Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1038330 | XP_003626454.1 | 59.481 | 385 | 133 | 9 | 2 | 374 | 12 | 385 | 6.84e-118 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1038330 | sp|Q99090|CPRF2_PETCR | 39.779 | 362 | 196 | 10 | 18 | 365 | 28 | 381 | 2.53e-53 | 184 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1038330 | G7L1X5 | 59.481 | 385 | 133 | 9 | 2 | 374 | 12 | 385 | 3.27e-118 | 358 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1038330 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1038330 | MtrunA17_Chr7g0274141 | 59.481 | 385 | 133 | 9 | 2 | 374 | 12 | 385 | 6.29e-122 | 358 |
| Msa1038330 | MtrunA17_Chr1g0190761 | 49.530 | 319 | 134 | 11 | 65 | 365 | 82 | 391 | 3.74e-72 | 231 |
| Msa1038330 | MtrunA17_Chr3g0139301 | 36.296 | 135 | 77 | 4 | 134 | 262 | 76 | 207 | 1.25e-12 | 67.8 |
| Msa1038330 | MtrunA17_Chr1g0147491 | 42.500 | 120 | 66 | 2 | 153 | 271 | 142 | 259 | 3.03e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1038330 | AT5G28770.2 | 36.090 | 266 | 126 | 7 | 14 | 274 | 20 | 246 | 7.81e-27 | 109 |
| Msa1038330 | AT5G28770.1 | 34.962 | 266 | 122 | 6 | 14 | 274 | 20 | 239 | 1.17e-25 | 105 |
| Msa1038330 | AT4G02640.3 | 37.391 | 230 | 122 | 5 | 44 | 270 | 102 | 312 | 2.29e-22 | 98.2 |
| Msa1038330 | AT4G02640.2 | 37.391 | 230 | 122 | 5 | 44 | 270 | 102 | 312 | 2.70e-22 | 98.2 |
| Msa1038330 | AT4G02640.4 | 37.826 | 230 | 115 | 6 | 44 | 270 | 102 | 306 | 1.18e-21 | 96.3 |
| Msa1038330 | AT4G02640.1 | 37.826 | 230 | 115 | 6 | 44 | 270 | 102 | 306 | 1.48e-21 | 95.9 |
| Msa1038330 | AT5G24800.1 | 42.069 | 145 | 66 | 5 | 136 | 267 | 71 | 210 | 7.58e-21 | 91.7 |
| Msa1038330 | AT5G28770.3 | 34.694 | 245 | 116 | 7 | 14 | 253 | 20 | 225 | 5.45e-20 | 89.0 |
| Msa1038330 | AT3G54620.1 | 49.533 | 107 | 49 | 1 | 179 | 285 | 229 | 330 | 2.05e-17 | 83.6 |
Find 77 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCAGGATGCTCCAAAAT+AGG | 0.198060 | 7_1:-75144773 | Msa1038330:intron |
| GGGATCTTCTGGCAAATTTC+AGG | 0.205487 | 7_1:-75145260 | Msa1038330:CDS |
| GGACTTCAGCCTACTGTAAA+AGG | 0.236825 | 7_1:-75145196 | Msa1038330:intron |
| GATGTCTGCGGTCCAATTTC+AGG | 0.241352 | 7_1:+75145235 | None:intergenic |
| GTTTAGCTGATTCCCTATTT+TGG | 0.286405 | 7_1:+75144760 | None:intergenic |
| CCCTTCTGAATTACAAAATA+AGG | 0.310861 | 7_1:-75145072 | Msa1038330:CDS |
| AAATTTCAGGAGCCTGAAAT+TGG | 0.311695 | 7_1:-75145247 | Msa1038330:CDS |
| TCATGGAAATAGGGATCTTC+TGG | 0.322921 | 7_1:-75145271 | Msa1038330:intron |
| GAGAGATGTAAAAGATTAAC+TGG | 0.323266 | 7_1:-75144166 | Msa1038330:CDS |
| GGAGAGGTTAATATGAATAT+TGG | 0.345096 | 7_1:-75144945 | Msa1038330:CDS |
| AGGGGAAGAGAAAGCTTCTC+AGG | 0.359196 | 7_1:-75144967 | Msa1038330:CDS |
| GGCGCATTCAAGATCAAGTT+TGG | 0.367531 | 7_1:+75147402 | None:intergenic |
| GATATGAGAGGAGTCAATAA+TGG | 0.367652 | 7_1:-75143974 | Msa1038330:CDS |
| TATTAGGTCTCTACATTAAG+AGG | 0.369226 | 7_1:-75144626 | Msa1038330:intron |
| AAGATTAACTGGATCAATTC+CGG | 0.379673 | 7_1:-75144155 | Msa1038330:CDS |
| ACAACGGTGGAAGAAGTTAA+AGG | 0.389805 | 7_1:+75147496 | None:intergenic |
| ATTGATGTTGCCTCAGACAT+TGG | 0.396102 | 7_1:+75144118 | None:intergenic |
| TTTCAGGATGCTCCAAAATA+GGG | 0.416451 | 7_1:-75144772 | Msa1038330:intron |
| TATTATTGATTTAGAGAAAG+AGG | 0.417403 | 7_1:-75147446 | Msa1038330:CDS |
| GACATTGGATTATTAAAAGT+TGG | 0.427671 | 7_1:+75144004 | None:intergenic |
| AGAGGAGTCAATAATGGGTT+GGG | 0.448583 | 7_1:-75143968 | Msa1038330:CDS |
| CGCCGCCTTTACTATGACTT+GGG | 0.449163 | 7_1:-75147383 | Msa1038330:intron |
| GCAGCAGGATGGAACGAGAT+AGG | 0.450336 | 7_1:-75143905 | Msa1038330:CDS |
| CAAAGCTATCCACCCGCGGC+AGG | 0.455051 | 7_1:+75143870 | None:intergenic |
| TGAAACCTGTTGTCACAATC+AGG | 0.455873 | 7_1:-75145010 | Msa1038330:CDS |
| GACATGATCATAGTTGCTGC+TGG | 0.457615 | 7_1:-75145050 | Msa1038330:CDS |
| ATGGGAATGCCATTACTTGA+TGG | 0.462778 | 7_1:-75144097 | Msa1038330:CDS |
| AATGTCTGAGGCAACATCAA+TGG | 0.467879 | 7_1:-75144116 | Msa1038330:CDS |
| GGCTGAAGTCCAAGTTCATA+AGG | 0.469260 | 7_1:+75145208 | None:intergenic |
| GAGAGGAGTCAATAATGGGT+TGG | 0.473171 | 7_1:-75143969 | Msa1038330:CDS |
| ATGTCTGAGGCAACATCAAT+GGG | 0.480461 | 7_1:-75144115 | Msa1038330:CDS |
| ACATCTGATCCTTATGAACT+TGG | 0.480718 | 7_1:-75145217 | Msa1038330:CDS |
| TCAACGACAAGTGGATCCTC+AGG | 0.483871 | 7_1:-75144987 | Msa1038330:CDS |
| AAGGAGAAACAAGGATGAAT+CGG | 0.485200 | 7_1:-75147597 | Msa1038330:CDS |
| ATATGAGAGGAGTCAATAAT+GGG | 0.486438 | 7_1:-75143973 | Msa1038330:CDS |
| TTATTTGGATCTTCTTGCAC+AGG | 0.496001 | 7_1:+75144040 | None:intergenic |
| GCGCCGCCTTTACTATGACT+TGG | 0.497920 | 7_1:-75147384 | Msa1038330:CDS |
| GTTGACCTGATTGTGACAAC+AGG | 0.513826 | 7_1:+75145005 | None:intergenic |
| GGATAGCTTTGATCATCAGC+TGG | 0.514472 | 7_1:-75143858 | Msa1038330:CDS |
| ACAGGTTTCAGTGGCATGTA+GGG | 0.514510 | 7_1:+75145023 | None:intergenic |
| GTGCAGAAGAACACTGCAGC+AGG | 0.518310 | 7_1:-75143920 | Msa1038330:CDS |
| AACAAATTCCCTGCCGCGGG+TGG | 0.522410 | 7_1:-75143879 | Msa1038330:CDS |
| ATTGGCATTGCATTAAATGC+CGG | 0.535991 | 7_1:+75144136 | None:intergenic |
| GACTCCTCTCATATCATGAC+TGG | 0.537853 | 7_1:+75143982 | None:intergenic |
| CTCATATCATGACTGGACAT+TGG | 0.537888 | 7_1:+75143989 | None:intergenic |
| ATGTCGGATGCGAGGAACGA+AGG | 0.545841 | 7_1:-75147616 | Msa1038330:CDS |
| ACATGATCATAGTTGCTGCT+GGG | 0.551656 | 7_1:-75145049 | Msa1038330:CDS |
| CTGATGCAAAACGAGTTAAG+AGG | 0.557366 | 7_1:-75144911 | Msa1038330:intron |
| AGAGAAAGCTTCTCAGGGAG+AGG | 0.567096 | 7_1:-75144961 | Msa1038330:CDS |
| AAGAACAAATTCCCTGCCGC+GGG | 0.569746 | 7_1:-75143882 | Msa1038330:CDS |
| AACAGGTTTCAGTGGCATGT+AGG | 0.571055 | 7_1:+75145022 | None:intergenic |
| TTTGAGATTGTTATCAACAA+CGG | 0.580658 | 7_1:+75147480 | None:intergenic |
| ACAATCAGGTCAACGACAAG+TGG | 0.581189 | 7_1:-75144996 | Msa1038330:CDS |
| ACATACCCAAGTCATAGTAA+AGG | 0.581822 | 7_1:+75147378 | None:intergenic |
| GGAACAATATTTGTTGATGT+CGG | 0.586597 | 7_1:-75147632 | Msa1038330:CDS |
| GAAGGACTTCCATCAAGTAA+TGG | 0.591255 | 7_1:+75144088 | None:intergenic |
| TAATGCAATGCCAATGTCTG+AGG | 0.599128 | 7_1:-75144128 | Msa1038330:CDS |
| AAAGCTATCCACCCGCGGCA+GGG | 0.601789 | 7_1:+75143871 | None:intergenic |
| GGGGAAGAGAAAGCTTCTCA+GGG | 0.602774 | 7_1:-75144966 | Msa1038330:CDS |
| ATTTGTTGATGTCGGATGCG+AGG | 0.603239 | 7_1:-75147624 | Msa1038330:CDS |
| CATGATCATAGTTGCTGCTG+GGG | 0.605839 | 7_1:-75145048 | Msa1038330:CDS |
| AAATACTAAGCTTGAAACAC+AGG | 0.618412 | 7_1:-75144712 | Msa1038330:intron |
| GCATCAGCTGATAACTCAGA+AGG | 0.620964 | 7_1:+75144070 | None:intergenic |
| CAACGACAAGTGGATCCTCA+GGG | 0.625807 | 7_1:-75144986 | Msa1038330:CDS |
| CGAGGAACGAAGGAGAAACA+AGG | 0.627133 | 7_1:-75147606 | Msa1038330:CDS |
| ATTGTGACAACAGGTTTCAG+TGG | 0.628600 | 7_1:+75145014 | None:intergenic |
| GGAGTCAATAATGGGTTGGG+AGG | 0.632977 | 7_1:-75143965 | Msa1038330:CDS |
| GAAGAACAAATTCCCTGCCG+CGG | 0.646610 | 7_1:-75143883 | Msa1038330:CDS |
| AGAAGCTTTCTCTTCCCCTG+AGG | 0.650082 | 7_1:+75144971 | None:intergenic |
| TACCCAAGTCATAGTAAAGG+CGG | 0.652628 | 7_1:+75147381 | None:intergenic |
| ATGTCCAGTCATGATATGAG+AGG | 0.664118 | 7_1:-75143986 | Msa1038330:CDS |
| GAGATTGTTATCAACAACGG+TGG | 0.666033 | 7_1:+75147483 | None:intergenic |
| AGAAGAACACTGCAGCAGGA+TGG | 0.669756 | 7_1:-75143916 | Msa1038330:CDS |
| AACGACAAGTGGATCCTCAG+GGG | 0.710138 | 7_1:-75144985 | Msa1038330:CDS |
| TCATAAGGATCAGATGTCTG+CGG | 0.712592 | 7_1:+75145223 | None:intergenic |
| TGATCAAAGCTATCCACCCG+CGG | 0.714097 | 7_1:+75143866 | None:intergenic |
| AGTTGTGTAGCTGTAGAGTG+TGG | 0.745221 | 7_1:-75145095 | Msa1038330:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAAAAATTTTAATAAT+TGG | - | chr7_1:75144691-75144710 | Msa1038330:intron | 0.0% |
| !! | TATATTAAACTTAAATAGTT+AGG | + | chr7_1:75144368-75144387 | None:intergenic | 10.0% |
| !!! | TATTAAAATTTTTAAAAACC+GGG | + | chr7_1:75144689-75144708 | None:intergenic | 10.0% |
| !! | AAATAAGAATAAGAAATAAA+AGG | - | chr7_1:75145064-75145083 | Msa1038330:CDS | 10.0% |
| !! | AATTAATTATAAATCATCTT+GGG | - | chr7_1:75145263-75145282 | Msa1038330:intron | 10.0% |
| !!! | TAGTTAATTTTTTTTTTTGA+AGG | + | chr7_1:75145346-75145365 | None:intergenic | 10.0% |
| !!! | TTTAAAACATAATAATAAGT+TGG | + | chr7_1:75145508-75145527 | None:intergenic | 10.0% |
| !!! | ACATTTTTTTTTAATCAAAG+TGG | + | chr7_1:75144107-75144126 | None:intergenic | 15.0% |
| !!! | AGAAAAAAAATCATGAATTT+TGG | + | chr7_1:75144766-75144785 | None:intergenic | 15.0% |
| !! | GATGATTTATAATTAATTGA+CGG | + | chr7_1:75145261-75145280 | None:intergenic | 15.0% |
| !! | CAATTAATTATAAATCATCT+TGG | - | chr7_1:75145262-75145281 | Msa1038330:CDS | 15.0% |
| !! | ACATATATAATTTCTCTTTA+TGG | - | chr7_1:75145831-75145850 | Msa1038330:intron | 15.0% |
| !!! | TATTATTGATTTAGAGAAAG+AGG | - | chr7_1:75143993-75144012 | Msa1038330:CDS | 20.0% |
| !!! | ATTTTATGTGTATGAAAATC+AGG | - | chr7_1:75144169-75144188 | Msa1038330:CDS | 20.0% |
| !! | GATATAGTACTATCATATTA+CGG | - | chr7_1:75144309-75144328 | Msa1038330:intron | 20.0% |
| !! | TAAGAATAAGAAATAAAAGG+TGG | - | chr7_1:75145067-75145086 | Msa1038330:CDS | 20.0% |
| !!! | AAACATAATAATAAGTTGGT+TGG | + | chr7_1:75145504-75145523 | None:intergenic | 20.0% |
| !!! | TTCCTATATGTTTTGAATTA+TGG | - | chr7_1:75145804-75145823 | Msa1038330:intron | 20.0% |
| !! | TTCCATAATTCAAAACATAT+AGG | + | chr7_1:75145809-75145828 | None:intergenic | 20.0% |
| !! | TAAGCCAAAAATAAAATATG+AGG | + | chr7_1:75146082-75146101 | None:intergenic | 20.0% |
| !! | CAATTATATTCTTCAAAGTT+TGG | - | chr7_1:75146111-75146130 | Msa1038330:intron | 20.0% |
| !!! | TTTTCTTGTTCTAATATTCA+TGG | - | chr7_1:75146151-75146170 | Msa1038330:intron | 20.0% |
| !! | TTCTAATATTCATGGAAATA+GGG | - | chr7_1:75146159-75146178 | Msa1038330:intron | 20.0% |
| !! | TTAAATTGTTTATCCAAACA+TGG | - | chr7_1:75146621-75146640 | Msa1038330:intron | 20.0% |
| !! | ACATGATATTCTATCTTATT+AGG | - | chr7_1:75146797-75146816 | Msa1038330:intron | 20.0% |
| !! | GGTTGAAAAAAGAAATTATT+TGG | + | chr7_1:75147417-75147436 | None:intergenic | 20.0% |
| !! | TTTGAGATTGTTATCAACAA+CGG | + | chr7_1:75143962-75143981 | None:intergenic | 25.0% |
| !!! | ATCAGGTTTTATGAGAATAA+AGG | - | chr7_1:75144186-75144205 | Msa1038330:intron | 25.0% |
| !!! | AAGGAAAATTCTGAAATGAT+GGG | - | chr7_1:75144637-75144656 | Msa1038330:intron | 25.0% |
| ! | TTTCTCTATAAATAGAGACT+TGG | - | chr7_1:75144781-75144800 | Msa1038330:intron | 25.0% |
| ! | TGAAGATAGTGAAAAAAACT+TGG | + | chr7_1:75144836-75144855 | None:intergenic | 25.0% |
| ! | AATAAGAAATAAAAGGTGGT+GGG | - | chr7_1:75145071-75145090 | Msa1038330:CDS | 25.0% |
| ! | TGTTGAATGAAAAAAACCAT+TGG | - | chr7_1:75145100-75145119 | Msa1038330:intron | 25.0% |
| ! | GTCTAAGTAGAAAAACTATT+AGG | - | chr7_1:75145235-75145254 | Msa1038330:CDS | 25.0% |
| ! | AATATTGTTTAAGAAACCTG+AGG | - | chr7_1:75145298-75145317 | Msa1038330:intron | 25.0% |
| ! | TGTAAATCATAAACACTTCA+TGG | - | chr7_1:75145378-75145397 | Msa1038330:intron | 25.0% |
| !! | TAACATATTAGTTGATGTGT+CGG | - | chr7_1:75145411-75145430 | Msa1038330:intron | 25.0% |
| ! | TATGAAACAAAACAAGTTCA+AGG | + | chr7_1:75145574-75145593 | None:intergenic | 25.0% |
| !!! | TTTCATATCATGCTAGTTTT+TGG | - | chr7_1:75145587-75145606 | Msa1038330:intron | 25.0% |
| ! | CTAGAAGGTTAATTAGTTAA+AGG | + | chr7_1:75145648-75145667 | None:intergenic | 25.0% |
| !! | TTTAAAGTCACACACATTAA+TGG | + | chr7_1:75145910-75145929 | None:intergenic | 25.0% |
| ! | AAACATGTATAATGATGTGA+CGG | - | chr7_1:75145949-75145968 | Msa1038330:intron | 25.0% |
| !! | GTAAAGAGTTTTTATCTTGT+TGG | + | chr7_1:75145989-75146008 | None:intergenic | 25.0% |
| !!! | CATGCCTCATATTTTATTTT+TGG | - | chr7_1:75146075-75146094 | Msa1038330:intron | 25.0% |
| ! | GTTCTAATATTCATGGAAAT+AGG | - | chr7_1:75146158-75146177 | Msa1038330:intron | 25.0% |
| !!! | CCTTATTTTGTAATTCAGAA+GGG | + | chr7_1:75146370-75146389 | None:intergenic | 25.0% |
| !!! | TCCTTATTTTGTAATTCAGA+AGG | + | chr7_1:75146371-75146390 | None:intergenic | 25.0% |
| ! | TTAAGAGGTAACAATATTCT+AGG | - | chr7_1:75146543-75146562 | Msa1038330:intron | 25.0% |
| !!! | TTTTGAAACAATAAAAGCGA+AGG | - | chr7_1:75146923-75146942 | Msa1038330:intron | 25.0% |
| ! | GACATTGGATTATTAAAAGT+TGG | + | chr7_1:75147438-75147457 | None:intergenic | 25.0% |
| ! | GGAACAATATTTGTTGATGT+CGG | - | chr7_1:75143807-75143826 | Msa1038330:CDS | 30.0% |
| !! | GGTTTTATGAGAATAAAGGT+AGG | - | chr7_1:75144190-75144209 | Msa1038330:intron | 30.0% |
| TTATGAGAATAAAGGTAGGT+TGG | - | chr7_1:75144194-75144213 | Msa1038330:intron | 30.0% | |
| TATAAAAAGCAACAGACTTG+TGG | + | chr7_1:75144284-75144303 | None:intergenic | 30.0% | |
| !! | GAAGGAAAATTCTGAAATGA+TGG | - | chr7_1:75144636-75144655 | Msa1038330:intron | 30.0% |
| !! | AGGAAAATTCTGAAATGATG+GGG | - | chr7_1:75144638-75144657 | Msa1038330:intron | 30.0% |
| GAATAAGAAATAAAAGGTGG+TGG | - | chr7_1:75145070-75145089 | Msa1038330:CDS | 30.0% | |
| ATAAGAAATAAAAGGTGGTG+GGG | - | chr7_1:75145072-75145091 | Msa1038330:CDS | 30.0% | |
| AATGAAAAAAACCATTGGAG+AGG | - | chr7_1:75145105-75145124 | Msa1038330:intron | 30.0% | |
| TTAAGAGAGAGAAAATGATG+TGG | - | chr7_1:75145150-75145169 | Msa1038330:intron | 30.0% | |
| GTTAGTTAATTATCATCCTC+AGG | + | chr7_1:75145317-75145336 | None:intergenic | 30.0% | |
| AAATCATAAACACTTCATGG+AGG | - | chr7_1:75145381-75145400 | Msa1038330:intron | 30.0% | |
| !! | GATTAAGAAGCATTACTAGA+AGG | + | chr7_1:75145684-75145703 | None:intergenic | 30.0% |
| CTAGTAATGCTTCTTAATCA+TGG | - | chr7_1:75145685-75145704 | Msa1038330:intron | 30.0% | |
| AGCTACATATGAAAAAGAAC+GGG | + | chr7_1:75145721-75145740 | None:intergenic | 30.0% | |
| CAGCTACATATGAAAAAGAA+CGG | + | chr7_1:75145722-75145741 | None:intergenic | 30.0% | |
| ! | CAATTCAAACCTTTTACAGT+AGG | + | chr7_1:75146255-75146274 | None:intergenic | 30.0% |
| CCCTTCTGAATTACAAAATA+AGG | - | chr7_1:75146367-75146386 | Msa1038330:intron | 30.0% | |
| GGAGAGGTTAATATGAATAT+TGG | - | chr7_1:75146494-75146513 | Msa1038330:intron | 30.0% | |
| AAATACTAAGCTTGAAACAC+AGG | - | chr7_1:75146727-75146746 | Msa1038330:intron | 30.0% | |
| TATTAGGTCTCTACATTAAG+AGG | - | chr7_1:75146813-75146832 | Msa1038330:intron | 30.0% | |
| GTGACTACTTAGATTAAGAT+TGG | - | chr7_1:75147060-75147079 | Msa1038330:intron | 30.0% | |
| !! | TGCTTTGAAGAATCAAAATC+AGG | - | chr7_1:75147104-75147123 | Msa1038330:intron | 30.0% |
| GAGAGATGTAAAAGATTAAC+TGG | - | chr7_1:75147273-75147292 | Msa1038330:intron | 30.0% | |
| AAGATTAACTGGATCAATTC+CGG | - | chr7_1:75147284-75147303 | Msa1038330:intron | 30.0% | |
| ATATGAGAGGAGTCAATAAT+GGG | - | chr7_1:75147466-75147485 | Msa1038330:CDS | 30.0% | |
| AAGGAGAAACAAGGATGAAT+CGG | - | chr7_1:75143842-75143861 | Msa1038330:CDS | 35.0% | |
| ! | AGATTTTCTGCAGTGTCTAA+AGG | - | chr7_1:75143879-75143898 | Msa1038330:CDS | 35.0% |
| ACATACCCAAGTCATAGTAA+AGG | + | chr7_1:75144064-75144083 | None:intergenic | 35.0% | |
| !! | AGAATAAAGGTAGGTTGGTT+AGG | - | chr7_1:75144199-75144218 | Msa1038330:intron | 35.0% |
| !! | GAATAAAGGTAGGTTGGTTA+GGG | - | chr7_1:75144200-75144219 | Msa1038330:intron | 35.0% |
| TAGTTAGGTTATGTGTGTTG+CGG | + | chr7_1:75144353-75144372 | None:intergenic | 35.0% | |
| GCGGTTAAACAATGTTGAAT+GGG | + | chr7_1:75144525-75144544 | None:intergenic | 35.0% | |
| AGCGGTTAAACAATGTTGAA+TGG | + | chr7_1:75144526-75144545 | None:intergenic | 35.0% | |
| !! | TTGCGATTATATTGGTTTCC+CGG | - | chr7_1:75144668-75144687 | Msa1038330:intron | 35.0% |
| ! | GAGACTTGGTTCATTTGATT+TGG | - | chr7_1:75144795-75144814 | Msa1038330:intron | 35.0% |
| ! | TTCAACTTTTACCTCTCCAA+TGG | + | chr7_1:75145119-75145138 | None:intergenic | 35.0% |
| ! | AGAAAATGATGTGGAGTGTT+GGG | - | chr7_1:75145159-75145178 | Msa1038330:intron | 35.0% |
| ! | AGTGTTGGGAATTGAAAAAG+TGG | - | chr7_1:75145173-75145192 | Msa1038330:intron | 35.0% |
| GTGTTGGGAATTGAAAAAGT+GGG | - | chr7_1:75145174-75145193 | Msa1038330:intron | 35.0% | |
| !! | ATTGAAAAAGTGGGTGTTGA+AGG | - | chr7_1:75145183-75145202 | Msa1038330:intron | 35.0% |
| !! | TTGAAAAAGTGGGTGTTGAA+GGG | - | chr7_1:75145184-75145203 | Msa1038330:intron | 35.0% |
| ! | AAGAGTATAACCATTGTGCA+TGG | - | chr7_1:75145213-75145232 | Msa1038330:CDS | 35.0% |
| !! | GGTTAAGAAGCATTACTAGA+AGG | + | chr7_1:75145663-75145682 | None:intergenic | 35.0% |
| GCTACATATGAAAAAGAACG+GGG | + | chr7_1:75145720-75145739 | None:intergenic | 35.0% | |
| TTCTCTTTATGGCTAGACTT+TGG | - | chr7_1:75145842-75145861 | Msa1038330:intron | 35.0% | |
| TATCCTTGAAACGCAGTAAA+TGG | + | chr7_1:75146048-75146067 | None:intergenic | 35.0% | |
| AAATTTCAGGAGCCTGAAAT+TGG | - | chr7_1:75146192-75146211 | Msa1038330:intron | 35.0% | |
| ACATCTGATCCTTATGAACT+TGG | - | chr7_1:75146222-75146241 | Msa1038330:intron | 35.0% | |
| AGAAGTAGAACTCATTTGCA+TGG | - | chr7_1:75146306-75146325 | Msa1038330:intron | 35.0% | |
| GAAGTAGAACTCATTTGCAT+GGG | - | chr7_1:75146307-75146326 | Msa1038330:intron | 35.0% | |
| ! | TCTTAACTCGTTTTGCATCA+GGG | + | chr7_1:75146529-75146548 | None:intergenic | 35.0% |
| TTAGGCATTAAGACCATGTT+TGG | + | chr7_1:75146637-75146656 | None:intergenic | 35.0% | |
| TTTCAGGATGCTCCAAAATA+GGG | - | chr7_1:75146667-75146686 | Msa1038330:intron | 35.0% | |
| !! | GTTTAGCTGATTCCCTATTT+TGG | + | chr7_1:75146682-75146701 | None:intergenic | 35.0% |
| GATCAATACTCTATGCAAAC+CGG | - | chr7_1:75147002-75147021 | Msa1038330:intron | 35.0% | |
| ! | TAAGCTTAACTAAGGCATTC+CGG | + | chr7_1:75147024-75147043 | None:intergenic | 35.0% |
| TATATCAGATTCCTTCCAGT+TGG | + | chr7_1:75147201-75147220 | None:intergenic | 35.0% | |
| ! | ATCTGACATGCTCATTTTGA+AGG | - | chr7_1:75147236-75147255 | Msa1038330:intron | 35.0% |
| ATTGGCATTGCATTAAATGC+CGG | + | chr7_1:75147306-75147325 | None:intergenic | 35.0% | |
| TTATTTGGATCTTCTTGCAC+AGG | + | chr7_1:75147402-75147421 | None:intergenic | 35.0% | |
| GATATGAGAGGAGTCAATAA+TGG | - | chr7_1:75147465-75147484 | Msa1038330:CDS | 35.0% | |
| ACAACGGTGGAAGAAGTTAA+AGG | + | chr7_1:75143946-75143965 | None:intergenic | 40.0% | |
| GAGATTGTTATCAACAACGG+TGG | + | chr7_1:75143959-75143978 | None:intergenic | 40.0% | |
| TACCCAAGTCATAGTAAAGG+CGG | + | chr7_1:75144061-75144080 | None:intergenic | 40.0% | |
| TATTACGGTCTCTTACACAG+TGG | - | chr7_1:75144324-75144343 | Msa1038330:intron | 40.0% | |
| AGTTAGGTTATGTGTGTTGC+GGG | + | chr7_1:75144352-75144371 | None:intergenic | 40.0% | |
| AACAAGTGATGAAGCTGCAA+TGG | - | chr7_1:75144452-75144471 | Msa1038330:intron | 40.0% | |
| GACACGTGTTGCGATTATAT+TGG | - | chr7_1:75144660-75144679 | Msa1038330:intron | 40.0% | |
| GAGAAAATGATGTGGAGTGT+TGG | - | chr7_1:75145158-75145177 | Msa1038330:intron | 40.0% | |
| TCTACTTAGACCATGCACAA+TGG | + | chr7_1:75145226-75145245 | None:intergenic | 40.0% | |
| TCTTTATGGCTAGACTTTGG+AGG | - | chr7_1:75145845-75145864 | Msa1038330:intron | 40.0% | |
| CTTTATGGCTAGACTTTGGA+GGG | - | chr7_1:75145846-75145865 | Msa1038330:intron | 40.0% | |
| ! | ATGGTTGTGATGTGCTGATA+GGG | + | chr7_1:75145891-75145910 | None:intergenic | 40.0% |
| ! | AATGGTTGTGATGTGCTGAT+AGG | + | chr7_1:75145892-75145911 | None:intergenic | 40.0% |
| TCATGGAAATAGGGATCTTC+TGG | - | chr7_1:75146168-75146187 | Msa1038330:intron | 40.0% | |
| TCATAAGGATCAGATGTCTG+CGG | + | chr7_1:75146219-75146238 | None:intergenic | 40.0% | |
| ACATGATCATAGTTGCTGCT+GGG | - | chr7_1:75146390-75146409 | Msa1038330:intron | 40.0% | |
| ATTGTGACAACAGGTTTCAG+TGG | + | chr7_1:75146428-75146447 | None:intergenic | 40.0% | |
| TGAAACCTGTTGTCACAATC+AGG | - | chr7_1:75146429-75146448 | Msa1038330:intron | 40.0% | |
| ! | CTCTTAACTCGTTTTGCATC+AGG | + | chr7_1:75146530-75146549 | None:intergenic | 40.0% |
| CTGATGCAAAACGAGTTAAG+AGG | - | chr7_1:75146528-75146547 | Msa1038330:intron | 40.0% | |
| TCCTGAAAGGCAATGTCATT+AGG | + | chr7_1:75146655-75146674 | None:intergenic | 40.0% | |
| !!! | CTATTTTGGAGCATCCTGAA+AGG | + | chr7_1:75146668-75146687 | None:intergenic | 40.0% |
| CTTTCAGGATGCTCCAAAAT+AGG | - | chr7_1:75146666-75146685 | Msa1038330:intron | 40.0% | |
| TGACTGCGTAAGCTTAACTA+AGG | + | chr7_1:75147032-75147051 | None:intergenic | 40.0% | |
| GGATGTTCAAGATTCATCCT+CGG | - | chr7_1:75147081-75147100 | Msa1038330:intron | 40.0% | |
| !! | TTTGATTCTTCAAAGCACCG+AGG | + | chr7_1:75147101-75147120 | None:intergenic | 40.0% |
| ! | GGTTGCTATTGGATTCAGAT+CGG | + | chr7_1:75147147-75147166 | None:intergenic | 40.0% |
| GAATGCAGCAATATTCCAAC+TGG | - | chr7_1:75147183-75147202 | Msa1038330:intron | 40.0% | |
| !! | GCTCATTTTGAAGGTGAATG+CGG | - | chr7_1:75147245-75147264 | Msa1038330:intron | 40.0% |
| TAATGCAATGCCAATGTCTG+AGG | - | chr7_1:75147311-75147330 | Msa1038330:intron | 40.0% | |
| ATTGATGTTGCCTCAGACAT+TGG | + | chr7_1:75147324-75147343 | None:intergenic | 40.0% | |
| ! | AATGTCTGAGGCAACATCAA+TGG | - | chr7_1:75147323-75147342 | Msa1038330:intron | 40.0% |
| ! | ATGTCTGAGGCAACATCAAT+GGG | - | chr7_1:75147324-75147343 | Msa1038330:intron | 40.0% |
| ATGGGAATGCCATTACTTGA+TGG | - | chr7_1:75147342-75147361 | Msa1038330:intron | 40.0% | |
| GAAGGACTTCCATCAAGTAA+TGG | + | chr7_1:75147354-75147373 | None:intergenic | 40.0% | |
| CTCATATCATGACTGGACAT+TGG | + | chr7_1:75147453-75147472 | None:intergenic | 40.0% | |
| ATGTCCAGTCATGATATGAG+AGG | - | chr7_1:75147453-75147472 | Msa1038330:CDS | 40.0% | |
| !! | AGAGGAGTCAATAATGGGTT+GGG | - | chr7_1:75147471-75147490 | Msa1038330:CDS | 40.0% |
| ! | CATCAGCTGGATTCTTTTTG+TGG | - | chr7_1:75147594-75147613 | Msa1038330:CDS | 40.0% |
| ! | ATTTGTTGATGTCGGATGCG+AGG | - | chr7_1:75143815-75143834 | Msa1038330:CDS | 45.0% |
| GGCGCATTCAAGATCAAGTT+TGG | + | chr7_1:75144040-75144059 | None:intergenic | 45.0% | |
| !! | AACCATTGCAGCTGGTCTTA+GGG | + | chr7_1:75144414-75144433 | None:intergenic | 45.0% |
| TTCAACACAACCATTGCAGC+TGG | + | chr7_1:75144422-75144441 | None:intergenic | 45.0% | |
| AGCTGCAATGGCATGTTGAA+TGG | - | chr7_1:75144464-75144483 | Msa1038330:intron | 45.0% | |
| GCTGCAATGGCATGTTGAAT+GGG | - | chr7_1:75144465-75144484 | Msa1038330:intron | 45.0% | |
| CTGCAATGGCATGTTGAATG+GGG | - | chr7_1:75144466-75144485 | Msa1038330:intron | 45.0% | |
| AATGGGGTTGAGAGATGACA+TGG | - | chr7_1:75144482-75144501 | Msa1038330:intron | 45.0% | |
| TTTAACCGCTGACAGACACA+GGG | - | chr7_1:75144536-75144555 | Msa1038330:CDS | 45.0% | |
| CCTTGAAACGCAGTAAATGG+AGG | + | chr7_1:75146045-75146064 | None:intergenic | 45.0% | |
| CCTCCATTTACTGCGTTTCA+AGG | - | chr7_1:75146042-75146061 | Msa1038330:intron | 45.0% | |
| GGGATCTTCTGGCAAATTTC+AGG | - | chr7_1:75146179-75146198 | Msa1038330:intron | 45.0% | |
| GGCTGAAGTCCAAGTTCATA+AGG | + | chr7_1:75146234-75146253 | None:intergenic | 45.0% | |
| GGACTTCAGCCTACTGTAAA+AGG | - | chr7_1:75146243-75146262 | Msa1038330:intron | 45.0% | |
| AGTTGTGTAGCTGTAGAGTG+TGG | - | chr7_1:75146344-75146363 | Msa1038330:intron | 45.0% | |
| GACATGATCATAGTTGCTGC+TGG | - | chr7_1:75146389-75146408 | Msa1038330:intron | 45.0% | |
| CATGATCATAGTTGCTGCTG+GGG | - | chr7_1:75146391-75146410 | Msa1038330:intron | 45.0% | |
| ACAGGTTTCAGTGGCATGTA+GGG | + | chr7_1:75146419-75146438 | None:intergenic | 45.0% | |
| AACAGGTTTCAGTGGCATGT+AGG | + | chr7_1:75146420-75146439 | None:intergenic | 45.0% | |
| GTTGACCTGATTGTGACAAC+AGG | + | chr7_1:75146437-75146456 | None:intergenic | 45.0% | |
| ACAATCAGGTCAACGACAAG+TGG | - | chr7_1:75146443-75146462 | Msa1038330:intron | 45.0% | |
| GCCTAATGACATTGCCTTTC+AGG | - | chr7_1:75146651-75146670 | Msa1038330:intron | 45.0% | |
| CAGAGATCAGAGAAGAGACT+TGG | + | chr7_1:75146777-75146796 | None:intergenic | 45.0% | |
| GCAGCAATATTCCAACTGGA+AGG | - | chr7_1:75147187-75147206 | Msa1038330:intron | 45.0% | |
| GCATCAGCTGATAACTCAGA+AGG | + | chr7_1:75147372-75147391 | None:intergenic | 45.0% | |
| GACTCCTCTCATATCATGAC+TGG | + | chr7_1:75147460-75147479 | None:intergenic | 45.0% | |
| !! | GAGAGGAGTCAATAATGGGT+TGG | - | chr7_1:75147470-75147489 | Msa1038330:CDS | 45.0% |
| !! | GGATAGCTTTGATCATCAGC+TGG | - | chr7_1:75147581-75147600 | Msa1038330:CDS | 45.0% |
| !!! | AACTAAATTTTATTAATTTA+GGG | + | chr7_1:75144140-75144159 | None:intergenic | 5.0% |
| !!! | AAACTAAATTTTATTAATTT+AGG | + | chr7_1:75144141-75144160 | None:intergenic | 5.0% |
| !!! | TTATTAAAATTTTTAAAAAC+CGG | + | chr7_1:75144690-75144709 | None:intergenic | 5.0% |
| CGAGGAACGAAGGAGAAACA+AGG | - | chr7_1:75143833-75143852 | Msa1038330:CDS | 50.0% | |
| CGCCGCCTTTACTATGACTT+GGG | - | chr7_1:75144056-75144075 | Msa1038330:CDS | 50.0% | |
| TTCCCTAAGACCAGCTGCAA+TGG | - | chr7_1:75144409-75144428 | Msa1038330:intron | 50.0% | |
| !! | CAACCATTGCAGCTGGTCTT+AGG | + | chr7_1:75144415-75144434 | None:intergenic | 50.0% |
| GTTTAACCGCTGACAGACAC+AGG | - | chr7_1:75144535-75144554 | Msa1038330:CDS | 50.0% | |
| AGCAAGCTATTGGCCAAGCA+TGG | - | chr7_1:75144568-75144587 | Msa1038330:CDS | 50.0% | |
| GATGTCTGCGGTCCAATTTC+AGG | + | chr7_1:75146207-75146226 | None:intergenic | 50.0% | |
| TCAACGACAAGTGGATCCTC+AGG | - | chr7_1:75146452-75146471 | Msa1038330:intron | 50.0% | |
| CAACGACAAGTGGATCCTCA+GGG | - | chr7_1:75146453-75146472 | Msa1038330:intron | 50.0% | |
| AACGACAAGTGGATCCTCAG+GGG | - | chr7_1:75146454-75146473 | Msa1038330:intron | 50.0% | |
| AGAAGCTTTCTCTTCCCCTG+AGG | + | chr7_1:75146471-75146490 | None:intergenic | 50.0% | |
| AGGGGAAGAGAAAGCTTCTC+AGG | - | chr7_1:75146472-75146491 | Msa1038330:intron | 50.0% | |
| GGGGAAGAGAAAGCTTCTCA+GGG | - | chr7_1:75146473-75146492 | Msa1038330:intron | 50.0% | |
| AGAGAAAGCTTCTCAGGGAG+AGG | - | chr7_1:75146478-75146497 | Msa1038330:intron | 50.0% | |
| AAGCTTACGCAGTCAGCACA+TGG | - | chr7_1:75147037-75147056 | Msa1038330:intron | 50.0% | |
| AGCTTACGCAGTCAGCACAT+GGG | - | chr7_1:75147038-75147057 | Msa1038330:intron | 50.0% | |
| !! | GTCAGCGCATTGGTTGCTAT+TGG | + | chr7_1:75147158-75147177 | None:intergenic | 50.0% |
| !! | GGAGTCAATAATGGGTTGGG+AGG | - | chr7_1:75147474-75147493 | Msa1038330:CDS | 50.0% |
| AGAAGAACACTGCAGCAGGA+TGG | - | chr7_1:75147523-75147542 | Msa1038330:CDS | 50.0% | |
| GAAGAACAAATTCCCTGCCG+CGG | - | chr7_1:75147556-75147575 | Msa1038330:CDS | 50.0% | |
| AAGAACAAATTCCCTGCCGC+GGG | - | chr7_1:75147557-75147576 | Msa1038330:CDS | 50.0% | |
| TGATCAAAGCTATCCACCCG+CGG | + | chr7_1:75147576-75147595 | None:intergenic | 50.0% | |
| ATGTCGGATGCGAGGAACGA+AGG | - | chr7_1:75143823-75143842 | Msa1038330:CDS | 55.0% | |
| GCGCCGCCTTTACTATGACT+TGG | - | chr7_1:75144055-75144074 | Msa1038330:CDS | 55.0% | |
| GGGGTTGAGAGATGACATGG+AGG | - | chr7_1:75144485-75144504 | Msa1038330:intron | 55.0% | |
| GACACGCGGAAGCAAGCTAT+TGG | - | chr7_1:75144558-75144577 | Msa1038330:CDS | 55.0% | |
| CATTCACGCAGTCAGCGCAT+TGG | + | chr7_1:75147168-75147187 | None:intergenic | 55.0% | |
| GTGCAGAAGAACACTGCAGC+AGG | - | chr7_1:75147519-75147538 | Msa1038330:CDS | 55.0% | |
| GCAGCAGGATGGAACGAGAT+AGG | - | chr7_1:75147534-75147553 | Msa1038330:CDS | 55.0% | |
| CGTGTCCCTGTGTCTGTCAG+CGG | + | chr7_1:75144544-75144563 | None:intergenic | 60.0% | |
| CTGACAGACACAGGGACACG+CGG | - | chr7_1:75144544-75144563 | Msa1038330:CDS | 60.0% | |
| TGTTGCACACGCGCCATGCT+TGG | + | chr7_1:75144584-75144603 | None:intergenic | 60.0% | |
| GCAGGAGAGGCAGAGAGAGA+AGG | - | chr7_1:75144618-75144637 | Msa1038330:CDS | 60.0% | |
| AACAAATTCCCTGCCGCGGG+TGG | - | chr7_1:75147560-75147579 | Msa1038330:CDS | 60.0% | |
| AAAGCTATCCACCCGCGGCA+GGG | + | chr7_1:75147571-75147590 | None:intergenic | 60.0% | |
| GTGTGCAACACGCGCGAGTG+TGG | - | chr7_1:75144594-75144613 | Msa1038330:CDS | 65.0% | |
| AACACGCGCGAGTGTGGTGC+AGG | - | chr7_1:75144600-75144619 | Msa1038330:CDS | 65.0% | |
| CAAAGCTATCCACCCGCGGC+AGG | + | chr7_1:75147572-75147591 | None:intergenic | 65.0% | |
| GCGCGAGTGTGGTGCAGGAG+AGG | - | chr7_1:75144605-75144624 | Msa1038330:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 75143805 | 75147656 | 75143805 | ID=Msa1038330;Name=Msa1038330 |
| chr7_1 | mRNA | 75143805 | 75147656 | 75143805 | ID=Msa1038330-mRNA-1;Parent=Msa1038330;Name=Msa1038330-mRNA-1;_AED=0.08;_eAED=0.09;_QI=0|0|0|1|1|1|6|0|384 |
| chr7_1 | exon | 75147384 | 75147656 | 75147384 | ID=Msa1038330-mRNA-1:exon:19138;Parent=Msa1038330-mRNA-1 |
| chr7_1 | exon | 75145197 | 75145281 | 75145197 | ID=Msa1038330-mRNA-1:exon:19137;Parent=Msa1038330-mRNA-1 |
| chr7_1 | exon | 75144912 | 75145107 | 75144912 | ID=Msa1038330-mRNA-1:exon:19136;Parent=Msa1038330-mRNA-1 |
| chr7_1 | exon | 75144713 | 75144788 | 75144713 | ID=Msa1038330-mRNA-1:exon:19135;Parent=Msa1038330-mRNA-1 |
| chr7_1 | exon | 75144517 | 75144642 | 75144517 | ID=Msa1038330-mRNA-1:exon:19134;Parent=Msa1038330-mRNA-1 |
| chr7_1 | exon | 75143805 | 75144203 | 75143805 | ID=Msa1038330-mRNA-1:exon:19133;Parent=Msa1038330-mRNA-1 |
| chr7_1 | CDS | 75147384 | 75147656 | 75147384 | ID=Msa1038330-mRNA-1:cds;Parent=Msa1038330-mRNA-1 |
| chr7_1 | CDS | 75145197 | 75145281 | 75145197 | ID=Msa1038330-mRNA-1:cds;Parent=Msa1038330-mRNA-1 |
| chr7_1 | CDS | 75144912 | 75145107 | 75144912 | ID=Msa1038330-mRNA-1:cds;Parent=Msa1038330-mRNA-1 |
| chr7_1 | CDS | 75144713 | 75144788 | 75144713 | ID=Msa1038330-mRNA-1:cds;Parent=Msa1038330-mRNA-1 |
| chr7_1 | CDS | 75144517 | 75144642 | 75144517 | ID=Msa1038330-mRNA-1:cds;Parent=Msa1038330-mRNA-1 |
| chr7_1 | CDS | 75143805 | 75144203 | 75143805 | ID=Msa1038330-mRNA-1:cds;Parent=Msa1038330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
