Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042120 | XP_015087957.1 | 46.701 | 197 | 69 | 6 | 20 | 182 | 163 | 357 | 2.25e-37 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042120 | sp|Q9LZM4|WAKLQ_ARATH | 43.011 | 93 | 50 | 2 | 84 | 175 | 332 | 422 | 6.89e-14 | 72.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042120 | A0A1U7XCL0 | 47.208 | 197 | 68 | 6 | 20 | 182 | 167 | 361 | 8.82e-37 | 144 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042120 | MtrunA17_Chr7g0265391 | 73.585 | 106 | 25 | 1 | 80 | 182 | 310 | 415 | 5.44e-40 | 143 |
| Msa1042120 | MtrunA17_Chr7g0265391 | 81.081 | 37 | 7 | 0 | 20 | 56 | 167 | 203 | 1.16e-13 | 68.2 |
| Msa1042120 | MtrunA17_Chr3g0112391 | 38.854 | 157 | 82 | 5 | 39 | 182 | 258 | 413 | 8.55e-18 | 80.1 |
| Msa1042120 | MtrunA17_Chr3g0125471 | 41.000 | 100 | 54 | 2 | 86 | 182 | 333 | 430 | 4.39e-14 | 69.3 |
| Msa1042120 | MtrunA17_Chr3g0125491 | 42.391 | 92 | 47 | 2 | 94 | 182 | 38 | 126 | 8.63e-13 | 65.5 |
| Msa1042120 | MtrunA17_Chr2g0279661 | 39.000 | 100 | 56 | 2 | 86 | 182 | 403 | 500 | 1.13e-12 | 65.5 |
| Msa1042120 | MtrunA17_Chr1g0148501 | 43.373 | 83 | 44 | 1 | 103 | 182 | 417 | 499 | 1.34e-12 | 65.1 |
| Msa1042120 | MtrunA17_Chr1g0209361 | 44.595 | 74 | 41 | 0 | 103 | 176 | 330 | 403 | 1.51e-12 | 65.1 |
| Msa1042120 | MtrunA17_Chr3g0125461 | 40.964 | 83 | 46 | 1 | 103 | 182 | 431 | 513 | 2.76e-12 | 64.3 |
| Msa1042120 | MtrunA17_Chr1g0148461 | 35.965 | 114 | 64 | 3 | 76 | 182 | 395 | 506 | 3.26e-12 | 63.9 |
| Msa1042120 | MtrunA17_Chr3g0125431 | 39.000 | 100 | 56 | 2 | 86 | 182 | 398 | 495 | 4.28e-12 | 63.9 |
| Msa1042120 | MtrunA17_Chr3g0125451 | 32.143 | 140 | 75 | 4 | 58 | 182 | 356 | 490 | 4.70e-12 | 63.5 |
| Msa1042120 | MtrunA17_Chr1g0148491 | 35.606 | 132 | 74 | 3 | 62 | 182 | 275 | 406 | 5.01e-12 | 63.5 |
| Msa1042120 | MtrunA17_Chr2g0333181 | 36.471 | 85 | 54 | 0 | 91 | 175 | 15 | 99 | 6.18e-12 | 63.2 |
| Msa1042120 | MtrunA17_Chr1g0148511 | 42.169 | 83 | 45 | 1 | 103 | 182 | 410 | 492 | 1.01e-11 | 62.8 |
| Msa1042120 | MtrunA17_Chr1g0158171 | 40.964 | 83 | 46 | 1 | 103 | 182 | 125 | 207 | 1.32e-11 | 62.0 |
| Msa1042120 | MtrunA17_Chr1g0158291 | 40.964 | 83 | 46 | 1 | 103 | 182 | 40 | 122 | 1.61e-11 | 62.0 |
| Msa1042120 | MtrunA17_Chr3g0125441 | 32.143 | 140 | 75 | 4 | 58 | 182 | 391 | 525 | 2.84e-11 | 61.2 |
| Msa1042120 | MtrunA17_Chr1g0158201 | 37.500 | 112 | 65 | 2 | 76 | 182 | 369 | 480 | 5.08e-11 | 60.5 |
| Msa1042120 | MtrunA17_Chr5g0403051 | 32.673 | 101 | 62 | 2 | 79 | 175 | 291 | 389 | 5.32e-11 | 60.5 |
| Msa1042120 | MtrunA17_Chr7g0248881 | 38.710 | 93 | 54 | 1 | 93 | 182 | 332 | 424 | 5.34e-11 | 60.5 |
| Msa1042120 | MtrunA17_Chr7g0248904 | 38.710 | 93 | 54 | 1 | 93 | 182 | 339 | 431 | 7.05e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042120 | AT5G02070.1 | 43.011 | 93 | 50 | 2 | 84 | 175 | 332 | 422 | 7.00e-15 | 72.4 |
| Msa1042120 | AT3G53840.1 | 41.414 | 99 | 52 | 2 | 87 | 182 | 328 | 423 | 2.37e-14 | 70.9 |
| Msa1042120 | AT4G28670.1 | 41.026 | 78 | 46 | 0 | 98 | 175 | 313 | 390 | 1.22e-12 | 65.9 |
| Msa1042120 | AT4G11470.1 | 41.892 | 74 | 43 | 0 | 102 | 175 | 325 | 398 | 2.21e-11 | 62.0 |
| Msa1042120 | AT4G11480.3 | 43.243 | 74 | 42 | 0 | 102 | 175 | 310 | 383 | 2.31e-11 | 62.0 |
| Msa1042120 | AT4G11470.2 | 41.892 | 74 | 43 | 0 | 102 | 175 | 330 | 403 | 2.48e-11 | 62.0 |
| Msa1042120 | AT4G11480.4 | 43.243 | 74 | 42 | 0 | 102 | 175 | 307 | 380 | 2.54e-11 | 62.0 |
| Msa1042120 | AT4G11480.1 | 43.243 | 74 | 42 | 0 | 102 | 175 | 307 | 380 | 2.64e-11 | 62.0 |
| Msa1042120 | AT1G21250.1 | 43.373 | 83 | 44 | 1 | 103 | 182 | 396 | 478 | 3.43e-11 | 61.6 |
| Msa1042120 | AT4G11480.2 | 43.243 | 74 | 42 | 0 | 102 | 175 | 310 | 383 | 3.49e-11 | 61.2 |
Find 30 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAGTTGAAACATCATATA+AGG | 0.289996 | 7_1:-79883500 | None:intergenic |
| TCTTAGGAAGTGGTTGCTTT+GGG | 0.308970 | 7_1:+79883564 | Msa1042120:CDS |
| ATCTTAGGAAGTGGTTGCTT+TGG | 0.331108 | 7_1:+79883563 | Msa1042120:CDS |
| TGCTTTCTTCTCATTGGTCC+TGG | 0.340759 | 7_1:+79883390 | Msa1042120:CDS |
| CAATGACCCAAGATCGATAT+TGG | 0.342018 | 7_1:-79882381 | None:intergenic |
| GACCTGCTTAAAACGTTTGA+AGG | 0.380531 | 7_1:-79883432 | None:intergenic |
| TTGGGAGCCAATATCGATCT+TGG | 0.389070 | 7_1:+79882374 | Msa1042120:CDS |
| AAGATTCACCTTTACAATTC+CGG | 0.428868 | 7_1:+79882493 | Msa1042120:CDS |
| GCTTCTGAATGCTTTGCAAC+CGG | 0.438254 | 7_1:-79882512 | None:intergenic |
| CAATATCGATCTTGGGTCAT+TGG | 0.443592 | 7_1:+79882382 | Msa1042120:CDS |
| TTTGTAATAGTGATTCTGTT+GGG | 0.443696 | 7_1:+79883360 | Msa1042120:intron |
| AAACCTCATTATGCACTAGT+TGG | 0.453543 | 7_1:-79883664 | None:intergenic |
| TGGGAGCCAATATCGATCTT+GGG | 0.478276 | 7_1:+79882375 | Msa1042120:CDS |
| CGTTGCACATTTGTTTCTAG+TGG | 0.482916 | 7_1:+79882454 | Msa1042120:CDS |
| CTTTGCAACCGGAATTGTAA+AGG | 0.495267 | 7_1:-79882501 | None:intergenic |
| CTTTGTAATAGTGATTCTGT+TGG | 0.515279 | 7_1:+79883359 | Msa1042120:intron |
| CACAACAGCATCTTAGGAAG+TGG | 0.538457 | 7_1:+79883554 | Msa1042120:CDS |
| AGGTGAATCTTGTAAGCTGA+AGG | 0.555983 | 7_1:-79882481 | None:intergenic |
| AACCTCATTATGCACTAGTT+GGG | 0.559284 | 7_1:-79883663 | None:intergenic |
| CTTAGGAAGTGGTTGCTTTG+GGG | 0.590416 | 7_1:+79883565 | Msa1042120:CDS |
| GCAGAAATCAAGCGCTGGAG+AGG | 0.590846 | 7_1:+79883472 | Msa1042120:CDS |
| GTCATTGGAATGCTAGTCAA+AGG | 0.599569 | 7_1:+79882397 | Msa1042120:CDS |
| CACCCAACTAGTGCATAATG+AGG | 0.609291 | 7_1:+79883661 | Msa1042120:CDS |
| CAGCGATGATGACAAAGACC+AGG | 0.610654 | 7_1:-79883408 | None:intergenic |
| GCTGTCAAGAAAGCGAGAGT+TGG | 0.613643 | 7_1:+79883626 | Msa1042120:CDS |
| AGCTTATCAGAATGTGCAAG+TGG | 0.617147 | 7_1:+79882421 | Msa1042120:CDS |
| ATTGTGCAGAAATCAAGCGC+TGG | 0.624625 | 7_1:+79883467 | Msa1042120:CDS |
| ATTCTACATAAAGCTTGACT+AGG | 0.633201 | 7_1:-79883715 | None:intergenic |
| TAGAAACAAATGTGCAACGA+GGG | 0.648929 | 7_1:-79882450 | None:intergenic |
| CTAGAAACAAATGTGCAACG+AGG | 0.725748 | 7_1:-79882451 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTAGTTATTTTGATCCTT+TGG | + | chr7_1:79883099-79883118 | Msa1042120:intron | 25.0% |
| ! | TTTGTAATAGTGATTCTGTT+GGG | + | chr7_1:79883360-79883379 | Msa1042120:intron | 25.0% |
| !!! | AGTTAGTTATTTTGATCCTT+TGG | + | chr7_1:79883099-79883118 | Msa1042120:intron | 25.0% |
| ! | TTTGTAATAGTGATTCTGTT+GGG | + | chr7_1:79883360-79883379 | Msa1042120:intron | 25.0% |
| AAGATTCACCTTTACAATTC+CGG | + | chr7_1:79882493-79882512 | Msa1042120:CDS | 30.0% | |
| CTATTAGAGTTACGCTATTT+CGG | + | chr7_1:79882871-79882890 | Msa1042120:intron | 30.0% | |
| ! | TATTAGAGTTACGCTATTTC+GGG | + | chr7_1:79882872-79882891 | Msa1042120:intron | 30.0% |
| AAAAAAGACGCTACTACAAT+GGG | - | chr7_1:79882898-79882917 | None:intergenic | 30.0% | |
| TGTACGCTTTGTATGATATA+AGG | + | chr7_1:79882928-79882947 | Msa1042120:intron | 30.0% | |
| ATAACTAACTCAACGCTAAA+GGG | - | chr7_1:79883089-79883108 | None:intergenic | 30.0% | |
| AATAACTAACTCAACGCTAA+AGG | - | chr7_1:79883090-79883109 | None:intergenic | 30.0% | |
| CTTTGTAATAGTGATTCTGT+TGG | + | chr7_1:79883359-79883378 | Msa1042120:intron | 30.0% | |
| GTCAGTTGAAACATCATATA+AGG | - | chr7_1:79883503-79883522 | None:intergenic | 30.0% | |
| ATTCTACATAAAGCTTGACT+AGG | - | chr7_1:79883718-79883737 | None:intergenic | 30.0% | |
| AAGATTCACCTTTACAATTC+CGG | + | chr7_1:79882493-79882512 | Msa1042120:CDS | 30.0% | |
| CTATTAGAGTTACGCTATTT+CGG | + | chr7_1:79882871-79882890 | Msa1042120:intron | 30.0% | |
| ! | TATTAGAGTTACGCTATTTC+GGG | + | chr7_1:79882872-79882891 | Msa1042120:intron | 30.0% |
| AAAAAAGACGCTACTACAAT+GGG | - | chr7_1:79882898-79882917 | None:intergenic | 30.0% | |
| TGTACGCTTTGTATGATATA+AGG | + | chr7_1:79882928-79882947 | Msa1042120:intron | 30.0% | |
| ATAACTAACTCAACGCTAAA+GGG | - | chr7_1:79883089-79883108 | None:intergenic | 30.0% | |
| AATAACTAACTCAACGCTAA+AGG | - | chr7_1:79883090-79883109 | None:intergenic | 30.0% | |
| CTTTGTAATAGTGATTCTGT+TGG | + | chr7_1:79883359-79883378 | Msa1042120:intron | 30.0% | |
| GTCAGTTGAAACATCATATA+AGG | - | chr7_1:79883503-79883522 | None:intergenic | 30.0% | |
| ATTCTACATAAAGCTTGACT+AGG | - | chr7_1:79883718-79883737 | None:intergenic | 30.0% | |
| TAGAAACAAATGTGCAACGA+GGG | - | chr7_1:79882453-79882472 | None:intergenic | 35.0% | |
| !! | TCTGTTTCTGAGTCATTACA+GGG | - | chr7_1:79882539-79882558 | None:intergenic | 35.0% |
| !! | ATCTGTTTCTGAGTCATTAC+AGG | - | chr7_1:79882540-79882559 | None:intergenic | 35.0% |
| GACTCAGAAACAGATTGAAA+TGG | + | chr7_1:79882545-79882564 | Msa1042120:intron | 35.0% | |
| ! | GTCTTTTTCTGCGTGTTTTT+TGG | + | chr7_1:79882748-79882767 | Msa1042120:intron | 35.0% |
| !! | TTTTTCTGCGTGTTTTTTGG+TGG | + | chr7_1:79882751-79882770 | Msa1042120:intron | 35.0% |
| !!! | CGTGTTTTTTGGTGGTTTTT+GGG | + | chr7_1:79882759-79882778 | Msa1042120:intron | 35.0% |
| CAAAAAAGACGCTACTACAA+TGG | - | chr7_1:79882899-79882918 | None:intergenic | 35.0% | |
| TCATACAAAGCGTACAATAG+CGG | - | chr7_1:79882924-79882943 | None:intergenic | 35.0% | |
| ACGCTTTGTATGATATAAGG+AGG | + | chr7_1:79882931-79882950 | Msa1042120:intron | 35.0% | |
| !!! | TGATGTACTTTTTCGCACTT+AGG | - | chr7_1:79883058-79883077 | None:intergenic | 35.0% |
| !!! | AGGAATCATTTTGGTTAGGA+AGG | - | chr7_1:79883154-79883173 | None:intergenic | 35.0% |
| TCCTAACCAAAATGATTCCT+TGG | + | chr7_1:79883154-79883173 | Msa1042120:intron | 35.0% | |
| CCTAACCAAAATGATTCCTT+GGG | + | chr7_1:79883155-79883174 | Msa1042120:intron | 35.0% | |
| CTAACCAAAATGATTCCTTG+GGG | + | chr7_1:79883156-79883175 | Msa1042120:intron | 35.0% | |
| GTCCTTATACATCCTTCATT+TGG | + | chr7_1:79883196-79883215 | Msa1042120:intron | 35.0% | |
| TTGATTAGGAGGTTTGTCTT+GGG | - | chr7_1:79883222-79883241 | None:intergenic | 35.0% | |
| AAGACAAACCTCCTAATCAA+GGG | + | chr7_1:79883222-79883241 | Msa1042120:intron | 35.0% | |
| ! | CTCTTTTGCTTTCTTCTCAT+TGG | + | chr7_1:79883384-79883403 | Msa1042120:CDS | 35.0% |
| ! | TTTTCACACAACAGCATCTT+AGG | + | chr7_1:79883548-79883567 | Msa1042120:CDS | 35.0% |
| AACCTCATTATGCACTAGTT+GGG | - | chr7_1:79883666-79883685 | None:intergenic | 35.0% | |
| AAACCTCATTATGCACTAGT+TGG | - | chr7_1:79883667-79883686 | None:intergenic | 35.0% | |
| TAGAAACAAATGTGCAACGA+GGG | - | chr7_1:79882453-79882472 | None:intergenic | 35.0% | |
| !! | TCTGTTTCTGAGTCATTACA+GGG | - | chr7_1:79882539-79882558 | None:intergenic | 35.0% |
| !! | ATCTGTTTCTGAGTCATTAC+AGG | - | chr7_1:79882540-79882559 | None:intergenic | 35.0% |
| GACTCAGAAACAGATTGAAA+TGG | + | chr7_1:79882545-79882564 | Msa1042120:intron | 35.0% | |
| ! | GTCTTTTTCTGCGTGTTTTT+TGG | + | chr7_1:79882748-79882767 | Msa1042120:intron | 35.0% |
| !! | TTTTTCTGCGTGTTTTTTGG+TGG | + | chr7_1:79882751-79882770 | Msa1042120:intron | 35.0% |
| !!! | CGTGTTTTTTGGTGGTTTTT+GGG | + | chr7_1:79882759-79882778 | Msa1042120:intron | 35.0% |
| CAAAAAAGACGCTACTACAA+TGG | - | chr7_1:79882899-79882918 | None:intergenic | 35.0% | |
| TCATACAAAGCGTACAATAG+CGG | - | chr7_1:79882924-79882943 | None:intergenic | 35.0% | |
| ACGCTTTGTATGATATAAGG+AGG | + | chr7_1:79882931-79882950 | Msa1042120:intron | 35.0% | |
| !!! | TGATGTACTTTTTCGCACTT+AGG | - | chr7_1:79883058-79883077 | None:intergenic | 35.0% |
| !!! | AGGAATCATTTTGGTTAGGA+AGG | - | chr7_1:79883154-79883173 | None:intergenic | 35.0% |
| TCCTAACCAAAATGATTCCT+TGG | + | chr7_1:79883154-79883173 | Msa1042120:intron | 35.0% | |
| CCTAACCAAAATGATTCCTT+GGG | + | chr7_1:79883155-79883174 | Msa1042120:intron | 35.0% | |
| CTAACCAAAATGATTCCTTG+GGG | + | chr7_1:79883156-79883175 | Msa1042120:intron | 35.0% | |
| GTCCTTATACATCCTTCATT+TGG | + | chr7_1:79883196-79883215 | Msa1042120:intron | 35.0% | |
| TTGATTAGGAGGTTTGTCTT+GGG | - | chr7_1:79883222-79883241 | None:intergenic | 35.0% | |
| AAGACAAACCTCCTAATCAA+GGG | + | chr7_1:79883222-79883241 | Msa1042120:intron | 35.0% | |
| ! | CTCTTTTGCTTTCTTCTCAT+TGG | + | chr7_1:79883384-79883403 | Msa1042120:CDS | 35.0% |
| ! | TTTTCACACAACAGCATCTT+AGG | + | chr7_1:79883548-79883567 | Msa1042120:CDS | 35.0% |
| AACCTCATTATGCACTAGTT+GGG | - | chr7_1:79883666-79883685 | None:intergenic | 35.0% | |
| AAACCTCATTATGCACTAGT+TGG | - | chr7_1:79883667-79883686 | None:intergenic | 35.0% | |
| CAATGACCCAAGATCGATAT+TGG | - | chr7_1:79882384-79882403 | None:intergenic | 40.0% | |
| CAATATCGATCTTGGGTCAT+TGG | + | chr7_1:79882382-79882401 | Msa1042120:CDS | 40.0% | |
| GTCATTGGAATGCTAGTCAA+AGG | + | chr7_1:79882397-79882416 | Msa1042120:CDS | 40.0% | |
| AGCTTATCAGAATGTGCAAG+TGG | + | chr7_1:79882421-79882440 | Msa1042120:CDS | 40.0% | |
| CTAGAAACAAATGTGCAACG+AGG | - | chr7_1:79882454-79882473 | None:intergenic | 40.0% | |
| !! | CGTTGCACATTTGTTTCTAG+TGG | + | chr7_1:79882454-79882473 | Msa1042120:CDS | 40.0% |
| AGGTGAATCTTGTAAGCTGA+AGG | - | chr7_1:79882484-79882503 | None:intergenic | 40.0% | |
| CTTTGCAACCGGAATTGTAA+AGG | - | chr7_1:79882504-79882523 | None:intergenic | 40.0% | |
| TAGTGATCACTGTGTTATCG+TGG | + | chr7_1:79882640-79882659 | Msa1042120:intron | 40.0% | |
| ! | CACTCATAGAAAAGGCATGA+GGG | - | chr7_1:79882693-79882712 | None:intergenic | 40.0% |
| ! | CCTTTTCTATGAGTGGAGTT+GGG | + | chr7_1:79882698-79882717 | Msa1042120:intron | 40.0% |
| CAGAAAAAGACCATCTAAGG+AGG | - | chr7_1:79882739-79882758 | None:intergenic | 40.0% | |
| ACGCAGAAAAAGACCATCTA+AGG | - | chr7_1:79882742-79882761 | None:intergenic | 40.0% | |
| !!! | GCGTGTTTTTTGGTGGTTTT+TGG | + | chr7_1:79882758-79882777 | Msa1042120:intron | 40.0% |
| AAAAACTGCAACCAACACAG+AGG | + | chr7_1:79882988-79883007 | Msa1042120:intron | 40.0% | |
| ! | GAAGTTCTTTTCCTCTGTGT+TGG | - | chr7_1:79883002-79883021 | None:intergenic | 40.0% |
| AGGAAAAGAACTTCTCACAC+AGG | + | chr7_1:79883008-79883027 | Msa1042120:intron | 40.0% | |
| AGAACTTCTCACACAGGATA+AGG | + | chr7_1:79883014-79883033 | Msa1042120:intron | 40.0% | |
| CACACAGGATAAGGTACAAA+CGG | + | chr7_1:79883023-79883042 | Msa1042120:intron | 40.0% | |
| TGGAAACATGAAAGAGCCAA+AGG | - | chr7_1:79883118-79883137 | None:intergenic | 40.0% | |
| ! | TTGGCTCTTTCATGTTTCCA+TGG | + | chr7_1:79883118-79883137 | Msa1042120:intron | 40.0% |
| TTCATGTTTCCATGGATTCC+CGG | + | chr7_1:79883126-79883145 | Msa1042120:intron | 40.0% | |
| !!! | ATTTTGGTTAGGAAGGTTCC+GGG | - | chr7_1:79883147-79883166 | None:intergenic | 40.0% |
| !!! | CATTTTGGTTAGGAAGGTTC+CGG | - | chr7_1:79883148-79883167 | None:intergenic | 40.0% |
| !!! | CCCAAGGAATCATTTTGGTT+AGG | - | chr7_1:79883158-79883177 | None:intergenic | 40.0% |
| TTGGGGTCCTATCAATCATT+GGG | + | chr7_1:79883173-79883192 | Msa1042120:intron | 40.0% | |
| TAAGGACCCCAATGATTGAT+AGG | - | chr7_1:79883183-79883202 | None:intergenic | 40.0% | |
| GGCCAAATGAAGGATGTATA+AGG | - | chr7_1:79883201-79883220 | None:intergenic | 40.0% | |
| CTTGATTAGGAGGTTTGTCT+TGG | - | chr7_1:79883223-79883242 | None:intergenic | 40.0% | |
| CAAGACAAACCTCCTAATCA+AGG | + | chr7_1:79883221-79883240 | Msa1042120:intron | 40.0% | |
| AGACAAACCTCCTAATCAAG+GGG | + | chr7_1:79883223-79883242 | Msa1042120:intron | 40.0% | |
| GAAGAGACCATCTAATCTGT+AGG | - | chr7_1:79883256-79883275 | None:intergenic | 40.0% | |
| !! | GTCCTTCAAACGTTTTAAGC+AGG | + | chr7_1:79883430-79883449 | Msa1042120:CDS | 40.0% |
| GACCTGCTTAAAACGTTTGA+AGG | - | chr7_1:79883435-79883454 | None:intergenic | 40.0% | |
| !! | CAAACGTTTTAAGCAGGTCA+AGG | + | chr7_1:79883436-79883455 | Msa1042120:CDS | 40.0% |
| ATCTTAGGAAGTGGTTGCTT+TGG | + | chr7_1:79883563-79883582 | Msa1042120:CDS | 40.0% | |
| ! | TCTTAGGAAGTGGTTGCTTT+GGG | + | chr7_1:79883564-79883583 | Msa1042120:CDS | 40.0% |
| CAATGACCCAAGATCGATAT+TGG | - | chr7_1:79882384-79882403 | None:intergenic | 40.0% | |
| CAATATCGATCTTGGGTCAT+TGG | + | chr7_1:79882382-79882401 | Msa1042120:CDS | 40.0% | |
| GTCATTGGAATGCTAGTCAA+AGG | + | chr7_1:79882397-79882416 | Msa1042120:CDS | 40.0% | |
| AGCTTATCAGAATGTGCAAG+TGG | + | chr7_1:79882421-79882440 | Msa1042120:CDS | 40.0% | |
| CTAGAAACAAATGTGCAACG+AGG | - | chr7_1:79882454-79882473 | None:intergenic | 40.0% | |
| !! | CGTTGCACATTTGTTTCTAG+TGG | + | chr7_1:79882454-79882473 | Msa1042120:CDS | 40.0% |
| AGGTGAATCTTGTAAGCTGA+AGG | - | chr7_1:79882484-79882503 | None:intergenic | 40.0% | |
| CTTTGCAACCGGAATTGTAA+AGG | - | chr7_1:79882504-79882523 | None:intergenic | 40.0% | |
| TAGTGATCACTGTGTTATCG+TGG | + | chr7_1:79882640-79882659 | Msa1042120:intron | 40.0% | |
| ! | CACTCATAGAAAAGGCATGA+GGG | - | chr7_1:79882693-79882712 | None:intergenic | 40.0% |
| ! | CCTTTTCTATGAGTGGAGTT+GGG | + | chr7_1:79882698-79882717 | Msa1042120:intron | 40.0% |
| CAGAAAAAGACCATCTAAGG+AGG | - | chr7_1:79882739-79882758 | None:intergenic | 40.0% | |
| ACGCAGAAAAAGACCATCTA+AGG | - | chr7_1:79882742-79882761 | None:intergenic | 40.0% | |
| !!! | GCGTGTTTTTTGGTGGTTTT+TGG | + | chr7_1:79882758-79882777 | Msa1042120:intron | 40.0% |
| AAAAACTGCAACCAACACAG+AGG | + | chr7_1:79882988-79883007 | Msa1042120:intron | 40.0% | |
| ! | GAAGTTCTTTTCCTCTGTGT+TGG | - | chr7_1:79883002-79883021 | None:intergenic | 40.0% |
| AGGAAAAGAACTTCTCACAC+AGG | + | chr7_1:79883008-79883027 | Msa1042120:intron | 40.0% | |
| AGAACTTCTCACACAGGATA+AGG | + | chr7_1:79883014-79883033 | Msa1042120:intron | 40.0% | |
| CACACAGGATAAGGTACAAA+CGG | + | chr7_1:79883023-79883042 | Msa1042120:intron | 40.0% | |
| TGGAAACATGAAAGAGCCAA+AGG | - | chr7_1:79883118-79883137 | None:intergenic | 40.0% | |
| ! | TTGGCTCTTTCATGTTTCCA+TGG | + | chr7_1:79883118-79883137 | Msa1042120:intron | 40.0% |
| TTCATGTTTCCATGGATTCC+CGG | + | chr7_1:79883126-79883145 | Msa1042120:intron | 40.0% | |
| !!! | ATTTTGGTTAGGAAGGTTCC+GGG | - | chr7_1:79883147-79883166 | None:intergenic | 40.0% |
| !!! | CATTTTGGTTAGGAAGGTTC+CGG | - | chr7_1:79883148-79883167 | None:intergenic | 40.0% |
| !!! | CCCAAGGAATCATTTTGGTT+AGG | - | chr7_1:79883158-79883177 | None:intergenic | 40.0% |
| TTGGGGTCCTATCAATCATT+GGG | + | chr7_1:79883173-79883192 | Msa1042120:intron | 40.0% | |
| TAAGGACCCCAATGATTGAT+AGG | - | chr7_1:79883183-79883202 | None:intergenic | 40.0% | |
| GGCCAAATGAAGGATGTATA+AGG | - | chr7_1:79883201-79883220 | None:intergenic | 40.0% | |
| CTTGATTAGGAGGTTTGTCT+TGG | - | chr7_1:79883223-79883242 | None:intergenic | 40.0% | |
| CAAGACAAACCTCCTAATCA+AGG | + | chr7_1:79883221-79883240 | Msa1042120:intron | 40.0% | |
| AGACAAACCTCCTAATCAAG+GGG | + | chr7_1:79883223-79883242 | Msa1042120:intron | 40.0% | |
| GAAGAGACCATCTAATCTGT+AGG | - | chr7_1:79883256-79883275 | None:intergenic | 40.0% | |
| !! | GTCCTTCAAACGTTTTAAGC+AGG | + | chr7_1:79883430-79883449 | Msa1042120:CDS | 40.0% |
| GACCTGCTTAAAACGTTTGA+AGG | - | chr7_1:79883435-79883454 | None:intergenic | 40.0% | |
| !! | CAAACGTTTTAAGCAGGTCA+AGG | + | chr7_1:79883436-79883455 | Msa1042120:CDS | 40.0% |
| ATCTTAGGAAGTGGTTGCTT+TGG | + | chr7_1:79883563-79883582 | Msa1042120:CDS | 40.0% | |
| ! | TCTTAGGAAGTGGTTGCTTT+GGG | + | chr7_1:79883564-79883583 | Msa1042120:CDS | 40.0% |
| TTGGGAGCCAATATCGATCT+TGG | + | chr7_1:79882374-79882393 | Msa1042120:CDS | 45.0% | |
| TGGGAGCCAATATCGATCTT+GGG | + | chr7_1:79882375-79882394 | Msa1042120:CDS | 45.0% | |
| GCTTCTGAATGCTTTGCAAC+CGG | - | chr7_1:79882515-79882534 | None:intergenic | 45.0% | |
| TCACTGTGTTATCGTGGCAA+TGG | + | chr7_1:79882646-79882665 | Msa1042120:intron | 45.0% | |
| ! | CCACTCATAGAAAAGGCATG+AGG | - | chr7_1:79882694-79882713 | None:intergenic | 45.0% |
| ! | CCTCATGCCTTTTCTATGAG+TGG | + | chr7_1:79882691-79882710 | Msa1042120:intron | 45.0% |
| ! | GCCTTTTCTATGAGTGGAGT+TGG | + | chr7_1:79882697-79882716 | Msa1042120:intron | 45.0% |
| CCCAACTCCACTCATAGAAA+AGG | - | chr7_1:79882701-79882720 | None:intergenic | 45.0% | |
| ATGAGTGGAGTTGGGATTCT+AGG | + | chr7_1:79882706-79882725 | Msa1042120:intron | 45.0% | |
| TGAGTGGAGTTGGGATTCTA+GGG | + | chr7_1:79882707-79882726 | Msa1042120:intron | 45.0% | |
| ! | AGGGATTTTGCCTCCTTAGA+TGG | + | chr7_1:79882726-79882745 | Msa1042120:intron | 45.0% |
| ! | AGGACCCCAAGGAATCATTT+TGG | - | chr7_1:79883163-79883182 | None:intergenic | 45.0% |
| CAATGATTGATAGGACCCCA+AGG | - | chr7_1:79883174-79883193 | None:intergenic | 45.0% | |
| CTTGGGGTCCTATCAATCAT+TGG | + | chr7_1:79883172-79883191 | Msa1042120:intron | 45.0% | |
| TGGGGTCCTATCAATCATTG+GGG | + | chr7_1:79883174-79883193 | Msa1042120:intron | 45.0% | |
| GTTTGTCTTGGGCCAAATGA+AGG | - | chr7_1:79883211-79883230 | None:intergenic | 45.0% | |
| AAACCTCCTAATCAAGGGGA+AGG | + | chr7_1:79883227-79883246 | Msa1042120:intron | 45.0% | |
| AAGGAGGCCTACAGATTAGA+TGG | + | chr7_1:79883246-79883265 | Msa1042120:intron | 45.0% | |
| TTGTGTCCTGCATACAGGTT+CGG | - | chr7_1:79883282-79883301 | None:intergenic | 45.0% | |
| AACCTGTATGCAGGACACAA+TGG | + | chr7_1:79883282-79883301 | Msa1042120:intron | 45.0% | |
| ACCTGTATGCAGGACACAAT+GGG | + | chr7_1:79883283-79883302 | Msa1042120:intron | 45.0% | |
| TGCATCGTCTCTACCAAAAG+GGG | - | chr7_1:79883331-79883350 | None:intergenic | 45.0% | |
| GTGCATCGTCTCTACCAAAA+GGG | - | chr7_1:79883332-79883351 | None:intergenic | 45.0% | |
| AGTGCATCGTCTCTACCAAA+AGG | - | chr7_1:79883333-79883352 | None:intergenic | 45.0% | |
| TGCTTTCTTCTCATTGGTCC+TGG | + | chr7_1:79883390-79883409 | Msa1042120:CDS | 45.0% | |
| ATTGTGCAGAAATCAAGCGC+TGG | + | chr7_1:79883467-79883486 | Msa1042120:CDS | 45.0% | |
| CACAACAGCATCTTAGGAAG+TGG | + | chr7_1:79883554-79883573 | Msa1042120:CDS | 45.0% | |
| ! | CTTAGGAAGTGGTTGCTTTG+GGG | + | chr7_1:79883565-79883584 | Msa1042120:CDS | 45.0% |
| CACCCAACTAGTGCATAATG+AGG | + | chr7_1:79883661-79883680 | Msa1042120:CDS | 45.0% | |
| TTGGGAGCCAATATCGATCT+TGG | + | chr7_1:79882374-79882393 | Msa1042120:CDS | 45.0% | |
| TGGGAGCCAATATCGATCTT+GGG | + | chr7_1:79882375-79882394 | Msa1042120:CDS | 45.0% | |
| GCTTCTGAATGCTTTGCAAC+CGG | - | chr7_1:79882515-79882534 | None:intergenic | 45.0% | |
| TCACTGTGTTATCGTGGCAA+TGG | + | chr7_1:79882646-79882665 | Msa1042120:intron | 45.0% | |
| ! | CCACTCATAGAAAAGGCATG+AGG | - | chr7_1:79882694-79882713 | None:intergenic | 45.0% |
| ! | CCTCATGCCTTTTCTATGAG+TGG | + | chr7_1:79882691-79882710 | Msa1042120:intron | 45.0% |
| ! | GCCTTTTCTATGAGTGGAGT+TGG | + | chr7_1:79882697-79882716 | Msa1042120:intron | 45.0% |
| CCCAACTCCACTCATAGAAA+AGG | - | chr7_1:79882701-79882720 | None:intergenic | 45.0% | |
| ATGAGTGGAGTTGGGATTCT+AGG | + | chr7_1:79882706-79882725 | Msa1042120:intron | 45.0% | |
| TGAGTGGAGTTGGGATTCTA+GGG | + | chr7_1:79882707-79882726 | Msa1042120:intron | 45.0% | |
| ! | AGGGATTTTGCCTCCTTAGA+TGG | + | chr7_1:79882726-79882745 | Msa1042120:intron | 45.0% |
| ! | AGGACCCCAAGGAATCATTT+TGG | - | chr7_1:79883163-79883182 | None:intergenic | 45.0% |
| CAATGATTGATAGGACCCCA+AGG | - | chr7_1:79883174-79883193 | None:intergenic | 45.0% | |
| CTTGGGGTCCTATCAATCAT+TGG | + | chr7_1:79883172-79883191 | Msa1042120:intron | 45.0% | |
| TGGGGTCCTATCAATCATTG+GGG | + | chr7_1:79883174-79883193 | Msa1042120:intron | 45.0% | |
| GTTTGTCTTGGGCCAAATGA+AGG | - | chr7_1:79883211-79883230 | None:intergenic | 45.0% | |
| AAACCTCCTAATCAAGGGGA+AGG | + | chr7_1:79883227-79883246 | Msa1042120:intron | 45.0% | |
| AAGGAGGCCTACAGATTAGA+TGG | + | chr7_1:79883246-79883265 | Msa1042120:intron | 45.0% | |
| TTGTGTCCTGCATACAGGTT+CGG | - | chr7_1:79883282-79883301 | None:intergenic | 45.0% | |
| AACCTGTATGCAGGACACAA+TGG | + | chr7_1:79883282-79883301 | Msa1042120:intron | 45.0% | |
| ACCTGTATGCAGGACACAAT+GGG | + | chr7_1:79883283-79883302 | Msa1042120:intron | 45.0% | |
| TGCATCGTCTCTACCAAAAG+GGG | - | chr7_1:79883331-79883350 | None:intergenic | 45.0% | |
| GTGCATCGTCTCTACCAAAA+GGG | - | chr7_1:79883332-79883351 | None:intergenic | 45.0% | |
| AGTGCATCGTCTCTACCAAA+AGG | - | chr7_1:79883333-79883352 | None:intergenic | 45.0% | |
| TGCTTTCTTCTCATTGGTCC+TGG | + | chr7_1:79883390-79883409 | Msa1042120:CDS | 45.0% | |
| ATTGTGCAGAAATCAAGCGC+TGG | + | chr7_1:79883467-79883486 | Msa1042120:CDS | 45.0% | |
| CACAACAGCATCTTAGGAAG+TGG | + | chr7_1:79883554-79883573 | Msa1042120:CDS | 45.0% | |
| ! | CTTAGGAAGTGGTTGCTTTG+GGG | + | chr7_1:79883565-79883584 | Msa1042120:CDS | 45.0% |
| CACCCAACTAGTGCATAATG+AGG | + | chr7_1:79883661-79883680 | Msa1042120:CDS | 45.0% | |
| ATAACTCACTCCTGCTCTCC+TGG | + | chr7_1:79882598-79882617 | Msa1042120:intron | 50.0% | |
| ! | CTCTCCTGGTGTATGGACTA+AGG | + | chr7_1:79882612-79882631 | Msa1042120:intron | 50.0% |
| ! | TCCTGGTGTATGGACTAAGG+AGG | + | chr7_1:79882615-79882634 | Msa1042120:intron | 50.0% |
| TCCTCCTTAGTCCATACACC+AGG | - | chr7_1:79882619-79882638 | None:intergenic | 50.0% | |
| !! | GGTTTTTGGGCGTTTGTTGC+TGG | + | chr7_1:79882772-79882791 | Msa1042120:intron | 50.0% |
| ! | TTTGTTGCTGGTCTGTGTCG+CGG | + | chr7_1:79882784-79882803 | Msa1042120:intron | 50.0% |
| TTCCATCCGAACCTGTATGC+AGG | + | chr7_1:79883273-79883292 | Msa1042120:intron | 50.0% | |
| TCCCATTGTGTCCTGCATAC+AGG | - | chr7_1:79883287-79883306 | None:intergenic | 50.0% | |
| ! | GAGACTCGATGTTCCCCTTT+TGG | + | chr7_1:79883315-79883334 | Msa1042120:intron | 50.0% |
| CAGCGATGATGACAAAGACC+AGG | - | chr7_1:79883411-79883430 | None:intergenic | 50.0% | |
| GCTGTCAAGAAAGCGAGAGT+TGG | + | chr7_1:79883626-79883645 | Msa1042120:CDS | 50.0% | |
| ATAACTCACTCCTGCTCTCC+TGG | + | chr7_1:79882598-79882617 | Msa1042120:intron | 50.0% | |
| ! | CTCTCCTGGTGTATGGACTA+AGG | + | chr7_1:79882612-79882631 | Msa1042120:intron | 50.0% |
| ! | TCCTGGTGTATGGACTAAGG+AGG | + | chr7_1:79882615-79882634 | Msa1042120:intron | 50.0% |
| TCCTCCTTAGTCCATACACC+AGG | - | chr7_1:79882619-79882638 | None:intergenic | 50.0% | |
| !! | GGTTTTTGGGCGTTTGTTGC+TGG | + | chr7_1:79882772-79882791 | Msa1042120:intron | 50.0% |
| ! | TTTGTTGCTGGTCTGTGTCG+CGG | + | chr7_1:79882784-79882803 | Msa1042120:intron | 50.0% |
| TTCCATCCGAACCTGTATGC+AGG | + | chr7_1:79883273-79883292 | Msa1042120:intron | 50.0% | |
| TCCCATTGTGTCCTGCATAC+AGG | - | chr7_1:79883287-79883306 | None:intergenic | 50.0% | |
| ! | GAGACTCGATGTTCCCCTTT+TGG | + | chr7_1:79883315-79883334 | Msa1042120:intron | 50.0% |
| CAGCGATGATGACAAAGACC+AGG | - | chr7_1:79883411-79883430 | None:intergenic | 50.0% | |
| GCTGTCAAGAAAGCGAGAGT+TGG | + | chr7_1:79883626-79883645 | Msa1042120:CDS | 50.0% | |
| ACTCCTGCTCTCCTGGTGTA+TGG | + | chr7_1:79882605-79882624 | Msa1042120:intron | 55.0% | |
| AGTCCATACACCAGGAGAGC+AGG | - | chr7_1:79882611-79882630 | None:intergenic | 55.0% | |
| AGGAAGGTTCCGGGAATCCA+TGG | - | chr7_1:79883138-79883157 | None:intergenic | 55.0% | |
| CCTCCTTCCCCTTGATTAGG+AGG | - | chr7_1:79883233-79883252 | None:intergenic | 55.0% | |
| CCTCCTAATCAAGGGGAAGG+AGG | + | chr7_1:79883230-79883249 | Msa1042120:intron | 55.0% | |
| AGGCCTCCTTCCCCTTGATT+AGG | - | chr7_1:79883236-79883255 | None:intergenic | 55.0% | |
| GTCCTGCATACAGGTTCGGA+TGG | - | chr7_1:79883278-79883297 | None:intergenic | 55.0% | |
| !! | GCAGAAATCAAGCGCTGGAG+AGG | + | chr7_1:79883472-79883491 | Msa1042120:CDS | 55.0% |
| ACTCCTGCTCTCCTGGTGTA+TGG | + | chr7_1:79882605-79882624 | Msa1042120:intron | 55.0% | |
| AGTCCATACACCAGGAGAGC+AGG | - | chr7_1:79882611-79882630 | None:intergenic | 55.0% | |
| AGGAAGGTTCCGGGAATCCA+TGG | - | chr7_1:79883138-79883157 | None:intergenic | 55.0% | |
| CCTCCTTCCCCTTGATTAGG+AGG | - | chr7_1:79883233-79883252 | None:intergenic | 55.0% | |
| CCTCCTAATCAAGGGGAAGG+AGG | + | chr7_1:79883230-79883249 | Msa1042120:intron | 55.0% | |
| AGGCCTCCTTCCCCTTGATT+AGG | - | chr7_1:79883236-79883255 | None:intergenic | 55.0% | |
| GTCCTGCATACAGGTTCGGA+TGG | - | chr7_1:79883278-79883297 | None:intergenic | 55.0% | |
| !! | GCAGAAATCAAGCGCTGGAG+AGG | + | chr7_1:79883472-79883491 | Msa1042120:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 79882373 | 79883751 | 79882373 | ID=Msa1042120;Name=Msa1042120 |
| chr7_1 | mRNA | 79882373 | 79883751 | 79882373 | ID=Msa1042120-mRNA-1;Parent=Msa1042120;Name=Msa1042120-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0|0|1|1|0.5|2|0|182 |
| chr7_1 | exon | 79882373 | 79882539 | 79882373 | ID=Msa1042120-mRNA-1:exon:21654;Parent=Msa1042120-mRNA-1 |
| chr7_1 | exon | 79883370 | 79883751 | 79883370 | ID=Msa1042120-mRNA-1:exon:21655;Parent=Msa1042120-mRNA-1 |
| chr7_1 | CDS | 79882373 | 79882539 | 79882373 | ID=Msa1042120-mRNA-1:cds;Parent=Msa1042120-mRNA-1 |
| chr7_1 | CDS | 79883370 | 79883751 | 79883370 | ID=Msa1042120-mRNA-1:cds;Parent=Msa1042120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
