799991-71800010 Msa1035810:intron 30.0%
GTTCAATATCTTACCTCTTT+GGG + chr7_1:71799992-71800011 Msa1035810:intron 30.0%
AAAAAGGATATAACCCAAAG+AGG - chr7_1:71800008-71800027 None:intergenic 30.0%
AATAGATATGACATTGGAGA+TGG + chr7_1:71800145-71800164 Msa1035810:CDS 30.0%
!! GTGTTTTAAACCCATTACTT+TGG + chr7_1:71800243-71800262 Msa1035810:CDS 30.0%
!!! TTTTGAAATAGGTCAGACTT+AGG - chr7_1:71800504-71800523 None:intergenic 30.0%
! TTGTCATAGACTCATTTTCA+AGG + chr7_1:71800551-71800570 Msa1035810:intron 30.0%
! GCTTAACCTAGCATTTTTAA+AGG + chr7_1:71800573-71800592 Msa1035810:intron 30.0%
!! ATAGACTTTCAAGTTTCATC+AGG - chr7_1:71800599-71800618 None:intergenic 30.0%
ATTCAAGCCTTCTTATGATT+TGG - chr7_1:71800711-71800730 None:intergenic 30.0%
ACTCGTTCAATAAAAAGACT+GGG - chr7_1:71800889-71800908 None:intergenic 30.0%
AACTCGTTCAATAAAAAGAC+TGG - chr7_1:71800890-71800909 None:intergenic 30.0%
! AGTCTTTTTATTGAACGAGT+TGG + chr7_1:71800889-71800908 Msa1035810:intron 30.0%
! TTTTGAATAGACTAGACTGT+AGG + chr7_1:71800923-71800942 Msa1035810:intron 30.0%
TCTTACGTGTTAATTACTAG+TGG + chr7_1:71801116-71801135 Msa1035810:intron 30.0%
! TCGAATGTTATTTGCTTAGA+AGG - chr7_1:71801297-71801316 None:intergenic 30.0%
!! TACTGTATTTCTAGAGAAAG+GGG + chr7_1:71801437-71801456 Msa1035810:CDS 30.0%
AATTGGTGAAATAGGATTCA+TGG + chr7_1:71801573-71801592 Msa1035810:intron 30.0%
GCTCTTTATCTTGTGTATTT+AGG + chr7_1:71801816-71801835 Msa1035810:intron 30.0%
AAAAATGTGGTGCAATTCTA+TGG + chr7_1:71802043-71802062 Msa1035810:CDS 30.0%
! TTGAAAGTGAGATTTTGTTC+AGG - chr7_1:71802109-71802128 None:intergenic 30.0%
CAAAATCTCACTTTCAATCA+AGG + chr7_1:71802112-71802131 Msa1035810:CDS 30.0%
! AGGTATGTATACATTTTACG+TGG + chr7_1:71802132-71802151 Msa1035810:intron 30.0%
AGTTCTCCATATGAATTACA+AGG + chr7_1:71802489-71802508 Msa1035810:CDS 30.0%
AGGTCTTTAAACACTCTTTG+AGG - chr7_1:71798733-71798752 None:intergenic 35.0%
CAACTTTGATGAAATACTGC+TGG - chr7_1:71798817-71798836 None:intergenic 35.0%
! TTTCATTGTTTGAGGCCATT+TGG + chr7_1:71798917-71798936 Msa1035810:intron 35.0%
! CACTGCTCTTGTAAATTTTG+TGG + chr7_1:71799384-71799403 Msa1035810:CDS 35.0%
! TTTTGTGGATCCTATCAAGA+AGG + chr7_1:71799399-71799418 Msa1035810:CDS 35.0%
TTCAATCGTGAAAAGTTCTG+TGG + chr7_1:71799781-71799800 Msa1035810:CDS 35.0%
TTTCAAACCTCTGATGTATC+TGG - chr7_1:71800114-71800133 None:intergenic 35.0%
! AGAGGTTTGAAATGCTTCTA+CGG + chr7_1:71800122-71800141 Msa1035810:CDS 35.0%
CTACGGAATAGATATGACAT+TGG + chr7_1:71800139-71800158 Msa1035810:CDS 35.0%
TTTGCGTAGATTACATGAAG+TGG + chr7_1:71800183-71800202 Msa1035810:CDS 35.0%
ACATGAAGTGGAAAACAAGA+AGG + chr7_1:71800195-71800214 Msa1035810:CDS 35.0%
CATGAAGTGGAAAACAAGAA+GGG + chr7_1:71800196-71800215 Msa1035810:CDS 35.0%
AAACCCATTACTTTGGATCT+TGG + chr7_1:71800250-71800269 Msa1035810:CDS 35.0%
AATGGCTACTTAGAATTCTG+GGG - chr7_1:71800297-71800316 None:intergenic 35.0%
CAATGGCTACTTAGAATTCT+GGG - chr7_1:71800298-71800317 None:intergenic 35.0%
ATTCTAAGTAGCCATTGGTA+AGG + chr7_1:71800301-71800320 Msa1035810:intron 35.0%
TGAGTAACCGATAATGTAGA+TGG - chr7_1:71800392-71800411 None:intergenic 35.0%
GGATGAAAATAGGCTAAGTT+GGG + chr7_1:71800463-71800482 Msa1035810:intron 35.0%
! ATCAGGCCTTTAAAAATGCT+AGG - chr7_1:71800582-71800601 None:intergenic 35.0%
TAACATCACAATGATTCGAG+TGG - chr7_1:71801050-71801069 None:intergenic 35.0%
! ATAACATTCGATGTATCGAC+TGG + chr7_1:71801306-71801325 Msa1035810:intron 35.0%
TAGGATTCATGGACATCAAA+TGG + chr7_1:71801584-71801603 Msa1035810:intron 35.0%
CTAACTCGTGTTCCAATAAA+TGG - chr7_1:71801618-71801637 None:intergenic 35.0%
CATTTATTGGAACACGAGTT+AGG + chr7_1:71801616-71801635 Msa1035810:CDS 35.0%
! CAATGGCATTGAAAAGTCTA+CGG - chr7_1:71801662-71801681 None:intergenic 35.0%
! ACTTTTCAATGCCATTGAGT+CGG + chr7_1:71801665-71801684 Msa1035810:CDS 35.0%
GGCATTAAGCTATATGAATG+TGG + chr7_1:71801919-71801938 Msa1035810:intron 35.0%
AGCTTTCTCAAATCCAAAAG+AGG - chr7_1:71801993-71802012 None:intergenic 35.0%
!!! ACATTTTTTCTAGGAGCCAA+TGG + chr7_1:71802167-71802186 Msa1035810:intron 35.0%
!!! CATTTTTTCTAGGAGCCAAT+GGG + chr7_1:71802168-71802187 Msa1035810:intron 35.0%
! TGATTTTCATGTTAGCCCAT+TGG - chr7_1:71802186-71802205 None:intergenic 35.0%
! TTGTTTGAGGCCATTTGGAT+TGG + chr7_1:71798922-71798941 Msa1035810:intron 40.0%
ACTGAAGACACATCCAATAG+CGG - chr7_1:71799436-71799455 None:intergenic 40.0%
AATGCATCATAAAGGTGACG+AGG - chr7_1:71799653-71799672 None:intergenic 40.0%
! GTCAATTGTGTTGATGCCAA+CGG + chr7_1:71799751-71799770 Msa1035810:CDS 40.0%
CTGTGGAAAAAGATGTCAAC+AGG + chr7_1:71799798-71799817 Msa1035810:CDS 40.0%
TGTGTTTCCAGATACATCAG+AGG + chr7_1:71800104-71800123 Msa1035810:intron 40.0%
CCTCCAAGATCCAAAGTAAT+GGG - chr7_1:71800256-71800275 None:intergenic 40.0%
ACCTCCAAGATCCAAAGTAA+TGG - chr7_1:71800257-71800276 None:intergenic 40.0%
CCAATGGCTACTTAGAATTC+TGG - chr7_1:71800299-71800318 None:intergenic 40.0%
CCAGAATTCTAAGTAGCCAT+TGG + chr7_1:71800296-71800315 Msa1035810:CDS 40.0%
! AAAAAGAGTGGCCTTACCAA+TGG - chr7_1:71800315-71800334 None:intergenic 40.0%
CAACATCTCATCTCCTAGTA+GGG + chr7_1:71800442-71800461 Msa1035810:intron 40.0%
CTCCTAGTAGGGATGAAAAT+AGG + chr7_1:71800453-71800472 Msa1035810:intron 40.0%
! AGCCTATTTTCATCCCTACT+AGG - chr7_1:71800458-71800477 None:intergenic 40.0%
GGGATGAAAATAGGCTAAGT+TGG + chr7_1:71800462-71800481 Msa1035810:intron 40.0%
! GAAAATAGGCTAAGTTGGGT+CGG + chr7_1:71800467-71800486 Msa1035810:intron 40.0%
! AAAATAGGCTAAGTTGGGTC+GGG + chr7_1:71800468-71800487 Msa1035810:intron 40.0%
! ATGGCAGAGATGCCATTTAT+TGG + chr7_1:71801603-71801622 Msa1035810:CDS 40.0%
TTGGAACACGAGTTAGGTTT+AGG + chr7_1:71801622-71801641 Msa1035810:CDS 40.0%
CGAGTTAGGTTTAGGAAACA+AGG + chr7_1:71801630-71801649 Msa1035810:CDS 40.0%
AATGCCTGCAGATATATGCA+TGG - chr7_1:71801905-71801924 None:intergenic 40.0%
CTATATGAATGTGGAGATGC+TGG + chr7_1:71801928-71801947 Msa1035810:CDS 40.0%
CAAGACTCAGAAAGCTATCA+AGG + chr7_1:71802404-71802423 Msa1035810:CDS 40.0%
AGAAAGCTATCAAGGAAGAG+CGG + chr7_1:71802412-71802431 Msa1035810:CDS 40.0%
! AGAGAGTCTTGTATTGTCAG+TGG + chr7_1:71802441-71802460 Msa1035810:CDS 40.0%
ATTGTCAGTGGAAGAACTTC+AGG + chr7_1:71802453-71802472 Msa1035810:CDS 40.0%
CGAGCTCCTTGTAATTCATA+TGG - chr7_1:71802498-71802517 None:intergenic 40.0%
GACCTTAATGAGGATGCATG+CGG + chr7_1:71798748-71798767 Msa1035810:CDS 45.0%
GCATGCGGTGTTTGTAAAGA+CGG + chr7_1:71798763-71798782 Msa1035810:CDS 45.0%
! TGGGTGACATTTTCACGAGA+AGG + chr7_1:71799225-71799244 Msa1035810:intron 45.0%
GGAAGTGAAAATCCCGCTAT+TGG + chr7_1:71799420-71799439 Msa1035810:CDS 45.0%
CTGAAGACACATCCAATAGC+GGG - chr7_1:71799435-71799454 None:intergenic 45.0%
ACGATTGAACTCATCACCGT+TGG - chr7_1:71799770-71799789 None:intergenic 45.0%
CCCATTACTTTGGATCTTGG+AGG + chr7_1:71800253-71800272 Msa1035810:CDS 45.0%
CCTACTAGGAGATGAGATGT+TGG - chr7_1:71800444-71800463 None:intergenic 45.0%
CCAACATCTCATCTCCTAGT+AGG + chr7_1:71800441-71800460 Msa1035810:intron 45.0%
!! AAGTTGGGTCGGGTTTTGTA+AGG + chr7_1:71800478-71800497 Msa1035810:intron 45.0%
GAATAGACTAGACTGTAGGC+CGG + chr7_1:71800927-71800946 Msa1035810:intron 45.0%
!! ACATTCGATGTATCGACTGG+TGG + chr7_1:71801309-71801328 Msa1035810:intron 45.0%
ATCCGGCATAATCAACAGCA+CGG - chr7_1:71801413-71801432 None:intergenic 45.0%
! CAATCTGTGTTGCTACTCTC+AGG + chr7_1:71801466-71801485 Msa1035810:CDS 45.0%
!! GTTTGAACTCACCGACTCAA+TGG - chr7_1:71801679-71801698 None:intergenic 45.0%
GCTACCATGCATATATCTGC+AGG + chr7_1:71801898-71801917 Msa1035810:intron 45.0%
! TGTAACACTTGTAGCGCTGA+TGG - chr7_1:71801959-71801978 None:intergenic 45.0%
CGCTACAAGTGTTACACACT+TGG + chr7_1:71801963-71801982 Msa1035810:CDS 45.0%
! CACACTTGGACTTCCTCTTT+TGG + chr7_1:71801977-71801996 Msa1035810:CDS 45.0%
TGTGGTGCAATTCTATGGAG+TGG + chr7_1:71802048-71802067 Msa1035810:CDS 45.0%
!!! ATACTAATTTAATTTAATTT+TGG + chr7_1:71799205-71799224 Msa1035810:intron 5.0%
!!! TACTAATTTAATTTAATTTT+GGG + chr7_1:71799206-71799225 Msa1035810:intron 5.0%
CACCGCATGCATCCTCATTA+AGG - chr7_1:71798753-71798772 None:intergenic 50.0%
TGCGGTGTTTGTAAAGACGG+AGG + chr7_1:71798766-71798785 Msa1035810:CDS 50.0%
GGATCTTGGAGGTGAGAAGA+TGG + chr7_1:71800264-71800283 Msa1035810:CDS 50.0%
! TCCCGTGCTGTTGATTATGC+CGG + chr7_1:71801408-71801427 Msa1035810:CDS 50.0%
TCCGGCATAATCAACAGCAC+GGG - chr7_1:71801412-71801431 None:intergenic 50.0%
TTACAAGGAGCTCGTGAGAG+AGG + chr7_1:71802504-71802523 Msa1035810:CDS 50.0%
TACAAGGAGCTCGTGAGAGA+GGG + chr7_1:71802505-71802524 Msa1035810:CDS 50.0%
ACTAGACTGTAGGCCGGTGT+CGG + chr7_1:71800933-71800952 Msa1035810:intron 55.0%
CATGTCAGACCATCCGACAC+CGG - chr7_1:71800949-71800968 None:intergenic 55.0%
TGCAGTGCCAGTCACCTGCT+GGG - chr7_1:71799362-71799381 None:intergenic 60.0%
ATGCAGTGCCAGTCACCTGC+TGG - chr7_1:71799363-71799382 None:intergenic 60.0%
TCCTTGCAGGAGCTCCCAGC+AGG + chr7_1:71799345-71799364 Msa1035810:intron 65.0%
ACCTGCTGGGAGCTCCTGCA+AGG - chr7_1:71799349-71799368 None:intergenic 65.0%
AGGAGCTCCCAGCAGGTGAC+TGG + chr7_1:71799352-71799371 Msa1035810:intron 65.0%
! GACTGTAGGCCGGTGTCGGA+TGG + chr7_1:71800937-71800956 Msa1035810:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 71798718 71802557 71798718 ID=Msa1035810;Name=Msa1035810
chr7_1 mRNA 71798718 71802557 71798718 ID=Msa1035810-mRNA-1;Parent=Msa1035810;Name=Msa1035810-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|8|0|367
chr7_1 exon 71798718 71798849 71798718 ID=Msa1035810-mRNA-1:exon:17420;Parent=Msa1035810-mRNA-1
chr7_1 exon 71799354 71799480 71799354 ID=Msa1035810-mRNA-1:exon:17421;Parent=Msa1035810-mRNA-1
chr7_1 exon 71799746 71799819 71799746 ID=Msa1035810-mRNA-1:exon:17422;Parent=Msa1035810-mRNA-1
chr7_1 exon 71800115 71800317 71800115 ID=Msa1035810-mRNA-1:exon:17423;Parent=Msa1035810-mRNA-1
chr7_1 exon 71801401 71801487 71801401 ID=Msa1035810-mRNA-1:exon:17424;Parent=Msa1035810-mRNA-1
chr7_1 exon 71801587 71801686 71801587 ID=Msa1035810-mRNA-1:exon:17425;Parent=Msa1035810-mRNA-1
chr7_1 exon 71801920 71802133 71801920 ID=Msa1035810-mRNA-1:exon:17426;Parent=Msa1035810-mRNA-1
chr7_1 exon 71802391 71802557 71802391 ID=Msa1035810-mRNA-1:exon:17427;Parent=Msa1035810-mRNA-1
chr7_1 CDS 71798718 71798849 71798718 ID=Msa1035810-mRNA-1:cds;Parent=Msa1035810-mRNA-1
chr7_1 CDS 71799354 71799480 71799354 ID=Msa1035810-mRNA-1:cds;Parent=Msa1035810-mRNA-1
chr7_1 CDS 71799746 71799819 71799746 ID=Msa1035810-mRNA-1:cds;Parent=Msa1035810-mRNA-1
chr7_1 CDS 71800115 71800317 71800115 ID=Msa1035810-mRNA-1:cds;Parent=Msa1035810-mRNA-1
chr7_1 CDS 71801401 71801487 71801401 ID=Msa1035810-mRNA-1:cds;Parent=Msa1035810-mRNA-1
chr7_1 CDS 71801587 71801686 71801587 ID=Msa1035810-mRNA-1:cds;Parent=Msa1035810-mRNA-1
chr7_1 CDS 71801920 71802133 71801920 ID=Msa1035810-mRNA-1:cds;Parent=Msa1035810-mRNA-1
chr7_1 CDS 71802391 71802557 71802391 ID=Msa1035810-mRNA-1:cds;Parent=Msa1035810-mRNA-1
Gene Sequence

>Msa1035810

ATGGATCTGGAACCTCAAAGAGTGTTTAAAGACCTTAATGAGGATGCATGCGGTGTTTGTAAAGACGGAGGAGACTTGATCTGCTGTGATAGTTGTCCAGCAGTATTTCATCAAAGTTGCCTCAATATTAAAGAGCTCCCAGCAGGTGACTGGCACTGCATTCACTGCTCTTGTAAATTTTGTGGATCCTATCAAGAAGGAAGTGAAAATCCCGCTATTGGATGTGTCTTCAGTGCATGTTTTTCATGCAGAACCAGATATCACGTCAATTGTGTTGATGCCAACGGTGATGAGTTCAATCGTGAAAAGTTCTGTGGAAAAAGATGTCAACAGATACATCAGAGGTTTGAAATGCTTCTACGGAATAGATATGACATTGGAGATGGATTTTCTTGCACATTTTTGCGTAGATTACATGAAGTGGAAAACAAGAAGGGTGTTGCATTATCTGTAATGCATGAGTGTTTTAAACCCATTACTTTGGATCTTGGAGGTGAGAAGATGGACATGTTCCCCAGAATTCTAAGTAGCCATTGGTCAACATCCCGTGCTGTTGATTATGCCGGATTTTTTACTGTATTTCTAGAGAAAGGGGATGATACAATCTGTGTTGCTACTCTCAGGATTCATGGACATCAAATGGCAGAGATGCCATTTATTGGAACACGAGTTAGGTTTAGGAAACAAGGAATGTGCCGTAGACTTTTCAATGCCATTGAGTCGGCATTAAGCTATATGAATGTGGAGATGCTGGTCATTCCATCAGCGCTACAAGTGTTACACACTTGGACTTCCTCTTTTGGATTTGAGAAAGCTGACATGACTACAAAAGAATTGCTGAATAAGAAAAATGTGGTGCAATTCTATGGAGTGGAATTTCTCCAAAAGAAAATAGAAAAGTATAATCTTCCTGAACAAAATCTCACTTTCAATCAAGTCTTCAATTATCACAAGACTCAGAAAGCTATCAAGGAAGAGCGGTCTCTAAGAGAGTCTTGTATTGTCAGTGGAAGAACTTCAGGTCGCAGAAGACGAAGTTCTCCATATGAATTACAAGGAGCTCGTGAGAGAGGGAGTTCATCAAAATCAACGCCCGATTGTTGA

Protein sequence

>Msa1035810

MDLEPQRVFKDLNEDACGVCKDGGDLICCDSCPAVFHQSCLNIKELPAGDWHCIHCSCKFCGSYQEGSENPAIGCVFSACFSCRTRYHVNCVDANGDEFNREKFCGKRCQQIHQRFEMLLRNRYDIGDGFSCTFLRRLHEVENKKGVALSVMHECFKPITLDLGGEKMDMFPRILSSHWSTSRAVDYAGFFTVFLEKGDDTICVATLRIHGHQMAEMPFIGTRVRFRKQGMCRRLFNAIESALSYMNVEMLVIPSALQVLHTWTSSFGFEKADMTTKELLNKKNVVQFYGVEFLQKKIEKYNLPEQNLTFNQVFNYHKTQKAIKEERSLRESCIVSGRTSGRRRRSSPYELQGARERGSSSKSTPDC*