Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1037670 | RHN49520.1 | 91.358 | 243 | 20 | 1 | 1 | 242 | 1 | 243 | 1.33e-152 | 436 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1037670 | sp|Q6H805|ORR24_ORYSJ | 57.438 | 242 | 101 | 1 | 3 | 242 | 23 | 264 | 1.40e-90 | 282 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1037670 | A0A396H8C6 | 91.358 | 243 | 20 | 1 | 1 | 242 | 1 | 243 | 6.36e-153 | 436 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1037670 | TF | GARP-ARR-B |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1037670 | MtrunA17_Chr7g0275401 | 91.358 | 243 | 20 | 1 | 1 | 242 | 1 | 243 | 1.22e-156 | 436 |
| Msa1037670 | MtrunA17_Chr1g0149841 | 79.339 | 242 | 50 | 0 | 1 | 242 | 1 | 242 | 4.79e-125 | 364 |
| Msa1037670 | MtrunA17_Chr7g0275891 | 73.438 | 256 | 53 | 3 | 1 | 242 | 1 | 255 | 2.50e-123 | 354 |
| Msa1037670 | MtrunA17_Chr1g0149851 | 71.595 | 257 | 58 | 1 | 1 | 242 | 1 | 257 | 2.53e-114 | 338 |
| Msa1037670 | MtrunA17_Chr3g0137101 | 61.382 | 246 | 89 | 2 | 2 | 242 | 5 | 249 | 1.17e-92 | 285 |
| Msa1037670 | MtrunA17_Chr1g0149831 | 76.536 | 179 | 39 | 1 | 64 | 242 | 1 | 176 | 1.66e-83 | 249 |
| Msa1037670 | MtrunA17_Chr2g0304841 | 52.610 | 249 | 109 | 3 | 3 | 242 | 16 | 264 | 2.93e-76 | 244 |
| Msa1037670 | MtrunA17_Chr1g0161431 | 50.000 | 248 | 109 | 3 | 4 | 242 | 10 | 251 | 1.89e-72 | 232 |
| Msa1037670 | MtrunA17_Chr4g0074411 | 52.101 | 238 | 111 | 2 | 5 | 242 | 18 | 252 | 1.56e-71 | 229 |
| Msa1037670 | MtrunA17_Chr4g0067981 | 49.383 | 243 | 117 | 2 | 2 | 242 | 28 | 266 | 2.20e-71 | 231 |
| Msa1037670 | MtrunA17_Chr2g0294911 | 49.180 | 244 | 116 | 3 | 1 | 242 | 25 | 262 | 2.83e-71 | 229 |
| Msa1037670 | MtrunA17_Chr4g0074401 | 50.204 | 245 | 112 | 3 | 3 | 242 | 15 | 254 | 3.44e-68 | 221 |
| Msa1037670 | MtrunA17_Chr3g0123131 | 48.148 | 243 | 118 | 2 | 4 | 242 | 12 | 250 | 8.51e-67 | 216 |
| Msa1037670 | MtrunA17_Chr8g0376881 | 49.798 | 247 | 108 | 4 | 3 | 242 | 23 | 260 | 7.97e-66 | 213 |
| Msa1037670 | MtrunA17_Chr3g0134461 | 48.148 | 243 | 73 | 2 | 2 | 243 | 5 | 195 | 4.33e-62 | 193 |
| Msa1037670 | MtrunA17_Chr4g0074421 | 50.000 | 196 | 93 | 2 | 55 | 250 | 2 | 192 | 1.85e-56 | 179 |
| Msa1037670 | MtrunA17_Chr3g0134481 | 64.341 | 129 | 46 | 0 | 2 | 130 | 5 | 133 | 1.77e-48 | 158 |
| Msa1037670 | MtrunA17_Chr4g0009851 | 37.815 | 238 | 120 | 5 | 5 | 242 | 11 | 220 | 3.25e-47 | 159 |
| Msa1037670 | MtrunA17_Chr4g0009901 | 38.174 | 241 | 121 | 5 | 2 | 242 | 7 | 219 | 8.81e-46 | 154 |
| Msa1037670 | MtrunA17_Chr6g0471041 | 34.874 | 238 | 125 | 5 | 4 | 240 | 13 | 221 | 1.82e-36 | 133 |
| Msa1037670 | MtrunA17_Chr4g0009981 | 35.233 | 193 | 98 | 2 | 50 | 242 | 2 | 167 | 5.68e-36 | 128 |
| Msa1037670 | MtrunA17_Chr8g0391911 | 30.769 | 260 | 150 | 7 | 5 | 250 | 9 | 252 | 2.11e-26 | 103 |
| Msa1037670 | MtrunA17_Chr8g0350761 | 29.644 | 253 | 158 | 7 | 8 | 242 | 20 | 270 | 3.52e-26 | 106 |
| Msa1037670 | MtrunA17_Chr4g0009991 | 37.838 | 148 | 64 | 4 | 97 | 244 | 1 | 120 | 3.53e-25 | 96.3 |
| Msa1037670 | MtrunA17_Chr6g0456631 | 36.719 | 128 | 78 | 2 | 2 | 127 | 6 | 132 | 5.78e-22 | 89.4 |
| Msa1037670 | MtrunA17_Chr4g0011071 | 30.675 | 163 | 86 | 3 | 52 | 214 | 36 | 171 | 1.89e-21 | 88.2 |
| Msa1037670 | MtrunA17_Chr8g0383961 | 35.484 | 124 | 80 | 0 | 4 | 127 | 13 | 136 | 2.53e-20 | 87.0 |
| Msa1037670 | MtrunA17_Chr3g0127941 | 27.749 | 191 | 115 | 3 | 9 | 177 | 56 | 245 | 2.95e-20 | 89.7 |
| Msa1037670 | MtrunA17_Chr8g0345901 | 31.214 | 173 | 105 | 3 | 6 | 164 | 33 | 205 | 7.78e-20 | 88.2 |
| Msa1037670 | MtrunA17_Chr3g0091641 | 29.891 | 184 | 118 | 2 | 6 | 178 | 21 | 204 | 1.87e-19 | 87.0 |
| Msa1037670 | MtrunA17_Chr1g0181811 | 36.066 | 122 | 75 | 2 | 9 | 127 | 85 | 206 | 4.75e-18 | 83.2 |
| Msa1037670 | MtrunA17_Chr6g0473731 | 32.051 | 156 | 85 | 3 | 85 | 240 | 10 | 144 | 2.05e-17 | 80.9 |
| Msa1037670 | MtrunA17_Chr4g0061021 | 32.283 | 127 | 83 | 1 | 6 | 129 | 30 | 156 | 2.42e-17 | 80.9 |
| Msa1037670 | MtrunA17_Chr4g0030271 | 35.246 | 122 | 76 | 1 | 9 | 127 | 89 | 210 | 3.72e-17 | 80.5 |
| Msa1037670 | MtrunA17_Chr5g0423031 | 37.624 | 101 | 58 | 2 | 2 | 102 | 7 | 102 | 9.68e-17 | 75.9 |
| Msa1037670 | MtrunA17_Chr7g0276361 | 33.846 | 130 | 77 | 2 | 9 | 132 | 14 | 140 | 3.00e-16 | 77.8 |
| Msa1037670 | MtrunA17_Chr2g0288601 | 52.542 | 59 | 27 | 1 | 190 | 247 | 70 | 128 | 1.73e-13 | 65.5 |
| Msa1037670 | MtrunA17_Chr4g0059571 | 32.308 | 130 | 76 | 2 | 9 | 126 | 26 | 155 | 4.24e-13 | 66.6 |
| Msa1037670 | MtrunA17_Chr7g0274471 | 56.897 | 58 | 24 | 1 | 191 | 247 | 218 | 275 | 4.38e-13 | 68.2 |
| Msa1037670 | MtrunA17_Chr1g0190301 | 51.613 | 62 | 29 | 1 | 187 | 247 | 171 | 232 | 1.14e-12 | 67.0 |
| Msa1037670 | MtrunA17_Chr8g0352871 | 29.496 | 139 | 78 | 3 | 10 | 128 | 10 | 148 | 5.90e-12 | 62.8 |
| Msa1037670 | MtrunA17_Chr4g0031961 | 42.169 | 83 | 46 | 1 | 162 | 242 | 100 | 182 | 2.49e-11 | 62.8 |
| Msa1037670 | MtrunA17_Chr5g0400241 | 33.333 | 126 | 78 | 3 | 4 | 127 | 13 | 134 | 2.63e-11 | 63.2 |
| Msa1037670 | MtrunA17_Chr7g0256551 | 29.496 | 139 | 77 | 2 | 11 | 128 | 11 | 149 | 3.85e-11 | 61.2 |
| Msa1037670 | MtrunA17_Chr4g0054981 | 31.200 | 125 | 82 | 2 | 4 | 127 | 13 | 134 | 6.29e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1037670 | AT4G31920.1 | 60.000 | 240 | 80 | 2 | 3 | 242 | 11 | 234 | 3.50e-87 | 269 |
| Msa1037670 | AT2G25180.1 | 58.091 | 241 | 95 | 3 | 3 | 242 | 11 | 246 | 6.95e-84 | 262 |
| Msa1037670 | AT3G16857.1 | 47.566 | 267 | 100 | 5 | 5 | 242 | 33 | 288 | 1.19e-69 | 226 |
| Msa1037670 | AT3G16857.2 | 47.566 | 267 | 100 | 5 | 5 | 242 | 33 | 288 | 2.45e-69 | 226 |
| Msa1037670 | AT2G01760.1 | 47.390 | 249 | 124 | 3 | 1 | 242 | 3 | 251 | 9.43e-66 | 209 |
| Msa1037670 | AT5G58080.1 | 50.602 | 249 | 99 | 4 | 3 | 242 | 12 | 245 | 1.15e-65 | 215 |
| Msa1037670 | AT1G67710.1 | 49.383 | 243 | 110 | 4 | 7 | 242 | 9 | 245 | 6.55e-65 | 211 |
| Msa1037670 | AT2G01760.2 | 42.599 | 277 | 124 | 4 | 1 | 242 | 3 | 279 | 7.79e-60 | 194 |
| Msa1037670 | AT3G16857.3 | 46.725 | 229 | 82 | 5 | 43 | 242 | 1 | 218 | 4.14e-55 | 187 |
| Msa1037670 | AT5G49240.1 | 38.333 | 240 | 143 | 4 | 8 | 245 | 41 | 277 | 1.01e-47 | 160 |
| Msa1037670 | AT3G62670.1 | 39.394 | 231 | 111 | 8 | 24 | 242 | 54 | 267 | 3.31e-41 | 146 |
| Msa1037670 | AT1G67710.2 | 47.849 | 186 | 84 | 4 | 64 | 242 | 1 | 180 | 1.09e-40 | 145 |
| Msa1037670 | AT2G01760.3 | 45.161 | 186 | 95 | 3 | 64 | 242 | 1 | 186 | 5.80e-40 | 140 |
| Msa1037670 | AT1G49190.1 | 30.268 | 261 | 139 | 5 | 3 | 240 | 28 | 268 | 7.09e-34 | 126 |
| Msa1037670 | AT5G07210.2 | 28.030 | 264 | 154 | 6 | 9 | 242 | 16 | 273 | 6.66e-27 | 109 |
| Msa1037670 | AT1G67710.3 | 41.566 | 166 | 84 | 4 | 84 | 242 | 12 | 171 | 2.15e-26 | 106 |
| Msa1037670 | AT2G27070.1 | 29.044 | 272 | 144 | 7 | 9 | 242 | 16 | 276 | 5.11e-26 | 106 |
| Msa1037670 | AT5G07210.1 | 27.206 | 272 | 154 | 7 | 9 | 242 | 16 | 281 | 2.27e-24 | 102 |
| Msa1037670 | AT1G49190.2 | 35.200 | 125 | 81 | 0 | 4 | 128 | 29 | 153 | 1.84e-22 | 96.3 |
| Msa1037670 | AT2G46790.1 | 37.398 | 123 | 72 | 2 | 9 | 127 | 37 | 158 | 1.17e-21 | 93.6 |
| Msa1037670 | AT2G46790.3 | 37.398 | 123 | 72 | 2 | 9 | 127 | 37 | 158 | 1.22e-21 | 93.6 |
| Msa1037670 | AT5G24470.1 | 34.109 | 129 | 80 | 2 | 6 | 130 | 47 | 174 | 1.71e-20 | 90.5 |
| Msa1037670 | AT5G61380.1 | 34.646 | 127 | 80 | 1 | 6 | 129 | 16 | 142 | 2.24e-19 | 87.4 |
| Msa1037670 | AT5G60100.7 | 37.705 | 122 | 73 | 1 | 9 | 127 | 64 | 185 | 1.10e-18 | 84.7 |
| Msa1037670 | AT5G60100.6 | 37.705 | 122 | 73 | 1 | 9 | 127 | 64 | 185 | 1.10e-18 | 84.7 |
| Msa1037670 | AT5G60100.4 | 37.705 | 122 | 73 | 1 | 9 | 127 | 64 | 185 | 1.10e-18 | 84.7 |
| Msa1037670 | AT5G60100.5 | 37.705 | 122 | 73 | 1 | 9 | 127 | 64 | 185 | 1.50e-18 | 84.7 |
| Msa1037670 | AT5G60100.3 | 37.705 | 122 | 73 | 1 | 9 | 127 | 64 | 185 | 1.50e-18 | 84.7 |
| Msa1037670 | AT5G60100.1 | 37.705 | 122 | 73 | 1 | 9 | 127 | 64 | 185 | 1.50e-18 | 84.7 |
| Msa1037670 | AT5G60100.2 | 37.705 | 122 | 73 | 1 | 9 | 127 | 64 | 185 | 1.75e-18 | 84.7 |
| Msa1037670 | AT5G02810.1 | 35.246 | 122 | 76 | 1 | 9 | 127 | 78 | 199 | 2.04e-17 | 81.6 |
| Msa1037670 | AT5G59570.2 | 42.466 | 73 | 42 | 0 | 170 | 242 | 120 | 192 | 5.72e-13 | 67.8 |
| Msa1037670 | AT5G59570.1 | 42.466 | 73 | 42 | 0 | 170 | 242 | 120 | 192 | 5.72e-13 | 67.8 |
| Msa1037670 | AT3G57040.2 | 28.000 | 175 | 100 | 4 | 11 | 159 | 11 | 185 | 5.29e-12 | 64.3 |
| Msa1037670 | AT3G57040.1 | 28.000 | 175 | 100 | 4 | 11 | 159 | 11 | 185 | 5.29e-12 | 64.3 |
| Msa1037670 | AT5G44190.1 | 52.830 | 53 | 25 | 0 | 190 | 242 | 146 | 198 | 1.01e-11 | 64.7 |
| Msa1037670 | AT5G44190.2 | 52.830 | 53 | 25 | 0 | 190 | 242 | 146 | 198 | 1.42e-11 | 63.9 |
| Msa1037670 | AT3G46640.3 | 31.325 | 166 | 89 | 4 | 101 | 242 | 31 | 195 | 1.95e-11 | 63.5 |
| Msa1037670 | AT3G46640.2 | 31.325 | 166 | 89 | 4 | 101 | 242 | 31 | 195 | 2.51e-11 | 63.2 |
| Msa1037670 | AT3G46640.1 | 31.325 | 166 | 89 | 4 | 101 | 242 | 31 | 195 | 2.51e-11 | 63.2 |
| Msa1037670 | AT3G13040.3 | 47.059 | 68 | 35 | 1 | 181 | 247 | 231 | 298 | 4.05e-11 | 62.8 |
| Msa1037670 | AT3G13040.1 | 47.059 | 68 | 35 | 1 | 181 | 247 | 231 | 298 | 4.05e-11 | 62.8 |
| Msa1037670 | AT3G13040.2 | 47.059 | 68 | 35 | 1 | 181 | 247 | 231 | 298 | 4.05e-11 | 62.8 |
Find 35 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAACTTGTCTCAAGATTT+TGG | 0.120883 | 7_1:+74367355 | Msa1037670:CDS |
| CTTGTCGCGGTTAACAAATT+TGG | 0.304801 | 7_1:+74368533 | Msa1037670:CDS |
| CCATTTCCACTATCAGAATT+AGG | 0.317534 | 7_1:-74368335 | None:intergenic |
| TGAAAGAGGTGAAGATGATT+TGG | 0.332494 | 7_1:+74368261 | Msa1037670:CDS |
| ATGAATGATGAGTTTCGAAT+TGG | 0.346923 | 7_1:+74367305 | Msa1037670:CDS |
| TTCACCTCTTTCAATTGAAC+AGG | 0.352913 | 7_1:-74368251 | None:intergenic |
| TGAGCTTGTTGGACTTGAAA+TGG | 0.372169 | 7_1:+74368053 | Msa1037670:CDS |
| TTTAAGCTTCTTGAGCTTGT+TGG | 0.375182 | 7_1:+74368042 | Msa1037670:CDS |
| CAACGAAATCGAGGCTTCTT+CGG | 0.398280 | 7_1:-74368485 | None:intergenic |
| CCTAATTCTGATAGTGGAAA+TGG | 0.401332 | 7_1:+74368335 | Msa1037670:CDS |
| CGAGGCTTCTTCGGCGCTGT+TGG | 0.409792 | 7_1:-74368476 | None:intergenic |
| ATTGCTTTCATAACCAGCTT+AGG | 0.420417 | 7_1:-74368197 | None:intergenic |
| AAACTTGTGGTGTAAGTCAT+TGG | 0.441523 | 7_1:-74368510 | None:intergenic |
| TTCAGTGCTATTCGTGCACT+TGG | 0.445352 | 7_1:-74367949 | None:intergenic |
| TATGAACATTACTCATTACT+AGG | 0.460796 | 7_1:-74368002 | None:intergenic |
| AGCTTAAATCCATCCATGTC+TGG | 0.471845 | 7_1:-74368027 | None:intergenic |
| TGAAAATGATGATCCTAAGC+TGG | 0.496842 | 7_1:+74368184 | Msa1037670:CDS |
| ACATGTGGCCAGCCATCTCC+AGG | 0.523004 | 7_1:+74368870 | Msa1037670:CDS |
| TTGCATAACTTACTTATGAC+AGG | 0.526242 | 7_1:-74368081 | None:intergenic |
| TAAGAATGAAGATGATGTTG+AGG | 0.533063 | 7_1:+74368421 | Msa1037670:CDS |
| GATGTGCCTAATTCTGATAG+TGG | 0.537306 | 7_1:+74368329 | Msa1037670:CDS |
| CGAAGAAGCCTCGATTTCGT+TGG | 0.556982 | 7_1:+74368486 | Msa1037670:CDS |
| TATTCGTGCACTTGGAGCAG+TGG | 0.566879 | 7_1:-74367941 | None:intergenic |
| GTTCATATGCCAGACATGGA+TGG | 0.584384 | 7_1:+74368018 | Msa1037670:CDS |
| GAAACCTGTTCAATTGAAAG+AGG | 0.592307 | 7_1:+74368247 | Msa1037670:CDS |
| GTTATGAAAGCAATTGATCT+CGG | 0.596446 | 7_1:+74368206 | Msa1037670:CDS |
| GAGTATGATCATGAAAATGA+TGG | 0.597211 | 7_1:+74368452 | Msa1037670:CDS |
| AAATCTTACAAAGGAACATG+TGG | 0.625593 | 7_1:+74368855 | Msa1037670:CDS |
| ATAACTTACTTATGACAGGT+AGG | 0.629417 | 7_1:-74368077 | None:intergenic |
| GAATGTTGAAAATCTTACAA+AGG | 0.637383 | 7_1:+74368846 | Msa1037670:CDS |
| ACACCACAAGTTTCTTGTCG+CGG | 0.645407 | 7_1:+74368520 | Msa1037670:CDS |
| CTCGAAAGGTGTCAATACCA+TGG | 0.650196 | 7_1:+74367386 | Msa1037670:CDS |
| TCATTGGACCAACGAAATCG+AGG | 0.660616 | 7_1:-74368494 | None:intergenic |
| TAATGTTCATATGCCAGACA+TGG | 0.666265 | 7_1:+74368014 | Msa1037670:CDS |
| TAACCGCGACAAGAAACTTG+TGG | 0.669528 | 7_1:-74368523 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAATATCATTATGAA+AGG | - | chr7_1:74367897-74367916 | None:intergenic | 10.0% |
| !! | ATAATATTAATATCATCATT+GGG | - | chr7_1:74368679-74368698 | None:intergenic | 10.0% |
| !! | AAAATTAATATCATTATGAA+AGG | - | chr7_1:74367897-74367916 | None:intergenic | 10.0% |
| !! | ATAATATTAATATCATCATT+GGG | - | chr7_1:74368679-74368698 | None:intergenic | 10.0% |
| !! | CATAATATTAATATCATCAT+TGG | - | chr7_1:74368680-74368699 | None:intergenic | 15.0% |
| !! | CATAATATTAATATCATCAT+TGG | - | chr7_1:74368680-74368699 | None:intergenic | 15.0% |
| !! | ATCATTAAATTGTAATCACA+AGG | + | chr7_1:74367472-74367491 | Msa1037670:intron | 20.0% |
| !! | TCATTAAATTGTAATCACAA+GGG | + | chr7_1:74367473-74367492 | Msa1037670:intron | 20.0% |
| !!! | TAATATAATTGATTCGTACA+AGG | - | chr7_1:74367652-74367671 | None:intergenic | 20.0% |
| !!! | TGTGAACTTATGTTATTTTT+TGG | + | chr7_1:74367800-74367819 | Msa1037670:intron | 20.0% |
| !! | ATCATTAAATTGTAATCACA+AGG | + | chr7_1:74367472-74367491 | Msa1037670:intron | 20.0% |
| !! | TCATTAAATTGTAATCACAA+GGG | + | chr7_1:74367473-74367492 | Msa1037670:intron | 20.0% |
| !!! | TAATATAATTGATTCGTACA+AGG | - | chr7_1:74367652-74367671 | None:intergenic | 20.0% |
| !!! | TGTGAACTTATGTTATTTTT+TGG | + | chr7_1:74367800-74367819 | Msa1037670:intron | 20.0% |
| !!! | AATTGTTTTTGACTATGAAG+CGG | + | chr7_1:74367440-74367459 | Msa1037670:intron | 25.0% |
| !! | TTTGATTCTTTAGATCCTTT+TGG | + | chr7_1:74367550-74367569 | Msa1037670:intron | 25.0% |
| ! | AATTAGAACGATAACGTTAA+CGG | + | chr7_1:74367585-74367604 | Msa1037670:intron | 25.0% |
| !! | AATCTTTGAGAGAATTTGAT+CGG | - | chr7_1:74367729-74367748 | None:intergenic | 25.0% |
| ! | TATGAACATTACTCATTACT+AGG | - | chr7_1:74368005-74368024 | None:intergenic | 25.0% |
| ! | ATGTATCAGTAACAAAAGAT+TGG | - | chr7_1:74368111-74368130 | None:intergenic | 25.0% |
| !! | TTATCCTTTCTTTTTCTAGA+TGG | - | chr7_1:74368404-74368423 | None:intergenic | 25.0% |
| ! | AGCAATAGATAAAAGATTTG+AGG | - | chr7_1:74368608-74368627 | None:intergenic | 25.0% |
| ! | TTTATCAAAGATGTTTGAGT+AGG | + | chr7_1:74368643-74368662 | Msa1037670:intron | 25.0% |
| !! | ATCAAGTTAAGAATCTTTTG+TGG | - | chr7_1:74368826-74368845 | None:intergenic | 25.0% |
| ! | GAATGTTGAAAATCTTACAA+AGG | + | chr7_1:74368846-74368865 | Msa1037670:CDS | 25.0% |
| ! | AAGAGATAAAGAAAAATACC+TGG | - | chr7_1:74368891-74368910 | None:intergenic | 25.0% |
| !!! | AATTGTTTTTGACTATGAAG+CGG | + | chr7_1:74367440-74367459 | Msa1037670:intron | 25.0% |
| !! | TTTGATTCTTTAGATCCTTT+TGG | + | chr7_1:74367550-74367569 | Msa1037670:intron | 25.0% |
| ! | AATTAGAACGATAACGTTAA+CGG | + | chr7_1:74367585-74367604 | Msa1037670:intron | 25.0% |
| !! | AATCTTTGAGAGAATTTGAT+CGG | - | chr7_1:74367729-74367748 | None:intergenic | 25.0% |
| ! | TATGAACATTACTCATTACT+AGG | - | chr7_1:74368005-74368024 | None:intergenic | 25.0% |
| ! | ATGTATCAGTAACAAAAGAT+TGG | - | chr7_1:74368111-74368130 | None:intergenic | 25.0% |
| !! | TTATCCTTTCTTTTTCTAGA+TGG | - | chr7_1:74368404-74368423 | None:intergenic | 25.0% |
| ! | AGCAATAGATAAAAGATTTG+AGG | - | chr7_1:74368608-74368627 | None:intergenic | 25.0% |
| ! | TTTATCAAAGATGTTTGAGT+AGG | + | chr7_1:74368643-74368662 | Msa1037670:intron | 25.0% |
| !! | ATCAAGTTAAGAATCTTTTG+TGG | - | chr7_1:74368826-74368845 | None:intergenic | 25.0% |
| ! | GAATGTTGAAAATCTTACAA+AGG | + | chr7_1:74368846-74368865 | Msa1037670:CDS | 25.0% |
| ! | AAGAGATAAAGAAAAATACC+TGG | - | chr7_1:74368891-74368910 | None:intergenic | 25.0% |
| ATGAATGATGAGTTTCGAAT+TGG | + | chr7_1:74367305-74367324 | Msa1037670:CDS | 30.0% | |
| ! | AAAGAAAAAGAAGCATACCA+TGG | - | chr7_1:74367406-74367425 | None:intergenic | 30.0% |
| TAAATTGTAATCACAAGGGA+CGG | + | chr7_1:74367477-74367496 | Msa1037670:intron | 30.0% | |
| ! | CACTTCTAATCTAAGGTTAT+CGG | - | chr7_1:74367508-74367527 | None:intergenic | 30.0% |
| ! | CATTTTCTTCGATACTGTTT+AGG | + | chr7_1:74367683-74367702 | Msa1037670:intron | 30.0% |
| GATCAAATTCTCTCAAAGAT+TGG | + | chr7_1:74367728-74367747 | Msa1037670:intron | 30.0% | |
| TTTAACTGCATCCAAATTGT+TGG | + | chr7_1:74367833-74367852 | Msa1037670:intron | 30.0% | |
| ATCGAATGAATCCAACAATT+TGG | - | chr7_1:74367847-74367866 | None:intergenic | 30.0% | |
| ATAACTTACTTATGACAGGT+AGG | - | chr7_1:74368080-74368099 | None:intergenic | 30.0% | |
| TTGCATAACTTACTTATGAC+AGG | - | chr7_1:74368084-74368103 | None:intergenic | 30.0% | |
| GTTATGAAAGCAATTGATCT+CGG | + | chr7_1:74368206-74368225 | Msa1037670:CDS | 30.0% | |
| AAAGCCATCTAGAAAAAGAA+AGG | + | chr7_1:74368397-74368416 | Msa1037670:CDS | 30.0% | |
| TAAGAATGAAGATGATGTTG+AGG | + | chr7_1:74368421-74368440 | Msa1037670:CDS | 30.0% | |
| GAGTATGATCATGAAAATGA+TGG | + | chr7_1:74368452-74368471 | Msa1037670:CDS | 30.0% | |
| !!! | AGTTGTTATTTTGTTTGCAG+AGG | + | chr7_1:74368795-74368814 | Msa1037670:intron | 30.0% |
| AAATCTTACAAAGGAACATG+TGG | + | chr7_1:74368855-74368874 | Msa1037670:CDS | 30.0% | |
| TAAAGAAAAATACCTGGAGA+TGG | - | chr7_1:74368885-74368904 | None:intergenic | 30.0% | |
| ATGAATGATGAGTTTCGAAT+TGG | + | chr7_1:74367305-74367324 | Msa1037670:CDS | 30.0% | |
| ! | AAAGAAAAAGAAGCATACCA+TGG | - | chr7_1:74367406-74367425 | None:intergenic | 30.0% |
| TAAATTGTAATCACAAGGGA+CGG | + | chr7_1:74367477-74367496 | Msa1037670:intron | 30.0% | |
| ! | CACTTCTAATCTAAGGTTAT+CGG | - | chr7_1:74367508-74367527 | None:intergenic | 30.0% |
| ! | CATTTTCTTCGATACTGTTT+AGG | + | chr7_1:74367683-74367702 | Msa1037670:intron | 30.0% |
| GATCAAATTCTCTCAAAGAT+TGG | + | chr7_1:74367728-74367747 | Msa1037670:intron | 30.0% | |
| TTTAACTGCATCCAAATTGT+TGG | + | chr7_1:74367833-74367852 | Msa1037670:intron | 30.0% | |
| ATCGAATGAATCCAACAATT+TGG | - | chr7_1:74367847-74367866 | None:intergenic | 30.0% | |
| ATAACTTACTTATGACAGGT+AGG | - | chr7_1:74368080-74368099 | None:intergenic | 30.0% | |
| TTGCATAACTTACTTATGAC+AGG | - | chr7_1:74368084-74368103 | None:intergenic | 30.0% | |
| GTTATGAAAGCAATTGATCT+CGG | + | chr7_1:74368206-74368225 | Msa1037670:CDS | 30.0% | |
| AAAGCCATCTAGAAAAAGAA+AGG | + | chr7_1:74368397-74368416 | Msa1037670:CDS | 30.0% | |
| TAAGAATGAAGATGATGTTG+AGG | + | chr7_1:74368421-74368440 | Msa1037670:CDS | 30.0% | |
| GAGTATGATCATGAAAATGA+TGG | + | chr7_1:74368452-74368471 | Msa1037670:CDS | 30.0% | |
| !!! | AGTTGTTATTTTGTTTGCAG+AGG | + | chr7_1:74368795-74368814 | Msa1037670:intron | 30.0% |
| AAATCTTACAAAGGAACATG+TGG | + | chr7_1:74368855-74368874 | Msa1037670:CDS | 30.0% | |
| TAAAGAAAAATACCTGGAGA+TGG | - | chr7_1:74368885-74368904 | None:intergenic | 30.0% | |
| ! | CAGAACTTGTCTCAAGATTT+TGG | + | chr7_1:74367355-74367374 | Msa1037670:CDS | 35.0% |
| !! | TCTTTAGATCCTTTTGGCTA+AGG | + | chr7_1:74367556-74367575 | Msa1037670:intron | 35.0% |
| ATTACAATGCCTTAGCCAAA+AGG | - | chr7_1:74367568-74367587 | None:intergenic | 35.0% | |
| TAATGTTCATATGCCAGACA+TGG | + | chr7_1:74368014-74368033 | Msa1037670:CDS | 35.0% | |
| TTTAAGCTTCTTGAGCTTGT+TGG | + | chr7_1:74368042-74368061 | Msa1037670:CDS | 35.0% | |
| TGAAAATGATGATCCTAAGC+TGG | + | chr7_1:74368184-74368203 | Msa1037670:CDS | 35.0% | |
| ATTGCTTTCATAACCAGCTT+AGG | - | chr7_1:74368200-74368219 | None:intergenic | 35.0% | |
| GAAACCTGTTCAATTGAAAG+AGG | + | chr7_1:74368247-74368266 | Msa1037670:CDS | 35.0% | |
| TTCACCTCTTTCAATTGAAC+AGG | - | chr7_1:74368254-74368273 | None:intergenic | 35.0% | |
| TGAAAGAGGTGAAGATGATT+TGG | + | chr7_1:74368261-74368280 | Msa1037670:CDS | 35.0% | |
| CCATTTCCACTATCAGAATT+AGG | - | chr7_1:74368338-74368357 | None:intergenic | 35.0% | |
| !! | CCTAATTCTGATAGTGGAAA+TGG | + | chr7_1:74368335-74368354 | Msa1037670:CDS | 35.0% |
| AAACTTGTGGTGTAAGTCAT+TGG | - | chr7_1:74368513-74368532 | None:intergenic | 35.0% | |
| ! | TTTTGCACATTGAAAGCAGA+GGG | - | chr7_1:74368577-74368596 | None:intergenic | 35.0% |
| ! | TTTTTGCACATTGAAAGCAG+AGG | - | chr7_1:74368578-74368597 | None:intergenic | 35.0% |
| !! | TTATTTTGTTTGCAGAGGCT+AGG | + | chr7_1:74368800-74368819 | Msa1037670:intron | 35.0% |
| ! | CAGAACTTGTCTCAAGATTT+TGG | + | chr7_1:74367355-74367374 | Msa1037670:CDS | 35.0% |
| !! | TCTTTAGATCCTTTTGGCTA+AGG | + | chr7_1:74367556-74367575 | Msa1037670:intron | 35.0% |
| ATTACAATGCCTTAGCCAAA+AGG | - | chr7_1:74367568-74367587 | None:intergenic | 35.0% | |
| TAATGTTCATATGCCAGACA+TGG | + | chr7_1:74368014-74368033 | Msa1037670:CDS | 35.0% | |
| TTTAAGCTTCTTGAGCTTGT+TGG | + | chr7_1:74368042-74368061 | Msa1037670:CDS | 35.0% | |
| TGAAAATGATGATCCTAAGC+TGG | + | chr7_1:74368184-74368203 | Msa1037670:CDS | 35.0% | |
| ATTGCTTTCATAACCAGCTT+AGG | - | chr7_1:74368200-74368219 | None:intergenic | 35.0% | |
| GAAACCTGTTCAATTGAAAG+AGG | + | chr7_1:74368247-74368266 | Msa1037670:CDS | 35.0% | |
| TTCACCTCTTTCAATTGAAC+AGG | - | chr7_1:74368254-74368273 | None:intergenic | 35.0% | |
| TGAAAGAGGTGAAGATGATT+TGG | + | chr7_1:74368261-74368280 | Msa1037670:CDS | 35.0% | |
| CCATTTCCACTATCAGAATT+AGG | - | chr7_1:74368338-74368357 | None:intergenic | 35.0% | |
| !! | CCTAATTCTGATAGTGGAAA+TGG | + | chr7_1:74368335-74368354 | Msa1037670:CDS | 35.0% |
| AAACTTGTGGTGTAAGTCAT+TGG | - | chr7_1:74368513-74368532 | None:intergenic | 35.0% | |
| ! | TTTTGCACATTGAAAGCAGA+GGG | - | chr7_1:74368577-74368596 | None:intergenic | 35.0% |
| ! | TTTTTGCACATTGAAAGCAG+AGG | - | chr7_1:74368578-74368597 | None:intergenic | 35.0% |
| !! | TTATTTTGTTTGCAGAGGCT+AGG | + | chr7_1:74368800-74368819 | Msa1037670:intron | 35.0% |
| !! | TTTTGGAGAGACTTCTCGAA+AGG | + | chr7_1:74367372-74367391 | Msa1037670:CDS | 40.0% |
| TTGTTGGATTCATTCGATGC+AGG | + | chr7_1:74367849-74367868 | Msa1037670:intron | 40.0% | |
| AGCTTAAATCCATCCATGTC+TGG | - | chr7_1:74368030-74368049 | None:intergenic | 40.0% | |
| !! | TGAGCTTGTTGGACTTGAAA+TGG | + | chr7_1:74368053-74368072 | Msa1037670:CDS | 40.0% |
| GATGTGCCTAATTCTGATAG+TGG | + | chr7_1:74368329-74368348 | Msa1037670:CDS | 40.0% | |
| CTTGTCGCGGTTAACAAATT+TGG | + | chr7_1:74368533-74368552 | Msa1037670:CDS | 40.0% | |
| !! | CGTCATAGCAAGAGTATTTG+AGG | - | chr7_1:74368744-74368763 | None:intergenic | 40.0% |
| !! | TTTTGGAGAGACTTCTCGAA+AGG | + | chr7_1:74367372-74367391 | Msa1037670:CDS | 40.0% |
| TTGTTGGATTCATTCGATGC+AGG | + | chr7_1:74367849-74367868 | Msa1037670:intron | 40.0% | |
| AGCTTAAATCCATCCATGTC+TGG | - | chr7_1:74368030-74368049 | None:intergenic | 40.0% | |
| !! | TGAGCTTGTTGGACTTGAAA+TGG | + | chr7_1:74368053-74368072 | Msa1037670:CDS | 40.0% |
| GATGTGCCTAATTCTGATAG+TGG | + | chr7_1:74368329-74368348 | Msa1037670:CDS | 40.0% | |
| CTTGTCGCGGTTAACAAATT+TGG | + | chr7_1:74368533-74368552 | Msa1037670:CDS | 40.0% | |
| !! | CGTCATAGCAAGAGTATTTG+AGG | - | chr7_1:74368744-74368763 | None:intergenic | 40.0% |
| !! | CTCGAAAGGTGTCAATACCA+TGG | + | chr7_1:74367386-74367405 | Msa1037670:CDS | 45.0% |
| GCAGCGACACTTCTAATCTA+AGG | - | chr7_1:74367515-74367534 | None:intergenic | 45.0% | |
| ! | TTCAGTGCTATTCGTGCACT+TGG | - | chr7_1:74367952-74367971 | None:intergenic | 45.0% |
| GTTCATATGCCAGACATGGA+TGG | + | chr7_1:74368018-74368037 | Msa1037670:CDS | 45.0% | |
| CAACGAAATCGAGGCTTCTT+CGG | - | chr7_1:74368488-74368507 | None:intergenic | 45.0% | |
| TCATTGGACCAACGAAATCG+AGG | - | chr7_1:74368497-74368516 | None:intergenic | 45.0% | |
| ACACCACAAGTTTCTTGTCG+CGG | + | chr7_1:74368520-74368539 | Msa1037670:CDS | 45.0% | |
| TAACCGCGACAAGAAACTTG+TGG | - | chr7_1:74368526-74368545 | None:intergenic | 45.0% | |
| GAAAAATACCTGGAGATGGC+TGG | - | chr7_1:74368881-74368900 | None:intergenic | 45.0% | |
| !! | CTCGAAAGGTGTCAATACCA+TGG | + | chr7_1:74367386-74367405 | Msa1037670:CDS | 45.0% |
| GCAGCGACACTTCTAATCTA+AGG | - | chr7_1:74367515-74367534 | None:intergenic | 45.0% | |
| ! | TTCAGTGCTATTCGTGCACT+TGG | - | chr7_1:74367952-74367971 | None:intergenic | 45.0% |
| GTTCATATGCCAGACATGGA+TGG | + | chr7_1:74368018-74368037 | Msa1037670:CDS | 45.0% | |
| CAACGAAATCGAGGCTTCTT+CGG | - | chr7_1:74368488-74368507 | None:intergenic | 45.0% | |
| TCATTGGACCAACGAAATCG+AGG | - | chr7_1:74368497-74368516 | None:intergenic | 45.0% | |
| ACACCACAAGTTTCTTGTCG+CGG | + | chr7_1:74368520-74368539 | Msa1037670:CDS | 45.0% | |
| TAACCGCGACAAGAAACTTG+TGG | - | chr7_1:74368526-74368545 | None:intergenic | 45.0% | |
| GAAAAATACCTGGAGATGGC+TGG | - | chr7_1:74368881-74368900 | None:intergenic | 45.0% | |
| TATTCGTGCACTTGGAGCAG+TGG | - | chr7_1:74367944-74367963 | None:intergenic | 50.0% | |
| CGAAGAAGCCTCGATTTCGT+TGG | + | chr7_1:74368486-74368505 | Msa1037670:CDS | 50.0% | |
| TATTCGTGCACTTGGAGCAG+TGG | - | chr7_1:74367944-74367963 | None:intergenic | 50.0% | |
| CGAAGAAGCCTCGATTTCGT+TGG | + | chr7_1:74368486-74368505 | Msa1037670:CDS | 50.0% | |
| ACATGTGGCCAGCCATCTCC+AGG | + | chr7_1:74368870-74368889 | Msa1037670:CDS | 60.0% | |
| ACATGTGGCCAGCCATCTCC+AGG | + | chr7_1:74368870-74368889 | Msa1037670:CDS | 60.0% | |
| CGAGGCTTCTTCGGCGCTGT+TGG | - | chr7_1:74368479-74368498 | None:intergenic | 65.0% | |
| CGAGGCTTCTTCGGCGCTGT+TGG | - | chr7_1:74368479-74368498 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 74367305 | 74368927 | 74367305 | ID=Msa1037670;Name=Msa1037670 |
| chr7_1 | mRNA | 74367305 | 74368927 | 74367305 | ID=Msa1037670-mRNA-1;Parent=Msa1037670;Name=Msa1037670-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|4|0|251 |
| chr7_1 | exon | 74367305 | 74367407 | 74367305 | ID=Msa1037670-mRNA-1:exon:18661;Parent=Msa1037670-mRNA-1 |
| chr7_1 | exon | 74367938 | 74368090 | 74367938 | ID=Msa1037670-mRNA-1:exon:18662;Parent=Msa1037670-mRNA-1 |
| chr7_1 | exon | 74368177 | 74368563 | 74368177 | ID=Msa1037670-mRNA-1:exon:18663;Parent=Msa1037670-mRNA-1 |
| chr7_1 | exon | 74368815 | 74368927 | 74368815 | ID=Msa1037670-mRNA-1:exon:18664;Parent=Msa1037670-mRNA-1 |
| chr7_1 | CDS | 74367305 | 74367407 | 74367305 | ID=Msa1037670-mRNA-1:cds;Parent=Msa1037670-mRNA-1 |
| chr7_1 | CDS | 74367938 | 74368090 | 74367938 | ID=Msa1037670-mRNA-1:cds;Parent=Msa1037670-mRNA-1 |
| chr7_1 | CDS | 74368177 | 74368563 | 74368177 | ID=Msa1037670-mRNA-1:cds;Parent=Msa1037670-mRNA-1 |
| chr7_1 | CDS | 74368815 | 74368927 | 74368815 | ID=Msa1037670-mRNA-1:cds;Parent=Msa1037670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
