AlfalfaGEDB | Msa1041270

M. sativa cultivar zhongmu-4 / Msa1041270

KEGG: K13127
GO: -
PFAM: PF00642.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041270	KEH19406.1	81.416	113	19	1	12	124	31	141	2.99e-60	192

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041270	sp\|Q9FNG6\|C3H51_ARATH	52.564	156	24	2	19	124	129	284	1.26e-45	154

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041270	A0A072TQE4	81.416	113	19	1	12	124	31	141	1.43e-60	192

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TFs/TRs:

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Gene ID	Type	Classification
Msa1041270	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041270	MtrunA17_Chr7g0269781	51.323	189	24	3	1	122	50	237	8.55e-55	174

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041270	AT5G06420.1	52.564	156	24	2	19	124	129	284	1.28e-46	154
Msa1041270	AT5G06420.2	52.564	156	24	2	19	124	129	284	1.28e-46	154
Msa1041270	AT1G01350.1	51.923	156	25	2	19	124	94	249	1.57e-45	150

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Find 54 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAAAGTTGGGCTTCT+CGG	0.382812	7_1:+78855990	None:intergenic
AACCCACACACTGAAGAAGC+AGG	0.577488	7_1:+78856147	None:intergenic
AAGAAACCTAACCTGCTGGC+TGG	0.483916	7_1:+78856303	None:intergenic
AATCCTGCTTCTTCAGTGTG+TGG	0.499613	7_1:-78856150	Msa1041270:five_prime_UTR
AATGGAATGAAGCCGAGAAG+AGG	0.595307	7_1:-78855702	Msa1041270:CDS
ACACACTGAAGAAGCAGGAT+TGG	0.528434	7_1:+78856152	None:intergenic
ACCCGGACTTGTAATCGCCT+CGG	0.560050	7_1:+78855740	None:intergenic
ACCGAGGCGATTACAAGTCC+GGG	0.556767	7_1:-78855741	Msa1041270:CDS
AGAAACCTAACCTGCTGGCT+GGG	0.540786	7_1:+78856304	None:intergenic
AGAAGAGGAGGGTGCGCTGA+TGG	0.548558	7_1:-78855687	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGTGAAGGAAATCGAAATT+GGG	+	chr7_1:78855800-78855819	None:intergenic	30.0%
AATTGAGATGACTAAAAGTG+TGG	+	chr7_1:78855908-78855927	None:intergenic	30.0%
CTTAGCTTAGCTTATTAGTA+TGG	-	chr7_1:78855959-78855978	Msa1041270:CDS	30.0%
TGAGAATGAAGAAGATAATG+AGG	-	chr7_1:78856070-78856089	Msa1041270:five_prime_UTR	30.0%
TGAGAAAAAGAACATGAAGA+AGG	-	chr7_1:78856118-78856137	Msa1041270:five_prime_UTR	30.0%
GAAGACTCAAAATGAAAGTT+GGG	+	chr7_1:78856170-78856189	None:intergenic	30.0%
TGAAGACTCAAAATGAAAGT+TGG	+	chr7_1:78856171-78856190	None:intergenic	30.0%
GAAACTCTAATATAAGTGGA+AGG	+	chr7_1:78856299-78856318	None:intergenic	30.0%
TTGTGAAGGAAATCGAAATT+GGG	+	chr7_1:78855800-78855819	None:intergenic	30.0%
AATTGAGATGACTAAAAGTG+TGG	+	chr7_1:78855908-78855927	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	78855690	78856481	78855690	ID=Msa1041270;Name=Msa1041270
chr7_1	mRNA	78855690	78856481	78855690	ID=Msa1041270-mRNA-1;Parent=Msa1041270;Name=Msa1041270-mRNA-1;_AED=0.24;_eAED=0.39;_QI=289\|0\|0.5\|1\|0\|0\|2\|0\|124
chr7_1	exon	78855690	78856186	78855690	ID=Msa1041270-mRNA-1:exon:21127;Parent=Msa1041270-mRNA-1
chr7_1	exon	78856315	78856481	78856315	ID=Msa1041270-mRNA-1:exon:21126;Parent=Msa1041270-mRNA-1
chr7_1	five_prime_UTR	78856315	78856481	78856315	ID=Msa1041270-mRNA-1:five_prime_utr;Parent=Msa1041270-mRNA-1
chr7_1	five_prime_UTR	78856065	78856186	78856065	ID=Msa1041270-mRNA-1:five_prime_utr;Parent=Msa1041270-mRNA-1
chr7_1	CDS	78855690	78856064	78855690	ID=Msa1041270-mRNA-1:cds;Parent=Msa1041270-mRNA-1

Gene Sequence	>Msa1041270 ATGATGAATGTTGAGAAAAAGAACATGAAGAAGGCTGACAGTAATGAAGAATCCGAGAAGCCCAACTTTCATTTTGAGTCTTCAAAAGAGATTCAAGTTCAACATGATAGCAAAGCAACAGCAACTTTGGAGACTGAGACTCATTTTTCAAGTTCCATCCGTGGGTCACACTCACACGGTCCTCTCAGACCTTCCACTTATATTAGAGTTTCATCAAGAATCGATTATCAACCTGACATATGCAAAGACTTCAAGGAGACCGGGTATTGTGGCTACGGCGATTCATGCAAGTTTCTTCACGACCGAGGCGATTACAAGTCCGGGTGGCAGTTGGACAAAGAATGGAATGAAGCCGAGAAGAGGAGGGTGCGCTGA
Protein sequence	>Msa1041270 MMNVEKKNMKKADSNEESEKPNFHFESSKEIQVQHDSKATATLETETHFSSSIRGSHSHGPLRPSTYIRVSSRIDYQPDICKDFKETGYCGYGDSCKFLHDRGDYKSGWQLDKEWNEAEKRRVR*