AlfalfaGEDB | Msa1038240

M. sativa cultivar zhongmu-4 / Msa1038240

KEGG: K04733
GO: GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016324 GO:0030427 GO:0035838 GO:0042995 GO:0044425 GO:0044459 GO:0044463 GO:0044464 GO:0045177 GO:0051286 GO:0071944 GO:0090404 GO:0090406 GO:0098590 GO:0120025 GO:0120038
PFAM: PF12819.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1038240	KEH24563.1	97.341	865	23	0	1	865	8	872	0.0	1764

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1038240	sp\|Q3E8W4\|ANX2_ARATH	62.782	841	290	16	34	865	32	858	0.0	1040

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1038240	A0A072U5Z4	97.341	865	23	0	1	865	8	872	0.0	1764

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1038240	MtrunA17_Chr7g0274261	97.341	865	23	0	1	865	8	872	1764
Msa1038240	MtrunA17_Chr1g0190581	76.457	875	189	12	1	865	1	868	1334
Msa1038240	MtrunA17_Chr7g0245131	49.945	913	389	22	1	865	1	893	817
Msa1038240	MtrunA17_Chr2g0318301	45.750	800	380	20	82	865	82	843	649
Msa1038240	MtrunA17_Chr8g0352381	45.069	801	381	21	31	816	64	820	620
Msa1038240	MtrunA17_Chr2g0292501	42.907	853	423	24	31	851	29	849	609
Msa1038240	MtrunA17_Chr4g0030441	43.574	817	416	17	57	865	61	840	603
Msa1038240	MtrunA17_Chr2g0327671	43.298	843	408	23	49	865	49	847	601
Msa1038240	MtrunA17_Chr6g0455321	41.786	907	459	29	8	865	14	900	593
Msa1038240	MtrunA17_Chr5g0420151	42.702	829	417	22	1	801	6	804	593

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1038240	AT5G28680.1	62.782	841	290	16	34	865	32	858	1040
Msa1038240	AT5G28680.2	62.782	841	290	16	34	865	32	858	1040
Msa1038240	AT3G04690.1	60.092	872	319	14	1	865	1	850	1037
Msa1038240	AT3G51550.1	52.262	884	370	21	21	865	25	895	839
Msa1038240	AT5G39000.1	44.789	902	432	31	1	865	1	873	650
Msa1038240	AT5G54380.1	44.195	801	404	14	82	865	81	855	622
Msa1038240	AT5G61350.1	43.548	806	385	17	33	800	35	808	607
Msa1038240	AT3G46290.1	41.995	862	444	23	14	865	15	830	598
Msa1038240	AT2G21480.1	44.836	794	381	21	24	800	49	802	597
Msa1038240	AT1G30570.1	42.454	815	422	20	8	800	9	798	595

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Find 248 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCTAGCTGACATGTA+TGG	0.500832	7_1:+75066330	None:intergenic
AAACATGGTTTGCAAATTTA+AGG	0.105955	7_1:+75065936	None:intergenic
AAACCATCTGACAAGCAAAA+TGG	0.262687	7_1:-75066060	Msa1038240:CDS
AAAGCATCTCAATCTCGGTC+TGG	0.500266	7_1:+75064888	None:intergenic
AACAAGAAGAAGAGAGTTCC+AGG	0.380560	7_1:-75065199	Msa1038240:CDS
AACAAGTTAGTCTTGCAGAA+TGG	0.500097	7_1:-75064382	Msa1038240:CDS
AACCATCTGACAAGCAAAAT+GGG	0.440316	7_1:-75066059	Msa1038240:CDS
AACCTCACTGCCATGGCTCA+AGG	0.528259	7_1:-75065085	Msa1038240:CDS
AACCTGCAAGAAAACAAGGA+TGG	0.646300	7_1:-75064182	Msa1038240:CDS
AACCTTGAGCCATGGCAGTG+AGG	0.683224	7_1:+75065083	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTGCCAAAAACTTATTATC+AGG	+	chr7_1:75064154-75064173	None:intergenic	30.0%
TTCAACCTGATAAACGTTAT+TGG	-	chr7_1:75064287-75064306	Msa1038240:CDS	30.0%
CTGTGATTTCTATTATTCCA+AGG	-	chr7_1:75064939-75064958	Msa1038240:CDS	30.0%
TACTATGATGCTATACTCAA+TGG	-	chr7_1:75065147-75065166	Msa1038240:CDS	30.0%
ACTATGATGCTATACTCAAT+GGG	-	chr7_1:75065148-75065167	Msa1038240:CDS	30.0%
TATGGTAATTCACACACAAA+TGG	-	chr7_1:75065420-75065439	Msa1038240:CDS	30.0%
CTTATACAAATGTTCCCTAA+AGG	+	chr7_1:75065796-75065815	None:intergenic	30.0%
TTTGACATCTCTATGAATGA+TGG	+	chr7_1:75065919-75065938	None:intergenic	30.0%
ATATTCTCTTGGATGAAAAC+TGG	-	chr7_1:75065946-75065965	Msa1038240:CDS	30.0%
TTTATTGTTCCCTTGAGATT+GGG	+	chr7_1:75066254-75066273	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	75063995	75066592	75063995	ID=Msa1038240;Name=Msa1038240
chr7_1	mRNA	75063995	75066592	75063995	ID=Msa1038240-mRNA-1;Parent=Msa1038240;Name=Msa1038240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|865
chr7_1	exon	75063995	75066592	75063995	ID=Msa1038240-mRNA-1:exon:19083;Parent=Msa1038240-mRNA-1
chr7_1	CDS	75063995	75066592	75063995	ID=Msa1038240-mRNA-1:cds;Parent=Msa1038240-mRNA-1

Gene Sequence

>Msa1038240

ATGCATAAGCATACAAGTCTCTTGTTGTATTTCGTCGGTATCTCTATTTTGTTGCATGGCATTCACGGTGCATCCATAGAGGAGCCAGGTTCATTGATATTGGGTTGTGGGTTGGATGAAGGGGGAGCCAAAGATGAGGATGGAAGGCAATGGAGTCCTGATAATAAGTTTTTGGCAACACAAAATGGTTCAACAACGTTCAAAGCCGCATACCAAGATCCTTCCCTCTCCTCTGTGGTTCCATACATGTCAGCTAGAATTTTCACATCAGAAACAACATACAAATTTAATGTTCAACCTGATAAACGTTATTGGCTCAGGCTCCACTTTTATCCATCCCTTTATGGAACTTTCAACCCCTCCGATTCATATTTCTCTGTGGCTGCAAATGGGATTACCCTCCTCAGCAATTTCAGCGCTTCTATCACTTGTCAGGCCCTCTCACAAGCTTACATTGACAGAGAGTATTCTCTTGCTCCTTTGAATTCAGATACTTTGACTCTTACATTTAAACCATCTGACAAGCAAAATGGGACTTTTGCTTTCGTCAATGGAATTCAGTTGATCCAAATGCCCGAGTTGTTTGACTCTGCTTCATTGGTCGGGTTTGGTGACCAAACCATGGACATCAAAACCTTAAATTTGCAAACCATGTTTAGACTGAACGTTGGTGGGCAATATGTGTCTCCATCCCAAGATTCTGGCCTTTCGAGAATGTGGTACGACGACACACCTTACCTATATGGTTCATCCTATGGTGTCACCAACGAAGCTAAAAAGGATGTCCTAATCGACTATCAGACCATGCCAAAGTACATTGCACCTCCTACTGTCTACTCCACATCAAGATCAATGGGTACCGATAAGGACGTCAACATGGGATACAACCTCACGTGGGTTTTCCAAGTTGATCCAAATTCCATGTACCTCGCGAGGTTGCATTTCTGTGATTTCTATTATTCCAAGGTCAATGAGATTGTTTTCAATATATTTCTCAACAACAATACGGCACAGGCTCAAGCTGATGTTATTGGGTGGACAGGAGGTAAAGGCATGACAACTTACAAGGACTATGTGGTATATGTCCAAGACGGGGAGGGGGATGAGCATCTATGGCTTGCATTACATCCAGCACCTGACTCAAAACCACAGTACTATGATGCTATACTCAATGGGGTGGAGATATTCAAGCTCAATGACACAGACTTGTCTGGCCCCAATCCTCAGCCTTCAGACATGCTCCTCGAAGGTGAATCACAGGAAACAGGTTTCCATACACACAAATCATATGACAAGAAAGCTGTCATTGGTGGAGCTGCAGGAGGTGCTGCGGGTTTTGCCTTTATGGCGGCAATATGCATTGCTGTCTACAACAAGAAGAAGAGAGTTCCAGGGGCAGTCACACAAACAAGTTGGCTTCCCATCTATGGTAATTCACACACAAATGGCAGTAAATCCACGTCTGGGAAGAGCACTACAAGTGCAAACCTCACTGCCATGGCTCAAGGTTTATGTCGCTATTTTTCGTTACAAGAGATAAAGCACGCAACCAATAGTTTTGATGAGTCCAACGTGATTGGAGTTGGTGGATTTGGAAAGGTTTACAAGGGTGTCATTGATAATGGAATGCTAGTGGCGATTAAGAGGTCAAATCCACAATCAGAACAAGGAGTCAATGAATTCCAGACCGAGATTGAGATGCTTTCTAAGTTGAGACACAAGCATTTGGTGTCCTTGATTGGATTTTGCGAGGAAGATAATGAGATGTGTTTGGTTTATGACTACATGGCTCTTGGAACCTTTAGGGAACATTTGTATAAGGGTATCAAGCCTTTAAATATTTTAACGTGGAAGCAAAGATTAGAGATCTGCATCGGAGCTGCAAGAGGGCTTCACTACCTTCACACGGGGGCCAAGTACACCATCATTCATAGAGATGTCAAAACAACAAATATTCTCTTGGATGAAAACTGGAATGCCAAGGTATCAGATTTTGGGTTGTCAAAAACTGGTCCAGATTTGAACGCTGGCCATGTTAGTACTGTGGTGAAGGGTAGTTTTGGCTACTTGGATCCTGAGTACTTCAGGAGGCAACAATTGACTGAAAAGTCTGATGTCTACTCATTTGGGGTTGTCCTGTTTGAAGCCCTCTGTGCCAGGCCTGTTCTGAATCCTAATCTTCCAAAGGAACAAGTTAGTCTTGCAGAATGGGCATTGCTATGCAACCAAAAAGGAACGCTAGAGGATATTATTGACCCCAATCTCAAGGGAACAATAAATCCAGAAAGTTTGCAGAAGTTTGTGGACACAGCTGAAAAGTGTTTGTCGGATCACGGAGCTGATCGTCCCTCCATGAATGATCTGTTGTGGAATCTAGAATTTGCTCTCAACCTGCAAGAAAACAAGGATGGTTCAATTCACTCTGGAACAAGAACTAATGAAAATGAGTTTGAAGAAATAAATTTAGGAGACAGTGACATAGCAAACCATTATAAGAACCTAAGCCTTGGAGGTGAGCATGAGCTTAGCCAAGATGCTACTTCCAGTCAGGGTCCGACTGAAATCTTCTCACAACTTGTTAGTCCAAAAGGGCGATGA

Protein sequence

>Msa1038240

MHKHTSLLLYFVGISILLHGIHGASIEEPGSLILGCGLDEGGAKDEDGRQWSPDNKFLATQNGSTTFKAAYQDPSLSSVVPYMSARIFTSETTYKFNVQPDKRYWLRLHFYPSLYGTFNPSDSYFSVAANGITLLSNFSASITCQALSQAYIDREYSLAPLNSDTLTLTFKPSDKQNGTFAFVNGIQLIQMPELFDSASLVGFGDQTMDIKTLNLQTMFRLNVGGQYVSPSQDSGLSRMWYDDTPYLYGSSYGVTNEAKKDVLIDYQTMPKYIAPPTVYSTSRSMGTDKDVNMGYNLTWVFQVDPNSMYLARLHFCDFYYSKVNEIVFNIFLNNNTAQAQADVIGWTGGKGMTTYKDYVVYVQDGEGDEHLWLALHPAPDSKPQYYDAILNGVEIFKLNDTDLSGPNPQPSDMLLEGESQETGFHTHKSYDKKAVIGGAAGGAAGFAFMAAICIAVYNKKKRVPGAVTQTSWLPIYGNSHTNGSKSTSGKSTTSANLTAMAQGLCRYFSLQEIKHATNSFDESNVIGVGGFGKVYKGVIDNGMLVAIKRSNPQSEQGVNEFQTEIEMLSKLRHKHLVSLIGFCEEDNEMCLVYDYMALGTFREHLYKGIKPLNILTWKQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDENWNAKVSDFGLSKTGPDLNAGHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEALCARPVLNPNLPKEQVSLAEWALLCNQKGTLEDIIDPNLKGTINPESLQKFVDTAEKCLSDHGADRPSMNDLLWNLEFALNLQENKDGSIHSGTRTNENEFEEINLGDSDIANHYKNLSLGGEHELSQDATSSQGPTEIFSQLVSPKGR*