AlfalfaGEDB | Msa1040780

M. sativa cultivar zhongmu-4 / Msa1040780

KEGG: K03083
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1040780	CAA48472.1	99.272	412	3	0	1	412	1	412	0.0	855

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1040780	sp\|P51139\|MSK3_MEDSA	99.270	411	3	0	2	412	1	411	0.0	853

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1040780	G7KTQ8	99.272	412	3	0	1	412	1	412	0.0	855

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1040780	MtrunA17_Chr7g0270371	99.272	412	3	0	1	412	1	412	0.0	855
Msa1040780	MtrunA17_Chr1g0194201	89.346	413	42	2	1	412	1	412	0.0	776
Msa1040780	MtrunA17_Chr1g0193081	87.348	411	49	3	2	410	1	410	0.0	747
Msa1040780	MtrunA17_Chr7g0246591	73.479	411	95	3	6	403	60	469	0.0	645
Msa1040780	MtrunA17_Chr2g0277011	81.389	360	67	0	46	405	61	420	0.0	642
Msa1040780	MtrunA17_Chr2g0320011	79.784	371	73	2	38	408	52	420	0.0	635
Msa1040780	MtrunA17_Chr8g0350311	73.464	407	102	1	3	403	61	467	0.0	634
Msa1040780	MtrunA17_Chr2g0284091	75.936	374	88	2	35	408	1	372	0.0	617
Msa1040780	MtrunA17_Chr4g0045841	35.616	292	173	7	81	364	61	345	1.93e-56	190
Msa1040780	MtrunA17_Chr8g0387401	36.027	297	174	7	79	366	56	345	5.41e-55	186

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1040780	AT5G26751.1	89.242	409	39	2	2	410	1	404	762
Msa1040780	AT5G14640.1	86.098	410	55	2	2	410	1	409	746
Msa1040780	AT5G14640.2	86.098	410	55	2	2	410	1	409	746
Msa1040780	AT3G05840.2	86.667	405	53	1	2	406	1	404	745
Msa1040780	AT3G05840.1	86.667	405	53	1	2	406	1	404	745
Msa1040780	AT4G00720.1	77.273	396	78	3	24	412	81	471	652
Msa1040780	AT1G09840.3	72.881	413	104	2	1	405	1	413	638
Msa1040780	AT1G09840.7	72.881	413	104	2	1	405	1	413	638
Msa1040780	AT1G09840.10	72.881	413	104	2	1	405	1	413	638
Msa1040780	AT1G09840.6	72.881	413	104	2	1	405	1	413	638

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Find 165 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGCGCACACACCTGCTT+TGG	0.400436	7_1:-78251586	None:intergenic
AAGAAGAAAGAAGAGACAAA+TGG	0.408855	7_1:-78250685	None:intergenic
AAGATAAGAGGTACAAGAAC+CGG	0.374643	7_1:+78251903	Msa1040780:CDS
AATAAATTGGATGGTAGGTT+GGG	0.434945	7_1:-78254041	None:intergenic
AATCCGTGGGATTCGGAATT+AGG	0.274878	7_1:-78250709	None:intergenic
AATTTAAACTCTGTATAATT+AGG	0.220898	7_1:-78253193	None:intergenic
AATTTATCATATCATAATAA+TGG	0.350484	7_1:-78254253	None:intergenic
ACAAGATCCACAGCTTCAGG+AGG	0.667608	7_1:-78253343	None:intergenic
ACACCACAGCCATTGACATC+TGG	0.495084	7_1:+78252797	Msa1040780:CDS
ACAGCTGTGCTTCGAAGATT+TGG	0.289263	7_1:-78253388	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGGTATTATATTTATCCAAC+GGG	+	chr7_1:78250429-78250448	Msa1040780:five_prime_UTR	30.0%
GGTATTATATTTATCCAACG+GGG	+	chr7_1:78250430-78250449	Msa1040780:five_prime_UTR	30.0%
GAAGAGATTTAATCGAAAGA+AGG	+	chr7_1:78250565-78250584	Msa1040780:five_prime_UTR	30.0%
AAGAAGAAAGAAGAGACAAA+TGG	-	chr7_1:78250688-78250707	None:intergenic	30.0%
GAAAAATGAAGCAATGAAAG+AGG	-	chr7_1:78250827-78250846	None:intergenic	30.0%
ATCTCAGAGAAAAATCAAGT+GGG	-	chr7_1:78250898-78250917	None:intergenic	30.0%
TTATCTATAAATCCAGAAGC+AGG	-	chr7_1:78251268-78251287	None:intergenic	30.0%
CATGAAAATTAGGGATGATA+AGG	+	chr7_1:78251336-78251355	Msa1040780:CDS	30.0%
CTAAATCTATATGCAGGAAA+TGG	+	chr7_1:78251483-78251502	Msa1040780:intron	30.0%
GACAATTATATGTCCAGTTT+CGG	-	chr7_1:78251539-78251558	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	78250429	78254290	78250429	ID=Msa1040780;Name=Msa1040780
chr7_1	mRNA	78250429	78254290	78250429	ID=Msa1040780-mRNA-1;Parent=Msa1040780;Name=Msa1040780-mRNA-1;_AED=0.10;_eAED=0.10;_QI=448\|1\|1\|1\|0.84\|0.78\|14\|383\|412
chr7_1	exon	78250429	78250789	78250429	ID=Msa1040780-mRNA-1:exon:20805;Parent=Msa1040780-mRNA-1
chr7_1	exon	78251134	78251160	78251134	ID=Msa1040780-mRNA-1:exon:20806;Parent=Msa1040780-mRNA-1
chr7_1	exon	78251181	78251357	78251181	ID=Msa1040780-mRNA-1:exon:20807;Parent=Msa1040780-mRNA-1
chr7_1	exon	78251499	78251594	78251499	ID=Msa1040780-mRNA-1:exon:20808;Parent=Msa1040780-mRNA-1
chr7_1	exon	78251688	78251747	78251688	ID=Msa1040780-mRNA-1:exon:20809;Parent=Msa1040780-mRNA-1
chr7_1	exon	78251854	78252126	78251854	ID=Msa1040780-mRNA-1:exon:20810;Parent=Msa1040780-mRNA-1
chr7_1	exon	78252271	78252345	78252271	ID=Msa1040780-mRNA-1:exon:20811;Parent=Msa1040780-mRNA-1
chr7_1	exon	78252572	78252628	78252572	ID=Msa1040780-mRNA-1:exon:20812;Parent=Msa1040780-mRNA-1
chr7_1	exon	78252718	78252858	78252718	ID=Msa1040780-mRNA-1:exon:20813;Parent=Msa1040780-mRNA-1
chr7_1	exon	78252946	78252996	78252946	ID=Msa1040780-mRNA-1:exon:20814;Parent=Msa1040780-mRNA-1
chr7_1	exon	78253151	78253246	78253151	ID=Msa1040780-mRNA-1:exon:20815;Parent=Msa1040780-mRNA-1
chr7_1	exon	78253325	78253408	78253325	ID=Msa1040780-mRNA-1:exon:20816;Parent=Msa1040780-mRNA-1
chr7_1	exon	78253625	78253727	78253625	ID=Msa1040780-mRNA-1:exon:20817;Parent=Msa1040780-mRNA-1
chr7_1	exon	78253822	78254290	78253822	ID=Msa1040780-mRNA-1:exon:20818;Parent=Msa1040780-mRNA-1
chr7_1	five_prime_UTR	78250429	78250789	78250429	ID=Msa1040780-mRNA-1:five_prime_utr;Parent=Msa1040780-mRNA-1
chr7_1	five_prime_UTR	78251134	78251160	78251134	ID=Msa1040780-mRNA-1:five_prime_utr;Parent=Msa1040780-mRNA-1
chr7_1	five_prime_UTR	78251181	78251240	78251181	ID=Msa1040780-mRNA-1:five_prime_utr;Parent=Msa1040780-mRNA-1
chr7_1	CDS	78251241	78251357	78251241	ID=Msa1040780-mRNA-1:cds;Parent=Msa1040780-mRNA-1
chr7_1	CDS	78251499	78251594	78251499	ID=Msa1040780-mRNA-1:cds;Parent=Msa1040780-mRNA-1
chr7_1	CDS	78251688	78251747	78251688	ID=Msa1040780-mRNA-1:cds;Parent=Msa1040780-mRNA-1
chr7_1	CDS	78251854	78252126	78251854	ID=Msa1040780-mRNA-1:cds;Parent=Msa1040780-mRNA-1
chr7_1	CDS	78252271	78252345	78252271	ID=Msa1040780-mRNA-1:cds;Parent=Msa1040780-mRNA-1
chr7_1	CDS	78252572	78252628	78252572	ID=Msa1040780-mRNA-1:cds;Parent=Msa1040780-mRNA-1
chr7_1	CDS	78252718	78252858	78252718	ID=Msa1040780-mRNA-1:cds;Parent=Msa1040780-mRNA-1
chr7_1	CDS	78252946	78252996	78252946	ID=Msa1040780-mRNA-1:cds;Parent=Msa1040780-mRNA-1
chr7_1	CDS	78253151	78253246	78253151	ID=Msa1040780-mRNA-1:cds;Parent=Msa1040780-mRNA-1
chr7_1	CDS	78253325	78253408	78253325	ID=Msa1040780-mRNA-1:cds;Parent=Msa1040780-mRNA-1
chr7_1	CDS	78253625	78253727	78253625	ID=Msa1040780-mRNA-1:cds;Parent=Msa1040780-mRNA-1
chr7_1	CDS	78253822	78253907	78253822	ID=Msa1040780-mRNA-1:cds;Parent=Msa1040780-mRNA-1
chr7_1	three_prime_UTR	78253908	78254290	78253908	ID=Msa1040780-mRNA-1:three_prime_utr;Parent=Msa1040780-mRNA-1

Gene Sequence

>Msa1040780

ATGATGGCATCAGGTGGTGTTGCACCTGCTTCTGGATTTATAGATAAGAATGCAAGTTCAGTTGGTGTTGAAAAGTTGCCTGAGGAGATGAATGACATGAAAATTAGGGATGATAAGGAAATGGAAGCCGCTACCATTGTAGATGGAAATGGGACCGAAACTGGACATATAATTGTCACAACCATTGGTGGTAAAAATGGCCAGCCAAAGCAGACAATAAGTTACATGGCCGAGCGTGTTGTTGGACATGGATCTTTTGGTGTAGTTTTTCAGGCAAAGTGTTTGGAGACTGGAGAAACTGTGGCTATAAAGAAGGTTCTTCAAGATAAGAGGTACAAGAACCGGGAATTGCAAACTATGCGCCTTCTGGACCACCCTAATGTTGTATCTTTGAAGCACTGCTTCTTCTCAACGACTGAAAAGGACGAGCTTTATCTTAACCTGGTGCTTGAATATGTTCCTGAGACTGTCAGCCGTGTGATTAGACACTACAACAAAATGAATCAAAGAATGCCTATGATATATGTCAAACTTTATTCTTACCAGATTTGCAGGGCACTTGCTTATATTCACAACAGTATTGGAGTATGTCACAGGGATATGAAACCTCAAAATTTACTGGTCAATCCTCACACCCACCAACTGAAGATATGCGACTTTGGAAGTGCTAAAGTCTTGGTAAAAGGTGAACCAAACATATCTTACATCTGTTCTAGGTACTATAGAGCTCCTGAGCTTATATTCGGTGCAACTGAGTACACCACAGCCATTGACATCTGGTCAGCTGGTTGCGTACTTGGTGAACTTTTGCTTGGCCAGCCACTGTTTCCTGGTGAGAGTGGAGTAGACCAACTTGTGGAAATTATCAAGGTTTTAGGCACCCCAACAAGGGAAGAAATCAAGTGCATGAATCCTAATTATACAGAGTTTAAATTTCCTCAAATCAAAGCTCATCCATGGCATAAGATTTTTCACAAGAGAATGCCTCCTGAAGCTGTGGATCTTGTCTCAAGACTATTGCAATACTCTCCAAATCTTCGAAGCACAGCTTTGGAGGCTTTGGTTCATCCATTCTATGATGAGCTGCGCGATCCAAACACTCGGTTGCCAAATGGGCGTTTCCTTCCACCATTATTTAACTTCAAAGTCAATGAGCTCAAGGGAGTACCTGCAGAGATGCTGGTGAAACTGGTTCCACCTCATGCAAGAAAGCAATGTGCCTTGTTCGGGTCATCATGA

Protein sequence

>Msa1040780

MMASGGVAPASGFIDKNASSVGVEKLPEEMNDMKIRDDKEMEAATIVDGNGTETGHIIVTTIGGKNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVSRVIRHYNKMNQRMPMIYVKLYSYQICRALAYIHNSIGVCHRDMKPQNLLVNPHTHQLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRSTALEALVHPFYDELRDPNTRLPNGRFLPPLFNFKVNELKGVPAEMLVKLVPPHARKQCALFGSS*