AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1041920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041920 MtrunA17_Chr7g0265291 100.000 206 0 0 1 206 1 206 9.32e-156 429
Msa1041920 MtrunA17_Chr1g0179781 78.922 204 40 2 1 203 1 202 3.05e-115 326
Msa1041920 MtrunA17_Chr5g0395181 56.098 205 81 4 2 206 16 211 1.16e-76 229
Msa1041920 MtrunA17_Chr5g0411151 57.767 206 69 5 7 203 35 231 1.41e-75 227
Msa1041920 MtrunA17_Chr4g0040071 55.392 204 75 6 7 203 15 209 6.31e-74 222
Msa1041920 MtrunA17_Chr8g0366581 58.333 204 71 5 7 203 33 229 2.94e-73 221
Msa1041920 MtrunA17_Chr2g0320521 40.249 241 95 11 1 202 1 231 1.73e-44 148
Msa1041920 MtrunA17_Chr4g0020811 51.034 145 59 6 1 136 1 142 9.88e-40 133
Msa1041920 MtrunA17_Chr2g0308401 49.296 142 61 5 4 136 1 140 8.78e-39 130
Msa1041920 MtrunA17_Chr2g0297251 35.242 227 112 5 7 203 37 258 1.87e-36 128
Msa1041920 MtrunA17_Chr2g0320561 47.651 149 67 4 4 143 1 147 4.48e-36 126
Msa1041920 MtrunA17_Chr2g0320551 47.183 142 64 4 4 136 1 140 1.80e-35 122
Msa1041920 MtrunA17_Chr7g0230511 42.754 138 74 3 5 142 7 139 8.83e-35 123
Msa1041920 MtrunA17_Chr4g0065041 42.647 136 74 1 7 142 8 139 2.68e-33 119
Msa1041920 MtrunA17_Chr8g0386511 33.333 159 93 4 48 202 4 153 4.93e-21 85.1
Msa1041920 MtrunA17_Chr8g0392151 34.615 156 76 6 9 143 15 165 3.98e-18 79.7
Msa1041920 MtrunA17_Chr4g0052451 43.902 82 40 1 61 136 10 91 8.57e-18 75.1
Msa1041920 MtrunA17_Chr5g0434331 27.363 201 110 6 4 202 40 206 1.48e-16 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041920 AT1G32700.1 55.941 202 78 5 7 203 12 207 2.23e-71 216
Msa1041920 AT4G17900.1 53.659 205 76 6 7 203 34 227 1.06e-67 207
Msa1041920 AT4G17900.2 53.659 205 76 6 7 203 20 213 1.06e-67 207
Msa1041920 AT2G27930.1 55.072 207 63 4 7 204 4 189 4.61e-67 204
Msa1041920 AT2G27930.4 55.072 207 63 4 7 204 4 189 4.61e-67 204
Msa1041920 AT1G76590.1 48.918 231 80 6 7 202 18 245 6.97e-67 206
Msa1041920 AT1G21000.2 49.362 235 76 10 7 202 13 243 2.03e-66 204
Msa1041920 AT1G21000.1 49.362 235 76 10 7 202 16 246 2.93e-66 204
Msa1041920 AT1G43000.2 46.154 221 91 7 2 202 11 223 3.40e-62 193
Msa1041920 AT1G43000.1 46.154 221 91 7 2 202 4 216 4.62e-62 192
Msa1041920 AT2G27930.3 66.187 139 36 2 7 136 4 140 2.09e-59 184
Msa1041920 AT2G27930.2 66.187 139 36 2 7 136 4 140 2.09e-59 184
Msa1041920 AT1G32700.2 56.322 174 65 5 35 203 1 168 2.85e-57 179
Msa1041920 AT5G46710.3 48.259 201 96 5 7 202 12 209 3.17e-55 175
Msa1041920 AT5G46710.1 48.259 201 96 5 7 202 28 225 5.03e-55 175
Msa1041920 AT5G46710.2 57.252 131 52 3 7 136 28 155 1.34e-46 151
Msa1041920 AT2G27930.5 52.318 151 44 3 63 204 61 192 7.45e-40 135
Msa1041920 AT2G27930.6 52.318 151 44 3 63 204 61 192 7.45e-40 135
Msa1041920 AT3G60670.1 36.979 192 104 5 1 179 1 188 9.65e-34 121
Msa1041920 AT1G31040.1 34.348 230 111 7 7 202 19 242 3.46e-33 119
Msa1041920 AT2G12646.3 43.796 137 73 2 5 141 1 133 8.60e-33 119
Msa1041920 AT2G12646.1 44.444 135 71 2 7 141 6 136 9.72e-33 119
Msa1041920 AT2G12646.2 44.444 135 71 2 7 141 6 136 9.72e-33 119
Msa1041920 AT2G01818.1 31.905 210 126 4 9 202 13 221 5.57e-26 100
Msa1041920 AT2G01818.2 30.667 150 87 4 69 202 9 157 3.65e-12 62.4

Find 105 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTTCGGTTCTGTTCTT+TGG 0.144073 7_1:-79610896 Msa1041920:CDS
GCTACTCCTTTCCCAGATTT+TGG 0.169958 7_1:+79610955 None:intergenic
TTTCTTCTCCTTGCATTTAA+AGG 0.172328 7_1:+79609622 None:intergenic
AAAAGAGAGTGTAGTGTAAT+AGG 0.211550 7_1:+79611839 None:intergenic
GAATACAATACAACCCTATT+TGG 0.214365 7_1:-79609497 Msa1041920:three_prime_UTR
TACTATGCATTATTGATTCT+TGG 0.219611 7_1:+79609290 None:intergenic
ATTCCTTCTAAACTCAAAAT+TGG 0.257186 7_1:-79609550 Msa1041920:three_prime_UTR
GTCCAAGGTACTTCATGATT+TGG 0.286507 7_1:-79609395 Msa1041920:three_prime_UTR
TGGCTCAATGCGGTGGGATT+TGG 0.304487 7_1:+79611689 None:intergenic
TCATTTCGGTTCTGTTCTTT+GGG 0.305955 7_1:-79610895 Msa1041920:CDS
TTTAATTATTATCTAATAGT+TGG 0.310894 7_1:-79609263 Msa1041920:three_prime_UTR
GGATTCAATGGACGGAGATT+TGG 0.315477 7_1:+79611710 None:intergenic
CACATGGGCCGTTTACATAA+AGG 0.328803 7_1:-79609152 None:intergenic
TTACTACCTGAATGACTTGA+TGG 0.329584 7_1:+79611371 None:intergenic
TAGTGTAATAGGGACGAAAA+AGG 0.345244 7_1:+79611850 None:intergenic
TTAATTATTATCTAATAGTT+GGG 0.345699 7_1:-79609262 Msa1041920:three_prime_UTR
GTTAGGCCTCAACCAAAATC+TGG 0.351742 7_1:-79610967 Msa1041920:CDS
CAAAGACCATCAAGTCATTC+AGG 0.358735 7_1:-79611377 Msa1041920:intron
GTCGTTGAATTCTAAGTTGA+AGG 0.367643 7_1:-79611806 Msa1041920:five_prime_UTR
GAAGAAAAGGTATACCTCAT+AGG 0.379000 7_1:-79609606 Msa1041920:CDS
ATACCTCATAGGGCACCTTT+TGG 0.387290 7_1:-79609595 Msa1041920:CDS
GTTCTGTTCTTTGGGTTGTA+AGG 0.391861 7_1:-79610887 Msa1041920:intron
TGGAGATGCAAGCTTTGCTT+TGG 0.396373 7_1:-79609755 Msa1041920:CDS
GGAGCTTGTTGGATTCATTT+CGG 0.401131 7_1:-79610909 Msa1041920:CDS
ACACAGTGTTGGTGCCTCCT+TGG 0.407393 7_1:-79611540 Msa1041920:CDS
CTCCTTGCATTTAAAGGAGG+TGG 0.416107 7_1:+79609628 None:intergenic
CAGAAAGTGTTGGACATTAG+TGG 0.416506 7_1:-79611036 Msa1041920:CDS
AAGTAAAGGAAAGGGTATAT+AGG 0.426584 7_1:-79609370 Msa1041920:three_prime_UTR
GGTTCCTCATTCTAATGGGA+TGG 0.428560 7_1:-79609574 Msa1041920:exon
GAGATTGAAAGTGGTGGCTG+AGG 0.430293 7_1:+79611910 None:intergenic
TATTAAATTAAAGAAGTAAA+GGG 0.434227 7_1:+79611876 None:intergenic
AAAGAGAGTGTAGTGTAATA+GGG 0.435032 7_1:+79611840 None:intergenic
GCGGTGGGATTTGGATTCAA+TGG 0.442150 7_1:+79611698 None:intergenic
TGTGGTTACCTTTATGTAAA+CGG 0.445061 7_1:+79609144 None:intergenic
GGAGGTGGAGGAGGCGTGAG+AGG 0.445087 7_1:+79609643 None:intergenic
GTTCCTCATTCTAATGGGAT+GGG 0.451443 7_1:-79609573 Msa1041920:exon
GCTCACATTTGTGAGATTTG+TGG 0.456800 7_1:-79610934 Msa1041920:CDS
AGATGCAAGCTTTGCTTTGG+AGG 0.464996 7_1:-79609752 Msa1041920:CDS
GCTTTGGAGGGTAAGAATGA+AGG 0.469335 7_1:-79609739 Msa1041920:CDS
TCATTGTCCCACCATTCACA+TGG 0.478125 7_1:-79609168 Msa1041920:three_prime_UTR
TTCATGATTTGGAAAAGTAA+AGG 0.486797 7_1:-79609384 Msa1041920:three_prime_UTR
TTAAATGCAAGGAGAAGAAA+AGG 0.487088 7_1:-79609619 Msa1041920:CDS
GGACAATGAAAACTATAAAA+CGG 0.488038 7_1:+79609182 None:intergenic
TTCAACAATGGTTCAAGCCA+AGG 0.490118 7_1:+79611523 None:intergenic
TTATTAAATTAAAGAAGTAA+AGG 0.491405 7_1:+79611875 None:intergenic
CATTATTGATTCTTGGACAA+GGG 0.492311 7_1:+79609297 None:intergenic
GCATTTAAAGGAGGTGGAGG+AGG 0.494494 7_1:+79609634 None:intergenic
CTTCTCCTTGCATTTAAAGG+AGG 0.503493 7_1:+79609625 None:intergenic
TACAATACAACCCTATTTGG+TGG 0.509396 7_1:-79609494 Msa1041920:three_prime_UTR
TTCCAAATCATGAAGTACCT+TGG 0.515905 7_1:+79609393 None:intergenic
TAATTATTATCTAATAGTTG+GGG 0.516049 7_1:-79609261 Msa1041920:three_prime_UTR
AATGAAGGATTGACAATGGA+AGG 0.518953 7_1:-79609724 Msa1041920:CDS
AAGAAAAGGTATACCTCATA+GGG 0.519252 7_1:-79609605 Msa1041920:CDS
ATTGAAAGTGGTGGCTGAGG+GGG 0.521162 7_1:+79611913 None:intergenic
ACAATACAACCCTATTTGGT+GGG 0.523862 7_1:-79609493 Msa1041920:three_prime_UTR
GATGCAAGCTTTGCTTTGGA+GGG 0.525049 7_1:-79609751 Msa1041920:CDS
TAGGGTTGTATTGTATTCCA+AGG 0.525651 7_1:+79609502 None:intergenic
GAATTATGGACGTTGGATGA+AGG 0.525828 7_1:+79611935 None:intergenic
GATTTGTGGAAGGAGCTTGT+TGG 0.527361 7_1:-79610920 Msa1041920:CDS
GGGACCCAAACCGGAAAAGA+AGG 0.530188 7_1:+79609337 None:intergenic
AGATTGAAAGTGGTGGCTGA+GGG 0.531242 7_1:+79611911 None:intergenic
ATTTGGAAAAGTAAAGGAAA+GGG 0.542085 7_1:-79609378 Msa1041920:three_prime_UTR
AGATTAGGAGCCTTTGGAGG+GGG 0.542302 7_1:-79609422 Msa1041920:three_prime_UTR
CTCCACCTCCTTTAAATGCA+AGG 0.542768 7_1:-79609630 Msa1041920:CDS
AAAAGATTAGGAGCCTTTGG+AGG 0.548008 7_1:-79609425 Msa1041920:three_prime_UTR
CTTGCATTTAAAGGAGGTGG+AGG 0.548902 7_1:+79609631 None:intergenic
AATTAAAGAAGTAAAGGGAA+TGG 0.552187 7_1:+79611881 None:intergenic
TTAGGCCTCAACCAAAATCT+GGG 0.556600 7_1:-79610966 Msa1041920:CDS
ATGTAAACGGCCCATGTGAA+TGG 0.558549 7_1:+79609157 None:intergenic
CATTAGAATGAGGAACCAAA+AGG 0.564563 7_1:+79609580 None:intergenic
AAAGATTAGGAGCCTTTGGA+GGG 0.565639 7_1:-79609424 Msa1041920:three_prime_UTR
TGGGATTTGGATTCAATGGA+CGG 0.571190 7_1:+79611702 None:intergenic
GAACCAAAAGGTGCCCTATG+AGG 0.572485 7_1:+79609592 None:intergenic
TAAGAATGAAGGATTGACAA+TGG 0.573703 7_1:-79609728 Msa1041920:CDS
TGGACGGATGAGATTGAAAG+TGG 0.574045 7_1:+79611901 None:intergenic
CATTGTCCCACCATTCACAT+GGG 0.581558 7_1:-79609167 Msa1041920:three_prime_UTR
GATTTGGAAAAGTAAAGGAA+AGG 0.586158 7_1:-79609379 Msa1041920:three_prime_UTR
AAAAGAATTATATAATGACT+AGG 0.588212 7_1:+79609465 None:intergenic
GTCAGAGATTCAGAAAGTGT+TGG 0.588527 7_1:-79611046 Msa1041920:CDS
AATCCCATCCCATTAGAATG+AGG 0.588730 7_1:+79609570 None:intergenic
TATTGCTTAGATTGCAACAA+TGG 0.589105 7_1:-79611439 Msa1041920:CDS
GATAATGTGGCTCAATGCGG+TGG 0.592110 7_1:+79611682 None:intergenic
AAAGAAGTAAAGGGAATGGA+CGG 0.596085 7_1:+79611885 None:intergenic
AGGGTTGTATTGTATTCCAA+GGG 0.597466 7_1:+79609503 None:intergenic
ATTATTATCTAATAGTTGGG+GGG 0.600035 7_1:-79609259 Msa1041920:three_prime_UTR
CCTCAACCAAAATCTGGGAA+AGG 0.603599 7_1:-79610961 Msa1041920:CDS
TACCATTGTGGTTGATAATG+TGG 0.604405 7_1:+79611669 None:intergenic
TAAATACTTAAATACCATTG+TGG 0.605312 7_1:+79611657 None:intergenic
GCATTATTGATTCTTGGACA+AGG 0.606448 7_1:+79609296 None:intergenic
TATTGATTCTTGGACAAGGG+AGG 0.608470 7_1:+79609300 None:intergenic
AATTATTATCTAATAGTTGG+GGG 0.609457 7_1:-79609260 Msa1041920:three_prime_UTR
ACATTTGTGAGATTTGTGGA+AGG 0.623549 7_1:-79610930 Msa1041920:CDS
CAATGGACGGAGATTTGGAG+AGG 0.625790 7_1:+79611715 None:intergenic
AACAATGGTTCAAGCCAAGG+AGG 0.647379 7_1:+79611526 None:intergenic
TTAGATTGCAACAATGGTGA+TGG 0.649321 7_1:-79611433 Msa1041920:CDS
TAAACGGCCCATGTGAATGG+TGG 0.649746 7_1:+79609160 None:intergenic
TTTGAAACAGGACACAGTGT+TGG 0.663854 7_1:-79611551 Msa1041920:intron
AAACGGCCCATGTGAATGGT+GGG 0.679191 7_1:+79609161 None:intergenic
TCAGAAGAAGAATTGCGTGA+AGG 0.679765 7_1:-79609685 Msa1041920:CDS
GATTGAAAGTGGTGGCTGAG+GGG 0.679935 7_1:+79611912 None:intergenic
ATAATGTGGCTCAATGCGGT+GGG 0.680644 7_1:+79611683 None:intergenic
AAGATTAGGAGCCTTTGGAG+GGG 0.685066 7_1:-79609423 Msa1041920:three_prime_UTR
AGCCACATTATCAACCACAA+TGG 0.705584 7_1:-79611671 Msa1041920:intron
ACGGATGAGATTGAAAGTGG+TGG 0.723086 7_1:+79611904 None:intergenic
GTTGATAATGTGGCTCAATG+CGG 0.757064 7_1:+79611679 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAAATTAAAGAAGTAAA+GGG + chr7_1:79609218-79609237 None:intergenic 10.0%
!! TTATTAAATTAAAGAAGTAA+AGG + chr7_1:79609219-79609238 None:intergenic 10.0%
!!! TAATAATATTCTCTTTTTTA+CGG - chr7_1:79610537-79610556 Msa1041920:intron 10.0%
!! TTAAACTATATTTAGATAAA+GGG + chr7_1:79610883-79610902 None:intergenic 10.0%
!! ATTAAACTATATTTAGATAA+AGG + chr7_1:79610884-79610903 None:intergenic 10.0%
!! TTTAATTATTATCTAATAGT+TGG - chr7_1:79611828-79611847 Msa1041920:five_prime_UTR 10.0%
!! TTAATTATTATCTAATAGTT+GGG - chr7_1:79611829-79611848 Msa1041920:five_prime_UTR 10.0%
!!! TTTTTTTCTTCATTTTTTTG+TGG - chr7_1:79609465-79609484 Msa1041920:three_prime_UTR 15.0%
!!! TTTGATGTTTTTAAGAATAA+TGG - chr7_1:79609509-79609528 Msa1041920:three_prime_UTR 15.0%
!!! TTGATGTTTTTAAGAATAAT+GGG - chr7_1:79609510-79609529 Msa1041920:three_prime_UTR 15.0%
!! TAAACATTCATATATGAAAT+GGG + chr7_1:79609810-79609829 None:intergenic 15.0%
!! TTAAACATTCATATATGAAA+TGG + chr7_1:79609811-79609830 None:intergenic 15.0%
!!! TATATGAATGTTTAATTTTC+TGG - chr7_1:79609816-79609835 Msa1041920:intron 15.0%
!!! ATATGAATGTTTAATTTTCT+GGG - chr7_1:79609817-79609836 Msa1041920:intron 15.0%
!!! TATTATGAGTTTTATAAACA+TGG - chr7_1:79610570-79610589 Msa1041920:intron 15.0%
!!! ATTATGAGTTTTATAAACAT+GGG - chr7_1:79610571-79610590 Msa1041920:intron 15.0%
!! TTTGTTTATCTATCATAATT+AGG - chr7_1:79610637-79610656 Msa1041920:intron 15.0%
!!! TGATAATGTACAAAATTTAT+TGG + chr7_1:79610727-79610746 None:intergenic 15.0%
!! GATAATATGTAATATTTGTT+TGG - chr7_1:79610817-79610836 Msa1041920:intron 15.0%
!! AAAAGAATTATATAATGACT+AGG + chr7_1:79611629-79611648 None:intergenic 15.0%
!! TAATAAAGTTGAAAAAGATT+AGG - chr7_1:79611654-79611673 Msa1041920:intron 15.0%
!! TAATTATTATCTAATAGTTG+GGG - chr7_1:79611830-79611849 Msa1041920:five_prime_UTR 15.0%
!! TAAATACTTAAATACCATTG+TGG + chr7_1:79609437-79609456 None:intergenic 20.0%
!! TTTCTTTATTGAAAACCTAA+CGG - chr7_1:79609749-79609768 Msa1041920:CDS 20.0%
!!! TATTAATGTATTTGGTGAAA+TGG - chr7_1:79609852-79609871 Msa1041920:intron 20.0%
!!! ATTAATGTATTTGGTGAAAT+GGG - chr7_1:79609853-79609872 Msa1041920:intron 20.0%
!! TTGATGTATAATGTAATGTA+AGG - chr7_1:79609895-79609914 Msa1041920:intron 20.0%
!! TGATGTATAATGTAATGTAA+GGG - chr7_1:79609896-79609915 Msa1041920:intron 20.0%
!! ATAATTATGATGTTGAATGA+TGG + chr7_1:79610421-79610440 None:intergenic 20.0%
!!! TTATGAGTTTTATAAACATG+GGG - chr7_1:79610572-79610591 Msa1041920:intron 20.0%
!! AAAAAGAAAACTCAAAATGT+AGG + chr7_1:79610612-79610631 None:intergenic 20.0%
!!! TGAAAAATAATATGATGATG+TGG - chr7_1:79610795-79610814 Msa1041920:intron 20.0%
!! GTAAAAATGATTTACAAAGT+CGG - chr7_1:79610848-79610867 Msa1041920:intron 20.0%
!!! NNNNNNAAAGGCTTTTAAAC+AGG + chr7_1:79611051-79611070 None:intergenic 20.0%
!!! ATTTAATTTATATACCACGT+TGG + chr7_1:79611171-79611190 None:intergenic 20.0%
!! CTTGAAAGAATAAAGAAAAA+TGG - chr7_1:79611316-79611335 Msa1041920:intron 20.0%
!! AATTATTATCTAATAGTTGG+GGG - chr7_1:79611831-79611850 Msa1041920:five_prime_UTR 20.0%
! AATTAAAGAAGTAAAGGGAA+TGG + chr7_1:79609213-79609232 None:intergenic 25.0%
!!! CATTTTTTTGTGGTATACTA+TGG - chr7_1:79609475-79609494 Msa1041920:three_prime_UTR 25.0%
!!! GATTTGTTTGTTGTTTTTGT+TGG - chr7_1:79609979-79609998 Msa1041920:intron 25.0%
! ACTCAATTATACTCATCATA+TGG - chr7_1:79610345-79610364 Msa1041920:intron 25.0%
! CTCAATTATACTCATCATAT+GGG - chr7_1:79610346-79610365 Msa1041920:intron 25.0%
! GCATGATGAATAATTAAAAG+CGG + chr7_1:79610451-79610470 None:intergenic 25.0%
! GGTAAATGTACTAATTATGA+AGG + chr7_1:79610473-79610492 None:intergenic 25.0%
! GTAATTAATCGAAATGTGAA+TGG + chr7_1:79610494-79610513 None:intergenic 25.0%
! TCTATCATAATTAGGACATT+TGG - chr7_1:79610645-79610664 Msa1041920:intron 25.0%
! GCATGTCATATACAAATAAT+TGG - chr7_1:79611240-79611259 Msa1041920:intron 25.0%
! ATTCCTTCTAAACTCAAAAT+TGG - chr7_1:79611541-79611560 Msa1041920:CDS 25.0%
!!! CAATATTCAATTTTTTCCCT+TGG - chr7_1:79611572-79611591 Msa1041920:intron 25.0%
!! TTCATGATTTGGAAAAGTAA+AGG - chr7_1:79611707-79611726 Msa1041920:five_prime_UTR 25.0%
! ATTTGGAAAAGTAAAGGAAA+GGG - chr7_1:79611713-79611732 Msa1041920:five_prime_UTR 25.0%
!!! TACTATGCATTATTGATTCT+TGG + chr7_1:79611804-79611823 None:intergenic 25.0%
! ATTATTATCTAATAGTTGGG+GGG - chr7_1:79611832-79611851 Msa1041920:five_prime_UTR 25.0%
! AATTAAAAAGCAAGTCTTTG+TGG - chr7_1:79611883-79611902 Msa1041920:five_prime_UTR 25.0%
! GGACAATGAAAACTATAAAA+CGG + chr7_1:79611912-79611931 None:intergenic 25.0%
! AAAGAGAGTGTAGTGTAATA+GGG + chr7_1:79609254-79609273 None:intergenic 30.0%
! AAAAGAGAGTGTAGTGTAAT+AGG + chr7_1:79609255-79609274 None:intergenic 30.0%
! AAAAACGGTGTTTTCAACAA+TGG + chr7_1:79609583-79609602 None:intergenic 30.0%
ATCCGACAAATGTTGAAAAA+CGG + chr7_1:79609598-79609617 None:intergenic 30.0%
TATTGCTTAGATTGCAACAA+TGG - chr7_1:79609652-79609671 Msa1041920:CDS 30.0%
AAAACCTAACGGCAAAATAT+AGG - chr7_1:79609760-79609779 Msa1041920:CDS 30.0%
GCATTGCAGATTCAAAAAAT+GGG - chr7_1:79609782-79609801 Msa1041920:intron 30.0%
TGTATAATGTAATGTAAGGG+TGG - chr7_1:79609899-79609918 Msa1041920:intron 30.0%
!!! GAGTTTTGTTCTTGAATGTT+AGG - chr7_1:79610107-79610126 Msa1041920:intron 30.0%
!! GTTGATAATGATATGGACAT+TGG + chr7_1:79610309-79610328 None:intergenic 30.0%
!! TGTGCATGTTGATAATGATA+TGG + chr7_1:79610316-79610335 None:intergenic 30.0%
! AAATGTAGGTGATGATGTAT+GGG + chr7_1:79610386-79610405 None:intergenic 30.0%
GATGAATAATTAAAAGCGGT+GGG + chr7_1:79610447-79610466 None:intergenic 30.0%
TGATGAATAATTAAAAGCGG+TGG + chr7_1:79610448-79610467 None:intergenic 30.0%
AAAATCACAATGCGTCAATT+AGG + chr7_1:79610674-79610693 None:intergenic 30.0%
CAGAAACTATGAGATTTGAT+TGG + chr7_1:79610751-79610770 None:intergenic 30.0%
TAAGAATGAAGGATTGACAA+TGG - chr7_1:79611363-79611382 Msa1041920:intron 30.0%
TTTCTTCTCCTTGCATTTAA+AGG + chr7_1:79611472-79611491 None:intergenic 30.0%
TTAAATGCAAGGAGAAGAAA+AGG - chr7_1:79611472-79611491 Msa1041920:CDS 30.0%
! AAGAAAAGGTATACCTCATA+GGG - chr7_1:79611486-79611505 Msa1041920:CDS 30.0%
!!! TTTTGGTTCCTCATTCTAAT+GGG - chr7_1:79611513-79611532 Msa1041920:CDS 30.0%
!!! GTACCAATTTTGAGTTTAGA+AGG + chr7_1:79611547-79611566 None:intergenic 30.0%
GAATACAATACAACCCTATT+TGG - chr7_1:79611594-79611613 Msa1041920:intron 30.0%
GATTTGGAAAAGTAAAGGAA+AGG - chr7_1:79611712-79611731 Msa1041920:five_prime_UTR 30.0%
! AAGTAAAGGAAAGGGTATAT+AGG - chr7_1:79611721-79611740 Msa1041920:five_prime_UTR 30.0%
! AAAGAAAACTCCTTCTTTTC+CGG - chr7_1:79611744-79611763 Msa1041920:intron 30.0%
!!! GGGAGGATTTGTTTTTTTTA+GGG + chr7_1:79611777-79611796 None:intergenic 30.0%
!!! AGGGAGGATTTGTTTTTTTT+AGG + chr7_1:79611778-79611797 None:intergenic 30.0%
!! CATTATTGATTCTTGGACAA+GGG + chr7_1:79611797-79611816 None:intergenic 30.0%
AAAGAAGTAAAGGGAATGGA+CGG + chr7_1:79609209-79609228 None:intergenic 35.0%
AGTGTAATAGGGACGAAAAA+GGG + chr7_1:79609243-79609262 None:intergenic 35.0%
TAGTGTAATAGGGACGAAAA+AGG + chr7_1:79609244-79609263 None:intergenic 35.0%
! GTCGTTGAATTCTAAGTTGA+AGG - chr7_1:79609285-79609304 Msa1041920:three_prime_UTR 35.0%
!! TACCATTGTGGTTGATAATG+TGG + chr7_1:79609425-79609444 None:intergenic 35.0%
! ATGGGTCAAATGTTTGAAAC+AGG - chr7_1:79609528-79609547 Msa1041920:three_prime_UTR 35.0%
!! CACCGTTTTTCAACATTTGT+CGG - chr7_1:79609593-79609612 Msa1041920:CDS 35.0%
TTAGATTGCAACAATGGTGA+TGG - chr7_1:79609658-79609677 Msa1041920:CDS 35.0%
TTACTACCTGAATGACTTGA+TGG + chr7_1:79609723-79609742 None:intergenic 35.0%
! AATGCCTATATTTTGCCGTT+AGG + chr7_1:79609767-79609786 None:intergenic 35.0%
GGCATTGCAGATTCAAAAAA+TGG - chr7_1:79609781-79609800 Msa1041920:intron 35.0%
ACATTTGTGAGATTTGTGGA+AGG - chr7_1:79610161-79610180 Msa1041920:intron 35.0%
TTCATTTCGGTTCTGTTCTT+TGG - chr7_1:79610195-79610214 Msa1041920:intron 35.0%
TCATTTCGGTTCTGTTCTTT+GGG - chr7_1:79610196-79610215 Msa1041920:intron 35.0%
! CAAATGTAGGTGATGATGTA+TGG + chr7_1:79610387-79610406 None:intergenic 35.0%
! TGATGTTGAATGATGGAGAT+GGG + chr7_1:79610414-79610433 None:intergenic 35.0%
! ATGATGTTGAATGATGGAGA+TGG + chr7_1:79610415-79610434 None:intergenic 35.0%
! ATATATTCTGCTGCATTGAC+AGG - chr7_1:79611209-79611228 Msa1041920:intron 35.0%
! TATATTCTGCTGCATTGACA+GGG - chr7_1:79611210-79611229 Msa1041920:intron 35.0%
AATGAAGGATTGACAATGGA+AGG - chr7_1:79611367-79611386 Msa1041920:intron 35.0%
! GAAGAAAAGGTATACCTCAT+AGG - chr7_1:79611485-79611504 Msa1041920:CDS 35.0%
CATTAGAATGAGGAACCAAA+AGG + chr7_1:79611514-79611533 None:intergenic 35.0%
!!! CTTTTGGTTCCTCATTCTAA+TGG - chr7_1:79611512-79611531 Msa1041920:CDS 35.0%
AGGGTTGTATTGTATTCCAA+GGG + chr7_1:79611591-79611610 None:intergenic 35.0%
TAGGGTTGTATTGTATTCCA+AGG + chr7_1:79611592-79611611 None:intergenic 35.0%
TACAATACAACCCTATTTGG+TGG - chr7_1:79611597-79611616 Msa1041920:intron 35.0%
ACAATACAACCCTATTTGGT+GGG - chr7_1:79611598-79611617 Msa1041920:intron 35.0%
! TAGGTTTTTCCCACCAAATA+GGG + chr7_1:79611610-79611629 None:intergenic 35.0%
TGAAAAAGATTAGGAGCCTT+TGG - chr7_1:79611663-79611682 Msa1041920:intron 35.0%
! TTCCAAATCATGAAGTACCT+TGG + chr7_1:79611701-79611720 None:intergenic 35.0%
!!! TTTTTTTTAGGGACCCAAAC+CGG + chr7_1:79611766-79611785 None:intergenic 35.0%
!! GCATTATTGATTCTTGGACA+AGG + chr7_1:79611798-79611817 None:intergenic 35.0%
GAATTATGGACGTTGGATGA+AGG + chr7_1:79609159-79609178 None:intergenic 40.0%
GTGTAATAGGGACGAAAAAG+GGG + chr7_1:79609242-79609261 None:intergenic 40.0%
AGAGAGAGAGAGAGAGTAAA+CGG + chr7_1:79609311-79609330 None:intergenic 40.0%
TGGGATTTGGATTCAATGGA+CGG + chr7_1:79609392-79609411 None:intergenic 40.0%
!! GTTGATAATGTGGCTCAATG+CGG + chr7_1:79609415-79609434 None:intergenic 40.0%
AGCCACATTATCAACCACAA+TGG - chr7_1:79609420-79609439 Msa1041920:three_prime_UTR 40.0%
! TTTGAAACAGGACACAGTGT+TGG - chr7_1:79609540-79609559 Msa1041920:three_prime_UTR 40.0%
TTCAACAATGGTTCAAGCCA+AGG + chr7_1:79609571-79609590 None:intergenic 40.0%
CAAAGACCATCAAGTCATTC+AGG - chr7_1:79609714-79609733 Msa1041920:CDS 40.0%
! GTCAGAGATTCAGAAAGTGT+TGG - chr7_1:79610045-79610064 Msa1041920:intron 40.0%
!! CAGAAAGTGTTGGACATTAG+TGG - chr7_1:79610055-79610074 Msa1041920:intron 40.0%
TTAGGCCTCAACCAAAATCT+GGG - chr7_1:79610125-79610144 Msa1041920:intron 40.0%
GCTCACATTTGTGAGATTTG+TGG - chr7_1:79610157-79610176 Msa1041920:intron 40.0%
!! GGAGCTTGTTGGATTCATTT+CGG - chr7_1:79610182-79610201 Msa1041920:intron 40.0%
!! GTTCTGTTCTTTGGGTTGTA+AGG - chr7_1:79610204-79610223 Msa1041920:intron 40.0%
! ATATTCTGCTGCATTGACAG+GGG - chr7_1:79611211-79611230 Msa1041920:intron 40.0%
TCAGAAGAAGAATTGCGTGA+AGG - chr7_1:79611406-79611425 Msa1041920:CDS 40.0%
CTTCTCCTTGCATTTAAAGG+AGG + chr7_1:79611469-79611488 None:intergenic 40.0%
GTTCCTCATTCTAATGGGAT+GGG - chr7_1:79611518-79611537 Msa1041920:CDS 40.0%
AATCCCATCCCATTAGAATG+AGG + chr7_1:79611524-79611543 None:intergenic 40.0%
! CTAGGTTTTTCCCACCAAAT+AGG + chr7_1:79611611-79611630 None:intergenic 40.0%
AAAAGATTAGGAGCCTTTGG+AGG - chr7_1:79611666-79611685 Msa1041920:intron 40.0%
AAAGATTAGGAGCCTTTGGA+GGG - chr7_1:79611667-79611686 Msa1041920:intron 40.0%
! GTCCAAGGTACTTCATGATT+TGG - chr7_1:79611696-79611715 Msa1041920:five_prime_UTR 40.0%
! AAACTCCTTCTTTTCCGGTT+TGG - chr7_1:79611749-79611768 Msa1041920:intron 40.0%
! AACTCCTTCTTTTCCGGTTT+GGG - chr7_1:79611750-79611769 Msa1041920:intron 40.0%
!! TATTGATTCTTGGACAAGGG+AGG + chr7_1:79611794-79611813 None:intergenic 40.0%
AGATTGAAAGTGGTGGCTGA+GGG + chr7_1:79609183-79609202 None:intergenic 45.0%
ACGGATGAGATTGAAAGTGG+TGG + chr7_1:79609190-79609209 None:intergenic 45.0%
TGGACGGATGAGATTGAAAG+TGG + chr7_1:79609193-79609212 None:intergenic 45.0%
GGATTCAATGGACGGAGATT+TGG + chr7_1:79609384-79609403 None:intergenic 45.0%
ATAATGTGGCTCAATGCGGT+GGG + chr7_1:79609411-79609430 None:intergenic 45.0%
AACAATGGTTCAAGCCAAGG+AGG + chr7_1:79609568-79609587 None:intergenic 45.0%
GTTAGGCCTCAACCAAAATC+TGG - chr7_1:79610124-79610143 Msa1041920:intron 45.0%
!!! CCTTTCCCAGATTTTGGTTG+AGG + chr7_1:79610133-79610152 None:intergenic 45.0%
CCTCAACCAAAATCTGGGAA+AGG - chr7_1:79610130-79610149 Msa1041920:intron 45.0%
! GCTACTCCTTTCCCAGATTT+TGG + chr7_1:79610139-79610158 None:intergenic 45.0%
GATTTGTGGAAGGAGCTTGT+TGG - chr7_1:79610171-79610190 Msa1041920:intron 45.0%
! TGTAGGTGATGATGTATGGG+TGG + chr7_1:79610383-79610402 None:intergenic 45.0%
! GGAGATGGGCTTTCAAATGT+AGG + chr7_1:79610400-79610419 None:intergenic 45.0%
TGGAGATGCAAGCTTTGCTT+TGG - chr7_1:79611336-79611355 Msa1041920:intron 45.0%
AGATGCAAGCTTTGCTTTGG+AGG - chr7_1:79611339-79611358 Msa1041920:intron 45.0%
! GATGCAAGCTTTGCTTTGGA+GGG - chr7_1:79611340-79611359 Msa1041920:intron 45.0%
!! GCTTTGGAGGGTAAGAATGA+AGG - chr7_1:79611352-79611371 Msa1041920:intron 45.0%
CTTGCATTTAAAGGAGGTGG+AGG + chr7_1:79611463-79611482 None:intergenic 45.0%
CTCCACCTCCTTTAAATGCA+AGG - chr7_1:79611461-79611480 Msa1041920:CDS 45.0%
CTCCTTGCATTTAAAGGAGG+TGG + chr7_1:79611466-79611485 None:intergenic 45.0%
!! ATACCTCATAGGGCACCTTT+TGG - chr7_1:79611496-79611515 Msa1041920:CDS 45.0%
GGTTCCTCATTCTAATGGGA+TGG - chr7_1:79611517-79611536 Msa1041920:CDS 45.0%
! AAGATTAGGAGCCTTTGGAG+GGG - chr7_1:79611668-79611687 Msa1041920:intron 45.0%
TCATTGTCCCACCATTCACA+TGG - chr7_1:79611923-79611942 Msa1041920:five_prime_UTR 45.0%
CATTGTCCCACCATTCACAT+GGG - chr7_1:79611924-79611943 Msa1041920:five_prime_UTR 45.0%
ATGTAAACGGCCCATGTGAA+TGG + chr7_1:79611937-79611956 None:intergenic 45.0%
!!! TTTTTATTTATTAATGTATT+TGG - chr7_1:79609844-79609863 Msa1041920:intron 5.0%
TGAGGGGGAATTATGGACGT+TGG + chr7_1:79609166-79609185 None:intergenic 50.0%
ATTGAAAGTGGTGGCTGAGG+GGG + chr7_1:79609181-79609200 None:intergenic 50.0%
GATTGAAAGTGGTGGCTGAG+GGG + chr7_1:79609182-79609201 None:intergenic 50.0%
GAGATTGAAAGTGGTGGCTG+AGG + chr7_1:79609184-79609203 None:intergenic 50.0%
CAATGGACGGAGATTTGGAG+AGG + chr7_1:79609379-79609398 None:intergenic 50.0%
GCGGTGGGATTTGGATTCAA+TGG + chr7_1:79609396-79609415 None:intergenic 50.0%
GATAATGTGGCTCAATGCGG+TGG + chr7_1:79609412-79609431 None:intergenic 50.0%
! GGTGATGATGTATGGGTGGT+GGG + chr7_1:79610379-79610398 None:intergenic 50.0%
! AGGTGATGATGTATGGGTGG+TGG + chr7_1:79610380-79610399 None:intergenic 50.0%
GCATTTAAAGGAGGTGGAGG+AGG + chr7_1:79611460-79611479 None:intergenic 50.0%
!! GAACCAAAAGGTGCCCTATG+AGG + chr7_1:79611502-79611521 None:intergenic 50.0%
! AGATTAGGAGCCTTTGGAGG+GGG - chr7_1:79611669-79611688 Msa1041920:intron 50.0%
TTGGACAAAACCCCCTCCAA+AGG + chr7_1:79611682-79611701 None:intergenic 50.0%
!! TTTGGAGGGGGTTTTGTCCA+AGG - chr7_1:79611681-79611700 Msa1041920:five_prime_UTR 50.0%
AAACGGCCCATGTGAATGGT+GGG + chr7_1:79611933-79611952 None:intergenic 50.0%
TAAACGGCCCATGTGAATGG+TGG + chr7_1:79611934-79611953 None:intergenic 50.0%
TGGTGGCTGAGGGGGAATTA+TGG + chr7_1:79609173-79609192 None:intergenic 55.0%
TGGCTCAATGCGGTGGGATT+TGG + chr7_1:79609405-79609424 None:intergenic 55.0%
!! ACACAGTGTTGGTGCCTCCT+TGG - chr7_1:79609551-79609570 Msa1041920:three_prime_UTR 55.0%
! GCTGCATTGACAGGGGAACA+TGG - chr7_1:79611218-79611237 Msa1041920:intron 55.0%
GGGACCCAAACCGGAAAAGA+AGG + chr7_1:79611757-79611776 None:intergenic 55.0%
! GGAGGTGGAGGAGGCGTGAG+AGG + chr7_1:79611451-79611470 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 79609155 79611958 79609155 ID=Msa1041920;Name=Msa1041920
chr7_1 mRNA 79609155 79611958 79609155 ID=Msa1041920-mRNA-1;Parent=Msa1041920;Name=Msa1041920-mRNA-1;_AED=0.10;_eAED=0.10;_QI=260|1|1|1|0.75|0.6|5|427|206
chr7_1 exon 79609155 79609797 79609155 ID=Msa1041920-mRNA-1:exon:21592;Parent=Msa1041920-mRNA-1
chr7_1 exon 79610888 79611103 79610888 ID=Msa1041920-mRNA-1:exon:21591;Parent=Msa1041920-mRNA-1
chr7_1 exon 79611378 79611563 79611378 ID=Msa1041920-mRNA-1:exon:21590;Parent=Msa1041920-mRNA-1
chr7_1 exon 79611672 79611750 79611672 ID=Msa1041920-mRNA-1:exon:21589;Parent=Msa1041920-mRNA-1
chr7_1 exon 79611775 79611958 79611775 ID=Msa1041920-mRNA-1:exon:21588;Parent=Msa1041920-mRNA-1
chr7_1 five_prime_UTR 79611775 79611958 79611775 ID=Msa1041920-mRNA-1:five_prime_utr;Parent=Msa1041920-mRNA-1
chr7_1 five_prime_UTR 79611675 79611750 79611675 ID=Msa1041920-mRNA-1:five_prime_utr;Parent=Msa1041920-mRNA-1
chr7_1 CDS 79611672 79611674 79611672 ID=Msa1041920-mRNA-1:cds;Parent=Msa1041920-mRNA-1
chr7_1 CDS 79611378 79611563 79611378 ID=Msa1041920-mRNA-1:cds;Parent=Msa1041920-mRNA-1
chr7_1 CDS 79610888 79611103 79610888 ID=Msa1041920-mRNA-1:cds;Parent=Msa1041920-mRNA-1
chr7_1 CDS 79609582 79609797 79609582 ID=Msa1041920-mRNA-1:cds;Parent=Msa1041920-mRNA-1
chr7_1 three_prime_UTR 79609155 79609581 79609155 ID=Msa1041920-mRNA-1:three_prime_utr;Parent=Msa1041920-mRNA-1
Gene Sequence

>Msa1041920

ATGGACACAGTGTTGGTGCCTCCTTGGCTTGAACCATTGTTGAAAACACCGTTTTTCAACATTTGTCGGATTCACGCTGATGCAGCTAGAAATGAGTGTAACATGTATTGCTTAGATTGCAACAATGGTGATGGTGCTTTTTGCTTTTATTGTCGTTCTTCAAGACACAAAGACCATCAAGTCATTCAGATAAGAAGATCTTCATATCATGATGTAGTTCGTGTGTCAGAGATTCAGAAAGTGTTGGACATTAGTGGAGTGCAAACATATGTGATAAACAGTGCTAGAGTTTTGTTCTTGAATGTTAGGCCTCAACCAAAATCTGGGAAAGGAGTAGCTCACATTTGTGAGATTTGTGGAAGGAGCTTGTTGGATTCATTTCGGTTCTGTTCTTTGGGTTGTAAGCTTGAAAGAATAAAGAAAAATGGAGATGCAAGCTTTGCTTTGGAGGGTAAGAATGAAGGATTGACAATGGAAGGAGTGTCAAGTAGTAGATCAGAAGAAGAATTGCGTGAAGGCTCAACACAAGATATGTATCCTCTCACGCCTCCTCCACCTCCTTTAAATGCAAGGAGAAGAAAAGGTATACCTCATAGGGCACCTTTTGGTTCCTCATTCTAA
Protein sequence

>Msa1041920

MDTVLVPPWLEPLLKTPFFNICRIHADAARNECNMYCLDCNNGDGAFCFYCRSSRHKDHQVIQIRRSSYHDVVRVSEIQKVLDISGVQTYVINSARVLFLNVRPQPKSGKGVAHICEICGRSLLDSFRFCSLGCKLERIKKNGDASFALEGKNEGLTMEGVSSSRSEEELREGSTQDMYPLTPPPPPLNARRRKGIPHRAPFGSSF*