AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1040560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1040560 MtrunA17_Chr7g0270831 88.222 450 27 8 1 441 1 433 0.0 750
Msa1040560 MtrunA17_Chr4g0075201 41.798 445 190 14 30 410 39 478 8.34e-78 250
Msa1040560 MtrunA17_Chr2g0288871 40.506 474 178 14 32 410 67 531 6.58e-77 249
Msa1040560 MtrunA17_Chr2g0322391 39.387 424 172 11 71 410 135 557 5.86e-76 248
Msa1040560 MtrunA17_Chr3g0099641 38.085 449 197 14 15 408 22 444 2.49e-72 235
Msa1040560 MtrunA17_Chr2g0302391 34.688 369 178 10 94 418 66 415 5.17e-55 188
Msa1040560 MtrunA17_Chr4g0025051 61.184 152 58 1 200 350 320 471 1.76e-53 188
Msa1040560 MtrunA17_Chr4g0025061 55.952 168 71 2 186 350 329 496 4.36e-52 184
Msa1040560 MtrunA17_Chr4g0024391 45.532 235 101 5 200 412 214 443 5.22e-52 182
Msa1040560 MtrunA17_Chr7g0216891 30.247 486 199 13 75 427 25 503 3.83e-50 179
Msa1040560 MtrunA17_Chr4g0051181 40.873 252 112 4 197 411 225 476 1.30e-41 154
Msa1040560 MtrunA17_Chr4g0060271 55.280 161 58 2 189 335 229 389 2.83e-39 149
Msa1040560 MtrunA17_Chr1g0150271 34.314 204 94 5 94 285 6 181 9.25e-31 119
Msa1040560 MtrunA17_Chr4g0001361 28.889 315 160 8 100 405 51 310 3.51e-29 116
Msa1040560 MtrunA17_Chr2g0333851 29.283 321 153 12 94 405 54 309 3.06e-28 113
Msa1040560 MtrunA17_Chr1g0150281 28.035 346 165 10 71 408 6 275 3.66e-27 110
Msa1040560 MtrunA17_Chr5g0419241 85.417 48 7 0 198 245 60 107 1.64e-25 100
Msa1040560 MtrunA17_Chr5g0445311 46.939 98 47 2 187 280 332 428 4.42e-24 104
Msa1040560 MtrunA17_Chr5g0445311 43.421 76 37 3 216 291 201 270 6.83e-11 64.3
Msa1040560 MtrunA17_Chr3g0136961 28.125 320 157 10 99 408 29 285 7.23e-24 100
Msa1040560 MtrunA17_Chr3g0101131 51.852 81 38 1 197 277 397 476 4.77e-23 102
Msa1040560 MtrunA17_Chr7g0270191 36.667 150 69 4 199 328 129 272 1.21e-22 97.4
Msa1040560 MtrunA17_Chr7g0218081 51.163 86 41 1 202 287 397 481 1.96e-22 99.8
Msa1040560 MtrunA17_Chr7g0218081 51.667 60 27 2 216 275 229 286 2.41e-12 68.9
Msa1040560 MtrunA17_Chr7g0249311 36.875 160 89 5 145 295 313 469 2.26e-22 100
Msa1040560 MtrunA17_Chr7g0249311 50.000 60 28 2 216 275 180 237 5.74e-12 67.8
Msa1040560 MtrunA17_Chr7g0224801 46.988 83 43 1 204 286 82 163 3.01e-22 93.2
Msa1040560 MtrunA17_Chr3g0106491 51.948 77 36 1 199 275 349 424 3.37e-22 99.0
Msa1040560 MtrunA17_Chr3g0106491 50.000 62 29 2 216 277 199 258 8.80e-13 70.1
Msa1040560 MtrunA17_Chr1g0150801 51.351 74 35 1 200 273 87 159 5.47e-22 92.4
Msa1040560 MtrunA17_Chr3g0079691 49.398 83 41 1 198 280 478 559 9.04e-22 98.2
Msa1040560 MtrunA17_Chr3g0079691 52.459 61 27 2 216 276 281 339 1.21e-13 73.2
Msa1040560 MtrunA17_Chr8g0386241 43.902 82 45 1 200 281 88 168 9.61e-22 92.0
Msa1040560 MtrunA17_Chr4g0004911 51.948 77 36 1 199 275 320 395 1.01e-21 97.4
Msa1040560 MtrunA17_Chr4g0004911 35.577 104 62 2 185 284 150 252 5.69e-15 77.0
Msa1040560 MtrunA17_Chr7g0243891 44.538 119 52 4 161 277 329 435 1.13e-21 97.4
Msa1040560 MtrunA17_Chr7g0243891 40.000 85 40 3 216 291 217 299 2.04e-11 65.9
Msa1040560 MtrunA17_Chr4g0042831 42.727 110 62 1 186 295 249 357 1.44e-21 95.9
Msa1040560 MtrunA17_Chr4g0042831 40.964 83 47 2 216 298 146 226 7.48e-11 63.5
Msa1040560 MtrunA17_Chr5g0418191 45.918 98 52 1 202 299 307 403 1.68e-21 96.3
Msa1040560 MtrunA17_Chr5g0418191 35.238 105 66 2 216 320 152 254 1.02e-12 69.7
Msa1040560 MtrunA17_Chr5g0447701 48.235 85 43 1 200 284 237 320 1.84e-21 95.9
Msa1040560 MtrunA17_Chr5g0447701 35.714 112 63 4 184 292 62 167 1.30e-12 68.9
Msa1040560 MtrunA17_Chr2g0294231 50.649 77 37 1 199 275 187 262 2.07e-21 95.5
Msa1040560 MtrunA17_Chr7g0249301 45.556 90 45 2 191 277 265 353 5.02e-21 94.4
Msa1040560 MtrunA17_Chr7g0249301 47.692 65 32 2 211 275 58 120 1.52e-12 68.9
Msa1040560 MtrunA17_Chr5g0432161 44.828 87 47 1 199 285 405 490 1.46e-20 94.4
Msa1040560 MtrunA17_Chr5g0432161 48.333 60 29 2 216 275 245 302 2.55e-12 68.9
Msa1040560 MtrunA17_Chr4g0051881 46.535 101 42 3 202 297 165 258 1.86e-20 92.0
Msa1040560 MtrunA17_Chr1g0194481 50.649 77 37 1 199 275 142 217 3.31e-20 91.3
Msa1040560 MtrunA17_Chr4g0068541 47.059 85 43 2 199 283 192 274 2.24e-19 89.7
Msa1040560 MtrunA17_Chr8g0383251 44.595 74 40 1 202 275 95 167 6.02e-19 84.3
Msa1040560 MtrunA17_Chr7g0263531 47.945 73 37 1 203 275 349 420 7.70e-19 88.6
Msa1040560 MtrunA17_Chr7g0263531 50.000 60 28 2 216 275 190 247 7.38e-12 67.0
Msa1040560 MtrunA17_Chr5g0418781 40.708 113 54 3 160 272 81 180 1.38e-18 85.5
Msa1040560 MtrunA17_Chr4g0074001 49.367 79 39 1 197 275 341 418 1.74e-18 87.8
Msa1040560 MtrunA17_Chr7g0248721 38.406 138 58 4 161 273 62 197 2.71e-18 83.6
Msa1040560 MtrunA17_Chr7g0270051 49.296 71 36 0 213 283 51 121 3.98e-18 84.0
Msa1040560 MtrunA17_Chr8g0379461 49.412 85 41 2 196 279 57 140 4.05e-18 83.6
Msa1040560 MtrunA17_Chr5g0443131 48.649 74 37 1 202 275 144 216 5.29e-18 84.3
Msa1040560 MtrunA17_Chr3g0129321 36.842 114 67 2 162 275 69 177 1.35e-17 81.3
Msa1040560 MtrunA17_Chr1g0147881 46.053 76 41 0 199 274 246 321 1.70e-17 83.6
Msa1040560 MtrunA17_Chr2g0284321 54.839 62 28 0 215 276 35 96 2.05e-17 80.9
Msa1040560 MtrunA17_Chr3g0129361 45.946 74 39 1 199 272 128 200 2.51e-17 80.9
Msa1040560 MtrunA17_Chr4g0053281 53.226 62 29 0 216 277 267 328 3.52e-17 82.4
Msa1040560 MtrunA17_Chr1g0184691 52.239 67 32 0 216 282 294 360 3.67e-17 82.8
Msa1040560 MtrunA17_Chr2g0293481 50.000 70 35 0 215 284 267 336 4.04e-17 83.6
Msa1040560 MtrunA17_Chr2g0319961 44.545 110 51 3 176 275 31 140 5.46e-17 80.5
Msa1040560 MtrunA17_Chr5g0401821 47.297 74 39 0 201 274 185 258 5.51e-17 80.9
Msa1040560 MtrunA17_Chr8g0348311 48.611 72 37 0 213 284 153 224 9.11e-17 81.3
Msa1040560 MtrunA17_Chr8g0335811 45.333 75 40 1 198 272 137 210 1.03e-16 79.0
Msa1040560 MtrunA17_Chr8g0383351 50.000 64 31 1 209 272 154 216 2.11e-16 78.2
Msa1040560 MtrunA17_Chr7g0228941 47.887 71 37 0 202 272 39 109 2.71e-16 75.1
Msa1040560 MtrunA17_Chr4g0071521 53.226 62 29 0 211 272 241 302 4.60e-16 79.0
Msa1040560 MtrunA17_Chr7g0248691 48.611 72 37 0 213 284 152 223 5.82e-16 78.6
Msa1040560 MtrunA17_Chr1g0188941 46.970 66 34 1 210 275 46 110 1.06e-15 73.2
Msa1040560 MtrunA17_Chr3g0126391 53.333 75 32 2 199 271 118 191 3.08e-15 76.6
Msa1040560 MtrunA17_Chr3g0139021 44.595 74 41 0 199 272 298 371 3.99e-15 77.0
Msa1040560 MtrunA17_Chr1g0202461 47.143 70 37 0 213 282 259 328 5.18e-15 76.3
Msa1040560 MtrunA17_Chr2g0289181 45.455 66 36 0 210 275 9 74 5.90e-15 73.9
Msa1040560 MtrunA17_Chr8g0387501 35.165 91 59 0 214 304 128 218 1.23e-14 73.9
Msa1040560 MtrunA17_Chr1g0189391 39.216 102 56 3 172 272 58 154 2.75e-14 73.6
Msa1040560 MtrunA17_Chr7g0238921 53.125 64 29 1 213 276 122 184 9.01e-14 72.0
Msa1040560 MtrunA17_Chr8g0347251 39.000 100 58 2 175 271 95 194 1.96e-13 71.2
Msa1040560 MtrunA17_Chr8g0387981 50.000 74 34 2 200 271 118 190 2.61e-13 70.9
Msa1040560 MtrunA17_Chr7g0244971 37.500 104 62 2 198 298 105 208 5.83e-13 69.3
Msa1040560 MtrunA17_Chr7g0244981 40.000 105 58 3 198 298 104 207 5.92e-13 68.9
Msa1040560 MtrunA17_Chr5g0447711 37.662 77 46 2 205 281 220 294 3.10e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1040560 AT4G01720.1 42.270 511 203 13 1 441 1 489 2.80e-91 285
Msa1040560 AT1G62300.1 38.025 476 192 13 32 418 89 550 7.13e-75 244
Msa1040560 AT4G04450.2 55.556 243 88 5 185 408 168 409 6.34e-70 228
Msa1040560 AT4G04450.1 55.556 243 88 5 185 408 262 503 2.11e-69 229
Msa1040560 AT4G22070.4 63.006 173 60 2 198 366 280 452 8.18e-52 183
Msa1040560 AT4G22070.3 63.006 173 60 2 198 366 280 452 8.18e-52 183
Msa1040560 AT4G22070.2 63.006 173 60 2 198 366 280 452 8.18e-52 183
Msa1040560 AT4G22070.1 63.006 173 60 2 198 366 280 452 8.18e-52 183
Msa1040560 AT1G68150.1 42.291 227 94 6 100 296 97 316 1.26e-46 165
Msa1040560 AT5G15130.2 37.771 323 131 8 140 410 119 423 7.73e-46 166
Msa1040560 AT5G15130.1 37.771 323 131 8 140 410 161 465 1.45e-45 166
Msa1040560 AT1G18860.1 55.556 153 59 2 193 338 219 369 4.50e-39 148
Msa1040560 AT1G69810.2 50.625 160 70 5 179 336 111 263 2.92e-38 141
Msa1040560 AT1G69810.1 50.943 159 69 5 181 337 171 322 3.60e-38 142
Msa1040560 AT1G80840.1 29.023 348 181 11 71 411 9 297 1.93e-28 114
Msa1040560 AT4G31800.1 35.398 226 121 7 86 293 36 254 1.09e-27 112
Msa1040560 AT2G25000.1 32.353 204 123 3 77 280 23 211 2.89e-25 104
Msa1040560 AT2G25000.3 33.333 183 108 2 98 280 22 190 9.38e-25 102
Msa1040560 AT2G25000.2 33.516 182 107 2 99 280 1 168 1.21e-24 102
Msa1040560 AT2G25000.4 33.516 182 107 2 99 280 1 168 1.21e-24 102
Msa1040560 AT4G26640.5 41.739 115 61 2 176 285 161 274 5.40e-23 100
Msa1040560 AT4G26640.5 37.736 106 63 3 206 311 26 128 3.65e-12 68.2
Msa1040560 AT4G26640.6 41.739 115 61 2 176 285 161 274 5.40e-23 100
Msa1040560 AT4G26640.6 37.736 106 63 3 206 311 26 128 3.65e-12 68.2
Msa1040560 AT4G26640.4 41.739 115 61 2 176 285 161 274 5.40e-23 100
Msa1040560 AT4G26640.4 37.736 106 63 3 206 311 26 128 3.65e-12 68.2
Msa1040560 AT4G26640.3 41.739 115 61 2 176 285 161 274 5.40e-23 100
Msa1040560 AT4G26640.3 37.736 106 63 3 206 311 26 128 3.65e-12 68.2
Msa1040560 AT4G31800.2 46.535 101 49 2 198 293 89 189 5.51e-23 97.8
Msa1040560 AT4G26640.1 41.739 115 61 2 176 285 265 378 1.29e-22 100
Msa1040560 AT4G26640.1 37.736 106 63 3 206 311 130 232 5.63e-12 67.8
Msa1040560 AT4G26640.7 44.762 105 52 2 176 275 297 400 1.47e-22 100
Msa1040560 AT4G26640.7 37.736 106 63 3 206 311 162 264 6.78e-12 67.8
Msa1040560 AT5G49520.1 51.948 77 36 1 199 275 205 280 1.59e-22 99.4
Msa1040560 AT4G26640.2 44.762 105 52 2 176 275 337 440 1.71e-22 100
Msa1040560 AT4G26640.2 37.736 106 63 3 206 311 202 304 7.75e-12 67.8
Msa1040560 AT4G18170.1 43.478 115 49 3 176 275 118 231 3.53e-22 97.1
Msa1040560 AT2G38470.1 49.367 79 39 1 199 277 346 423 4.57e-22 99.0
Msa1040560 AT2G38470.1 50.000 60 28 2 216 275 185 242 1.72e-12 69.7
Msa1040560 AT1G29860.1 40.517 116 56 3 199 314 120 222 8.21e-22 95.5
Msa1040560 AT5G26170.1 50.000 72 35 1 201 272 99 169 1.08e-21 92.0
Msa1040560 AT2G46130.1 46.237 93 39 2 181 273 6 87 1.53e-21 89.7
Msa1040560 AT1G13960.2 55.405 74 32 1 202 275 243 315 2.62e-21 95.1
Msa1040560 AT1G13960.2 43.820 89 42 4 205 288 61 146 4.09e-13 70.9
Msa1040560 AT1G13960.1 55.405 74 32 1 202 275 396 468 3.36e-21 96.3
Msa1040560 AT1G13960.1 43.820 89 42 4 205 288 214 299 3.58e-13 71.6
Msa1040560 AT2G04880.2 44.706 85 46 1 201 285 269 352 3.85e-21 95.9
Msa1040560 AT2G04880.2 39.175 97 51 3 213 303 109 203 3.56e-13 71.6
Msa1040560 AT2G04880.1 44.706 85 46 1 201 285 293 376 4.85e-21 95.9
Msa1040560 AT2G04880.1 45.070 71 37 2 213 283 109 177 1.41e-12 69.7
Msa1040560 AT2G03340.1 51.899 79 37 1 202 280 402 479 7.22e-21 95.5
Msa1040560 AT2G03340.1 50.000 60 28 2 216 275 251 308 2.41e-12 69.3
Msa1040560 AT5G07100.2 39.823 113 57 2 163 275 99 200 7.78e-21 90.9
Msa1040560 AT5G07100.4 39.823 113 57 2 163 275 99 200 7.78e-21 90.9
Msa1040560 AT5G07100.5 39.823 113 57 2 163 275 99 200 7.78e-21 90.9
Msa1040560 AT5G07100.3 39.823 113 57 2 163 275 99 200 7.78e-21 90.9
Msa1040560 AT5G56270.1 50.000 80 39 1 198 277 470 548 8.96e-21 95.5
Msa1040560 AT5G56270.1 49.180 61 29 2 216 276 274 332 4.11e-11 65.5
Msa1040560 AT5G07100.1 50.649 77 37 1 199 275 218 293 1.59e-20 92.0
Msa1040560 AT5G41570.1 52.000 75 35 1 199 273 82 155 2.84e-20 88.2
Msa1040560 AT2G30250.1 50.633 79 38 1 199 277 312 389 3.77e-20 92.4
Msa1040560 AT1G64000.1 52.778 72 33 1 202 273 101 171 4.04e-20 88.6
Msa1040560 AT5G13080.1 52.055 73 34 1 202 274 54 125 4.39e-20 86.7
Msa1040560 AT2G47260.1 45.918 98 48 2 199 292 158 254 8.15e-20 90.5
Msa1040560 AT5G46350.1 50.000 74 36 1 202 275 170 242 8.75e-20 90.5
Msa1040560 AT4G26440.1 49.367 79 39 1 199 277 356 433 2.90e-19 90.9
Msa1040560 AT4G26440.1 47.541 61 30 2 216 276 179 237 2.13e-11 66.2
Msa1040560 AT3G01080.1 50.000 74 36 1 202 275 293 365 3.75e-19 89.7
Msa1040560 AT3G01080.1 40.659 91 49 3 216 303 168 256 2.97e-12 68.6
Msa1040560 AT4G30935.1 49.367 79 39 1 197 275 313 390 3.77e-19 90.1
Msa1040560 AT3G01080.2 50.000 74 36 1 202 275 331 403 4.50e-19 89.7
Msa1040560 AT3G01080.2 40.659 91 49 3 216 303 206 294 3.20e-12 68.6
Msa1040560 AT3G01970.1 52.778 72 33 1 201 272 51 121 5.84e-19 83.6
Msa1040560 AT1G55600.1 46.835 79 41 1 199 277 291 368 6.18e-19 89.4
Msa1040560 AT3G62340.1 51.948 77 36 1 199 275 102 177 1.29e-18 85.9
Msa1040560 AT1G29280.1 47.500 80 41 1 196 275 56 134 2.88e-18 84.7
Msa1040560 AT2G23320.1 46.429 84 37 1 199 274 216 299 3.16e-18 85.5
Msa1040560 AT1G69310.4 40.777 103 52 2 178 272 102 203 3.76e-18 84.7
Msa1040560 AT1G69310.2 40.777 103 52 2 178 272 102 203 3.76e-18 84.7
Msa1040560 AT1G69310.1 40.777 103 52 2 178 272 102 203 3.76e-18 84.7
Msa1040560 AT2G30590.1 45.977 87 39 1 199 277 289 375 5.63e-18 85.9
Msa1040560 AT5G64810.1 46.479 71 37 1 202 272 97 166 7.30e-18 82.0
Msa1040560 AT5G28650.1 45.122 82 37 1 199 272 238 319 1.08e-17 84.3
Msa1040560 AT3G58710.1 49.383 81 38 1 206 286 62 139 2.85e-17 82.0
Msa1040560 AT3G58710.2 49.383 81 38 1 206 286 61 138 2.86e-17 82.0
Msa1040560 AT4G31800.3 34.595 185 96 7 86 252 36 213 3.68e-17 80.9
Msa1040560 AT3G04670.1 43.902 82 38 1 199 272 238 319 4.69e-17 82.4
Msa1040560 AT2G34830.1 45.783 83 44 1 201 282 200 282 4.81e-17 83.2
Msa1040560 AT2G34830.2 45.783 83 44 1 201 282 209 291 5.22e-17 83.2
Msa1040560 AT4G23550.1 32.143 140 84 2 148 287 84 212 5.28e-17 82.0
Msa1040560 AT4G39410.1 45.946 74 39 1 199 272 207 279 5.34e-17 81.6
Msa1040560 AT1G30650.1 45.783 83 44 1 201 282 202 284 6.13e-17 83.2
Msa1040560 AT4G24240.1 49.315 73 37 0 202 274 268 340 7.02e-17 82.0
Msa1040560 AT5G52830.1 51.389 72 35 0 213 284 163 234 8.94e-17 81.6
Msa1040560 AT2G44745.1 43.023 86 38 2 187 272 127 201 1.36e-16 79.0
Msa1040560 AT2G46130.2 43.011 93 38 3 181 273 6 83 1.55e-16 75.5
Msa1040560 AT2G24570.1 56.140 57 25 0 216 272 244 300 3.72e-16 79.7
Msa1040560 AT4G01250.1 47.222 72 38 0 213 284 126 197 8.25e-16 78.2
Msa1040560 AT2G37260.2 48.000 75 35 2 210 281 262 335 9.41e-16 78.6
Msa1040560 AT2G37260.2 40.860 93 44 4 193 280 65 151 5.84e-13 70.1
Msa1040560 AT4G31550.2 54.386 57 26 0 216 272 246 302 9.65e-16 78.6
Msa1040560 AT4G31550.1 54.386 57 26 0 216 272 247 303 9.66e-16 78.6
Msa1040560 AT2G37260.3 48.000 75 35 2 210 281 264 337 9.84e-16 78.6
Msa1040560 AT2G37260.3 40.860 93 44 4 193 280 67 153 5.92e-13 70.1
Msa1040560 AT2G37260.1 48.000 75 35 2 210 281 344 417 1.74e-15 78.6
Msa1040560 AT2G37260.1 40.860 93 44 4 193 280 147 233 9.30e-13 70.1
Msa1040560 AT5G45050.1 40.000 95 55 1 215 307 1180 1274 8.69e-15 77.4
Msa1040560 AT5G45050.4 40.000 95 55 1 215 307 1041 1135 9.73e-15 77.4
Msa1040560 AT5G45050.2 40.000 95 55 1 215 307 1152 1246 9.78e-15 77.4
Msa1040560 AT1G69310.3 37.864 103 51 3 178 272 102 199 3.41e-13 70.1
Msa1040560 AT2G21900.1 33.019 106 64 2 210 315 104 202 8.68e-13 67.4
Msa1040560 AT2G46400.1 44.000 75 40 1 199 271 88 162 1.33e-12 68.6
Msa1040560 AT5G45260.1 40.860 93 49 2 200 290 1197 1285 1.53e-12 70.5
Msa1040560 AT3G01080.3 40.659 91 49 3 216 303 206 294 2.11e-12 68.6
Msa1040560 AT5G43290.1 37.255 102 56 4 174 272 74 170 3.06e-12 67.4
Msa1040560 AT2G40740.1 46.667 75 35 2 216 285 174 248 3.49e-12 67.4
Msa1040560 AT2G40740.3 46.667 75 35 2 216 285 183 257 5.05e-12 67.0
Msa1040560 AT3G56400.1 35.922 103 63 2 172 271 76 178 5.70e-12 66.6
Msa1040560 AT1G66560.1 45.588 68 35 1 206 271 94 161 7.53e-11 62.8

Find 111 sgRNAs with CRISPR-Local

Find 392 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTAAAACGTTACGTTAAC+AGG 0.198700 7_1:-77940284 None:intergenic
GCCAAAGCTGTAGTAAAATT+TGG 0.236789 7_1:-77945579 None:intergenic
CATATATATAGTTATCTAAT+TGG 0.308263 7_1:-77945718 None:intergenic
GAATAATAATGCATTGGTTT+CGG 0.324127 7_1:+77943122 Msa1040560:CDS
GGATGTCAGTGGAGGAAATA+TGG 0.326047 7_1:+77943551 Msa1040560:CDS
ATGCAACATCCGCAACTACT+AGG 0.336174 7_1:+77945450 Msa1040560:CDS
TTGTAGTTGGCTATAGCTTT+TGG 0.341519 7_1:-77940665 None:intergenic
TTAATTACCTGTTTGCGAAC+TGG 0.370062 7_1:-77943641 None:intergenic
GAGGAACTCTGGAGAGGTTA+TGG 0.374985 7_1:-77945413 None:intergenic
GCAACCACCACCTTCATCTA+TGG 0.378686 7_1:+77945524 Msa1040560:CDS
GCAGTTGCAGCTGGTGGGAG+TGG 0.382339 7_1:-77945216 None:intergenic
TTGCGTGGGTTCTTCTAACT+TGG 0.393374 7_1:-77943199 None:intergenic
GGAAGGGTTGAGAAGCTGAT+AGG 0.399322 7_1:-77945362 None:intergenic
GAATCTTCTGCAGGATGATC+AGG 0.403070 7_1:-77943165 None:intergenic
GCAGCAATTTCATCAATCAT+TGG 0.423822 7_1:+77945603 Msa1040560:CDS
TAATTACCTGTTTGCGAACT+GGG 0.426338 7_1:-77943640 None:intergenic
AGATCCTCCGATCAAAGAAA+TGG 0.429845 7_1:+77940154 Msa1040560:CDS
AAAATTTGGATCCGAAGAAA+TGG 0.435237 7_1:-77945565 None:intergenic
TGTTAGTGCAGCCATTTCTT+CGG 0.448790 7_1:+77945554 Msa1040560:CDS
GATGGTAATAATAATCTTGC+AGG 0.450084 7_1:+77945642 Msa1040560:CDS
CAGAATATGGAAGAAAATCA+TGG 0.453636 7_1:+77943075 Msa1040560:intron
TTTGCTATGGCAGTTGCAGC+TGG 0.458465 7_1:-77945225 None:intergenic
TTATCCTTCTTAAGCTCCTC+CGG 0.460563 7_1:+77940107 Msa1040560:CDS
CGATAGTAGGCACGAGGACA+AGG 0.465488 7_1:-77943596 None:intergenic
AGCTTCTGATCTTGCACGTA+TGG 0.466004 7_1:-77943253 None:intergenic
TGCCTACTATCGTTGCACTA+TGG 0.467155 7_1:+77943607 Msa1040560:CDS
AAAATTGAATAATAATGCAT+TGG 0.472330 7_1:+77943116 Msa1040560:CDS
AAGAAATCCATTTCTTTGAT+CGG 0.475782 7_1:-77940161 None:intergenic
CAGTTGCAGCTGGTGGGAGT+GGG 0.476377 7_1:-77945215 None:intergenic
AGGATGCCCAGTTCGCAAAC+AGG 0.487149 7_1:+77943634 Msa1040560:CDS
ATTCACAGTGGTGGTGGTGG+TGG 0.490550 7_1:-77940085 None:intergenic
TGCTGATATTGTGTTTGCTA+TGG 0.490920 7_1:-77945238 None:intergenic
CTTGCAGGTGTAGTTCCTGC+AGG 0.491341 7_1:+77945657 Msa1040560:CDS
CTGGTGGGAGTGGGTGAGTG+TGG 0.492649 7_1:-77945206 None:intergenic
AACCTCATCAACACTTAGAA+AGG 0.495655 7_1:+77945287 Msa1040560:CDS
GTACTTGACATTGTTGCATA+GGG 0.502525 7_1:-77945339 None:intergenic
AAATGGTAGAGGAGGAACTC+TGG 0.503668 7_1:-77945424 None:intergenic
GGTACTTGACATTGTTGCAT+AGG 0.510259 7_1:-77945340 None:intergenic
GAGAATATAGTGCATGATTG+TGG 0.511848 7_1:-77945693 None:intergenic
AGGATAATTCACAGTGGTGG+TGG 0.512011 7_1:-77940091 None:intergenic
GTCGAGGGTGATTGTTGGGA+AGG 0.512231 7_1:-77945379 None:intergenic
AATAATGCATTGGTTTCGGA+TGG 0.512362 7_1:+77943126 Msa1040560:CDS
ATTGGTTTCGGATGGAAAGC+AGG 0.513871 7_1:+77943134 Msa1040560:CDS
TGCGGATGTTGCATTTGAAA+TGG 0.519053 7_1:-77945441 None:intergenic
ATACACACCTGACCATGGTC+TGG 0.520004 7_1:-77940721 None:intergenic
AAATGAATTAGATAAATATC+CGG 0.520203 7_1:-77945316 None:intergenic
TGCAAGATCAGAAGCTCCCC+TGG 0.525707 7_1:+77943260 Msa1040560:CDS
GCTATGGCAGTTGCAGCTGG+TGG 0.526091 7_1:-77945222 None:intergenic
TCAAGTCGAGGGTGATTGTT+GGG 0.528867 7_1:-77945383 None:intergenic
TACCACCATTACTTCAACTA+GGG 0.533321 7_1:+77945502 Msa1040560:CDS
TGCAACATCCGCAACTACTA+GGG 0.535104 7_1:+77945451 Msa1040560:CDS
CTACCACCATTACTTCAACT+AGG 0.538586 7_1:+77945501 Msa1040560:CDS
CATGGCAGCATCATCAAAGA+AGG 0.547257 7_1:+77940230 Msa1040560:CDS
GAAGGGTTGAGAAGCTGATA+GGG 0.548942 7_1:-77945361 None:intergenic
GTTGTTGTGGAGGAAGTCGC+CGG 0.550845 7_1:-77940126 None:intergenic
TTCTAACTTGGATGAGTGTG+AGG 0.554307 7_1:-77943187 None:intergenic
CTATGGCAGTTGCAGCTGGT+GGG 0.556898 7_1:-77945221 None:intergenic
GATCTATACTGTTGTTGTGG+AGG 0.557992 7_1:-77940136 None:intergenic
TGTTGCATTTGAAATGGTAG+AGG 0.559296 7_1:-77945435 None:intergenic
TTCCTTTCTAAGTGTTGATG+AGG 0.560288 7_1:-77945289 None:intergenic
AGCCATAGTGCAACGATAGT+AGG 0.563933 7_1:-77943609 None:intergenic
TGAACAACTGAGCTTGTAGT+TGG 0.569201 7_1:-77940678 None:intergenic
ACACTTAGAAAGGAATCAGC+CGG 0.572173 7_1:+77945297 Msa1040560:CDS
AAATCCATTTCTTTGATCGG+AGG 0.572624 7_1:-77940158 None:intergenic
TGCATTTGAAATGGTAGAGG+AGG 0.573974 7_1:-77945432 None:intergenic
AGAATATGGAAGAAAATCAT+GGG 0.574335 7_1:+77943076 Msa1040560:intron
ACACTCTCAACCATAGATGA+AGG 0.575020 7_1:-77945534 None:intergenic
GTCAAGTCGAGGGTGATTGT+TGG 0.575416 7_1:-77945384 None:intergenic
GGATTAATCCCTAGTAGTTG+CGG 0.578031 7_1:-77945459 None:intergenic
ACGAGGACAAGGGTTACCCT+TGG 0.579166 7_1:-77943585 None:intergenic
ATAATTCACAGTGGTGGTGG+TGG 0.579236 7_1:-77940088 None:intergenic
GAGGATCTATACTGTTGTTG+TGG 0.580320 7_1:-77940139 None:intergenic
TCGAGGGTGATTGTTGGGAA+GGG 0.581698 7_1:-77945378 None:intergenic
GTCGCCGGAGGAGCTTAAGA+AGG 0.581732 7_1:-77940111 None:intergenic
GAAAGGAATTAGGTCTTGCG+TGG 0.585330 7_1:-77943214 None:intergenic
GAGTGTGAGGAATCTTCTGC+AGG 0.593547 7_1:-77943174 None:intergenic
GGAGCACAAAGAGGTGGTGA+TGG 0.595155 7_1:+77945624 Msa1040560:CDS
TATCGTTGCACTATGGCTGT+AGG 0.598056 7_1:+77943614 Msa1040560:CDS
GGTTGCCCTAGTTGAAGTAA+TGG 0.602040 7_1:-77945507 None:intergenic
TATGGCTATGTGTCAAGTCG+AGG 0.602332 7_1:-77945395 None:intergenic
AGCTTCTGTGAGAAGAACAA+TGG 0.606352 7_1:-77945480 None:intergenic
TATGGAAGAAAATCATGGGA+TGG 0.610182 7_1:+77943080 Msa1040560:CDS
TCTTCTGCAGGATGATCAGG+AGG 0.623422 7_1:-77943162 None:intergenic
ATCATTGGAGCACAAAGAGG+TGG 0.623691 7_1:+77945618 Msa1040560:CDS
AAAGGAATTAGGTCTTGCGT+GGG 0.624304 7_1:-77943213 None:intergenic
GGAAGCTGAGGTGAACCTGC+AGG 0.624454 7_1:-77945672 None:intergenic
ATGGCTATGTGTCAAGTCGA+GGG 0.630395 7_1:-77945394 None:intergenic
TGCTGAGTGAGGAGTAGTGT+TGG 0.633875 7_1:-77940257 None:intergenic
TCAATCATTGGAGCACAAAG+AGG 0.634714 7_1:+77945615 Msa1040560:CDS
TCTTGCACGTATGGAAACCC+TGG 0.642973 7_1:-77943244 None:intergenic
TAACAGGATCATGCTGAGTG+AGG 0.647028 7_1:-77940268 None:intergenic
TGCTTGAAAGTGAATTGAGG+AGG 0.651482 7_1:+77940596 Msa1040560:CDS
AGAAGGATAATTCACAGTGG+TGG 0.654696 7_1:-77940094 None:intergenic
CAAACATACACACCTGACCA+TGG 0.657184 7_1:-77940726 None:intergenic
TCAACCATAGATGAAGGTGG+TGG 0.660007 7_1:-77945528 None:intergenic
TGCCCTAGTTGAAGTAATGG+TGG 0.667028 7_1:-77945504 None:intergenic
AGATCAGCGATGGATGTCAG+TGG 0.669830 7_1:+77943540 Msa1040560:intron
ATACTAACAACAACATACGA+AGG 0.672464 7_1:+77945180 Msa1040560:CDS
GATAGTAGGCACGAGGACAA+GGG 0.677877 7_1:-77943595 None:intergenic
GTTGTGGAGGAAGTCGCCGG+AGG 0.678902 7_1:-77940123 None:intergenic
TCAGCGATGGATGTCAGTGG+AGG 0.680116 7_1:+77943543 Msa1040560:CDS
GTAGAGGAGGAACTCTGGAG+AGG 0.684882 7_1:-77945419 None:intergenic
GTATGCTTGAAAGTGAATTG+AGG 0.687225 7_1:+77940593 Msa1040560:CDS
CTCTCAACCATAGATGAAGG+TGG 0.688697 7_1:-77945531 None:intergenic
GTGCATGATTGTGGAAGCTG+AGG 0.689719 7_1:-77945684 None:intergenic
GCTTGAAAGTGAATTGAGGA+GGG 0.713652 7_1:+77940597 Msa1040560:CDS
AATGATTGATGAAATTGCTG+CGG 0.726068 7_1:-77945601 None:intergenic
GAAGATGATCAAGATCAACA+TGG 0.728705 7_1:+77940212 Msa1040560:CDS
GTGCAACGATAGTAGGCACG+AGG 0.731065 7_1:-77943602 None:intergenic
CTTCTGCAGGATGATCAGGA+GGG 0.753951 7_1:-77943161 None:intergenic
TTAAGAAGGATAATTCACAG+TGG 0.816305 7_1:-77940097 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTAAGAAAGTTAAATTT+TGG - chr7_1:77940501-77940520 None:intergenic 10.0%
!! TGAAAAATAATTAATTGAAA+TGG - chr7_1:77941089-77941108 None:intergenic 10.0%
!!! TCAAATATATATTTTTTTGT+TGG + chr7_1:77941106-77941125 Msa1040560:intron 10.0%
!!! CAAATATATATTTTTTTGTT+GGG + chr7_1:77941107-77941126 Msa1040560:intron 10.0%
!!! TATAAAAGAAAATATTTTCT+TGG + chr7_1:77941169-77941188 Msa1040560:intron 10.0%
!! ACTATCTTTAATAAAATATT+GGG - chr7_1:77941310-77941329 None:intergenic 10.0%
!! TACTATCTTTAATAAAATAT+TGG - chr7_1:77941311-77941330 None:intergenic 10.0%
!!! TATTATTTTAAACAGATTAT+AGG - chr7_1:77941381-77941400 None:intergenic 10.0%
!!! ACTTTTATTTAAAAAATTGA+CGG - chr7_1:77941496-77941515 None:intergenic 10.0%
!!! ACAATAGATAAAATATTTTA+GGG - chr7_1:77942032-77942051 None:intergenic 10.0%
!!! TACAATAGATAAAATATTTT+AGG - chr7_1:77942033-77942052 None:intergenic 10.0%
!!! AAAAACTGAATTTTTTTTTA+AGG - chr7_1:77942748-77942767 None:intergenic 10.0%
!!! AATTAAAACTGAAAAATTTT+CGG - chr7_1:77942798-77942817 None:intergenic 10.0%
!! GTTATATTTATATATATACT+TGG + chr7_1:77943364-77943383 Msa1040560:intron 10.0%
!!! AATTTTATTGAAAAATATGA+AGG - chr7_1:77944413-77944432 None:intergenic 10.0%
!!! AATATGAATTTTTATGTTTT+TGG + chr7_1:77944506-77944525 Msa1040560:intron 10.0%
!!! TAATAAAATTTTCTAGAAAT+GGG - chr7_1:77944749-77944768 None:intergenic 10.0%
!!! TTAATAAAATTTTCTAGAAA+TGG - chr7_1:77944750-77944769 None:intergenic 10.0%
!!! AATTAAGATAATATCTTTTA+GGG - chr7_1:77944892-77944911 None:intergenic 10.0%
!!! TTTGAAGAACATATATATTT+TGG + chr7_1:77940525-77940544 Msa1040560:intron 15.0%
!! GAAAATTAATAATCAAATGT+TGG - chr7_1:77940768-77940787 None:intergenic 15.0%
!!! CTTTTATTTAAAAAATTGAC+GGG - chr7_1:77941495-77941514 None:intergenic 15.0%
!!! TAATTAAAGATCATATTTTC+AGG + chr7_1:77941550-77941569 Msa1040560:intron 15.0%
!!! TAAAAAACATGTTCTTTTTA+TGG + chr7_1:77942188-77942207 Msa1040560:intron 15.0%
!!! TAATTAGTGTAATTTAAAGT+AGG + chr7_1:77942394-77942413 Msa1040560:intron 15.0%
!! AAAAAATCGCAAAAAAAATT+CGG - chr7_1:77942773-77942792 None:intergenic 15.0%
!!! ATTAAAACTGAAAAATTTTC+GGG - chr7_1:77942797-77942816 None:intergenic 15.0%
!! ATATTTATAGTTATGAACAA+AGG + chr7_1:77943038-77943057 Msa1040560:intron 15.0%
!! AAAATTGAATAATAATGCAT+TGG + chr7_1:77943116-77943135 Msa1040560:CDS 15.0%
!! ATATAAATATAACTGTACAA+TGG - chr7_1:77943357-77943376 None:intergenic 15.0%
!!! TATATTTTACTAAAATTCAG+AGG - chr7_1:77943746-77943765 None:intergenic 15.0%
!!! ATTTTACCATAAATGATATT+GGG + chr7_1:77943773-77943792 Msa1040560:intron 15.0%
!!! GGATATACATATTTTATATA+GGG - chr7_1:77943841-77943860 None:intergenic 15.0%
!!! TAATTTTAAGAGATTATTTG+TGG + chr7_1:77943869-77943888 Msa1040560:intron 15.0%
!!! TTTTTTTTTTTTTTGCTGTT+TGG + chr7_1:77943991-77944010 Msa1040560:intron 15.0%
!! TATTACTCTTTATAAAAGAT+AGG + chr7_1:77944252-77944271 Msa1040560:intron 15.0%
!! ATTACTCTTTATAAAAGATA+GGG + chr7_1:77944253-77944272 Msa1040560:intron 15.0%
!!! GAATTAAGATAATATCTTTT+AGG - chr7_1:77944893-77944912 None:intergenic 15.0%
!! AAATGAATTAGATAAATATC+CGG - chr7_1:77945319-77945338 None:intergenic 15.0%
!!! TCTTCTTTGTTGTTTTTATT+AGG - chr7_1:77940197-77940216 None:intergenic 20.0%
!! ACAAATCATTATTTCGTTAT+AGG - chr7_1:77940840-77940859 None:intergenic 20.0%
!!! AATAATGATTTGTTTGTTTC+TGG + chr7_1:77940847-77940866 Msa1040560:intron 20.0%
!! ATCTATTCATTTCATTTCTT+TGG + chr7_1:77940997-77941016 Msa1040560:intron 20.0%
!!! TATTTTAAACAGATTATAGG+CGG - chr7_1:77941378-77941397 None:intergenic 20.0%
!!! TCTGTTTAAAATAATACAGT+CGG + chr7_1:77941385-77941404 Msa1040560:intron 20.0%
!! ATAAAGCAACTAGATATATA+AGG + chr7_1:77941409-77941428 Msa1040560:intron 20.0%
!!! TACTCGTTACTTATATATTT+TGG - chr7_1:77941579-77941598 None:intergenic 20.0%
!!! TTCTTATTTAGTTGTTTTGT+TGG - chr7_1:77941664-77941683 None:intergenic 20.0%
!! AAAATTAGTGAAATGTTAAC+CGG + chr7_1:77941855-77941874 Msa1040560:intron 20.0%
!!! CATGATAAATTACCTTTTAA+AGG - chr7_1:77941903-77941922 None:intergenic 20.0%
!! ACTGGTTAAACATATTAAAA+AGG + chr7_1:77942114-77942133 Msa1040560:intron 20.0%
!!! ATGGTAATAATTTCCTTTTT+TGG + chr7_1:77942207-77942226 Msa1040560:intron 20.0%
!! ATAAAATGGAAATACTAGAA+GGG - chr7_1:77942270-77942289 None:intergenic 20.0%
!! AATAAAATGGAAATACTAGA+AGG - chr7_1:77942271-77942290 None:intergenic 20.0%
!! AAAAATCGCAAAAAAAATTC+GGG - chr7_1:77942772-77942791 None:intergenic 20.0%
!!! TTAAAACTGAAAAATTTTCG+GGG - chr7_1:77942796-77942815 None:intergenic 20.0%
!! TCAATTAATATATAGTACCA+GGG - chr7_1:77943280-77943299 None:intergenic 20.0%
!! ATCAATTAATATATAGTACC+AGG - chr7_1:77943281-77943300 None:intergenic 20.0%
!!! ATTTATATATATACTTGGTG+AGG + chr7_1:77943369-77943388 Msa1040560:intron 20.0%
!! CAATATCATTTATGGTAAAA+TGG - chr7_1:77943774-77943793 None:intergenic 20.0%
!!! CATTTTACCATAAATGATAT+TGG + chr7_1:77943772-77943791 Msa1040560:intron 20.0%
!!! GGGATATACATATTTTATAT+AGG - chr7_1:77943842-77943861 None:intergenic 20.0%
!! AAAATATGTATATCCCAATT+TGG + chr7_1:77943846-77943865 Msa1040560:intron 20.0%
!! TCTCTTAAAATTACCAAATT+GGG - chr7_1:77943862-77943881 None:intergenic 20.0%
!! ATCTCTTAAAATTACCAAAT+TGG - chr7_1:77943863-77943882 None:intergenic 20.0%
!! GAAAATATGAAACACATTAT+AGG - chr7_1:77943908-77943927 None:intergenic 20.0%
!! ATCAAATGTTGGTATATTTA+GGG - chr7_1:77944298-77944317 None:intergenic 20.0%
!! AATCAAATGTTGGTATATTT+AGG - chr7_1:77944299-77944318 None:intergenic 20.0%
!!! CAATAAAATTTTCCAGAAAA+AGG + chr7_1:77944423-77944442 Msa1040560:intron 20.0%
!!! TTTAGGGTTAAATAAGTAAA+TGG - chr7_1:77944876-77944895 None:intergenic 20.0%
!!! TAATTCTTTTATGTGAAACT+TGG + chr7_1:77944907-77944926 Msa1040560:intron 20.0%
!! ATTTAGTTAAATTAGTGAGT+CGG - chr7_1:77944984-77945003 None:intergenic 20.0%
!!! TATATCTCATGATTTTATGT+GGG - chr7_1:77945037-77945056 None:intergenic 20.0%
!! TACTAGTGTATATGTATATT+AGG - chr7_1:77945108-77945127 None:intergenic 20.0%
! AAGAAATCCATTTCTTTGAT+CGG - chr7_1:77940164-77940183 None:intergenic 25.0%
!! ATTTAAAACGTTACGTTAAC+AGG - chr7_1:77940287-77940306 None:intergenic 25.0%
!!! TAATTTGTTTTCATACAGAC+TGG + chr7_1:77940388-77940407 Msa1040560:intron 25.0%
!!! TCTTAAAAATTCTGAAACTG+AGG + chr7_1:77940456-77940475 Msa1040560:CDS 25.0%
! GTCATCAATAAAGAAAACAA+GGG + chr7_1:77940911-77940930 Msa1040560:intron 25.0%
! TATTGTCATTCCTAGTTTAA+AGG - chr7_1:77941341-77941360 None:intergenic 25.0%
!! ATTTTAAACAGATTATAGGC+GGG - chr7_1:77941377-77941396 None:intergenic 25.0%
!! TGTCTCATTTTATAGTAGTT+CGG + chr7_1:77941447-77941466 Msa1040560:intron 25.0%
! TATTCTCCATATTCTAGTAT+GGG + chr7_1:77942067-77942086 Msa1040560:intron 25.0%
!!! AGGCGGTTTTTAATTTTAAA+AGG - chr7_1:77942320-77942339 None:intergenic 25.0%
!!! TATAGATCGTTTTGTTGAAA+AGG - chr7_1:77942363-77942382 None:intergenic 25.0%
! GCACATTTCATTTAATAGTT+AGG + chr7_1:77942526-77942545 Msa1040560:intron 25.0%
!! AATTTTAAACGACCTCTATT+TGG - chr7_1:77942574-77942593 None:intergenic 25.0%
! TTAACTGATTAAACTTTGCA+GGG - chr7_1:77942945-77942964 None:intergenic 25.0%
! TTTAACTGATTAAACTTTGC+AGG - chr7_1:77942944-77942963 None:intergenic 25.0%
!!! ATTTTGTTAATTTGATGACG+TGG - chr7_1:77942682-77942701 None:intergenic 25.0%
! ACGTCATCAAATTAACAAAA+TGG + chr7_1:77942681-77942700 Msa1040560:intron 25.0%
! ATCAAATTAACAAAATGGCA+TGG + chr7_1:77942686-77942705 Msa1040560:intron 25.0%
! TCAAATTAACAAAATGGCAT+GGG + chr7_1:77942687-77942706 Msa1040560:intron 25.0%
! AGGAAAAAAAAAAAAAGCCA+GGG - chr7_1:77942728-77942747 None:intergenic 25.0%
! AAGGAAAAAAAAAAAAAGCC+AGG - chr7_1:77942729-77942748 None:intergenic 25.0%
! CATCATCAAAATTACCATAA+TGG - chr7_1:77942892-77942911 None:intergenic 25.0%
!!! TTATGGTAATTTTGATGATG+TGG + chr7_1:77942892-77942911 Msa1040560:intron 25.0%
! TTTAACTGATTAAACTTTGC+AGG + chr7_1:77942944-77942963 Msa1040560:intron 25.0%
! TTAACTGATTAAACTTTGCA+GGG + chr7_1:77942945-77942964 Msa1040560:intron 25.0%
! ATGAACAAAGGTAATATTTG+TGG + chr7_1:77943050-77943069 Msa1040560:intron 25.0%
! AATATTTGTGGAACAGAATA+TGG + chr7_1:77943062-77943081 Msa1040560:intron 25.0%
! AGAATATGGAAGAAAATCAT+GGG + chr7_1:77943076-77943095 Msa1040560:intron 25.0%
!!! GAATAATAATGCATTGGTTT+CGG + chr7_1:77943122-77943141 Msa1040560:CDS 25.0%
! CAATTAATATATAGTACCAG+GGG - chr7_1:77943279-77943298 None:intergenic 25.0%
!! TTTTCTTCAAAAGACTGAAT+AGG + chr7_1:77943923-77943942 Msa1040560:intron 25.0%
! TTTCTTCAAAAGACTGAATA+GGG + chr7_1:77943924-77943943 Msa1040560:intron 25.0%
!!! TTTTTTTTGCTGTTTGGAAA+TGG + chr7_1:77943997-77944016 Msa1040560:intron 25.0%
! TTATTAATTGAGTTCTGCAA+TGG + chr7_1:77944020-77944039 Msa1040560:intron 25.0%
! GATAGGGTTAAATAAGTAAA+TGG + chr7_1:77944269-77944288 Msa1040560:intron 25.0%
! TCAAATGTTGGTATATTTAG+GGG - chr7_1:77944297-77944316 None:intergenic 25.0%
! GTAGAAATTAATTTCGTAGA+TGG - chr7_1:77944369-77944388 None:intergenic 25.0%
!! CATAATATTCTACCTTTTTC+TGG - chr7_1:77944438-77944457 None:intergenic 25.0%
! ACATGAATTGACTAAAAACT+AGG + chr7_1:77944786-77944805 Msa1040560:intron 25.0%
! CATGAATTGACTAAAAACTA+GGG + chr7_1:77944787-77944806 Msa1040560:intron 25.0%
!!! TCATGAATGGAAATTTTTAG+AGG + chr7_1:77944817-77944836 Msa1040560:intron 25.0%
!!! CATGAATGGAAATTTTTAGA+GGG + chr7_1:77944818-77944837 Msa1040560:intron 25.0%
!! ATTTTTATCTATTGAGCTTG+TGG + chr7_1:77944930-77944949 Msa1040560:intron 25.0%
!! TTTTTATCTATTGAGCTTGT+GGG + chr7_1:77944931-77944950 Msa1040560:intron 25.0%
!! GTATATCTCATGATTTTATG+TGG - chr7_1:77945038-77945057 None:intergenic 25.0%
! TATACATATATTGCAACACA+TGG + chr7_1:77945053-77945072 Msa1040560:intron 25.0%
TTAAGAAGGATAATTCACAG+TGG - chr7_1:77940100-77940119 None:intergenic 30.0%
CGTCATCAATAAAGAAAACA+AGG + chr7_1:77940910-77940929 Msa1040560:intron 30.0%
CAAGGTTTCTAATTTAAGTG+AGG - chr7_1:77940944-77940963 None:intergenic 30.0%
CTCACTTAAATTAGAAACCT+TGG + chr7_1:77940942-77940961 Msa1040560:intron 30.0%
! TTTTAAACAGATTATAGGCG+GGG - chr7_1:77941376-77941395 None:intergenic 30.0%
! GCTTATTCAAGATTTTGTTG+CGG - chr7_1:77941642-77941661 None:intergenic 30.0%
CTATTCTCCATATTCTAGTA+TGG + chr7_1:77942066-77942085 Msa1040560:intron 30.0%
ACATTTCCCATACTAGAATA+TGG - chr7_1:77942076-77942095 None:intergenic 30.0%
AAAAAAGATTAGCGATTGCA+GGG - chr7_1:77942601-77942620 None:intergenic 30.0%
AAAAAAAGATTAGCGATTGC+AGG - chr7_1:77942602-77942621 None:intergenic 30.0%
TAACTGATTAAACTTTGCAG+GGG - chr7_1:77942946-77942965 None:intergenic 30.0%
GGAAAAAAAAAAAAAGCCAG+GGG - chr7_1:77942727-77942746 None:intergenic 30.0%
TACTGAAAAAAAATTACCCC+AGG + chr7_1:77942844-77942863 Msa1040560:intron 30.0%
ACTGAAAAAAAATTACCCCA+GGG + chr7_1:77942845-77942864 Msa1040560:intron 30.0%
CAAAATTACCATAATGGCAT+GGG - chr7_1:77942886-77942905 None:intergenic 30.0%
TCAAAATTACCATAATGGCA+TGG - chr7_1:77942887-77942906 None:intergenic 30.0%
TAACTGATTAAACTTTGCAG+GGG + chr7_1:77942946-77942965 Msa1040560:intron 30.0%
CAGAATATGGAAGAAAATCA+TGG + chr7_1:77943075-77943094 Msa1040560:intron 30.0%
!!! TGGCTTTTTTGAAAGGAATT+AGG - chr7_1:77943227-77943246 None:intergenic 30.0%
TAATTCCTTTCAAAAAAGCC+AGG + chr7_1:77943226-77943245 Msa1040560:CDS 30.0%
AATTCCTTTCAAAAAAGCCA+GGG + chr7_1:77943227-77943246 Msa1040560:CDS 30.0%
!!! GTTTTTTGAAGAGCTAATTG+TGG + chr7_1:77943415-77943434 Msa1040560:intron 30.0%
GAGGAAATATGGACAAAAAA+TGG + chr7_1:77943562-77943581 Msa1040560:CDS 30.0%
TGTGGATATAAACAGTATGT+AGG + chr7_1:77944143-77944162 Msa1040560:intron 30.0%
CTTTACAAAACCATTTCGTA+AGG + chr7_1:77944219-77944238 Msa1040560:intron 30.0%
CAAATGTTGGTATATTTAGG+GGG - chr7_1:77944296-77944315 None:intergenic 30.0%
!! AGCCTAAGGAATATTTTAGA+GGG - chr7_1:77944327-77944346 None:intergenic 30.0%
!! AAGCCTAAGGAATATTTTAG+AGG - chr7_1:77944328-77944347 None:intergenic 30.0%
! TCGTAGATGGAAAATTTTAG+AGG - chr7_1:77944356-77944375 None:intergenic 30.0%
ATTGTCATAATTAACCCACT+TGG + chr7_1:77944591-77944610 Msa1040560:intron 30.0%
TTGTCATAATTAACCCACTT+GGG + chr7_1:77944592-77944611 Msa1040560:intron 30.0%
GAGGGACTAAAATAAAATGT+TGG + chr7_1:77944836-77944855 Msa1040560:intron 30.0%
ATACTAACAACAACATACGA+AGG + chr7_1:77945180-77945199 Msa1040560:CDS 30.0%
AAAATTTGGATCCGAAGAAA+TGG - chr7_1:77945568-77945587 None:intergenic 30.0%
! TCCAAATTTTACTACAGCTT+TGG + chr7_1:77945578-77945597 Msa1040560:CDS 30.0%
AATGATTGATGAAATTGCTG+CGG - chr7_1:77945604-77945623 None:intergenic 30.0%
GATGGTAATAATAATCTTGC+AGG + chr7_1:77945642-77945661 Msa1040560:CDS 30.0%
AAATCCATTTCTTTGATCGG+AGG - chr7_1:77940161-77940180 None:intergenic 35.0%
GAAGATGATCAAGATCAACA+TGG + chr7_1:77940212-77940231 Msa1040560:CDS 35.0%
GTATGCTTGAAAGTGAATTG+AGG + chr7_1:77940593-77940612 Msa1040560:CDS 35.0%
! TTGTAGTTGGCTATAGCTTT+TGG - chr7_1:77940668-77940687 None:intergenic 35.0%
AGTTTGAAAAAAGACAGCCA+AGG - chr7_1:77940962-77940981 None:intergenic 35.0%
ACGTTTCTTGACTATACTAG+TGG - chr7_1:77941029-77941048 None:intergenic 35.0%
GTAAGATCCACCTTTAAACT+AGG + chr7_1:77941328-77941347 Msa1040560:intron 35.0%
TGTCATTCCTAGTTTAAAGG+TGG - chr7_1:77941338-77941357 None:intergenic 35.0%
! TATAGTAGTTCGGTTCGAAT+CGG + chr7_1:77941457-77941476 Msa1040560:intron 35.0%
ATTTGACTCATAGAGTTGAG+AGG - chr7_1:77941799-77941818 None:intergenic 35.0%
CACTAGTTAACGCCTTTAAA+AGG + chr7_1:77941888-77941907 Msa1040560:intron 35.0%
CTAGTATGGGAAATGTTAAC+CGG + chr7_1:77942080-77942099 Msa1040560:intron 35.0%
CTGGTTAAGCATACCAAAAA+AGG - chr7_1:77942223-77942242 None:intergenic 35.0%
TTAAACGACCTCTATTTGGA+GGG - chr7_1:77942570-77942589 None:intergenic 35.0%
TTTAAACGACCTCTATTTGG+AGG - chr7_1:77942571-77942590 None:intergenic 35.0%
CTGAAAAAAAATTACCCCAG+GGG + chr7_1:77942846-77942865 Msa1040560:intron 35.0%
TTTGCAGGGGCAAAAAAAAA+AGG + chr7_1:77942959-77942978 Msa1040560:intron 35.0%
! AAAAAAGGATTAGCGATTGC+AGG + chr7_1:77942974-77942993 Msa1040560:intron 35.0%
! AAAAAGGATTAGCGATTGCA+GGG + chr7_1:77942975-77942994 Msa1040560:intron 35.0%
TATGGAAGAAAATCATGGGA+TGG + chr7_1:77943080-77943099 Msa1040560:CDS 35.0%
!! AATAATGCATTGGTTTCGGA+TGG + chr7_1:77943126-77943145 Msa1040560:CDS 35.0%
AATATGCACCAGAATAGCTT+AGG - chr7_1:77943395-77943414 None:intergenic 35.0%
!! TTTTGAAGAGCTAATTGTGG+TGG + chr7_1:77943418-77943437 Msa1040560:intron 35.0%
AATTTCCACATTCATGCATG+TGG - chr7_1:77943465-77943484 None:intergenic 35.0%
! TGATGATTTTAGATCAGCGA+TGG + chr7_1:77943530-77943549 Msa1040560:intron 35.0%
ATATGGACAAAAAATGGCCA+AGG + chr7_1:77943568-77943587 Msa1040560:CDS 35.0%
TATGGACAAAAAATGGCCAA+GGG + chr7_1:77943569-77943588 Msa1040560:CDS 35.0%
TAATTACCTGTTTGCGAACT+GGG - chr7_1:77943643-77943662 None:intergenic 35.0%
TTAATTACCTGTTTGCGAAC+TGG - chr7_1:77943644-77943663 None:intergenic 35.0%
GGTAGACCCAATATCATTTA+TGG - chr7_1:77943782-77943801 None:intergenic 35.0%
AATGATATTGGGTCTACCTT+TGG + chr7_1:77943784-77943803 Msa1040560:intron 35.0%
TCTCGTAAGAATTTGTCCAA+AGG - chr7_1:77943803-77943822 None:intergenic 35.0%
!! AACATCAGTGATGGATTTGA+GGG - chr7_1:77944119-77944138 None:intergenic 35.0%
GAGGGACTAAAATCAAATGT+TGG - chr7_1:77944309-77944328 None:intergenic 35.0%
!! GTCCCTCTAAAATATTCCTT+AGG + chr7_1:77944322-77944341 Msa1040560:intron 35.0%
TTTAGAGGATCAAAAGCCTA+AGG - chr7_1:77944341-77944360 None:intergenic 35.0%
CTAAATTAGCCCACCTAAAT+TGG - chr7_1:77944692-77944711 None:intergenic 35.0%
CTAGGGACTAATTTCATGAA+TGG + chr7_1:77944804-77944823 Msa1040560:intron 35.0%
! TGCTGATATTGTGTTTGCTA+TGG - chr7_1:77945241-77945260 None:intergenic 35.0%
AACCTCATCAACACTTAGAA+AGG + chr7_1:77945287-77945306 Msa1040560:CDS 35.0%
!! TTCCTTTCTAAGTGTTGATG+AGG - chr7_1:77945292-77945311 None:intergenic 35.0%
GTACTTGACATTGTTGCATA+GGG - chr7_1:77945342-77945361 None:intergenic 35.0%
! TGTTGCATTTGAAATGGTAG+AGG - chr7_1:77945438-77945457 None:intergenic 35.0%
TACCACCATTACTTCAACTA+GGG + chr7_1:77945502-77945521 Msa1040560:CDS 35.0%
GCCAAAGCTGTAGTAAAATT+TGG - chr7_1:77945582-77945601 None:intergenic 35.0%
GCAGCAATTTCATCAATCAT+TGG + chr7_1:77945603-77945622 Msa1040560:CDS 35.0%
GAGAATATAGTGCATGATTG+TGG - chr7_1:77945696-77945715 None:intergenic 35.0%
AGAAGGATAATTCACAGTGG+TGG - chr7_1:77940097-77940116 None:intergenic 40.0%
TTATCCTTCTTAAGCTCCTC+CGG + chr7_1:77940107-77940126 Msa1040560:CDS 40.0%
GATCTATACTGTTGTTGTGG+AGG - chr7_1:77940139-77940158 None:intergenic 40.0%
GAGGATCTATACTGTTGTTG+TGG - chr7_1:77940142-77940161 None:intergenic 40.0%
AGATCCTCCGATCAAAGAAA+TGG + chr7_1:77940154-77940173 Msa1040560:CDS 40.0%
TGCTTGAAAGTGAATTGAGG+AGG + chr7_1:77940596-77940615 Msa1040560:CDS 40.0%
GCTTGAAAGTGAATTGAGGA+GGG + chr7_1:77940597-77940616 Msa1040560:CDS 40.0%
TGAACAACTGAGCTTGTAGT+TGG - chr7_1:77940681-77940700 None:intergenic 40.0%
CAGAAACAAAAACCAGACCA+TGG + chr7_1:77940709-77940728 Msa1040560:CDS 40.0%
AATTCCTTAACCAGTGCACT+CGG - chr7_1:77941150-77941169 None:intergenic 40.0%
!! TAAAGGCGTTAACTAGTGTC+CGG - chr7_1:77941886-77941905 None:intergenic 40.0%
!! GAATTCTTAAAAGAGTGCCC+CGG + chr7_1:77941988-77942007 Msa1040560:intron 40.0%
!! AATTCTTAAAAGAGTGCCCC+GGG + chr7_1:77941989-77942008 Msa1040560:intron 40.0%
CATAATTTGAGCTGTGAAGG+CGG - chr7_1:77942337-77942356 None:intergenic 40.0%
TGCCATAATTTGAGCTGTGA+AGG - chr7_1:77942340-77942359 None:intergenic 40.0%
! TTGCTTTGTTGCATGAAGCA+CGG + chr7_1:77942496-77942515 Msa1040560:intron 40.0%
TTATTCGTCCCTCCAAATAG+AGG + chr7_1:77942559-77942578 Msa1040560:intron 40.0%
AATTGACGAAAATACCCCTG+GGG - chr7_1:77942710-77942729 None:intergenic 40.0%
GAATTGACGAAAATACCCCT+GGG - chr7_1:77942709-77942728 None:intergenic 40.0%
TGATGTGGCAGTCATTAACT+TGG + chr7_1:77942907-77942926 Msa1040560:intron 40.0%
! GCAGTCATTAACTTGGTCAA+GGG + chr7_1:77942914-77942933 Msa1040560:intron 40.0%
TTATTCGTCCCTGCAAATAG+GGG - chr7_1:77943017-77943036 None:intergenic 40.0%
GTTATTCGTCCCTGCAAATA+GGG - chr7_1:77943018-77943037 None:intergenic 40.0%
TGTTATTCGTCCCTGCAAAT+AGG - chr7_1:77943019-77943038 None:intergenic 40.0%
TTCTAACTTGGATGAGTGTG+AGG - chr7_1:77943190-77943209 None:intergenic 40.0%
AAAGGAATTAGGTCTTGCGT+GGG - chr7_1:77943216-77943235 None:intergenic 40.0%
!!! GAAACCCTGGCTTTTTTGAA+AGG - chr7_1:77943234-77943253 None:intergenic 40.0%
! TGGTGGATATATAGCTAGCT+AGG + chr7_1:77943435-77943454 Msa1040560:intron 40.0%
!! ACATCAGTGATGGATTTGAG+GGG - chr7_1:77944118-77944137 None:intergenic 40.0%
!! CAACATCAGTGATGGATTTG+AGG - chr7_1:77944120-77944139 None:intergenic 40.0%
CTCAAATCCATCACTGATGT+TGG + chr7_1:77944118-77944137 Msa1040560:intron 40.0%
TGACATCAGAGCCTATCAAT+CGG - chr7_1:77944169-77944188 None:intergenic 40.0%
AACCATTTCGTAAGGTAGTG+AGG + chr7_1:77944227-77944246 Msa1040560:intron 40.0%
TTCCTCACTACCTTACGAAA+TGG - chr7_1:77944232-77944251 None:intergenic 40.0%
CATAATTAACCCACTTGGGT+TGG + chr7_1:77944596-77944615 Msa1040560:intron 40.0%
ATTCTCTCCAGTGCCAATTT+AGG + chr7_1:77944676-77944695 Msa1040560:intron 40.0%
GTGCACTATGTTTCTTGAAC+AGG + chr7_1:77945131-77945150 Msa1040560:intron 40.0%
ACACTTAGAAAGGAATCAGC+CGG + chr7_1:77945297-77945316 Msa1040560:CDS 40.0%
GGTACTTGACATTGTTGCAT+AGG - chr7_1:77945343-77945362 None:intergenic 40.0%
! TGCATTTGAAATGGTAGAGG+AGG - chr7_1:77945435-77945454 None:intergenic 40.0%
TGCGGATGTTGCATTTGAAA+TGG - chr7_1:77945444-77945463 None:intergenic 40.0%
GGATTAATCCCTAGTAGTTG+CGG - chr7_1:77945462-77945481 None:intergenic 40.0%
AGCTTCTGTGAGAAGAACAA+TGG - chr7_1:77945483-77945502 None:intergenic 40.0%
CTACCACCATTACTTCAACT+AGG + chr7_1:77945501-77945520 Msa1040560:CDS 40.0%
ACACTCTCAACCATAGATGA+AGG - chr7_1:77945537-77945556 None:intergenic 40.0%
TGTTAGTGCAGCCATTTCTT+CGG + chr7_1:77945554-77945573 Msa1040560:CDS 40.0%
TCAATCATTGGAGCACAAAG+AGG + chr7_1:77945615-77945634 Msa1040560:CDS 40.0%
!! ATAATTCACAGTGGTGGTGG+TGG - chr7_1:77940091-77940110 None:intergenic 45.0%
AGGATAATTCACAGTGGTGG+TGG - chr7_1:77940094-77940113 None:intergenic 45.0%
CATGGCAGCATCATCAAAGA+AGG + chr7_1:77940230-77940249 Msa1040560:CDS 45.0%
TAACAGGATCATGCTGAGTG+AGG - chr7_1:77940271-77940290 None:intergenic 45.0%
ACAAAAACCAGACCATGGTC+AGG + chr7_1:77940714-77940733 Msa1040560:CDS 45.0%
CAAACATACACACCTGACCA+TGG - chr7_1:77940729-77940748 None:intergenic 45.0%
ATTCCTTAACCAGTGCACTC+GGG - chr7_1:77941149-77941168 None:intergenic 45.0%
TAGTTCCTTAACTAGTGCCC+CGG + chr7_1:77941266-77941285 Msa1040560:intron 45.0%
AAACAGATTATAGGCGGGGT+AGG - chr7_1:77941372-77941391 None:intergenic 45.0%
! TAGTTCGGTTCGAATCGGTT+CGG + chr7_1:77941462-77941481 Msa1040560:intron 45.0%
!! AAAGGCGTTAACTAGTGTCC+GGG - chr7_1:77941885-77941904 None:intergenic 45.0%
!! ATTCTTAAAAGAGTGCCCCG+GGG + chr7_1:77941990-77942009 Msa1040560:intron 45.0%
TATGTTTAACCAGTGCCCCA+GGG - chr7_1:77942108-77942127 None:intergenic 45.0%
ATATGTTTAACCAGTGCCCC+AGG - chr7_1:77942109-77942128 None:intergenic 45.0%
TGGTATGCTTAACCAGTGTC+CGG + chr7_1:77942227-77942246 Msa1040560:intron 45.0%
ACTAGAAGGGTGATGCTAAC+CGG - chr7_1:77942257-77942276 None:intergenic 45.0%
CGCCTTCACAGCTCAAATTA+TGG + chr7_1:77942335-77942354 Msa1040560:intron 45.0%
! GGCAGTCATTAACTTGGTCA+AGG - chr7_1:77942913-77942932 None:intergenic 45.0%
TGACGTGGCAGTCATTAACT+TGG - chr7_1:77942667-77942686 None:intergenic 45.0%
GGAATTGACGAAAATACCCC+TGG + chr7_1:77942708-77942727 Msa1040560:intron 45.0%
GGAATTGACGAAAATACCCC+TGG - chr7_1:77942708-77942727 None:intergenic 45.0%
CGTCAATTCCCATGCCATTA+TGG + chr7_1:77942875-77942894 Msa1040560:intron 45.0%
! GGCAGTCATTAACTTGGTCA+AGG + chr7_1:77942913-77942932 Msa1040560:intron 45.0%
TTTAAGCGACCCCTATTTGC+AGG + chr7_1:77943005-77943024 Msa1040560:intron 45.0%
TTAAGCGACCCCTATTTGCA+GGG + chr7_1:77943006-77943025 Msa1040560:intron 45.0%
! ATTGGTTTCGGATGGAAAGC+AGG + chr7_1:77943134-77943153 Msa1040560:CDS 45.0%
GAATCTTCTGCAGGATGATC+AGG - chr7_1:77943168-77943187 None:intergenic 45.0%
TTGCGTGGGTTCTTCTAACT+TGG - chr7_1:77943202-77943221 None:intergenic 45.0%
GAAAGGAATTAGGTCTTGCG+TGG - chr7_1:77943217-77943236 None:intergenic 45.0%
AGCTTCTGATCTTGCACGTA+TGG - chr7_1:77943256-77943275 None:intergenic 45.0%
GGATATATAGCTAGCTAGGC+CGG + chr7_1:77943439-77943458 Msa1040560:intron 45.0%
GGATGTCAGTGGAGGAAATA+TGG + chr7_1:77943551-77943570 Msa1040560:CDS 45.0%
TGCCTACTATCGTTGCACTA+TGG + chr7_1:77943607-77943626 Msa1040560:CDS 45.0%
AGCCATAGTGCAACGATAGT+AGG - chr7_1:77943612-77943631 None:intergenic 45.0%
TATCGTTGCACTATGGCTGT+AGG + chr7_1:77943614-77943633 Msa1040560:CDS 45.0%
CAGTATGTAGGCCGATTGAT+AGG + chr7_1:77944155-77944174 Msa1040560:intron 45.0%
!! TTAACCCACTTGGGTTGGTT+TGG + chr7_1:77944601-77944620 Msa1040560:intron 45.0%
TCTCCAGTGCCAATTTAGGT+GGG + chr7_1:77944680-77944699 Msa1040560:intron 45.0%
GAAGGGTTGAGAAGCTGATA+GGG - chr7_1:77945364-77945383 None:intergenic 45.0%
TCAAGTCGAGGGTGATTGTT+GGG - chr7_1:77945386-77945405 None:intergenic 45.0%
ATGGCTATGTGTCAAGTCGA+GGG - chr7_1:77945397-77945416 None:intergenic 45.0%
TATGGCTATGTGTCAAGTCG+AGG - chr7_1:77945398-77945417 None:intergenic 45.0%
AAATGGTAGAGGAGGAACTC+TGG - chr7_1:77945427-77945446 None:intergenic 45.0%
ATGCAACATCCGCAACTACT+AGG + chr7_1:77945450-77945469 Msa1040560:CDS 45.0%
TGCAACATCCGCAACTACTA+GGG + chr7_1:77945451-77945470 Msa1040560:CDS 45.0%
TGCCCTAGTTGAAGTAATGG+TGG - chr7_1:77945507-77945526 None:intergenic 45.0%
GGTTGCCCTAGTTGAAGTAA+TGG - chr7_1:77945510-77945529 None:intergenic 45.0%
TCAACCATAGATGAAGGTGG+TGG - chr7_1:77945531-77945550 None:intergenic 45.0%
CTCTCAACCATAGATGAAGG+TGG - chr7_1:77945534-77945553 None:intergenic 45.0%
ATCATTGGAGCACAAAGAGG+TGG + chr7_1:77945618-77945637 Msa1040560:CDS 45.0%
!!! TACATATTTAATTTATATTT+TGG + chr7_1:77940322-77940341 Msa1040560:intron 5.0%
!!! ACATTTTTATTAATTTTTTT+AGG + chr7_1:77941059-77941078 Msa1040560:intron 5.0%
!!! CATTTTTATTAATTTTTTTA+GGG + chr7_1:77941060-77941079 Msa1040560:intron 5.0%
!!! ATTTTTATTAATTTTTTTAG+GGG + chr7_1:77941061-77941080 Msa1040560:intron 5.0%
!!! CATTATTTTTTTTTTTTTTA+AGG - chr7_1:77941699-77941718 None:intergenic 5.0%
!!! TATAAAATAATTTTTTCTTT+TGG + chr7_1:77941966-77941985 Msa1040560:intron 5.0%
!!! ACTTTTAATAAAAAATAAAA+TGG - chr7_1:77942284-77942303 None:intergenic 5.0%
!!! AAAAAATTCTAATTTTTTTT+TGG - chr7_1:77944563-77944582 None:intergenic 5.0%
TGCTGAGTGAGGAGTAGTGT+TGG - chr7_1:77940260-77940279 None:intergenic 50.0%
ATACACACCTGACCATGGTC+TGG - chr7_1:77940724-77940743 None:intergenic 50.0%
TTCCTTAACCAGTGCACTCG+GGG - chr7_1:77941148-77941167 None:intergenic 50.0%
AGTTCCTTAACTAGTGCCCC+GGG + chr7_1:77941267-77941286 Msa1040560:intron 50.0%
TATTGTTAACCAGTGCCCCC+GGG - chr7_1:77941287-77941306 None:intergenic 50.0%
GTATTGTTAACCAGTGCCCC+CGG - chr7_1:77941288-77941307 None:intergenic 50.0%
GAAATGTTAACCGGTGTCCC+CGG + chr7_1:77941864-77941883 Msa1040560:intron 50.0%
! AAGGCGTTAACTAGTGTCCG+GGG - chr7_1:77941884-77941903 None:intergenic 50.0%
!! TTCTTAAAAGAGTGCCCCGG+GGG + chr7_1:77941991-77942010 Msa1040560:intron 50.0%
GAAATGTTAACCGGTGCCCT+GGG + chr7_1:77942089-77942108 Msa1040560:intron 50.0%
AAATGTTAACCGGTGCCCTG+GGG + chr7_1:77942090-77942109 Msa1040560:intron 50.0%
GGTATGCTTAACCAGTGTCC+GGG + chr7_1:77942228-77942247 Msa1040560:intron 50.0%
GTATGCTTAACCAGTGTCCG+GGG + chr7_1:77942229-77942248 Msa1040560:intron 50.0%
CTTCTGCAGGATGATCAGGA+GGG - chr7_1:77943164-77943183 None:intergenic 50.0%
TCTTCTGCAGGATGATCAGG+AGG - chr7_1:77943165-77943184 None:intergenic 50.0%
GAGTGTGAGGAATCTTCTGC+AGG - chr7_1:77943177-77943196 None:intergenic 50.0%
TCTTGCACGTATGGAAACCC+TGG - chr7_1:77943247-77943266 None:intergenic 50.0%
TGGTGAGGCCTAAGCTATTC+TGG + chr7_1:77943384-77943403 Msa1040560:intron 50.0%
TCCACATTCATGCATGTGGC+CGG - chr7_1:77943461-77943480 None:intergenic 50.0%
AGATCAGCGATGGATGTCAG+TGG + chr7_1:77943540-77943559 Msa1040560:intron 50.0%
GATAGTAGGCACGAGGACAA+GGG - chr7_1:77943598-77943617 None:intergenic 50.0%
CCACACACCAACATCAGTGA+TGG - chr7_1:77944128-77944147 None:intergenic 50.0%
CCATCACTGATGTTGGTGTG+TGG + chr7_1:77944125-77944144 Msa1040560:intron 50.0%
!! TTGGGTTGGTTTGGTGGCAT+TGG + chr7_1:77944610-77944629 Msa1040560:intron 50.0%
!! TTGGTTTGGTGGCATTGGCT+TGG + chr7_1:77944615-77944634 Msa1040560:intron 50.0%
!! TGGTTTGGTGGCATTGGCTT+GGG + chr7_1:77944616-77944635 Msa1040560:intron 50.0%
CTCTCCAGTGCCAATTTAGG+TGG + chr7_1:77944679-77944698 Msa1040560:intron 50.0%
TAGCCCACCTAAATTGGCAC+TGG - chr7_1:77944686-77944705 None:intergenic 50.0%
! TTTGCTATGGCAGTTGCAGC+TGG - chr7_1:77945228-77945247 None:intergenic 50.0%
GGAAGGGTTGAGAAGCTGAT+AGG - chr7_1:77945365-77945384 None:intergenic 50.0%
TCGAGGGTGATTGTTGGGAA+GGG - chr7_1:77945381-77945400 None:intergenic 50.0%
GTCAAGTCGAGGGTGATTGT+TGG - chr7_1:77945387-77945406 None:intergenic 50.0%
! GAGGAACTCTGGAGAGGTTA+TGG - chr7_1:77945416-77945435 None:intergenic 50.0%
GCAACCACCACCTTCATCTA+TGG + chr7_1:77945524-77945543 Msa1040560:CDS 50.0%
GTGCATGATTGTGGAAGCTG+AGG - chr7_1:77945687-77945706 None:intergenic 50.0%
!! ATTCACAGTGGTGGTGGTGG+TGG - chr7_1:77940088-77940107 None:intergenic 55.0%
GTTGTTGTGGAGGAAGTCGC+CGG - chr7_1:77940129-77940148 None:intergenic 55.0%
GTTCCTTAACTAGTGCCCCG+GGG + chr7_1:77941268-77941287 Msa1040560:intron 55.0%
TTCCTTAACTAGTGCCCCGG+GGG + chr7_1:77941269-77941288 Msa1040560:intron 55.0%
ATTGTTAACCAGTGCCCCCG+GGG - chr7_1:77941286-77941305 None:intergenic 55.0%
TAACTAGTGTCCGGGGACAC+CGG - chr7_1:77941877-77941896 None:intergenic 55.0%
GGAAATGTTAACCGGTGCCC+TGG + chr7_1:77942088-77942107 Msa1040560:intron 55.0%
TGCAAGATCAGAAGCTCCCC+TGG + chr7_1:77943260-77943279 Msa1040560:CDS 55.0%
TCAGCGATGGATGTCAGTGG+AGG + chr7_1:77943543-77943562 Msa1040560:CDS 55.0%
ACGAGGACAAGGGTTACCCT+TGG - chr7_1:77943588-77943607 None:intergenic 55.0%
CGATAGTAGGCACGAGGACA+AGG - chr7_1:77943599-77943618 None:intergenic 55.0%
GTGCAACGATAGTAGGCACG+AGG - chr7_1:77943605-77943624 None:intergenic 55.0%
AGGATGCCCAGTTCGCAAAC+AGG + chr7_1:77943634-77943653 Msa1040560:CDS 55.0%
!! ACCCACTTGGGTTGGTTTGG+TGG + chr7_1:77944604-77944623 Msa1040560:intron 55.0%
GCCACCAAACCAACCCAAGT+GGG - chr7_1:77944608-77944627 None:intergenic 55.0%
TGCCACCAAACCAACCCAAG+TGG - chr7_1:77944609-77944628 None:intergenic 55.0%
GAATCGAACCTGAGACCTCG+AGG - chr7_1:77944660-77944679 None:intergenic 55.0%
CTATGGCAGTTGCAGCTGGT+GGG - chr7_1:77945224-77945243 None:intergenic 55.0%
GTCGAGGGTGATTGTTGGGA+AGG - chr7_1:77945382-77945401 None:intergenic 55.0%
! GTAGAGGAGGAACTCTGGAG+AGG - chr7_1:77945422-77945441 None:intergenic 55.0%
GGAGCACAAAGAGGTGGTGA+TGG + chr7_1:77945624-77945643 Msa1040560:CDS 55.0%
CTTGCAGGTGTAGTTCCTGC+AGG + chr7_1:77945657-77945676 Msa1040560:CDS 55.0%
GTCGCCGGAGGAGCTTAAGA+AGG - chr7_1:77940114-77940133 None:intergenic 60.0%
!! TGCCCCGAGTGCACTGGTTA+AGG + chr7_1:77941143-77941162 Msa1040560:intron 60.0%
TCTTGTTAACGAGCGCCCCC+GGG - chr7_1:77942009-77942028 None:intergenic 60.0%
! GTCTTGTTAACGAGCGCCCC+CGG - chr7_1:77942010-77942029 None:intergenic 60.0%
TTAACCAGTGTCCGGGGCAC+CGG + chr7_1:77942235-77942254 Msa1040560:intron 60.0%
GCCGGCCACATGCATGAATG+TGG + chr7_1:77943457-77943476 Msa1040560:intron 60.0%
!! GTGGCATTGGCTTGGGACCT+AGG + chr7_1:77944623-77944642 Msa1040560:intron 60.0%
! TCGAGGAGGAGCACACTCCT+AGG - chr7_1:77944643-77944662 None:intergenic 60.0%
! TAGGAGTGTGCTCCTCCTCG+AGG + chr7_1:77944642-77944661 Msa1040560:intron 60.0%
TCGAACCTGAGACCTCGAGG+AGG - chr7_1:77944657-77944676 None:intergenic 60.0%
CAGTTGCAGCTGGTGGGAGT+GGG - chr7_1:77945218-77945237 None:intergenic 60.0%
GCTATGGCAGTTGCAGCTGG+TGG - chr7_1:77945225-77945244 None:intergenic 60.0%
GGAAGCTGAGGTGAACCTGC+AGG - chr7_1:77945675-77945694 None:intergenic 60.0%
GTTGTGGAGGAAGTCGCCGG+AGG - chr7_1:77940126-77940145 None:intergenic 65.0%
AACCAGTGCCCCGAGTGCAC+TGG + chr7_1:77941137-77941156 Msa1040560:intron 65.0%
AACCAGTGCACTCGGGGCAC+TGG - chr7_1:77941142-77941161 None:intergenic 65.0%
! TGCCCCCGGGGCACTAGTTA+AGG - chr7_1:77941274-77941293 None:intergenic 65.0%
CTTGTTAACGAGCGCCCCCG+GGG - chr7_1:77942008-77942027 None:intergenic 65.0%
TAACCAGTGCCCCAGGGCAC+CGG - chr7_1:77942102-77942121 None:intergenic 65.0%
GGTGATGCTAACCGGTGCCC+CGG - chr7_1:77942249-77942268 None:intergenic 65.0%
GTGCTCCTCCTCGAGGTCTC+AGG + chr7_1:77944649-77944668 Msa1040560:intron 65.0%
CTGGTGGGAGTGGGTGAGTG+TGG - chr7_1:77945209-77945228 None:intergenic 65.0%
GCAGTTGCAGCTGGTGGGAG+TGG - chr7_1:77945219-77945238 None:intergenic 65.0%
! AACTAGTGCCCCGGGGGCAC+TGG + chr7_1:77941275-77941294 Msa1040560:intron 70.0%
TAACCGGTGCCCTGGGGCAC+TGG + chr7_1:77942096-77942115 Msa1040560:intron 70.0%
CTAACCGGTGCCCCGGACAC+TGG - chr7_1:77942242-77942261 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 77940077 77945725 77940077 ID=Msa1040560;Name=Msa1040560
chr7_1 mRNA 77940077 77945725 77940077 ID=Msa1040560-mRNA-1;Parent=Msa1040560;Name=Msa1040560-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.2|0|1|1|1|6|0|441
chr7_1 exon 77940077 77940292 77940077 ID=Msa1040560-mRNA-1:exon:20669;Parent=Msa1040560-mRNA-1
chr7_1 exon 77940406 77940477 77940406 ID=Msa1040560-mRNA-1:exon:20670;Parent=Msa1040560-mRNA-1
chr7_1 exon 77940589 77940735 77940589 ID=Msa1040560-mRNA-1:exon:20671;Parent=Msa1040560-mRNA-1
chr7_1 exon 77943078 77943281 77943078 ID=Msa1040560-mRNA-1:exon:20672;Parent=Msa1040560-mRNA-1
chr7_1 exon 77943542 77943655 77943542 ID=Msa1040560-mRNA-1:exon:20673;Parent=Msa1040560-mRNA-1
chr7_1 exon 77945153 77945725 77945153 ID=Msa1040560-mRNA-1:exon:20674;Parent=Msa1040560-mRNA-1
chr7_1 CDS 77940077 77940292 77940077 ID=Msa1040560-mRNA-1:cds;Parent=Msa1040560-mRNA-1
chr7_1 CDS 77940406 77940477 77940406 ID=Msa1040560-mRNA-1:cds;Parent=Msa1040560-mRNA-1
chr7_1 CDS 77940589 77940735 77940589 ID=Msa1040560-mRNA-1:cds;Parent=Msa1040560-mRNA-1
chr7_1 CDS 77943078 77943281 77943078 ID=Msa1040560-mRNA-1:cds;Parent=Msa1040560-mRNA-1
chr7_1 CDS 77943542 77943655 77943542 ID=Msa1040560-mRNA-1:cds;Parent=Msa1040560-mRNA-1
chr7_1 CDS 77945153 77945725 77945153 ID=Msa1040560-mRNA-1:cds;Parent=Msa1040560-mRNA-1
Gene Sequence

>Msa1040560

ATGGAAAACCACCACCACCACCACTGTGAATTATCCTTCTTAAGCTCCTCCGGCGACTTCCTCCACAACAACAGTATAGATCCTCCGATCAAAGAAATGGATTTCTTCTCATCATCACCTAATAAAAACAACAAAGAAGATGATCAAGATCAACATGGCAGCATCATCAAAGAAGGATCACCAACACTACTCCTCACTCAGCATGATCCTGTTAACACTGGACTGAATTTAACGTGTTCAAGTGCTGCAGTTTCAAAAGAAAAAAATCTTAAAAATTCTGAAACTGAGATGAGTATGCTTGAAAGTGAATTGAGGAGGGTGCAAGAAGAGAATCATAAATTGAGAATTATGTTAGAACAAATTACCAAAAGCTATAGCCAACTACAAGCTCAGTTGTTCATCACTTTGCAGAAACAAAAACCAGACCATGGTCAGAATATGGAAGAAAATCATGGGATGGTATCAGAACAAAAAAAATTGAATAATAATGCATTGGTTTCGGATGGAAAGCAGGCTTGCCCTCCTGATCATCCTGCAGAAGATTCCTCACACTCATCCAAGTTAGAAGAACCCACGCAAGACCTAATTCCTTTCAAAAAAGCCAGGGTTTCCATACGTGCAAGATCAGAAGCTCCCCTGATCAGCGATGGATGTCAGTGGAGGAAATATGGACAAAAAATGGCCAAGGGTAACCCTTGTCCTCGTGCCTACTATCGTTGCACTATGGCTGTAGGATGCCCAGTTCGCAAACAGGTTCAAAGATGTGCAGAAGACAAGACAATACTAACAACAACATACGAAGGCAACCACACTCACCCACTCCCACCAGCTGCAACTGCCATAGCAAACACAATATCAGCAGCTGCAGCAATGCTGCTATCAACTTCAACCTCATCAACACTTAGAAAGGAATCAGCCGGATATTTATCTAATTCATTTCCCTATGCAACAATGTCAAGTACCCTATCAGCTTCTCAACCCTTCCCAACAATCACCCTCGACTTGACACATAGCCATAACCTCTCCAGAGTTCCTCCTCTACCATTTCAAATGCAACATCCGCAACTACTAGGGATTAATCCATTGTTCTTCTCACAGAAGCTACCACCATTACTTCAACTAGGGCAACCACCACCTTCATCTATGGTTGAGAGTGTTAGTGCAGCCATTTCTTCGGATCCAAATTTTACTACAGCTTTGGCCGCAGCAATTTCATCAATCATTGGAGCACAAAGAGGTGGTGATGGTAATAATAATCTTGCAGGTGTAGTTCCTGCAGGTTCACCTCAGCTTCCACAATCATGCACTATATTCTCTACCAATTAG
Protein sequence

>Msa1040560

MENHHHHHCELSFLSSSGDFLHNNSIDPPIKEMDFFSSSPNKNNKEDDQDQHGSIIKEGSPTLLLTQHDPVNTGLNLTCSSAAVSKEKNLKNSETEMSMLESELRRVQEENHKLRIMLEQITKSYSQLQAQLFITLQKQKPDHGQNMEENHGMVSEQKKLNNNALVSDGKQACPPDHPAEDSSHSSKLEEPTQDLIPFKKARVSIRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDKTILTTTYEGNHTHPLPPAATAIANTISAAAAMLLSTSTSSTLRKESAGYLSNSFPYATMSSTLSASQPFPTITLDLTHSHNLSRVPPLPFQMQHPQLLGINPLFFSQKLPPLLQLGQPPPSSMVESVSAAISSDPNFTTALAAAISSIIGAQRGGDGNNNLAGVVPAGSPQLPQSCTIFSTN*