AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1036850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1036850 MtrunA17_Chr7g0261401 89.913 575 51 3 1 572 1 571 0.0 1068
Msa1036850 MtrunA17_Chr1g0189211 44.881 586 281 10 3 567 20 584 4.50e-159 486
Msa1036850 MtrunA17_Chr2g0303101 45.493 477 241 8 99 573 34 493 1.82e-119 377
Msa1036850 MtrunA17_Chr8g0380981 42.105 475 260 6 99 573 25 484 1.80e-115 367
Msa1036850 MtrunA17_Chr5g0397501 32.464 345 188 8 239 571 301 612 1.67e-43 167
Msa1036850 MtrunA17_Chr5g0397501 45.349 86 41 2 117 202 28 107 4.90e-13 72.4
Msa1036850 MtrunA17_Chr3g0116441 26.834 477 253 8 117 571 18 420 1.15e-37 149
Msa1036850 MtrunA17_Chr1g0164731 27.273 418 220 9 113 524 41 380 1.66e-33 135
Msa1036850 MtrunA17_Chr5g0410721 33.696 184 118 1 341 520 237 420 3.31e-30 126
Msa1036850 MtrunA17_Chr1g0199511 35.196 179 114 2 343 520 297 474 1.00e-27 119
Msa1036850 MtrunA17_Chr1g0164761 35.625 160 99 1 369 524 166 325 1.86e-24 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1036850 AT1G08620.2 43.932 585 299 11 5 571 19 592 1.21e-136 427
Msa1036850 AT1G08620.4 43.932 585 299 11 5 571 19 592 1.21e-136 427
Msa1036850 AT1G08620.1 43.932 585 299 11 5 571 19 592 1.21e-136 427
Msa1036850 AT1G08620.3 43.932 585 299 11 5 571 33 606 1.32e-136 427
Msa1036850 AT4G20400.1 42.977 477 256 5 99 575 38 498 5.26e-122 383
Msa1036850 AT1G30810.3 41.393 517 273 8 57 572 7 494 2.18e-120 375
Msa1036850 AT1G30810.2 41.393 517 273 8 57 572 7 494 2.18e-120 375
Msa1036850 AT1G30810.1 41.393 517 273 8 57 572 7 494 2.18e-120 375
Msa1036850 AT2G34880.1 41.373 510 261 11 73 575 15 493 1.55e-115 362
Msa1036850 AT4G20400.2 42.129 451 245 5 125 575 7 441 2.81e-110 350
Msa1036850 AT2G38950.1 37.716 578 282 13 5 576 19 524 1.25e-109 344
Msa1036850 AT1G63490.2 35.294 289 163 5 239 525 298 564 3.25e-45 172
Msa1036850 AT1G63490.2 43.023 86 43 2 117 202 31 110 3.08e-12 70.5
Msa1036850 AT1G63490.4 35.294 289 163 5 239 525 298 564 3.31e-45 172
Msa1036850 AT1G63490.4 43.023 86 43 2 117 202 31 110 3.11e-12 70.5
Msa1036850 AT1G63490.1 35.294 289 163 5 239 525 45 311 3.39e-45 172
Msa1036850 AT5G46910.2 32.328 232 138 4 293 520 218 434 1.92e-30 126
Msa1036850 AT5G46910.1 32.328 232 138 4 293 520 218 434 2.33e-30 127
Msa1036850 AT5G04240.1 34.694 196 126 2 326 520 248 442 2.93e-30 127
Msa1036850 AT3G48430.1 35.371 229 144 3 342 569 205 430 5.48e-29 123
Msa1036850 AT1G63490.3 38.384 99 61 0 427 525 7 105 1.08e-16 84.3

Find 155 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAAACAATTACTGCATTT+TGG 0.161845 7_1:-73325525 None:intergenic
GAAAATTTCTGTGCAGCTTC+AGG 0.197788 7_1:-73326695 None:intergenic
CATCCAGATTTCAAATATTC+AGG 0.203019 7_1:-73326620 None:intergenic
TAAGGATAAGAATAAGATTA+TGG 0.215631 7_1:+73326301 Msa1036850:CDS
AAAAGTACTTCAACTAATAA+TGG 0.231367 7_1:+73326176 Msa1036850:CDS
GGAACACTTGCCGCGATTTC+CGG 0.234969 7_1:-73323379 None:intergenic
CTTCCAAAAGGGACCAAATA+TGG 0.238729 7_1:+73325498 Msa1036850:CDS
CTGTTGACTTTGAAACAATT+TGG 0.245122 7_1:+73326953 Msa1036850:CDS
CTCATTATATTACATGCATT+TGG 0.245461 7_1:+73326891 Msa1036850:CDS
GAGTTTGTTCTCGTCTTTCC+TGG 0.259560 7_1:+73328029 Msa1036850:CDS
CATCCATATTTGGTCCCTTT+TGG 0.264250 7_1:-73325501 None:intergenic
CCTCTTGAGTGGTTGCTTCA+TGG 0.276894 7_1:+73328110 Msa1036850:CDS
GCATCCTCCTATGACTAAAT+TGG 0.292585 7_1:+73324315 Msa1036850:CDS
CAAGATTCCATTTCTTTGAT+AGG 0.293387 7_1:-73328288 None:intergenic
TCTTCTGTTGGACGGAAAAT+AGG 0.293809 7_1:-73325687 None:intergenic
TATCCTGAATATTTGAAATC+TGG 0.307869 7_1:+73326617 Msa1036850:CDS
AAAATTACCAATTTAGTCAT+AGG 0.309535 7_1:-73324322 None:intergenic
GGATGCAAGAAGAGAAGTTC+TGG 0.317535 7_1:+73325656 Msa1036850:CDS
TGTCATCGAATCTAGGATTT+AGG 0.320120 7_1:-73328340 None:intergenic
TTCATACGACAAGCTGTTAC+TGG 0.325874 7_1:+73328181 Msa1036850:CDS
TTTCCTGGAACATATCATTC+AGG 0.336680 7_1:+73328044 Msa1036850:CDS
TTCTCTTCTGTTCACTATAT+AGG 0.352412 7_1:-73328148 None:intergenic
TGTAATATAATGAGTATAAT+TGG 0.352936 7_1:-73326882 None:intergenic
GATCCAGTACTTCAACTATA+AGG 0.361511 7_1:+73326283 Msa1036850:CDS
GGATCAGAAATCGCTGGAAT+TGG 0.361921 7_1:-73326578 None:intergenic
AGTGACAAAGTCTGCCCTTA+AGG 0.363924 7_1:+73323428 Msa1036850:five_prime_UTR
TCATTATATTACATGCATTT+GGG 0.367391 7_1:+73326892 Msa1036850:CDS
CTCCCATTGCTGTTGATGTC+TGG 0.368048 7_1:-73326342 None:intergenic
CGTTCCGAAGCAGAACCTTA+TGG 0.368325 7_1:+73325927 Msa1036850:CDS
ATCTTTACATGTTATGTTGT+CGG 0.370917 7_1:-73328264 None:intergenic
AAGTCAACAGAACATCTTCC+TGG 0.381852 7_1:-73326940 None:intergenic
CACATTCCCACTTGTACCTT+AGG 0.386328 7_1:-73326719 None:intergenic
CGTTGCCCTGGAAAACCTTA+AGG 0.387172 7_1:-73323443 None:intergenic
TGGGACACCATACCATACTT+TGG 0.389184 7_1:-73326920 None:intergenic
TGCTGTGACACTTTGGAGGC+TGG 0.391434 7_1:+73326536 Msa1036850:CDS
GCTCAAATTCAGCGAATTGA+TGG 0.393112 7_1:+73326035 Msa1036850:CDS
AAAGATGCCTATCAAAGAAA+TGG 0.403031 7_1:+73328281 Msa1036850:CDS
AAAGTACTTCAACTAATAAT+GGG 0.403187 7_1:+73326177 Msa1036850:CDS
TAAATGATGTCATCGAATCT+AGG 0.407906 7_1:-73328347 None:intergenic
AAGGATAAGAATAAGATTAT+GGG 0.410951 7_1:+73326302 Msa1036850:CDS
ATTTGGGTGAACCCAAAGTA+TGG 0.415501 7_1:+73326908 Msa1036850:CDS
GGGACACCATACCATACTTT+GGG 0.416059 7_1:-73326919 None:intergenic
TATCCTTATAGTTGAAGTAC+TGG 0.420342 7_1:-73326286 None:intergenic
GCGAGATATGCATGATAATC+TGG 0.420707 7_1:+73327017 Msa1036850:CDS
TTTGGAAGAGAACACTTTGT+AGG 0.423810 7_1:-73325483 None:intergenic
TGTGCTCTTCATACATATAT+CGG 0.424711 7_1:-73328240 None:intergenic
TCTTTACATGTTATGTTGTC+GGG 0.425268 7_1:-73328263 None:intergenic
AATCCTGAATGATATGTTCC+AGG 0.433145 7_1:-73328047 None:intergenic
CTTCCGGTGCATACTGAACT+TGG 0.435200 7_1:-73326061 None:intergenic
TATACCTCAATTTCATCAGT+TGG 0.436860 7_1:-73326413 None:intergenic
AAAATTTCTGTGCAGCTTCA+GGG 0.440051 7_1:-73326694 None:intergenic
CCTCAGGTTTACACTTGCTC+TGG 0.440237 7_1:-73324279 None:intergenic
ACATTCCCACTTGTACCTTA+GGG 0.442517 7_1:-73326718 None:intergenic
ACATATATCGGTTTCCCATC+GGG 0.442559 7_1:-73328228 None:intergenic
TTGGAAGAGAACACTTTGTA+GGG 0.454423 7_1:-73325482 None:intergenic
TGCTCAGTGCGTGATTCCTC+AGG 0.460517 7_1:-73324295 None:intergenic
TTAGGACCAGGCTCAGGCTC+GGG 0.461474 7_1:-73326155 None:intergenic
CAGGGCTTTCAAAGGAAAGA+AGG 0.461553 7_1:-73326676 None:intergenic
AAAGGATGACAATGTTAAGT+TGG 0.462411 7_1:+73324168 Msa1036850:CDS
GAAGTATTGCCATCCATCTC+AGG 0.463056 7_1:-73324214 None:intergenic
GGTTCTCTGCTGTGACACTT+TGG 0.464231 7_1:+73326529 Msa1036850:intron
GTTATCCTGCTCAGTATTGA+AGG 0.465862 7_1:+73327965 Msa1036850:CDS
ACAAAGTGTTCTCTTCCAAA+AGG 0.471003 7_1:+73325486 Msa1036850:CDS
AAGGAGCCCGAGCCTGAGCC+TGG 0.473613 7_1:+73326149 Msa1036850:CDS
AATAATATGCGTTCACTCCC+AGG 0.476422 7_1:+73326650 Msa1036850:CDS
ACTTCTCTTCTTGCATCCTC+AGG 0.476635 7_1:-73325651 None:intergenic
TGTGACAAGGAGCCTGAGCC+TGG 0.477456 7_1:+73326212 Msa1036850:CDS
TTTAGGACCAGGCTCAGGCT+CGG 0.479497 7_1:-73326156 None:intergenic
AGCCAGACATCAACAGCAAT+GGG 0.484436 7_1:+73326340 Msa1036850:CDS
GATTTCCGGCTAGTTTAGTT+CGG 0.485664 7_1:-73323365 None:intergenic
AGCTAGTAGGAGGGACAATA+CGG 0.495876 7_1:-73325956 None:intergenic
GTTGCCCTGGAAAACCTTAA+GGG 0.503945 7_1:-73323442 None:intergenic
AAATCCAACTGATGAAATTG+AGG 0.504435 7_1:+73326409 Msa1036850:CDS
TACATATATCGGTTTCCCAT+CGG 0.505837 7_1:-73328229 None:intergenic
CTCTCCCTTCAATACTGAGC+AGG 0.508006 7_1:-73327970 None:intergenic
TCTCTGCTGTGACACTTTGG+AGG 0.508464 7_1:+73326532 Msa1036850:CDS
GCTGTTACTGGGAGCAGCTA+GGG 0.511571 7_1:+73328193 Msa1036850:CDS
CTCAAATTCAGCGAATTGAT+GGG 0.516662 7_1:+73326036 Msa1036850:CDS
GCCATCTGTTGAGAATATAG+AGG 0.523531 7_1:+73326364 Msa1036850:CDS
AATTCCATAAGGTTCTGCTT+CGG 0.530224 7_1:-73325931 None:intergenic
CAAAGTGTTCTCTTCCAAAA+GGG 0.531336 7_1:+73325487 Msa1036850:CDS
ATCTCAGGTTTAGTCGATGT+GGG 0.531947 7_1:-73324199 None:intergenic
TGAGAGCTAGTCATAACTTC+CGG 0.532651 7_1:-73326077 None:intergenic
GACTTTGTCACTGTATGTGT+TGG 0.534826 7_1:-73323417 None:intergenic
AAAGTATGGTATGGTGTCCC+AGG 0.535009 7_1:+73326922 Msa1036850:CDS
GGCGGTTTCCAGCTAGTAGG+AGG 0.535578 7_1:-73325966 None:intergenic
CCCTCTATATTCTCAACAGA+TGG 0.536625 7_1:-73326365 None:intergenic
ATTACCAATTTAGTCATAGG+AGG 0.537272 7_1:-73324319 None:intergenic
GTATTGTCCCTCCTACTAGC+TGG 0.537758 7_1:+73325958 Msa1036850:CDS
CTGAATATTTGAAATCTGGA+TGG 0.539190 7_1:+73326621 Msa1036850:CDS
CTCTGGTCGGATATTATCCA+TGG 0.540007 7_1:-73324262 None:intergenic
TATCATTCAGGATTTGATTG+TGG 0.542048 7_1:+73328056 Msa1036850:CDS
GTGGTAGGTACCTCTTCTGT+TGG 0.542721 7_1:-73325699 None:intergenic
GATGTTAGGGATGCAAAACC+AGG 0.542783 7_1:-73324133 None:intergenic
TCAAAGGAAAGAAGGGAACC+TGG 0.544303 7_1:-73326668 None:intergenic
CTGAATTTAGGACCAGGCTC+AGG 0.547456 7_1:-73326224 None:intergenic
TGCAGCTTCAGGGCTTTCAA+AGG 0.550194 7_1:-73326684 None:intergenic
ACAATACGGCAAATTCCATA+AGG 0.551943 7_1:-73325942 None:intergenic
AGCTGTTACTGGGAGCAGCT+AGG 0.552409 7_1:+73328192 Msa1036850:CDS
TGGAAGAGAACACTTTGTAG+GGG 0.556256 7_1:-73325481 None:intergenic
TTCAGAGGATCAGAAATCGC+TGG 0.559363 7_1:-73326584 None:intergenic
CAGCCAGACATCAACAGCAA+TGG 0.559438 7_1:+73326339 Msa1036850:CDS
TCATACGACAAGCTGTTACT+GGG 0.559948 7_1:+73328182 Msa1036850:CDS
AGCGATTTCTGATCCTCTGA+AGG 0.565492 7_1:+73326586 Msa1036850:CDS
AGGGCTTTCAAAGGAAAGAA+GGG 0.568025 7_1:-73326675 None:intergenic
TTTGTCACTGTATGTGTTGG+TGG 0.574045 7_1:-73323414 None:intergenic
CATCTCAGGTTTAGTCGATG+TGG 0.575846 7_1:-73324200 None:intergenic
CACATCGACTAAACCTGAGA+TGG 0.577188 7_1:+73324201 Msa1036850:CDS
TCACTGTATGTGTTGGTGGA+CGG 0.578934 7_1:-73323410 None:intergenic
ATTTGGAAGAAGTATCTCGT+TGG 0.581237 7_1:+73326970 Msa1036850:CDS
AGTCAACAGAACATCTTCCT+GGG 0.584474 7_1:-73326939 None:intergenic
TGCTCAGTATTGAAGGGAGA+GGG 0.585190 7_1:+73327972 Msa1036850:CDS
CCATGAAGCAACCACTCAAG+AGG 0.586905 7_1:-73328110 None:intergenic
GGATAAGTGCATGCCTTCAG+AGG 0.587408 7_1:-73326599 None:intergenic
TGTTGGTGGACGGACGGAGG+AGG 0.589500 7_1:-73323400 None:intergenic
CATGGCGGTTTCCAGCTAGT+AGG 0.590626 7_1:-73325969 None:intergenic
AGGTTTACACTTGCTCTGGT+CGG 0.593874 7_1:-73324275 None:intergenic
CTGCTCAGTATTGAAGGGAG+AGG 0.597882 7_1:+73327971 Msa1036850:CDS
AGCTCTGATCTGCTGCGACG+CGG 0.599973 7_1:-73323476 None:intergenic
CCTACCTGTGTTGTCAATGT+CGG 0.600822 7_1:-73323510 None:intergenic
TACTGAATACACCGATACAC+TGG 0.607962 7_1:-73327999 None:intergenic
TGCAAAACCAGGCGGAATCG+AGG 0.610417 7_1:-73324122 None:intergenic
AGATTTGTGCACTACGGCCA+TGG 0.610861 7_1:+73324245 Msa1036850:CDS
TTGAGACTGAATTTAGGACC+AGG 0.613583 7_1:-73326230 None:intergenic
CAAAGGAAAGAAGGGAACCT+GGG 0.616535 7_1:-73326667 None:intergenic
TCTCACCGAACTAAACTAGC+CGG 0.619354 7_1:+73323360 Msa1036850:five_prime_UTR
TACTTCAACTAATAATGGGA+AGG 0.620636 7_1:+73326181 Msa1036850:CDS
GAGAGGGTATACCAGTGTAT+CGG 0.623299 7_1:+73327988 Msa1036850:CDS
GATGAAAGTAGCCACGGACA+AGG 0.625493 7_1:+73326130 Msa1036850:CDS
CCATCTGTTGAGAATATAGA+GGG 0.626894 7_1:+73326365 Msa1036850:CDS
TTGTGGTTTCAACTGTTCTG+AGG 0.627086 7_1:+73328073 Msa1036850:CDS
GGAAGCTGTGAGGACCCGAT+GGG 0.628302 7_1:+73328214 Msa1036850:CDS
GCACCAAGTTCAGTATGCAC+CGG 0.628932 7_1:+73326058 Msa1036850:CDS
TTATCCTGCTCAGTATTGAA+GGG 0.633909 7_1:+73327966 Msa1036850:CDS
TCGACTAAACCTGAGATGGA+TGG 0.637166 7_1:+73324205 Msa1036850:CDS
GGAAGAGAACACTTTGTAGG+GGG 0.638236 7_1:-73325480 None:intergenic
TAGGTACCTCTTCTGTTGGA+CGG 0.638827 7_1:-73325695 None:intergenic
TGTATGTGTTGGTGGACGGA+CGG 0.641257 7_1:-73323406 None:intergenic
TCTCAGGTTTAGTCGATGTG+GGG 0.642919 7_1:-73324198 None:intergenic
AAAAGTGATGAAAGTAGCCA+CGG 0.644146 7_1:+73326124 Msa1036850:CDS
ACTAAACTAGCCGGAAATCG+CGG 0.644709 7_1:+73323369 Msa1036850:five_prime_UTR
CATTCCCACTTGTACCTTAG+GGG 0.645968 7_1:-73326717 None:intergenic
GGTGAACCCAAAGTATGGTA+TGG 0.647828 7_1:+73326913 Msa1036850:CDS
ATAAACAGATTTGTGCACTA+CGG 0.655577 7_1:+73324239 Msa1036850:CDS
GCGGTTTCCAGCTAGTAGGA+GGG 0.665415 7_1:-73325965 None:intergenic
TGCACCGACATTGACAACAC+AGG 0.679889 7_1:+73323506 Msa1036850:five_prime_UTR
ATGTGTTGGTGGACGGACGG+AGG 0.692868 7_1:-73323403 None:intergenic
CCAGAGCAAGTGTAAACCTG+AGG 0.693815 7_1:+73324279 Msa1036850:CDS
TCTTGAACCAGGTAACAGCA+AGG 0.702176 7_1:+73325622 Msa1036850:intron
GTTAGGGATGCAAAACCAGG+CGG 0.712509 7_1:-73324130 None:intergenic
AATGACATTACCCATCTGAG+TGG 0.716909 7_1:-73326749 None:intergenic
GAAGGTTAAAGACTGTGACA+AGG 0.732117 7_1:+73326199 Msa1036850:CDS
AAGACGAGAACAAACTCACG+AGG 0.738303 7_1:-73328023 None:intergenic
TGAACCAGGTAACAGCAAGG+TGG 0.748113 7_1:+73325625 Msa1036850:intron
GAGCAGCTAGGGAAGCTGTG+AGG 0.761413 7_1:+73328204 Msa1036850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTGTAAAATTTGATTT+CGG + chr7_1:73323682-73323701 Msa1036850:intron 10.0%
!!! TTTTTAATATCATATTTGAT+TGG + chr7_1:73324030-73324049 Msa1036850:intron 10.0%
!!! ATTCTTAATTTTATTTAACA+CGG - chr7_1:73325300-73325319 None:intergenic 10.0%
!! CTTAAATATAAAAAAACAAA+TGG - chr7_1:73327116-73327135 None:intergenic 10.0%
!! AAAGTTTAATACTATAAATA+AGG - chr7_1:73327554-73327573 None:intergenic 10.0%
!! TAATGAAAATAGTAGTAAAT+AGG - chr7_1:73323565-73323584 None:intergenic 15.0%
!!! TAAAAATAACTTTTAGAATG+TGG + chr7_1:73323780-73323799 Msa1036850:intron 15.0%
!!! AAAAATAACTTTTAGAATGT+GGG + chr7_1:73323781-73323800 Msa1036850:intron 15.0%
!! ATAATTATCTATGAATATCA+GGG - chr7_1:73323831-73323850 None:intergenic 15.0%
!! AATAATTATCTATGAATATC+AGG - chr7_1:73323832-73323851 None:intergenic 15.0%
!!! TGTTATTCATTTTATGTTTA+TGG + chr7_1:73323977-73323996 Msa1036850:intron 15.0%
!!! TTTTAGATAAAAAGATGTTA+GGG - chr7_1:73324149-73324168 None:intergenic 15.0%
!!! TTTTTAGATAAAAAGATGTT+AGG - chr7_1:73324150-73324169 None:intergenic 15.0%
!!! AACATCTTTTTATCTAAAAA+AGG + chr7_1:73324150-73324169 Msa1036850:CDS 15.0%
!!! TTGGTAATTTTCAATTTTTT+TGG + chr7_1:73324334-73324353 Msa1036850:intron 15.0%
!!! CATATATTTTTTCAAGAATT+TGG + chr7_1:73324698-73324717 Msa1036850:intron 15.0%
!! AGAAAGTAATAAATAGTTAA+GGG + chr7_1:73324928-73324947 Msa1036850:intron 15.0%
!! TGTAATATAATGAGTATAAT+TGG - chr7_1:73326885-73326904 None:intergenic 15.0%
!! AAAATTACCAATTTAGTCAT+AGG - chr7_1:73324325-73324344 None:intergenic 20.0%
!! ACCAAAACAACTTATAATTA+GGG - chr7_1:73324790-73324809 None:intergenic 20.0%
!! GAGAAAGTAATAAATAGTTA+AGG + chr7_1:73324927-73324946 Msa1036850:intron 20.0%
!! ATATTGAACGACATATAATT+TGG + chr7_1:73324967-73324986 Msa1036850:intron 20.0%
!! TATTGAACGACATATAATTT+GGG + chr7_1:73324968-73324987 Msa1036850:intron 20.0%
!!! TTAAAACAATTACTGCATTT+TGG - chr7_1:73325528-73325547 None:intergenic 20.0%
!!! AAAATGCAGTAATTGTTTTA+AGG + chr7_1:73325527-73325546 Msa1036850:CDS 20.0%
!! TATAAATAAACAACCAAAAG+TGG - chr7_1:73325598-73325617 None:intergenic 20.0%
!! ATTTATATAAATCTTGAACC+AGG + chr7_1:73325611-73325630 Msa1036850:intron 20.0%
!! TACAATTGAATACATTATCA+AGG + chr7_1:73325815-73325834 Msa1036850:intron 20.0%
!! TCAAAGAAACTTAAATAATG+TGG + chr7_1:73325841-73325860 Msa1036850:intron 20.0%
!! TTAAATAATGTGGATTCATA+TGG + chr7_1:73325851-73325870 Msa1036850:intron 20.0%
!! TCTTGAAAAAAAGAATGTAT+GGG + chr7_1:73325995-73326014 Msa1036850:CDS 20.0%
!!! TTATTAGTTGAAGTACTTTT+AGG - chr7_1:73326176-73326195 None:intergenic 20.0%
!!! AAAAGTACTTCAACTAATAA+TGG + chr7_1:73326176-73326195 Msa1036850:CDS 20.0%
!!! AAAGTACTTCAACTAATAAT+GGG + chr7_1:73326177-73326196 Msa1036850:CDS 20.0%
!!! TCTCAAAACTTTTAAGAAAT+TGG + chr7_1:73326247-73326266 Msa1036850:CDS 20.0%
!! TAAGGATAAGAATAAGATTA+TGG + chr7_1:73326301-73326320 Msa1036850:CDS 20.0%
!! AAGGATAAGAATAAGATTAT+GGG + chr7_1:73326302-73326321 Msa1036850:CDS 20.0%
!!! AATATTTTCACAACTTATCA+AGG - chr7_1:73326485-73326504 None:intergenic 20.0%
!! TCATTATATTACATGCATTT+GGG + chr7_1:73326892-73326911 Msa1036850:CDS 20.0%
!!! ATATCATATCATTGATTAGA+TGG + chr7_1:73327182-73327201 Msa1036850:intron 20.0%
!! AAAATTATGGCATTAAAACA+TGG - chr7_1:73327302-73327321 None:intergenic 20.0%
!! TCCAAATTCATGAAAAATTA+TGG - chr7_1:73327315-73327334 None:intergenic 20.0%
!! ATTATCATTCCTTCAAATTT+GGG - chr7_1:73327413-73327432 None:intergenic 20.0%
!! AATTATCATTCCTTCAAATT+TGG - chr7_1:73327414-73327433 None:intergenic 20.0%
!! GTATTAAACTTTAGATGTAA+TGG + chr7_1:73327562-73327581 Msa1036850:intron 20.0%
!! TAAATACAACCAAAGAATAT+TGG - chr7_1:73327735-73327754 None:intergenic 20.0%
!!! TTTGGTTGTATTTATTCTTT+TGG + chr7_1:73327741-73327760 Msa1036850:intron 20.0%
!!! TGATTCTTAGTTTGAATATT+TGG + chr7_1:73327929-73327948 Msa1036850:intron 20.0%
!!! GTTTTTTTTTGTGTGTTTGA+TGG - chr7_1:73323336-73323355 None:intergenic 25.0%
!!! AGGATACTAAATTTAGTTCT+TGG + chr7_1:73323530-73323549 Msa1036850:intron 25.0%
!!! TCAAGAATTTGGTTTGAATA+AGG + chr7_1:73324709-73324728 Msa1036850:intron 25.0%
! TATCTAAGTGTGTATTCTAT+CGG - chr7_1:73324754-73324773 None:intergenic 25.0%
! AAACAACTTATAATTAGGGA+CGG - chr7_1:73324786-73324805 None:intergenic 25.0%
!! TCCCTAATTATAAGTTGTTT+TGG + chr7_1:73324786-73324805 Msa1036850:intron 25.0%
! GACCAAAACAACTTATAATT+AGG - chr7_1:73324791-73324810 None:intergenic 25.0%
! ATGAAATGCAATTAACTCTA+TGG + chr7_1:73324825-73324844 Msa1036850:intron 25.0%
! TGAAATGCAATTAACTCTAT+GGG + chr7_1:73324826-73324845 Msa1036850:intron 25.0%
! ACGAAATTGTCCTTAATAAA+TGG + chr7_1:73324872-73324891 Msa1036850:intron 25.0%
! ATTGTCCTTAATAAATGGTA+TGG + chr7_1:73324877-73324896 Msa1036850:intron 25.0%
! TTGTCCTTAATAAATGGTAT+GGG + chr7_1:73324878-73324897 Msa1036850:intron 25.0%
!!! AAACACATAAAAGTTTGCTA+CGG - chr7_1:73325073-73325092 None:intergenic 25.0%
! TAAGAACTTAGAAGTTAGAT+AGG + chr7_1:73325221-73325240 Msa1036850:intron 25.0%
!!! AATTTTATTTAACACGGAAC+AGG - chr7_1:73325294-73325313 None:intergenic 25.0%
! GAATTAGTACTCTTTGAATT+TGG - chr7_1:73325323-73325342 None:intergenic 25.0%
! TATAGTAATATGGAAAGTTC+AGG - chr7_1:73325568-73325587 None:intergenic 25.0%
! TTGATTTATGTCATCAAATG+TGG + chr7_1:73325769-73325788 Msa1036850:intron 25.0%
!!! TTCTTTTTTTCAAGAGTACA+TGG - chr7_1:73325990-73326009 None:intergenic 25.0%
! CTCTTGAAAAAAAGAATGTA+TGG + chr7_1:73325994-73326013 Msa1036850:CDS 25.0%
!!! AAAGTTTTGAGACTGAATTT+AGG - chr7_1:73326239-73326258 None:intergenic 25.0%
! TCAAGGACTAAAATTATAGA+AGG - chr7_1:73326468-73326487 None:intergenic 25.0%
!! TATCCTGAATATTTGAAATC+TGG + chr7_1:73326617-73326636 Msa1036850:CDS 25.0%
!! GTTTTGTCAAATGATTATGA+AGG - chr7_1:73326846-73326865 None:intergenic 25.0%
! CTCATTATATTACATGCATT+TGG + chr7_1:73326891-73326910 Msa1036850:CDS 25.0%
! TTCCAGAAATAGTAATAGTT+GGG - chr7_1:73327263-73327282 None:intergenic 25.0%
!! GCCATAATTTTTCATGAATT+TGG + chr7_1:73327311-73327330 Msa1036850:intron 25.0%
!!! TCTAAGAGGAATTTTATTTG+TGG + chr7_1:73327505-73327524 Msa1036850:intron 25.0%
! GTAATGACATGAAATATAAG+AGG + chr7_1:73327858-73327877 Msa1036850:intron 25.0%
!! TTAGTTTGAATATTTGGTAC+AGG + chr7_1:73327935-73327954 Msa1036850:intron 25.0%
! ATCTTTACATGTTATGTTGT+CGG - chr7_1:73328267-73328286 None:intergenic 25.0%
TAGCATACACAAGAAAAATG+TGG - chr7_1:73323595-73323614 None:intergenic 30.0%
AAAGGATGACAATGTTAAGT+TGG + chr7_1:73324168-73324187 Msa1036850:CDS 30.0%
ATAAACAGATTTGTGCACTA+CGG + chr7_1:73324239-73324258 Msa1036850:CDS 30.0%
ATTACCAATTTAGTCATAGG+AGG - chr7_1:73324322-73324341 None:intergenic 30.0%
CATTTCAGACTCAATATTCT+GGG - chr7_1:73324373-73324392 None:intergenic 30.0%
TCATTTCAGACTCAATATTC+TGG - chr7_1:73324374-73324393 None:intergenic 30.0%
!!! AGCAACACTGATTTTTCAAA+TGG - chr7_1:73324446-73324465 None:intergenic 30.0%
CTTTCCCATACCATTTATTA+AGG - chr7_1:73324885-73324904 None:intergenic 30.0%
!! AACACATAAAAGTTTGCTAC+GGG - chr7_1:73325072-73325091 None:intergenic 30.0%
ATATGTCCAGTTATGTTTGA+CGG + chr7_1:73325124-73325143 Msa1036850:intron 30.0%
AGTTAAAGATAACTGCATTC+AGG + chr7_1:73325247-73325266 Msa1036850:intron 30.0%
GTATGAAGGCAAAATAACTA+TGG + chr7_1:73325431-73325450 Msa1036850:intron 30.0%
TGGTCATCTCTATAGTAATA+TGG - chr7_1:73325578-73325597 None:intergenic 30.0%
!!! TTTTTTTCAAGAGTACATGG+CGG - chr7_1:73325987-73326006 None:intergenic 30.0%
!! TTTCATCACTTTTCTTCTCT+TGG - chr7_1:73326117-73326136 None:intergenic 30.0%
! TACTTCAACTAATAATGGGA+AGG + chr7_1:73326181-73326200 Msa1036850:CDS 30.0%
TATCCTTATAGTTGAAGTAC+TGG - chr7_1:73326289-73326308 None:intergenic 30.0%
AAATCCAACTGATGAAATTG+AGG + chr7_1:73326409-73326428 Msa1036850:CDS 30.0%
TATACCTCAATTTCATCAGT+TGG - chr7_1:73326416-73326435 None:intergenic 30.0%
CATCCAGATTTCAAATATTC+AGG - chr7_1:73326623-73326642 None:intergenic 30.0%
! CTGAATATTTGAAATCTGGA+TGG + chr7_1:73326621-73326640 Msa1036850:CDS 30.0%
TAGTAATCAGGAGATTCATT+AGG - chr7_1:73326822-73326841 None:intergenic 30.0%
GATTATGAAGGATAGTAATC+AGG - chr7_1:73326834-73326853 None:intergenic 30.0%
!! CTGTTGACTTTGAAACAATT+TGG + chr7_1:73326953-73326972 Msa1036850:CDS 30.0%
TTATCATTGAAAAGTGACAG+TGG + chr7_1:73327076-73327095 Msa1036850:intron 30.0%
GTTCCAGAAATAGTAATAGT+TGG - chr7_1:73327264-73327283 None:intergenic 30.0%
! TAGTTGATTCCCAAATTTGA+AGG + chr7_1:73327401-73327420 Msa1036850:intron 30.0%
TTCATCAACTGAAACTCAAT+TGG + chr7_1:73327448-73327467 Msa1036850:intron 30.0%
TCATCAACTGAAACTCAATT+GGG + chr7_1:73327449-73327468 Msa1036850:intron 30.0%
! TTTAAGCTTTTTACTGAAGC+GGG - chr7_1:73327695-73327714 None:intergenic 30.0%
! GTTTAAGCTTTTTACTGAAG+CGG - chr7_1:73327696-73327715 None:intergenic 30.0%
AATATTGGAAGCTGAAGTAA+AGG - chr7_1:73327720-73327739 None:intergenic 30.0%
! TACAGTTCTTTTAGTACACA+AGG + chr7_1:73327883-73327902 Msa1036850:intron 30.0%
! ACAGTTCTTTTAGTACACAA+GGG + chr7_1:73327884-73327903 Msa1036850:intron 30.0%
TATCATTCAGGATTTGATTG+TGG + chr7_1:73328056-73328075 Msa1036850:CDS 30.0%
TTCTCTTCTGTTCACTATAT+AGG - chr7_1:73328151-73328170 None:intergenic 30.0%
TGTGCTCTTCATACATATAT+CGG - chr7_1:73328243-73328262 None:intergenic 30.0%
TCTTTACATGTTATGTTGTC+GGG - chr7_1:73328266-73328285 None:intergenic 30.0%
AAAGATGCCTATCAAAGAAA+TGG + chr7_1:73328281-73328300 Msa1036850:CDS 30.0%
CAAGATTCCATTTCTTTGAT+AGG - chr7_1:73328291-73328310 None:intergenic 30.0%
TAAATGATGTCATCGAATCT+AGG - chr7_1:73328350-73328369 None:intergenic 30.0%
GATGTGACACTTAACATGAA+CGG - chr7_1:73323862-73323881 None:intergenic 35.0%
GAGATGCATTAGCAAAAGTA+CGG + chr7_1:73324392-73324411 Msa1036850:intron 35.0%
TATCAATTGTTCAGGTGTCT+TGG - chr7_1:73324498-73324517 None:intergenic 35.0%
TGAGGACATATCAATTGTTC+AGG - chr7_1:73324506-73324525 None:intergenic 35.0%
TGAACAATTGATATGTCCTC+AGG + chr7_1:73324505-73324524 Msa1036850:intron 35.0%
ACACTATTTGTATGCAAGTC+AGG - chr7_1:73324614-73324633 None:intergenic 35.0%
AACTTATAATTAGGGACGGA+GGG - chr7_1:73324782-73324801 None:intergenic 35.0%
TCCCAAAGCGACTTATAATT+TGG + chr7_1:73325005-73325024 Msa1036850:intron 35.0%
! CCCAAATTATAAGTCGCTTT+GGG - chr7_1:73325009-73325028 None:intergenic 35.0%
CCCAAAGCGACTTATAATTT+GGG + chr7_1:73325006-73325025 Msa1036850:intron 35.0%
TCCCAAATTATAAGTCGCTT+TGG - chr7_1:73325010-73325029 None:intergenic 35.0%
AAGCGACTTATAATTTGGGA+TGG + chr7_1:73325010-73325029 Msa1036850:intron 35.0%
! GACTTATAATTTGGGATGGA+GGG + chr7_1:73325014-73325033 Msa1036850:intron 35.0%
TAAATGCCGTCAAACATAAC+TGG - chr7_1:73325133-73325152 None:intergenic 35.0%
CAAAACAAACCAGTCATCAA+GGG - chr7_1:73325410-73325429 None:intergenic 35.0%
TCAAAACAAACCAGTCATCA+AGG - chr7_1:73325411-73325430 None:intergenic 35.0%
!!! CTGGTTTGTTTTGAGTATGA+AGG + chr7_1:73325417-73325436 Msa1036850:intron 35.0%
TTGGAAGAGAACACTTTGTA+GGG - chr7_1:73325485-73325504 None:intergenic 35.0%
TTTGGAAGAGAACACTTTGT+AGG - chr7_1:73325486-73325505 None:intergenic 35.0%
! ACAAAGTGTTCTCTTCCAAA+AGG + chr7_1:73325486-73325505 Msa1036850:CDS 35.0%
! CAAAGTGTTCTCTTCCAAAA+GGG + chr7_1:73325487-73325506 Msa1036850:CDS 35.0%
! GCATTTTGGACATCCATATT+TGG - chr7_1:73325514-73325533 None:intergenic 35.0%
! ACTATAGAGATGACCACTTT+TGG + chr7_1:73325582-73325601 Msa1036850:intron 35.0%
TATGGTTGTATACATGATGC+AGG + chr7_1:73325869-73325888 Msa1036850:intron 35.0%
AATTCCATAAGGTTCTGCTT+CGG - chr7_1:73325934-73325953 None:intergenic 35.0%
ACAATACGGCAAATTCCATA+AGG - chr7_1:73325945-73325964 None:intergenic 35.0%
CTCAAATTCAGCGAATTGAT+GGG + chr7_1:73326036-73326055 Msa1036850:CDS 35.0%
AAAAGTGATGAAAGTAGCCA+CGG + chr7_1:73326124-73326143 Msa1036850:CDS 35.0%
GATCCAGTACTTCAACTATA+AGG + chr7_1:73326283-73326302 Msa1036850:CDS 35.0%
CCATCTGTTGAGAATATAGA+GGG + chr7_1:73326365-73326384 Msa1036850:CDS 35.0%
TAATTCTGCCACATTGTTCT+AGG + chr7_1:73326508-73326527 Msa1036850:intron 35.0%
AAAATTTCTGTGCAGCTTCA+GGG - chr7_1:73326697-73326716 None:intergenic 35.0%
!! ATTTGGAAGAAGTATCTCGT+TGG + chr7_1:73326970-73326989 Msa1036850:CDS 35.0%
ATGCACAGATTCACATTGAA+AGG - chr7_1:73327149-73327168 None:intergenic 35.0%
TATGAATAGTCCAACAGAGT+CGG - chr7_1:73327211-73327230 None:intergenic 35.0%
TTGGGACATAATGACTGAAA+GGG - chr7_1:73327245-73327264 None:intergenic 35.0%
GTCCCAACTATTACTATTTC+TGG + chr7_1:73327258-73327277 Msa1036850:intron 35.0%
GGGAATCAACTACTTACAAA+AGG - chr7_1:73327393-73327412 None:intergenic 35.0%
GAAGCATAGGTTTATCTAAG+AGG + chr7_1:73327491-73327510 Msa1036850:intron 35.0%
GATGTAATGGCATCTTGTTA+AGG + chr7_1:73327575-73327594 Msa1036850:intron 35.0%
TTCGGTTTACATATGCATGA+GGG - chr7_1:73327612-73327631 None:intergenic 35.0%
AATGAACATGTCATTGTGCA+AGG - chr7_1:73327665-73327684 None:intergenic 35.0%
CTTCAGCTTCCAATATTCTT+TGG + chr7_1:73327723-73327742 Msa1036850:intron 35.0%
! TTATCCTGCTCAGTATTGAA+GGG + chr7_1:73327966-73327985 Msa1036850:CDS 35.0%
TTTCCTGGAACATATCATTC+AGG + chr7_1:73328044-73328063 Msa1036850:CDS 35.0%
AATCCTGAATGATATGTTCC+AGG - chr7_1:73328050-73328069 None:intergenic 35.0%
!! TACATATATCGGTTTCCCAT+CGG - chr7_1:73328232-73328251 None:intergenic 35.0%
! TGTCATCGAATCTAGGATTT+AGG - chr7_1:73328343-73328362 None:intergenic 35.0%
!! GATTTCCGGCTAGTTTAGTT+CGG - chr7_1:73323368-73323387 None:intergenic 40.0%
TTTGTCACTGTATGTGTTGG+TGG - chr7_1:73323417-73323436 None:intergenic 40.0%
GACTTTGTCACTGTATGTGT+TGG - chr7_1:73323420-73323439 None:intergenic 40.0%
TGACACTTAACATGAACGGA+GGG - chr7_1:73323858-73323877 None:intergenic 40.0%
ATCTCAGGTTTAGTCGATGT+GGG - chr7_1:73324202-73324221 None:intergenic 40.0%
GCATCCTCCTATGACTAAAT+TGG + chr7_1:73324315-73324334 Msa1036850:CDS 40.0%
ACAATTGATATGTCCTCAGG+CGG + chr7_1:73324508-73324527 Msa1036850:intron 40.0%
CAACTTATAATTAGGGACGG+AGG - chr7_1:73324783-73324802 None:intergenic 40.0%
! CGACTTATAATTTGGGATGG+AGG + chr7_1:73325013-73325032 Msa1036850:intron 40.0%
! GTTAGTCTAAGATCGTTGTC+AGG + chr7_1:73325154-73325173 Msa1036850:intron 40.0%
CATGTCTCTTTAAGCAGAGT+CGG + chr7_1:73325191-73325210 Msa1036850:intron 40.0%
! ACCTTTAAACCCTTGATGAC+TGG + chr7_1:73325398-73325417 Msa1036850:intron 40.0%
ACCAGTCATCAAGGGTTTAA+AGG - chr7_1:73325402-73325421 None:intergenic 40.0%
TGGAAGAGAACACTTTGTAG+GGG - chr7_1:73325484-73325503 None:intergenic 40.0%
CTTCCAAAAGGGACCAAATA+TGG + chr7_1:73325498-73325517 Msa1036850:CDS 40.0%
! CATCCATATTTGGTCCCTTT+TGG - chr7_1:73325504-73325523 None:intergenic 40.0%
TCTTCTGTTGGACGGAAAAT+AGG - chr7_1:73325690-73325709 None:intergenic 40.0%
! TATTTTCCGTCCAACAGAAG+AGG + chr7_1:73325689-73325708 Msa1036850:CDS 40.0%
TACATGCTATCACGCTTAAG+TGG - chr7_1:73325721-73325740 None:intergenic 40.0%
GCTCAAATTCAGCGAATTGA+TGG + chr7_1:73326035-73326054 Msa1036850:CDS 40.0%
TGAGAGCTAGTCATAACTTC+CGG - chr7_1:73326080-73326099 None:intergenic 40.0%
!!! GTTGAAGTACTTTTAGGACC+AGG - chr7_1:73326170-73326189 None:intergenic 40.0%
GAAGGTTAAAGACTGTGACA+AGG + chr7_1:73326199-73326218 Msa1036850:CDS 40.0%
! TTGAGACTGAATTTAGGACC+AGG - chr7_1:73326233-73326252 None:intergenic 40.0%
GCCATCTGTTGAGAATATAG+AGG + chr7_1:73326364-73326383 Msa1036850:CDS 40.0%
CCCTCTATATTCTCAACAGA+TGG - chr7_1:73326368-73326387 None:intergenic 40.0%
AATAATATGCGTTCACTCCC+AGG + chr7_1:73326650-73326669 Msa1036850:CDS 40.0%
AGGGCTTTCAAAGGAAAGAA+GGG - chr7_1:73326678-73326697 None:intergenic 40.0%
GAAAATTTCTGTGCAGCTTC+AGG - chr7_1:73326698-73326717 None:intergenic 40.0%
! TGCACAGAAATTTTCCCCTA+AGG + chr7_1:73326703-73326722 Msa1036850:CDS 40.0%
! ATTTTCCCCTAAGGTACAAG+TGG + chr7_1:73326712-73326731 Msa1036850:CDS 40.0%
! TTTTCCCCTAAGGTACAAGT+GGG + chr7_1:73326713-73326732 Msa1036850:CDS 40.0%
ACATTCCCACTTGTACCTTA+GGG - chr7_1:73326721-73326740 None:intergenic 40.0%
AATGACATTACCCATCTGAG+TGG - chr7_1:73326752-73326771 None:intergenic 40.0%
ATTTGGGTGAACCCAAAGTA+TGG + chr7_1:73326908-73326927 Msa1036850:CDS 40.0%
AGTCAACAGAACATCTTCCT+GGG - chr7_1:73326942-73326961 None:intergenic 40.0%
AAGTCAACAGAACATCTTCC+TGG - chr7_1:73326943-73326962 None:intergenic 40.0%
GCGAGATATGCATGATAATC+TGG + chr7_1:73327017-73327036 Msa1036850:CDS 40.0%
GTTGGGACATAATGACTGAA+AGG - chr7_1:73327246-73327265 None:intergenic 40.0%
! GCACTCAAAAAAGGAAGCAT+AGG + chr7_1:73327478-73327497 Msa1036850:intron 40.0%
GTTCGGTTTACATATGCATG+AGG - chr7_1:73327613-73327632 None:intergenic 40.0%
CAAACAATGAGCAGAAGGTT+CGG - chr7_1:73327630-73327649 None:intergenic 40.0%
AACGCACTCAATTCTATGTG+TGG + chr7_1:73327835-73327854 Msa1036850:intron 40.0%
ACGCACTCAATTCTATGTGT+GGG + chr7_1:73327836-73327855 Msa1036850:intron 40.0%
! GTTATCCTGCTCAGTATTGA+AGG + chr7_1:73327965-73327984 Msa1036850:CDS 40.0%
TACTGAATACACCGATACAC+TGG - chr7_1:73328002-73328021 None:intergenic 40.0%
TTGTGGTTTCAACTGTTCTG+AGG + chr7_1:73328073-73328092 Msa1036850:CDS 40.0%
TTCATACGACAAGCTGTTAC+TGG + chr7_1:73328181-73328200 Msa1036850:CDS 40.0%
TCATACGACAAGCTGTTACT+GGG + chr7_1:73328182-73328201 Msa1036850:CDS 40.0%
!! ACATATATCGGTTTCCCATC+GGG - chr7_1:73328231-73328250 None:intergenic 40.0%
TCTCACCGAACTAAACTAGC+CGG + chr7_1:73323360-73323379 Msa1036850:five_prime_UTR 45.0%
ACTAAACTAGCCGGAAATCG+CGG + chr7_1:73323369-73323388 Msa1036850:five_prime_UTR 45.0%
! TCACTGTATGTGTTGGTGGA+CGG - chr7_1:73323413-73323432 None:intergenic 45.0%
AGTGACAAAGTCTGCCCTTA+AGG + chr7_1:73323428-73323447 Msa1036850:five_prime_UTR 45.0%
! TCTGCCCTTAAGGTTTTCCA+GGG + chr7_1:73323438-73323457 Msa1036850:five_prime_UTR 45.0%
GTTGCCCTGGAAAACCTTAA+GGG - chr7_1:73323445-73323464 None:intergenic 45.0%
CCTACCTGTGTTGTCAATGT+CGG - chr7_1:73323513-73323532 None:intergenic 45.0%
GTGACACTTAACATGAACGG+AGG - chr7_1:73323859-73323878 None:intergenic 45.0%
TGTCACATCTGTGTTGTGCA+TGG + chr7_1:73323873-73323892 Msa1036850:intron 45.0%
GATGTTAGGGATGCAAAACC+AGG - chr7_1:73324136-73324155 None:intergenic 45.0%
TCTCAGGTTTAGTCGATGTG+GGG - chr7_1:73324201-73324220 None:intergenic 45.0%
CATCTCAGGTTTAGTCGATG+TGG - chr7_1:73324203-73324222 None:intergenic 45.0%
! CACATCGACTAAACCTGAGA+TGG + chr7_1:73324201-73324220 Msa1036850:CDS 45.0%
TCGACTAAACCTGAGATGGA+TGG + chr7_1:73324205-73324224 Msa1036850:CDS 45.0%
!! GAAGTATTGCCATCCATCTC+AGG - chr7_1:73324217-73324236 None:intergenic 45.0%
CTCTGGTCGGATATTATCCA+TGG - chr7_1:73324265-73324284 None:intergenic 45.0%
AGGTTTACACTTGCTCTGGT+CGG - chr7_1:73324278-73324297 None:intergenic 45.0%
ATGTGCTTGTGTGATGTGTC+TGG + chr7_1:73324647-73324666 Msa1036850:intron 45.0%
AACACTTTGTAGGGGGTTTC+TGG - chr7_1:73325476-73325495 None:intergenic 45.0%
GGAAGAGAACACTTTGTAGG+GGG - chr7_1:73325483-73325502 None:intergenic 45.0%
TCTTGAACCAGGTAACAGCA+AGG + chr7_1:73325622-73325641 Msa1036850:intron 45.0%
ACTTCTCTTCTTGCATCCTC+AGG - chr7_1:73325654-73325673 None:intergenic 45.0%
GGATGCAAGAAGAGAAGTTC+TGG + chr7_1:73325656-73325675 Msa1036850:CDS 45.0%
TAGGTACCTCTTCTGTTGGA+CGG - chr7_1:73325698-73325717 None:intergenic 45.0%
TGCTATCACGCTTAAGTGGT+AGG - chr7_1:73325717-73325736 None:intergenic 45.0%
AGCTAGTAGGAGGGACAATA+CGG - chr7_1:73325959-73325978 None:intergenic 45.0%
AGCCAGACATCAACAGCAAT+GGG + chr7_1:73326340-73326359 Msa1036850:CDS 45.0%
GCAGAGAACCTAGAACAATG+TGG - chr7_1:73326519-73326538 None:intergenic 45.0%
GGATCAGAAATCGCTGGAAT+TGG - chr7_1:73326581-73326600 None:intergenic 45.0%
TTCAGAGGATCAGAAATCGC+TGG - chr7_1:73326587-73326606 None:intergenic 45.0%
AGCGATTTCTGATCCTCTGA+AGG + chr7_1:73326586-73326605 Msa1036850:CDS 45.0%
CAAAGGAAAGAAGGGAACCT+GGG - chr7_1:73326670-73326689 None:intergenic 45.0%
TCAAAGGAAAGAAGGGAACC+TGG - chr7_1:73326671-73326690 None:intergenic 45.0%
CAGGGCTTTCAAAGGAAAGA+AGG - chr7_1:73326679-73326698 None:intergenic 45.0%
CATTCCCACTTGTACCTTAG+GGG - chr7_1:73326720-73326739 None:intergenic 45.0%
CACATTCCCACTTGTACCTT+AGG - chr7_1:73326722-73326741 None:intergenic 45.0%
! TGTGCTTTTCACCACTCAGA+TGG + chr7_1:73326738-73326757 Msa1036850:CDS 45.0%
! GTGCTTTTCACCACTCAGAT+GGG + chr7_1:73326739-73326758 Msa1036850:CDS 45.0%
GGTGAACCCAAAGTATGGTA+TGG + chr7_1:73326913-73326932 Msa1036850:CDS 45.0%
GGGACACCATACCATACTTT+GGG - chr7_1:73326922-73326941 None:intergenic 45.0%
TGGGACACCATACCATACTT+TGG - chr7_1:73326923-73326942 None:intergenic 45.0%
AAAGTATGGTATGGTGTCCC+AGG + chr7_1:73326922-73326941 Msa1036850:CDS 45.0%
! TAGATGGATTCCGACTCTGT+TGG + chr7_1:73327198-73327217 Msa1036850:intron 45.0%
GGGCAATGAGCACTCAAAAA+AGG + chr7_1:73327469-73327488 Msa1036850:intron 45.0%
AGGGTCAAACAATGAGCAGA+AGG - chr7_1:73327635-73327654 None:intergenic 45.0%
TTCTGCTCATTGTTTGACCC+TGG + chr7_1:73327634-73327653 Msa1036850:intron 45.0%
! CATTGTGCAAGGCATTACCA+GGG - chr7_1:73327654-73327673 None:intergenic 45.0%
! TCATTGTGCAAGGCATTACC+AGG - chr7_1:73327655-73327674 None:intergenic 45.0%
! TGCTCAGTATTGAAGGGAGA+GGG + chr7_1:73327972-73327991 Msa1036850:CDS 45.0%
! GAGAGGGTATACCAGTGTAT+CGG + chr7_1:73327988-73328007 Msa1036850:CDS 45.0%
AAGACGAGAACAAACTCACG+AGG - chr7_1:73328026-73328045 None:intergenic 45.0%
! GAGTTTGTTCTCGTCTTTCC+TGG + chr7_1:73328029-73328048 Msa1036850:CDS 45.0%
! CAAGTTTTGCTCCTCTTGAG+TGG + chr7_1:73328099-73328118 Msa1036850:CDS 45.0%
!! TTAAATATAAAAAAACAAAT+GGG - chr7_1:73327115-73327134 None:intergenic 5.0%
! TGTATGTGTTGGTGGACGGA+CGG - chr7_1:73323409-73323428 None:intergenic 50.0%
! GTCTGCCCTTAAGGTTTTCC+AGG + chr7_1:73323437-73323456 Msa1036850:five_prime_UTR 50.0%
CGTTGCCCTGGAAAACCTTA+AGG - chr7_1:73323446-73323465 None:intergenic 50.0%
! TGCACCGACATTGACAACAC+AGG + chr7_1:73323506-73323525 Msa1036850:five_prime_UTR 50.0%
CCGACATTGACAACACAGGT+AGG + chr7_1:73323510-73323529 Msa1036850:intron 50.0%
! GGCTTTTGCTACAGCGATGA+TGG + chr7_1:73324051-73324070 Msa1036850:intron 50.0%
! AGATTTTCCTCGATTCCGCC+TGG + chr7_1:73324115-73324134 Msa1036850:CDS 50.0%
GTTAGGGATGCAAAACCAGG+CGG - chr7_1:73324133-73324152 None:intergenic 50.0%
AGATTTGTGCACTACGGCCA+TGG + chr7_1:73324245-73324264 Msa1036850:CDS 50.0%
CCTCAGGTTTACACTTGCTC+TGG - chr7_1:73324282-73324301 None:intergenic 50.0%
CCAGAGCAAGTGTAAACCTG+AGG + chr7_1:73324279-73324298 Msa1036850:CDS 50.0%
ATTGATATGTCCTCAGGCGG+TGG + chr7_1:73324511-73324530 Msa1036850:intron 50.0%
TTGATATGTCCTCAGGCGGT+GGG + chr7_1:73324512-73324531 Msa1036850:intron 50.0%
!!! TTTTAGTTTCCCACCGCCTG+AGG - chr7_1:73324524-73324543 None:intergenic 50.0%
GTGTGATGTGTCTGGTGATC+TGG + chr7_1:73324655-73324674 Msa1036850:intron 50.0%
TGTGTCTGGTGATCTGGCAT+AGG + chr7_1:73324661-73324680 Msa1036850:intron 50.0%
TGAACCAGGTAACAGCAAGG+TGG + chr7_1:73325625-73325644 Msa1036850:intron 50.0%
GTGGTAGGTACCTCTTCTGT+TGG - chr7_1:73325702-73325721 None:intergenic 50.0%
CGTTCCGAAGCAGAACCTTA+TGG + chr7_1:73325927-73325946 Msa1036850:CDS 50.0%
GTATTGTCCCTCCTACTAGC+TGG + chr7_1:73325958-73325977 Msa1036850:CDS 50.0%
GCACCAAGTTCAGTATGCAC+CGG + chr7_1:73326058-73326077 Msa1036850:CDS 50.0%
CTTCCGGTGCATACTGAACT+TGG - chr7_1:73326064-73326083 None:intergenic 50.0%
GATGAAAGTAGCCACGGACA+AGG + chr7_1:73326130-73326149 Msa1036850:CDS 50.0%
!!! GTACTTTTAGGACCAGGCTC+AGG - chr7_1:73326164-73326183 None:intergenic 50.0%
! CTGAATTTAGGACCAGGCTC+AGG - chr7_1:73326227-73326246 None:intergenic 50.0%
CAGCCAGACATCAACAGCAA+TGG + chr7_1:73326339-73326358 Msa1036850:CDS 50.0%
! CTCCCATTGCTGTTGATGTC+TGG - chr7_1:73326345-73326364 None:intergenic 50.0%
GGTTCTCTGCTGTGACACTT+TGG + chr7_1:73326529-73326548 Msa1036850:intron 50.0%
TCTCTGCTGTGACACTTTGG+AGG + chr7_1:73326532-73326551 Msa1036850:CDS 50.0%
!! GAGGCTGGAGATTTTAGCAG+TGG + chr7_1:73326551-73326570 Msa1036850:CDS 50.0%
GGATAAGTGCATGCCTTCAG+AGG - chr7_1:73326602-73326621 None:intergenic 50.0%
TGCAGCTTCAGGGCTTTCAA+AGG - chr7_1:73326687-73326706 None:intergenic 50.0%
CTCTCCCTTCAATACTGAGC+AGG - chr7_1:73327973-73327992 None:intergenic 50.0%
! CTGCTCAGTATTGAAGGGAG+AGG + chr7_1:73327971-73327990 Msa1036850:CDS 50.0%
CCATGAAGCAACCACTCAAG+AGG - chr7_1:73328113-73328132 None:intergenic 50.0%
CCTCTTGAGTGGTTGCTTCA+TGG + chr7_1:73328110-73328129 Msa1036850:CDS 50.0%
GGAACACTTGCCGCGATTTC+CGG - chr7_1:73323382-73323401 None:intergenic 55.0%
TGCAAAACCAGGCGGAATCG+AGG - chr7_1:73324125-73324144 None:intergenic 55.0%
TGCTCAGTGCGTGATTCCTC+AGG - chr7_1:73324298-73324317 None:intergenic 55.0%
GCGGTTTCCAGCTAGTAGGA+GGG - chr7_1:73325968-73325987 None:intergenic 55.0%
CATGGCGGTTTCCAGCTAGT+AGG - chr7_1:73325972-73325991 None:intergenic 55.0%
! TTTAGGACCAGGCTCAGGCT+CGG - chr7_1:73326159-73326178 None:intergenic 55.0%
! TGCTGTGACACTTTGGAGGC+TGG + chr7_1:73326536-73326555 Msa1036850:CDS 55.0%
AGCTGTTACTGGGAGCAGCT+AGG + chr7_1:73328192-73328211 Msa1036850:CDS 55.0%
GCTGTTACTGGGAGCAGCTA+GGG + chr7_1:73328193-73328212 Msa1036850:CDS 55.0%
! ATGTGTTGGTGGACGGACGG+AGG - chr7_1:73323406-73323425 None:intergenic 60.0%
TGCTGCGACGCGGTTATCTG+CGG - chr7_1:73323469-73323488 None:intergenic 60.0%
! AGCTCTGATCTGCTGCGACG+CGG - chr7_1:73323479-73323498 None:intergenic 60.0%
!! GACGCCACCTTGCTGTTACC+TGG - chr7_1:73325632-73325651 None:intergenic 60.0%
AACAGCAAGGTGGCGTCCTG+AGG + chr7_1:73325635-73325654 Msa1036850:CDS 60.0%
GGCGGTTTCCAGCTAGTAGG+AGG - chr7_1:73325969-73325988 None:intergenic 60.0%
TTAGGACCAGGCTCAGGCTC+GGG - chr7_1:73326158-73326177 None:intergenic 60.0%
TGTGACAAGGAGCCTGAGCC+TGG + chr7_1:73326212-73326231 Msa1036850:CDS 60.0%
GAGCAGCTAGGGAAGCTGTG+AGG + chr7_1:73328204-73328223 Msa1036850:CDS 60.0%
GGAAGCTGTGAGGACCCGAT+GGG + chr7_1:73328214-73328233 Msa1036850:CDS 60.0%
! TGTTGGTGGACGGACGGAGG+AGG - chr7_1:73323403-73323422 None:intergenic 65.0%
GGTTATCTGCGGCGTTGCCC+TGG - chr7_1:73323458-73323477 None:intergenic 65.0%
GGGAAGCTGTGAGGACCCGA+TGG + chr7_1:73328213-73328232 Msa1036850:CDS 65.0%
AGGCTCGGGCTCCTTGTCCG+TGG - chr7_1:73326144-73326163 None:intergenic 70.0%
AAGGAGCCCGAGCCTGAGCC+TGG + chr7_1:73326149-73326168 Msa1036850:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 73323312 73328389 73323312 ID=Msa1036850;Name=Msa1036850
chr7_1 mRNA 73323312 73328389 73323312 ID=Msa1036850-mRNA-1;Parent=Msa1036850;Name=Msa1036850-mRNA-1;_AED=0.10;_eAED=0.10;_QI=263|1|1|1|0.85|0.87|8|16|577
chr7_1 exon 73323312 73323527 73323312 ID=Msa1036850-mRNA-1:exon:18007;Parent=Msa1036850-mRNA-1
chr7_1 exon 73324065 73324336 73324065 ID=Msa1036850-mRNA-1:exon:18008;Parent=Msa1036850-mRNA-1
chr7_1 exon 73325477 73325548 73325477 ID=Msa1036850-mRNA-1:exon:18009;Parent=Msa1036850-mRNA-1
chr7_1 exon 73325633 73325710 73325633 ID=Msa1036850-mRNA-1:exon:18010;Parent=Msa1036850-mRNA-1
chr7_1 exon 73325891 73326430 73325891 ID=Msa1036850-mRNA-1:exon:18011;Parent=Msa1036850-mRNA-1
chr7_1 exon 73326530 73326760 73326530 ID=Msa1036850-mRNA-1:exon:18012;Parent=Msa1036850-mRNA-1
chr7_1 exon 73326868 73327038 73326868 ID=Msa1036850-mRNA-1:exon:18013;Parent=Msa1036850-mRNA-1
chr7_1 exon 73327957 73328389 73327957 ID=Msa1036850-mRNA-1:exon:18014;Parent=Msa1036850-mRNA-1
chr7_1 five_prime_UTR 73323312 73323527 73323312 ID=Msa1036850-mRNA-1:five_prime_utr;Parent=Msa1036850-mRNA-1
chr7_1 five_prime_UTR 73324065 73324111 73324065 ID=Msa1036850-mRNA-1:five_prime_utr;Parent=Msa1036850-mRNA-1
chr7_1 CDS 73324112 73324336 73324112 ID=Msa1036850-mRNA-1:cds;Parent=Msa1036850-mRNA-1
chr7_1 CDS 73325477 73325548 73325477 ID=Msa1036850-mRNA-1:cds;Parent=Msa1036850-mRNA-1
chr7_1 CDS 73325633 73325710 73325633 ID=Msa1036850-mRNA-1:cds;Parent=Msa1036850-mRNA-1
chr7_1 CDS 73325891 73326430 73325891 ID=Msa1036850-mRNA-1:cds;Parent=Msa1036850-mRNA-1
chr7_1 CDS 73326530 73326760 73326530 ID=Msa1036850-mRNA-1:cds;Parent=Msa1036850-mRNA-1
chr7_1 CDS 73326868 73327038 73326868 ID=Msa1036850-mRNA-1:cds;Parent=Msa1036850-mRNA-1
chr7_1 CDS 73327957 73328373 73327957 ID=Msa1036850-mRNA-1:cds;Parent=Msa1036850-mRNA-1
chr7_1 three_prime_UTR 73328374 73328389 73328374 ID=Msa1036850-mRNA-1:three_prime_utr;Parent=Msa1036850-mRNA-1
Gene Sequence

>Msa1036850

ATGAGATTTTCCTCGATTCCGCCTGGTTTTGCATCCCTAACATCTTTTTATCTAAAAAAGGATGACAATGTTAAGTTGGACTCAATCCCCACATCGACTAAACCTGAGATGGATGGCAATACTTCTAATAAACAGATTTGTGCACTACGGCCATGGATAATATCCGACCAGAGCAAGTGTAAACCTGAGGAATCACGCACTGAGCATCCTCCTATGACTAAATTGAAACCCCCTACAAAGTGTTCTCTTCCAAAAGGGACCAAATATGGATGTCCAAAATGCAGTAATTGTTTTAAGGTAACAGCAAGGTGGCGTCCTGAGGATGCAAGAAGAGAAGTTCTGGAAGAAGCTCCTATTTTCCGTCCAACAGAAGAGGAATTCAAAGACACGATTAACTATATCGCAAGCATACGTTCCGAAGCAGAACCTTATGGAATTTGCCGTATTGTCCCTCCTACTAGCTGGAAACCGCCATGTACTCTTGAAAAAAAGAATGTATGGGAAAATTCTGAATTTATTGCTCAAATTCAGCGAATTGATGGGCACCAAGTTCAGTATGCACCGGAAGTTATGACTAGCTCTCATGATACTACAGAAACCAAGAGAAGAAAAGTGATGAAAGTAGCCACGGACAAGGAGCCCGAGCCTGAGCCTGGTCCTAAAAGTACTTCAACTAATAATGGGAAGGTTAAAGACTGTGACAAGGAGCCTGAGCCTGGTCCTAAATTCAGTCTCAAAACTTTTAAGAAATTGGCAGATGAATTCAAGATCCAGTACTTCAACTATAAGGATAAGAATAAGATTATGGGTTCTGATAAAATTTCAGCCAGACATCAACAGCAATGGGAGCCATCTGTTGAGAATATAGAGGGTGAATACAGACGAATTGCTCAAAATCCAACTGATGAAATTGAGGTTCTCTGCTGTGACACTTTGGAGGCTGGAGATTTTAGCAGTGGATTTCCAATTCCAGCGATTTCTGATCCTCTGAAGGCATGCACTTATCCTGAATATTTGAAATCTGGATGGAACTTAAATAATATGCGTTCACTCCCAGGTTCCCTTCTTTCCTTTGAAAGCCCTGAAGCTGCACAGAAATTTTCCCCTAAGGTACAAGTGGGAATGTGCTTTTCACCACTCAGATGGAAAGTTGAAGAGCACCAATTATACTCATTATATTACATGCATTTGGGTGAACCCAAAGTATGGTATGGTGTCCCAGGAAGATGTTCTGTTGACTTTGAAACAATTTGGAAGAAGTATCTCGTTGGAGTGCGAGATATGTATGCAGTACAGCGAGATATGCATGATAATCTGGTTATGCAGTTATCCTGCTCAGTATTGAAGGGAGAGGGTATACCAGTGTATCGGTGTATTCAGTATCCTCGTGAGTTTGTTCTCGTCTTTCCTGGAACATATCATTCAGGATTTGATTGTGGTTTCAACTGTTCTGAGGCAGCAAGTTTTGCTCCTCTTGAGTGGTTGCTTCATGGACAGAATGTTGTAGACCTATATAGTGAACAGAAGAGAAAAACTTTAATTTCATACGACAAGCTGTTACTGGGAGCAGCTAGGGAAGCTGTGAGGACCCGATGGGAAACCGATATATGTATGAAGAGCACACCCGACAACATAACATGTAAAGATGCCTATCAAAGAAATGGAATCTTGACAAAAGCTTTTAATGTACGTACTTCAGTCCTAAATCCTAGATTCGATGACATCATTTATTAG

Protein sequence

>Msa1036850

MRFSSIPPGFASLTSFYLKKDDNVKLDSIPTSTKPEMDGNTSNKQICALRPWIISDQSKCKPEESRTEHPPMTKLKPPTKCSLPKGTKYGCPKCSNCFKVTARWRPEDARREVLEEAPIFRPTEEEFKDTINYIASIRSEAEPYGICRIVPPTSWKPPCTLEKKNVWENSEFIAQIQRIDGHQVQYAPEVMTSSHDTTETKRRKVMKVATDKEPEPEPGPKSTSTNNGKVKDCDKEPEPGPKFSLKTFKKLADEFKIQYFNYKDKNKIMGSDKISARHQQQWEPSVENIEGEYRRIAQNPTDEIEVLCCDTLEAGDFSSGFPIPAISDPLKACTYPEYLKSGWNLNNMRSLPGSLLSFESPEAAQKFSPKVQVGMCFSPLRWKVEEHQLYSLYYMHLGEPKVWYGVPGRCSVDFETIWKKYLVGVRDMYAVQRDMHDNLVMQLSCSVLKGEGIPVYRCIQYPREFVLVFPGTYHSGFDCGFNCSEAASFAPLEWLLHGQNVVDLYSEQKRKTLISYDKLLLGAAREAVRTRWETDICMKSTPDNITCKDAYQRNGILTKAFNVRTSVLNPRFDDIIY*