AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1042260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1042260 MtrunA17_Chr7g0266021 69.291 254 19 4 40 240 1 248 1.59e-106 329
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1042260 AT2G36370.1 37.073 205 85 2 80 240 42 246 4.03e-36 135

Find 56 sgRNAs with CRISPR-Local

Find 454 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGGTGGATAGTTAGTTTA+TGG 0.158903 7_1:-80086393 Msa1042260:five_prime_UTR
TGAAAGTAACATGGAAAATT+TGG 0.179484 7_1:-80084808 Msa1042260:CDS
TCATTCTTACATAAGAATTT+AGG 0.231967 7_1:-80086411 Msa1042260:five_prime_UTR
TCTCTGATGCACTTCTTCTT+TGG 0.240974 7_1:-80084833 Msa1042260:CDS
TGGAGGAAATTAGCGTAGTT+TGG 0.250284 7_1:-80086373 Msa1042260:five_prime_UTR
TCTTAGGGAGCACTTTATTT+TGG 0.259044 7_1:-80085576 Msa1042260:intron
GCATATATATCGCTGTTCTT+TGG 0.291326 7_1:-80085842 Msa1042260:CDS
ATCTCATTCTCTTCTTCAAT+TGG 0.311419 7_1:+80086154 None:intergenic
GGAGGAAATTAGCGTAGTTT+GGG 0.329166 7_1:-80086372 Msa1042260:five_prime_UTR
TTAATTTACTACCTCGTAAA+GGG 0.334057 7_1:+80085795 None:intergenic
GAAGATAACAGTAAGTTATA+TGG 0.338219 7_1:+80084984 None:intergenic
GATCGAAACAACGCAAAACT+TGG 0.405245 7_1:-80086297 Msa1042260:CDS
CCGCCTCCATCACTGTCAAT+TGG 0.407651 7_1:-80085894 Msa1042260:CDS
GCCTTCTCAGTGGAAGCTTC+AGG 0.413370 7_1:-80086015 Msa1042260:intron
AACTTCACGCACACCGCAAC+AGG 0.416021 7_1:-80086066 Msa1042260:CDS
ATTAATTTACTACCTCGTAA+AGG 0.461833 7_1:+80085794 None:intergenic
TTGCGTTGTTTCGATCGATC+TGG 0.464429 7_1:+80086304 None:intergenic
AGCTTCCACTGAGAAGGCCT+CGG 0.487850 7_1:+80086020 None:intergenic
TTATCGTAAAATGTGAGGAT+TGG 0.492119 7_1:-80085542 Msa1042260:CDS
ATTCCATTCCATTCCATCCA+TGG 0.492590 7_1:-80086239 Msa1042260:CDS
ACCCTCATTTGACTGTTGAC+AGG 0.512484 7_1:-80084953 Msa1042260:intron
TCGATCTGGCGCATGGATAC+CGG 0.517125 7_1:+80086318 None:intergenic
GTTTCGATCGATCTGGCGCA+TGG 0.522288 7_1:+80086311 None:intergenic
TGAAACCTCCATGGATGGAA+TGG 0.522979 7_1:+80086231 None:intergenic
CACCACTCTTTGTATTTCCG+AGG 0.534005 7_1:-80086037 Msa1042260:CDS
ATGATAATTAAATTGAATAC+CGG 0.534755 7_1:-80086337 Msa1042260:CDS
AACCTGTCAACAGTCAAATG+AGG 0.536573 7_1:+80084951 None:intergenic
TTCTTACATAAGAATTTAGG+TGG 0.539686 7_1:-80086408 Msa1042260:five_prime_UTR
GGTGGATAGTTAGTTTATGG+AGG 0.545727 7_1:-80086390 Msa1042260:five_prime_UTR
GAGAGTGAAACCTCCATGGA+TGG 0.550388 7_1:+80086226 None:intergenic
CCTCGTTTGCACCAACAGCT+CGG 0.558107 7_1:-80086185 Msa1042260:CDS
CAGATTCCAATTGACAGTGA+TGG 0.560531 7_1:+80085888 None:intergenic
GTCTGAGAGTGAAACCTCCA+TGG 0.569180 7_1:+80086222 None:intergenic
TCTTTGGCTTGAAAGTAACA+TGG 0.575310 7_1:-80084817 Msa1042260:CDS
ACCTGAAGCTTCCACTGAGA+AGG 0.577463 7_1:+80086014 None:intergenic
CCTCCATGGATGGAATGGAA+TGG 0.578095 7_1:+80086236 None:intergenic
ATGGATGGAATGGAATGGAA+TGG 0.583519 7_1:+80086241 None:intergenic
CCGAGCTGTTGGTGCAAACG+AGG 0.587988 7_1:+80086185 None:intergenic
GAGGAAATTAGCGTAGTTTG+GGG 0.614356 7_1:-80086371 Msa1042260:five_prime_UTR
TTAAGAATTTGCATAAACAC+AGG 0.614638 7_1:+80085865 None:intergenic
ATTCCAATTGACAGTGATGG+AGG 0.615540 7_1:+80085891 None:intergenic
TAATTTACTACCTCGTAAAG+GGG 0.615660 7_1:+80085796 None:intergenic
CCAATTGACAGTGATGGAGG+CGG 0.615834 7_1:+80085894 None:intergenic
ACCTGTCAACAGTCAAATGA+GGG 0.617095 7_1:+80084952 None:intergenic
TGGATGATGATCCGAGCTGT+TGG 0.619189 7_1:+80086174 None:intergenic
GGCCTCGGAAATACAAAGAG+TGG 0.619732 7_1:+80086035 None:intergenic
TACACTTATCGTAAAATGTG+AGG 0.624911 7_1:-80085547 Msa1042260:CDS
CCATTCCATTCCATCCATGG+AGG 0.632094 7_1:-80086236 Msa1042260:CDS
AGGAAATTAGCGTAGTTTGG+GGG 0.646303 7_1:-80086370 Msa1042260:five_prime_UTR
GAAGCAGAAGACAACTGCAA+TGG 0.646503 7_1:-80084774 Msa1042260:CDS
TATTTCCGAGGCCTTCTCAG+TGG 0.647025 7_1:-80086025 Msa1042260:CDS
AGCTGTTGGTGCAAACGAGG+AGG 0.659131 7_1:+80086188 None:intergenic
AATTTACTACCTCGTAAAGG+GGG 0.664518 7_1:+80085797 None:intergenic
ACATGGAAAATTTGGAGACG+CGG 0.672233 7_1:-80084800 Msa1042260:CDS
AGTGGTGAATGAGCCTGTTG+CGG 0.677929 7_1:+80086053 None:intergenic
TAAATCAGAAACGATGACAT+CGG 0.679192 7_1:+80086117 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTAAATAATTAATT+AGG + chr7_1:80082665-80082684 None:intergenic 0.0%
!!! TTTAATTTAAATAATTAATT+AGG - chr7_1:80082665-80082684 Msa1042260:intron 0.0%
!!! TATTAGACTTAATTTTTTTT+AGG + chr7_1:80081542-80081561 None:intergenic 10.0%
!!! ATAGTTTTATTTATTTAAGT+GGG + chr7_1:80081572-80081591 None:intergenic 10.0%
!!! TATAGTTTTATTTATTTAAG+TGG + chr7_1:80081573-80081592 None:intergenic 10.0%
!! NNNNNNATTATACAAATTGA+GGG + chr7_1:80081688-80081707 None:intergenic 10.0%
!! NNNNNNNATTATACAAATTG+AGG + chr7_1:80081689-80081708 None:intergenic 10.0%
!! AATTTAAATAATTAATTAGG+TGG + chr7_1:80082668-80082687 None:intergenic 10.0%
!!! AAAAATTCTAAAAAAAATGT+AGG + chr7_1:80082327-80082346 None:intergenic 10.0%
!!! TTTTTTCTACATTTTTTTAA+TGG - chr7_1:80082342-80082361 Msa1042260:intron 10.0%
!! AATTTAAATAATTAATTAGG+TGG - chr7_1:80082668-80082687 Msa1042260:intron 10.0%
!! TAAACAATAAAAATCTTAAT+AGG + chr7_1:80085168-80085187 None:intergenic 10.0%
!! TTAATATTAATATGATGTAT+CGG - chr7_1:80085775-80085794 Msa1042260:intron 10.0%
!! AATAAATAAGGATATAATAA+TGG + chr7_1:80085983-80086002 None:intergenic 10.0%
!!! CTTTGTTTTTTTTTTTTTTT+TGG - chr7_1:80086423-80086442 Msa1042260:five_prime_UTR 10.0%
!! ATGATAATTAAATTGAATAC+CGG - chr7_1:80079436-80079455 Msa1042260:intron 15.0%
!! AATTAATTAGACTAGAATAA+AGG + chr7_1:80080041-80080060 None:intergenic 15.0%
!! TGAAAAGAAAAAAAAAAAGA+TGG + chr7_1:80080411-80080430 None:intergenic 15.0%
!!! TTTTTTTTTCTTTTCACTTT+TGG - chr7_1:80080415-80080434 Msa1042260:intron 15.0%
!! AAGATTATAATATAGAACTA+TGG + chr7_1:80081340-80081359 None:intergenic 15.0%
!! TTAATAATAATATTGCTCTT+GGG + chr7_1:80081401-80081420 None:intergenic 15.0%
!!! TAGTTTTATTTATTTAAGTG+GGG + chr7_1:80081571-80081590 None:intergenic 15.0%
!!! TTTCGAGTTTTAAAATAAAA+GGG + chr7_1:80081865-80081884 None:intergenic 15.0%
!!! ATTTCGAGTTTTAAAATAAA+AGG + chr7_1:80081866-80081885 None:intergenic 15.0%
!!! AGAATTTTTTCTACATTTTA+AGG + chr7_1:80082097-80082116 None:intergenic 15.0%
!! AGAAAATAAAGATAAAATGT+AGG - chr7_1:80082130-80082149 Msa1042260:intron 15.0%
!! AGAAAATAAAGATAAAATGT+AGG - chr7_1:80082130-80082149 Msa1042260:intron 15.0%
!! TAAATGGAAAAAAAAATACA+TGG - chr7_1:80082295-80082314 Msa1042260:intron 15.0%
!! AAAATTCCATTAAAAATACA+TGG + chr7_1:80082406-80082425 None:intergenic 15.0%
!! TAGAAATAAAGATAAAATGT+AGG + chr7_1:80082451-80082470 None:intergenic 15.0%
!! AGAAAATAAAGATAAAATGT+AGG + chr7_1:80082130-80082149 None:intergenic 15.0%
!!! TAGAATTTTTATGCATTTTA+AGG - chr7_1:80082581-80082600 Msa1042260:intron 15.0%
!!! GTGTGTTTTTTTTTTTTAAT+CGG - chr7_1:80082997-80083016 Msa1042260:intron 15.0%
!! TCAAAAAAAAAAAAATAGTC+TGG + chr7_1:80083478-80083497 None:intergenic 15.0%
!!! ATTCAGTTAAAATCAATTTT+CGG + chr7_1:80083545-80083564 None:intergenic 15.0%
!!! ATATTAACTTTTCTAGTATA+AGG + chr7_1:80084146-80084165 None:intergenic 15.0%
!! TAAAAAACTACATTTATGTT+AGG + chr7_1:80084288-80084307 None:intergenic 15.0%
!! AACACAAGAATTAATTTAAT+TGG + chr7_1:80084413-80084432 None:intergenic 15.0%
!! AATTAGTTAAGTAATGAATT+AGG + chr7_1:80084460-80084479 None:intergenic 15.0%
!! TTAAATTAATTAGATCAAAG+AGG - chr7_1:80084506-80084525 Msa1042260:intron 15.0%
!! TAAATTAATTAGATCAAAGA+GGG - chr7_1:80084507-80084526 Msa1042260:intron 15.0%
!! ACAACAAAAAAAAAAATTTG+AGG - chr7_1:80084593-80084612 Msa1042260:intron 15.0%
!! ATAATTACTCCATTATAAAT+TGG + chr7_1:80084956-80084975 None:intergenic 15.0%
!!! AGACTTTTTTTTTTTTTTGA+AGG - chr7_1:80085355-80085374 Msa1042260:intron 15.0%
!!! TTACTACTTTTTTTGAATAT+AGG - chr7_1:80085397-80085416 Msa1042260:intron 15.0%
!!! TACTACTTTTTTTGAATATA+GGG - chr7_1:80085398-80085417 Msa1042260:intron 15.0%
!! AAAAATTCTTAAATAGTTCA+AGG - chr7_1:80085429-80085448 Msa1042260:intron 15.0%
!!! ATTAAACCAATTTTTTACTT+TGG - chr7_1:80085463-80085482 Msa1042260:intron 15.0%
!! TTTAATCCAAAGTAAAAAAT+TGG + chr7_1:80085472-80085491 None:intergenic 15.0%
!! ACTTATTTACATATATGAAA+TGG - chr7_1:80085739-80085758 Msa1042260:intron 15.0%
!! TTGATGAAATTCAATAAATA+AGG + chr7_1:80085995-80086014 None:intergenic 15.0%
!!! CTTTTTTTATAACAAATCAA+TGG + chr7_1:80086314-80086333 None:intergenic 15.0%
!! TCATTCTTACATAAGAATTT+AGG - chr7_1:80079362-80079381 Msa1042260:intron 20.0%
!!! ATTATACAGCCATTTTAAAA+AGG + chr7_1:80080617-80080636 None:intergenic 20.0%
!! GTTAATAATAATATTGCTCT+TGG + chr7_1:80081402-80081421 None:intergenic 20.0%
!!! AGTTTTATTTATTTAAGTGG+GGG + chr7_1:80081570-80081589 None:intergenic 20.0%
!! ATTCTTATTCAACCAAAATA+GGG + chr7_1:80081837-80081856 None:intergenic 20.0%
!! AATTCTTATTCAACCAAAAT+AGG + chr7_1:80081838-80081857 None:intergenic 20.0%
!!! TTCGAGTTTTAAAATAAAAG+GGG + chr7_1:80081864-80081883 None:intergenic 20.0%
!! ATTCCGAAAAACATTAAATT+AGG + chr7_1:80082721-80082740 None:intergenic 20.0%
!!! AGTATTTTTTCTGCATTTTA+AGG + chr7_1:80082209-80082228 None:intergenic 20.0%
!!! TGAATTTTTTTCGTTTATTC+TGG + chr7_1:80082262-80082281 None:intergenic 20.0%
!! GAATAAACGAAAAAAATTCA+TGG - chr7_1:80082262-80082281 Msa1042260:intron 20.0%
!! ATAAACGGAAAAAAAATACA+TGG + chr7_1:80082374-80082393 None:intergenic 20.0%
!!! GTTTTTCCATGTATTTTTAA+TGG - chr7_1:80082397-80082416 Msa1042260:intron 20.0%
!!! TAGTATTTTTCTGCATTTTA+AGG - chr7_1:80082469-80082488 Msa1042260:intron 20.0%
!! AATTCCGAAAAACATTAAAT+TGG - chr7_1:80082720-80082739 Msa1042260:intron 20.0%
!! ATTCCGAAAAACATTAAATT+GGG - chr7_1:80082721-80082740 Msa1042260:intron 20.0%
!! AAAATTCTGAGTTTCAAAAT+AGG - chr7_1:80082749-80082768 Msa1042260:intron 20.0%
!! AAATTCTGAGTTTCAAAATA+GGG - chr7_1:80082750-80082769 Msa1042260:intron 20.0%
!!! AAAATTCCGAGTTTTAAAAT+AGG - chr7_1:80082820-80082839 Msa1042260:intron 20.0%
!!! AAATTCCGAGTTTTAAAATA+GGG - chr7_1:80082821-80082840 Msa1042260:intron 20.0%
!!! TTTTTTTTTTTTGAAAGAGC+CGG - chr7_1:80083484-80083503 Msa1042260:intron 20.0%
!! GACAATATATAATTTATGCA+AGG - chr7_1:80083741-80083760 Msa1042260:intron 20.0%
!!! TTTATGTGGTTTTTTTTTTG+TGG + chr7_1:80083785-80083804 None:intergenic 20.0%
!! TTTAATCCAAATGAAACTAT+TGG + chr7_1:80084491-80084510 None:intergenic 20.0%
!! TAATATAGTTGTATATAACC+AGG - chr7_1:80084652-80084671 Msa1042260:intron 20.0%
!! AATATAGTTGTATATAACCA+GGG - chr7_1:80084653-80084672 Msa1042260:intron 20.0%
!! AAGACAATATGTATTGAATA+TGG - chr7_1:80084913-80084932 Msa1042260:intron 20.0%
!! TGTATTGAATATGGTATATT+AGG - chr7_1:80084922-80084941 Msa1042260:intron 20.0%
!! GTATTGAATATGGTATATTA+GGG - chr7_1:80084923-80084942 Msa1042260:intron 20.0%
!!! AACTACTTTTTGACAATTTT+TGG + chr7_1:80085112-80085131 None:intergenic 20.0%
!!! TGTGATAACTTTGTTTTTAT+TGG + chr7_1:80085220-80085239 None:intergenic 20.0%
!! TCACAAAACTTATCATAAAA+TGG - chr7_1:80085235-80085254 Msa1042260:intron 20.0%
!!! AAATTGGTTTAATTACTTGT+AGG + chr7_1:80085456-80085475 None:intergenic 20.0%
!! AAAAATAATAAATGCTGCAT+TGG + chr7_1:80085958-80085977 None:intergenic 20.0%
!! GTCATATATTAATATAACGA+TGG - chr7_1:80086230-80086249 Msa1042260:CDS 20.0%
! TTCTTACATAAGAATTTAGG+TGG - chr7_1:80079365-80079384 Msa1042260:intron 25.0%
! TTAAGAATTTGCATAAACAC+AGG + chr7_1:80079911-80079930 None:intergenic 25.0%
! TTAATTTACTACCTCGTAAA+GGG + chr7_1:80079981-80080000 None:intergenic 25.0%
! ATTAATTTACTACCTCGTAA+AGG + chr7_1:80079982-80080001 None:intergenic 25.0%
! TCTAGTCTAATTAATTCTCT+TGG - chr7_1:80080045-80080064 Msa1042260:intron 25.0%
! AAAAACAGTTAGAATGAACT+TGG + chr7_1:80080452-80080471 None:intergenic 25.0%
! TTCATTCTTCACTTATGTAT+CGG - chr7_1:80080495-80080514 Msa1042260:intron 25.0%
!! TTTTCTTTCTGTTATAGATG+TGG - chr7_1:80080736-80080755 Msa1042260:intron 25.0%
! TTTCTTTCTGTTATAGATGT+GGG - chr7_1:80080737-80080756 Msa1042260:intron 25.0%
! GAAGATAACAGTAAGTTATA+TGG + chr7_1:80080792-80080811 None:intergenic 25.0%
! ACATGCAAAGTAAAATACAA+CGG + chr7_1:80080872-80080891 None:intergenic 25.0%
! TGAAAGTAACATGGAAAATT+TGG - chr7_1:80080965-80080984 Msa1042260:intron 25.0%
! TATAAATAACACATCACTGA+TGG + chr7_1:80081211-80081230 None:intergenic 25.0%
!!! ATCAGTGATGTGTTATTTAT+AGG - chr7_1:80081210-80081229 Msa1042260:intron 25.0%
!!! GTTTTATTTATTTAAGTGGG+GGG + chr7_1:80081569-80081588 None:intergenic 25.0%
! NNNATTATACAAATTGAGGG+TGG + chr7_1:80081685-80081704 None:intergenic 25.0%
! TTCTTATTCAACCAAAATAG+GGG + chr7_1:80081836-80081855 None:intergenic 25.0%
! CGAAAAACATTAAATTAGGA+GGG + chr7_1:80081893-80081912 None:intergenic 25.0%
!! CCTCCTAATTTAATGTTTTT+CGG - chr7_1:80081891-80081910 Msa1042260:intron 25.0%
! AAATTCCGAGTTTCAAAATA+GGG + chr7_1:80081927-80081946 None:intergenic 25.0%
! AAAATTCCGAGTTTCAAAAT+AGG + chr7_1:80081928-80081947 None:intergenic 25.0%
! TTCCGAAAAACATTAAATTG+CGG + chr7_1:80082722-80082741 None:intergenic 25.0%
! ATAATAACATCAAATGTGGT+GGG + chr7_1:80082691-80082710 None:intergenic 25.0%
! TCATGGAAAAACAGTATAAA+TGG - chr7_1:80082279-80082298 Msa1042260:intron 25.0%
! ACATGGAAAAACAGTATAAA+CGG + chr7_1:80082389-80082408 None:intergenic 25.0%
!!! GGAATTTTTTTCGTTAATTC+TGG - chr7_1:80082418-80082437 Msa1042260:intron 25.0%
! ATAATAACATCAAATGTGGT+GGG - chr7_1:80082691-80082710 Msa1042260:intron 25.0%
! TTCCGAAAAACATTAAATTG+GGG - chr7_1:80082722-80082741 Msa1042260:intron 25.0%
! AATTCTGAGTTTCAAAATAG+GGG - chr7_1:80082751-80082770 Msa1042260:intron 25.0%
! TTCCGAAAAACATTAAATTG+AGG - chr7_1:80082722-80082741 Msa1042260:intron 25.0%
! TCCGAAAAACATTAAATTGA+GGG - chr7_1:80082794-80082813 Msa1042260:intron 25.0%
!!! AATTCCGAGTTTTAAAATAG+GGG - chr7_1:80082822-80082841 Msa1042260:intron 25.0%
!! CTACAGTGGTAATTAATTTT+AGG + chr7_1:80082896-80082915 None:intergenic 25.0%
! AAAGTTCTCAAACAAACTAT+TGG - chr7_1:80082975-80082994 Msa1042260:intron 25.0%
! TGGATCTCTTTGAATTTATA+CGG + chr7_1:80083575-80083594 None:intergenic 25.0%
! TATATAATTTATGCAAGGTC+TGG - chr7_1:80083746-80083765 Msa1042260:intron 25.0%
! TGAATTCCAATAGTTTCATT+TGG - chr7_1:80084482-80084501 Msa1042260:intron 25.0%
! AAAACCAAAAAGCAACTATA+TGG + chr7_1:80084537-80084556 None:intergenic 25.0%
! AATAAGAAGTGAGAAAAACA+AGG + chr7_1:80085015-80085034 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG - chr7_1:80085014-80085033 Msa1042260:CDS 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr7_1:80085027-80085046 Msa1042260:intron 25.0%
! CATTTCTCTTTATAATGTGA+TGG - chr7_1:80085142-80085161 Msa1042260:intron 25.0%
! AATGAATTGTTTATTCCCAT+TGG - chr7_1:80085678-80085697 Msa1042260:intron 25.0%
!!! ATCGGATTTTCTAAAAAGTT+AGG - chr7_1:80085793-80085812 Msa1042260:intron 25.0%
! ACTAGGTTATACTAAACTTA+AGG + chr7_1:80085857-80085876 None:intergenic 25.0%
! TCCACTAACTACAATTAATA+AGG - chr7_1:80086025-80086044 Msa1042260:CDS 25.0%
! CCACTAACTACAATTAATAA+GGG - chr7_1:80086026-80086045 Msa1042260:CDS 25.0%
!!! ATTGATTGTGTTGATTTCAA+TGG + chr7_1:80086078-80086097 None:intergenic 25.0%
!!! CACTTTTTCTCATTATTTCA+CGG - chr7_1:80086187-80086206 Msa1042260:CDS 25.0%
! TTGTTATAAAAAAAGTCCAG+TGG - chr7_1:80086319-80086338 Msa1042260:CDS 25.0%
! TTAGGTGGATAGTTAGTTTA+TGG - chr7_1:80079380-80079399 Msa1042260:intron 30.0%
ATCTCATTCTCTTCTTCAAT+TGG + chr7_1:80079622-80079641 None:intergenic 30.0%
TAAATCAGAAACGATGACAT+CGG + chr7_1:80079659-80079678 None:intergenic 30.0%
TAATTTACTACCTCGTAAAG+GGG + chr7_1:80079980-80079999 None:intergenic 30.0%
AAATCAGAACACTACGTTAA+TGG + chr7_1:80080103-80080122 None:intergenic 30.0%
!! CTGATTTTCACTTTTATCCA+AGG - chr7_1:80080116-80080135 Msa1042260:intron 30.0%
!! ACTTTGGAATTTAAACTCCT+TGG + chr7_1:80080136-80080155 None:intergenic 30.0%
TACACTTATCGTAAAATGTG+AGG - chr7_1:80080226-80080245 Msa1042260:intron 30.0%
TTATCGTAAAATGTGAGGAT+TGG - chr7_1:80080231-80080250 Msa1042260:intron 30.0%
GTATTTGCGTTAATGGAAAT+TGG + chr7_1:80080280-80080299 None:intergenic 30.0%
TCCATTAACGCAAATACAAA+TGG - chr7_1:80080283-80080302 Msa1042260:intron 30.0%
TCCATTTGTATTTGCGTTAA+TGG + chr7_1:80080287-80080306 None:intergenic 30.0%
ATTAACGCAAATACAAATGG+AGG - chr7_1:80080286-80080305 Msa1042260:intron 30.0%
AAATGTGTATGTACCATGAT+CGG + chr7_1:80080339-80080358 None:intergenic 30.0%
TACATACAAAATTCCTTGCT+AGG + chr7_1:80080524-80080543 None:intergenic 30.0%
!! GAATTTCCGCCTTTTTAAAA+TGG - chr7_1:80080605-80080624 Msa1042260:intron 30.0%
!! ATACAGCCATTTTAAAAAGG+CGG + chr7_1:80080614-80080633 None:intergenic 30.0%
AGATGCAAGAGAATAAAAAG+GGG + chr7_1:80081143-80081162 None:intergenic 30.0%
GAGATGCAAGAGAATAAAAA+GGG + chr7_1:80081144-80081163 None:intergenic 30.0%
AGAGATGCAAGAGAATAAAA+AGG + chr7_1:80081145-80081164 None:intergenic 30.0%
TTGTGCTAAACTAGTATTTG+AGG + chr7_1:80081363-80081382 None:intergenic 30.0%
CATCAGATTTATGTCCAAAA+AGG + chr7_1:80081654-80081673 None:intergenic 30.0%
TCTTATTCAACCAAAATAGG+GGG + chr7_1:80081835-80081854 None:intergenic 30.0%
CCGAAAAACATTAAATTAGG+AGG + chr7_1:80081894-80081913 None:intergenic 30.0%
AATTCCGAGTTTCAAAATAG+GGG + chr7_1:80081926-80081945 None:intergenic 30.0%
TCCGAAAAACATTAAATTGC+GGG + chr7_1:80081954-80081973 None:intergenic 30.0%
TAATAACATCAAATGTGGTG+GGG + chr7_1:80082692-80082711 None:intergenic 30.0%
GATAATAACATCAAATGTGG+TGG + chr7_1:80082690-80082709 None:intergenic 30.0%
GTGGATAATAACATCAAATG+TGG + chr7_1:80082687-80082706 None:intergenic 30.0%
GTGGATAATAACATCAAATG+TGG - chr7_1:80082687-80082706 Msa1042260:intron 30.0%
GATAATAACATCAAATGTGG+TGG - chr7_1:80082690-80082709 Msa1042260:intron 30.0%
TAATAACATCAAATGTGGTG+GGG - chr7_1:80082692-80082711 Msa1042260:intron 30.0%
TCCGAAAAACATTAAATTGG+GGG - chr7_1:80082723-80082742 Msa1042260:intron 30.0%
ATTCTGAGTTTCAAAATAGG+GGG - chr7_1:80082752-80082771 Msa1042260:intron 30.0%
! CCCCTCAATTTAATGTTTTT+CGG + chr7_1:80082798-80082817 None:intergenic 30.0%
CCGAAAAACATTAAATTGAG+GGG - chr7_1:80082795-80082814 Msa1042260:intron 30.0%
CGAAAAACATTAAATTGAGG+GGG - chr7_1:80082796-80082815 Msa1042260:intron 30.0%
!!! ATTCCGAGTTTTAAAATAGG+GGG - chr7_1:80082823-80082842 Msa1042260:intron 30.0%
AGAAACAAGCATAGTAAACA+CGG - chr7_1:80083171-80083190 Msa1042260:intron 30.0%
!!! GTATGGGTGTTTTATTTTGA+GGG + chr7_1:80083239-80083258 None:intergenic 30.0%
!!! TTTGCCTTATGTTGGTTTTT+GGG + chr7_1:80083368-80083387 None:intergenic 30.0%
!!! ATTTGCCTTATGTTGGTTTT+TGG + chr7_1:80083369-80083388 None:intergenic 30.0%
CTAAATTTGGTACTATAGTC+TGG + chr7_1:80083430-80083449 None:intergenic 30.0%
ACTATAGTACCAAATTTAGC+AGG - chr7_1:80083431-80083450 Msa1042260:intron 30.0%
CTATAGTACCAAATTTAGCA+GGG - chr7_1:80083432-80083451 Msa1042260:intron 30.0%
AAAAAAATAGTCTGGTGTAC+CGG + chr7_1:80083470-80083489 None:intergenic 30.0%
! AATGAGCACACAAATGTTTT+AGG - chr7_1:80083807-80083826 Msa1042260:intron 30.0%
AATCAAACTCCTTATGCTTT+AGG - chr7_1:80083948-80083967 Msa1042260:intron 30.0%
ATCAAACTCCTTATGCTTTA+GGG - chr7_1:80083949-80083968 Msa1042260:intron 30.0%
AGTAGATTTGAGCTATTGTT+TGG - chr7_1:80084053-80084072 Msa1042260:intron 30.0%
!!! AGAACCATATAGTTGCTTTT+TGG - chr7_1:80084530-80084549 Msa1042260:intron 30.0%
AAATAAGCAAGAGAGAAAGA+GGG + chr7_1:80084848-80084867 None:intergenic 30.0%
GGATCTTAGCCAATTTATAA+TGG - chr7_1:80084944-80084963 Msa1042260:intron 30.0%
TCAACAAAGTTGTCATCAAA+TGG + chr7_1:80084989-80085008 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG - chr7_1:80085040-80085059 Msa1042260:intron 30.0%
CAACAAACTAATCAACCAAT+GGG + chr7_1:80085696-80085715 None:intergenic 30.0%
ACAGGTTACATGTCAAATTT+AGG - chr7_1:80085831-80085850 Msa1042260:CDS 30.0%
AAGAGACTATTATTGTGAGA+CGG + chr7_1:80085892-80085911 None:intergenic 30.0%
CCCTTATTAATTGTAGTTAG+TGG + chr7_1:80086029-80086048 None:intergenic 30.0%
! CTCGAAATTATTGTCGTTTA+AGG + chr7_1:80086126-80086145 None:intergenic 30.0%
AAACGACAATAATTTCGAGA+CGG - chr7_1:80086127-80086146 Msa1042260:CDS 30.0%
TATTGAAGTGAAGTGTGAAT+AGG + chr7_1:80086164-80086183 None:intergenic 30.0%
CGTGAAATAATGAGAAAAAG+TGG + chr7_1:80086189-80086208 None:intergenic 30.0%
ATCAATGGCTAACATTCAAT+GGG + chr7_1:80086299-80086318 None:intergenic 30.0%
AATCAATGGCTAACATTCAA+TGG + chr7_1:80086300-80086319 None:intergenic 30.0%
!!! TTTTTTTTTTGGCAGAATGC+TGG - chr7_1:80086434-80086453 Msa1042260:five_prime_UTR 30.0%
!!! TTTTTTTTTGGCAGAATGCT+GGG - chr7_1:80086435-80086454 Msa1042260:five_prime_UTR 30.0%
GCATATATATCGCTGTTCTT+TGG - chr7_1:80079931-80079950 Msa1042260:intron 35.0%
AATTTACTACCTCGTAAAGG+GGG + chr7_1:80079979-80079998 None:intergenic 35.0%
!! GACGCATATAGTTCTAACTT+TGG + chr7_1:80080152-80080171 None:intergenic 35.0%
!!! TCTTAGGGAGCACTTTATTT+TGG - chr7_1:80080197-80080216 Msa1042260:intron 35.0%
TGCGTTAATGGAAATTGGTT+GGG + chr7_1:80080275-80080294 None:intergenic 35.0%
TTGCGTTAATGGAAATTGGT+TGG + chr7_1:80080276-80080295 None:intergenic 35.0%
TGGAGGATTTCATCCAAATT+TGG - chr7_1:80080303-80080322 Msa1042260:intron 35.0%
AAGGCGGAAATTCATAACTA+AGG + chr7_1:80080598-80080617 None:intergenic 35.0%
!!! GCAAAGCAGAGCAATTTTTT+TGG - chr7_1:80080759-80080778 Msa1042260:intron 35.0%
!! TCTTTGGCTTGAAAGTAACA+TGG - chr7_1:80080956-80080975 Msa1042260:intron 35.0%
TTGCGTAGAAAGGATATACA+GGG - chr7_1:80081094-80081113 Msa1042260:intron 35.0%
AGAATAAAAAGGGGCTTCAT+AGG + chr7_1:80081134-80081153 None:intergenic 35.0%
! TGTTACTCTTCGAAAGCATA+TGG - chr7_1:80081236-80081255 Msa1042260:intron 35.0%
CTGTCAGACAGTTGAATATT+AGG + chr7_1:80081457-80081476 None:intergenic 35.0%
!!! TTTTTTAGGCCCATAGCTTT+TGG + chr7_1:80081528-80081547 None:intergenic 35.0%
TATTTATTTAAGTGGGGGGT+GGG + chr7_1:80081565-80081584 None:intergenic 35.0%
TTATTTATTTAAGTGGGGGG+TGG + chr7_1:80081566-80081585 None:intergenic 35.0%
! TAGACTCAAGTTCTCCTTTT+TGG - chr7_1:80081637-80081656 Msa1042260:intron 35.0%
CTTATTCAACCAAAATAGGG+GGG + chr7_1:80081834-80081853 None:intergenic 35.0%
!!! TACTCCCCTATTTTGAAACT+CGG - chr7_1:80081919-80081938 Msa1042260:intron 35.0%
CGAAAAACATTAAATTGCGG+GGG + chr7_1:80081952-80081971 None:intergenic 35.0%
CCGAAAAACATTAAATTGCG+GGG + chr7_1:80081953-80081972 None:intergenic 35.0%
! CCCCGCAATTTAATGTTTTT+CGG - chr7_1:80081950-80081969 Msa1042260:intron 35.0%
AATAACATCAAATGTGGTGG+GGG + chr7_1:80082693-80082712 None:intergenic 35.0%
AATAACATCAAATGTGGTGG+GGG - chr7_1:80082693-80082712 Msa1042260:intron 35.0%
! CCCCCCAATTTAATGTTTTT+CGG + chr7_1:80082727-80082746 None:intergenic 35.0%
CCGAAAAACATTAAATTGGG+GGG - chr7_1:80082724-80082743 Msa1042260:intron 35.0%
TTCTGAGTTTCAAAATAGGG+GGG - chr7_1:80082753-80082772 Msa1042260:intron 35.0%
!!! TTCCGAGTTTTAAAATAGGG+GGG - chr7_1:80082824-80082843 Msa1042260:intron 35.0%
!!! TACCCCCCTATTTTAAAACT+CGG + chr7_1:80082829-80082848 None:intergenic 35.0%
AATTCCGATTCAGCCAAAAT+AGG - chr7_1:80082850-80082869 Msa1042260:intron 35.0%
ATTCCGATTCAGCCAAAATA+GGG - chr7_1:80082851-80082870 Msa1042260:intron 35.0%
! ATAAGAGAAGTGTACTACAG+TGG + chr7_1:80082910-80082929 None:intergenic 35.0%
TGGACGAAACAAGATACAAA+TGG - chr7_1:80083059-80083078 Msa1042260:intron 35.0%
TATGGTGTACTGTCTATATG+CGG + chr7_1:80083087-80083106 None:intergenic 35.0%
!! GTTTCTTTAGAGTTTGCTCT+AGG + chr7_1:80083157-80083176 None:intergenic 35.0%
!!! GGTATGGGTGTTTTATTTTG+AGG + chr7_1:80083240-80083259 None:intergenic 35.0%
AAAGCCCAAAAACCAACATA+AGG - chr7_1:80083361-80083380 Msa1042260:intron 35.0%
!! ATCACTTTTGATTCGAGATC+GGG + chr7_1:80083400-80083419 None:intergenic 35.0%
!! GATCACTTTTGATTCGAGAT+CGG + chr7_1:80083401-80083420 None:intergenic 35.0%
GATCTCGAATCAAAAGTGAT+CGG - chr7_1:80083400-80083419 Msa1042260:intron 35.0%
ATTTGGTACTATAGTCTGGT+GGG + chr7_1:80083426-80083445 None:intergenic 35.0%
AATTTGGTACTATAGTCTGG+TGG + chr7_1:80083427-80083446 None:intergenic 35.0%
AAAAAATAGTCTGGTGTACC+GGG + chr7_1:80083469-80083488 None:intergenic 35.0%
AACTAAACACACCAATAGTC+TGG + chr7_1:80083514-80083533 None:intergenic 35.0%
! GGAGAGACATGTATTTTCTT+TGG + chr7_1:80083595-80083614 None:intergenic 35.0%
AGTGTAAGCTCTATGGATAT+TGG + chr7_1:80083616-80083635 None:intergenic 35.0%
! GTGAGTTTAGCTCAATTGAT+AGG - chr7_1:80083719-80083738 Msa1042260:intron 35.0%
TGTGTGCTCATTTGTTTATG+TGG + chr7_1:80083799-80083818 None:intergenic 35.0%
! CATGCATGTTGATTGTCAAA+TGG - chr7_1:80083838-80083857 Msa1042260:intron 35.0%
AAGTCTCTAAGCAGTAACAA+CGG - chr7_1:80083864-80083883 Msa1042260:intron 35.0%
CAAACATACCCTAAAGCATA+AGG + chr7_1:80083960-80083979 None:intergenic 35.0%
!! CTTATGCTTTAGGGTATGTT+TGG - chr7_1:80083958-80083977 Msa1042260:intron 35.0%
!!! CAACTTGCTTTTTTTTCGAC+CGG - chr7_1:80084562-80084581 Msa1042260:intron 35.0%
!!! TTTTTTGTTGTTGCTGAAGC+CGG + chr7_1:80084584-80084603 None:intergenic 35.0%
TATATAACCAGGGAGAATAG+TGG - chr7_1:80084663-80084682 Msa1042260:intron 35.0%
! TTATTTTCCACTATTCTCCC+TGG + chr7_1:80084673-80084692 None:intergenic 35.0%
AATAAGCAAGAGAGAAAGAG+GGG + chr7_1:80084847-80084866 None:intergenic 35.0%
GAAATAAGCAAGAGAGAAAG+AGG + chr7_1:80084849-80084868 None:intergenic 35.0%
AGAGTGCATAACACTATGTT+TGG + chr7_1:80084879-80084898 None:intergenic 35.0%
AGAGAGAAAAAGGAAGAAAG+AGG - chr7_1:80085050-80085069 Msa1042260:intron 35.0%
CCAACAAACTAATCAACCAA+TGG + chr7_1:80085697-80085716 None:intergenic 35.0%
!! CCATTGGTTGATTAGTTTGT+TGG - chr7_1:80085694-80085713 Msa1042260:intron 35.0%
AGGCTCAGACTTAAAATAAC+AGG - chr7_1:80085813-80085832 Msa1042260:CDS 35.0%
AGGTTTGTGCATGGTTATTA+AGG + chr7_1:80086106-80086125 None:intergenic 35.0%
AATTTGCACCACTAGAACTT+TGG - chr7_1:80086261-80086280 Msa1042260:CDS 35.0%
ATTTGCACCACTAGAACTTT+GGG - chr7_1:80086262-80086281 Msa1042260:CDS 35.0%
! GGTGGATAGTTAGTTTATGG+AGG - chr7_1:80079383-80079402 Msa1042260:intron 40.0%
TGGAGGAAATTAGCGTAGTT+TGG - chr7_1:80079400-80079419 Msa1042260:intron 40.0%
GGAGGAAATTAGCGTAGTTT+GGG - chr7_1:80079401-80079420 Msa1042260:intron 40.0%
GAGGAAATTAGCGTAGTTTG+GGG - chr7_1:80079402-80079421 Msa1042260:intron 40.0%
AGGAAATTAGCGTAGTTTGG+GGG - chr7_1:80079403-80079422 Msa1042260:intron 40.0%
GATCGAAACAACGCAAAACT+TGG - chr7_1:80079476-80079495 Msa1042260:intron 40.0%
ATGGATGGAATGGAATGGAA+TGG + chr7_1:80079535-80079554 None:intergenic 40.0%
ATTCCATTCCATTCCATCCA+TGG - chr7_1:80079534-80079553 Msa1042260:intron 40.0%
ATTCCAATTGACAGTGATGG+AGG + chr7_1:80079885-80079904 None:intergenic 40.0%
CAGATTCCAATTGACAGTGA+TGG + chr7_1:80079888-80079907 None:intergenic 40.0%
!!! ATGTGAGGATTGGTTTTCTG+AGG - chr7_1:80080241-80080260 Msa1042260:intron 40.0%
CGGAGGCAAATTTCCAAATT+TGG + chr7_1:80080319-80080338 None:intergenic 40.0%
TGCACAATTATGCTTGTCTG+TGG - chr7_1:80080646-80080665 Msa1042260:intron 40.0%
ACCTGTCAACAGTCAAATGA+GGG + chr7_1:80080824-80080843 None:intergenic 40.0%
AACCTGTCAACAGTCAAATG+AGG + chr7_1:80080825-80080844 None:intergenic 40.0%
TCTCTGATGCACTTCTTCTT+TGG - chr7_1:80080940-80080959 Msa1042260:intron 40.0%
ACATGGAAAATTTGGAGACG+CGG - chr7_1:80080973-80080992 Msa1042260:intron 40.0%
CGCAAGATTCAGCTAAACAA+TGG + chr7_1:80081079-80081098 None:intergenic 40.0%
TAGCTGAATCTTGCGTAGAA+AGG - chr7_1:80081084-80081103 Msa1042260:intron 40.0%
CTTGCGTAGAAAGGATATAC+AGG - chr7_1:80081093-80081112 Msa1042260:intron 40.0%
AAAAAGGGGCTTCATAGGAT+AGG + chr7_1:80081129-80081148 None:intergenic 40.0%
CTCTTGCATCTCTAAACAAC+AGG - chr7_1:80081152-80081171 Msa1042260:intron 40.0%
GTTAGGTTTCGGTAATATGG+TGG + chr7_1:80081186-80081205 None:intergenic 40.0%
GCAGTTAGGTTTCGGTAATA+TGG + chr7_1:80081189-80081208 None:intergenic 40.0%
TATTCAACTGTCTGACAGTC+AGG - chr7_1:80081459-80081478 Msa1042260:intron 40.0%
! ATAACATCAAATGTGGTGGG+GGG - chr7_1:80082694-80082713 Msa1042260:intron 40.0%
TCTGAGTTTCAAAATAGGGG+GGG - chr7_1:80082754-80082773 Msa1042260:intron 40.0%
TTCCGATTCAGCCAAAATAG+GGG - chr7_1:80082852-80082871 Msa1042260:intron 40.0%
! TTTATCTCCAGGGGGTTTTT+AGG + chr7_1:80083114-80083133 None:intergenic 40.0%
!! TTATGGTGGGTTTATCTCCA+GGG + chr7_1:80083124-80083143 None:intergenic 40.0%
!! TCTTTAGAGTTTGCTCTAGG+TGG + chr7_1:80083154-80083173 None:intergenic 40.0%
GTCATAGTTGCATGATCCTT+CGG + chr7_1:80083302-80083321 None:intergenic 40.0%
GTCAGCTATTTGCCTTATGT+TGG + chr7_1:80083376-80083395 None:intergenic 40.0%
AAAAATAGTCTGGTGTACCG+GGG + chr7_1:80083468-80083487 None:intergenic 40.0%
CAGTTGAAGTGTAAGCTCTA+TGG + chr7_1:80083623-80083642 None:intergenic 40.0%
AGAGCTTACACTTCAACTGT+TGG - chr7_1:80083624-80083643 Msa1042260:intron 40.0%
GAGCTTACACTTCAACTGTT+GGG - chr7_1:80083625-80083644 Msa1042260:intron 40.0%
ACTCACGAAGACTGTTTATG+TGG + chr7_1:80083705-80083724 None:intergenic 40.0%
AGCAGTAACAACGGTAATTC+TGG - chr7_1:80083873-80083892 Msa1042260:intron 40.0%
!! AAAAAGCACTTACTGGCTTG+TGG - chr7_1:80083917-80083936 Msa1042260:intron 40.0%
! GAAAGTGTGAAGAGAGAAAG+AGG - chr7_1:80083990-80084009 Msa1042260:intron 40.0%
!! CCTTTTTCACTTCTCTCCAT+AGG + chr7_1:80084737-80084756 None:intergenic 40.0%
CCTATGGAGAGAAGTGAAAA+AGG - chr7_1:80084734-80084753 Msa1042260:intron 40.0%
! GAGAGAAGTGAAAAAGGTGT+GGG - chr7_1:80084740-80084759 Msa1042260:intron 40.0%
!! GATGGGCTATTTCTCATGTT+TGG + chr7_1:80084806-80084825 None:intergenic 40.0%
TGTCATATGTCTTGTCAGCA+TGG - chr7_1:80085284-80085303 Msa1042260:intron 40.0%
GACTATTATTGTGAGACGGA+GGG + chr7_1:80085888-80085907 None:intergenic 40.0%
AGACTATTATTGTGAGACGG+AGG + chr7_1:80085889-80085908 None:intergenic 40.0%
! TGTCGTTTAAGGTTTGTGCA+TGG + chr7_1:80086115-80086134 None:intergenic 40.0%
GACAATAATTTCGAGACGGA+GGG - chr7_1:80086131-80086150 Msa1042260:CDS 40.0%
TTCACGGCAAGTGAAATTTG+TGG - chr7_1:80086203-80086222 Msa1042260:CDS 40.0%
AACATTCAATGGGTCCAAGT+TGG + chr7_1:80086289-80086308 None:intergenic 40.0%
AGTCCAGTGGTGTAGATTAA+AGG - chr7_1:80086332-80086351 Msa1042260:CDS 40.0%
CTACCTTTAATCTACACCAC+TGG + chr7_1:80086338-80086357 None:intergenic 40.0%
CAGTGGTGTAGATTAAAGGT+AGG - chr7_1:80086336-80086355 Msa1042260:CDS 40.0%
GAGGAATCAACTTGCATCTT+TGG + chr7_1:80086365-80086384 None:intergenic 40.0%
! TTGCGTTGTTTCGATCGATC+TGG + chr7_1:80079472-80079491 None:intergenic 45.0%
TGAAACCTCCATGGATGGAA+TGG + chr7_1:80079545-80079564 None:intergenic 45.0%
CACCACTCTTTGTATTTCCG+AGG - chr7_1:80079736-80079755 Msa1042260:intron 45.0%
TTGCTCTCTATGTCGCTCTT+AGG - chr7_1:80080181-80080200 Msa1042260:intron 45.0%
TGCTCTCTATGTCGCTCTTA+GGG - chr7_1:80080182-80080201 Msa1042260:intron 45.0%
!!! GGGAGCACTTTATTTTGGAG+TGG - chr7_1:80080202-80080221 Msa1042260:intron 45.0%
TGGAAATTTGCCTCCGATCA+TGG - chr7_1:80080323-80080342 Msa1042260:intron 45.0%
TGTGTATGTACCATGATCGG+AGG + chr7_1:80080336-80080355 None:intergenic 45.0%
!! TATGTATCGGCTACCTAGCA+AGG - chr7_1:80080508-80080527 Msa1042260:intron 45.0%
ACCCTCATTTGACTGTTGAC+AGG - chr7_1:80080820-80080839 Msa1042260:intron 45.0%
GAAGCAGAAGACAACTGCAA+TGG - chr7_1:80080999-80081018 Msa1042260:intron 45.0%
CACTGATGGCAGTTAGGTTT+CGG + chr7_1:80081197-80081216 None:intergenic 45.0%
ACACATCACTGATGGCAGTT+AGG + chr7_1:80081203-80081222 None:intergenic 45.0%
! TCGAAAGCATATGGCACAGA+TGG - chr7_1:80081245-80081264 Msa1042260:intron 45.0%
! TTTAGGCCCATAGCTTTTGG+AGG + chr7_1:80081525-80081544 None:intergenic 45.0%
! GCAATTTTGCCCCCCTATTT+TGG - chr7_1:80081822-80081841 Msa1042260:intron 45.0%
CTGAGTTTCAAAATAGGGGG+GGG - chr7_1:80082755-80082774 Msa1042260:intron 45.0%
TGAGTTTCAAAATAGGGGGG+GGG - chr7_1:80082756-80082775 Msa1042260:intron 45.0%
TCCGATTCAGCCAAAATAGG+GGG - chr7_1:80082853-80082872 Msa1042260:intron 45.0%
! GCAATTTTGCCCCCCTATTT+TGG + chr7_1:80081822-80081841 None:intergenic 45.0%
!!! AGGGGGTTTTTAGGTGGTTA+TGG + chr7_1:80083105-80083124 None:intergenic 45.0%
ATAACCACCTAAAAACCCCC+TGG - chr7_1:80083104-80083123 Msa1042260:intron 45.0%
!! TATGGTGGGTTTATCTCCAG+GGG + chr7_1:80083123-80083142 None:intergenic 45.0%
!! GTTATGGTGGGTTTATCTCC+AGG + chr7_1:80083125-80083144 None:intergenic 45.0%
! AGGTGGTGATGTGTTATGGT+GGG + chr7_1:80083137-80083156 None:intergenic 45.0%
! TAGGTGGTGATGTGTTATGG+TGG + chr7_1:80083138-80083157 None:intergenic 45.0%
! CTCTAGGTGGTGATGTGTTA+TGG + chr7_1:80083141-80083160 None:intergenic 45.0%
TTGTGTGTGAGTAGTGACGA+TGG + chr7_1:80083210-80083229 None:intergenic 45.0%
AGTTGCATGATCCTTCGGTT+AGG + chr7_1:80083297-80083316 None:intergenic 45.0%
TTTGTGTTGTGCTCTTTCGG+TGG + chr7_1:80083344-80083363 None:intergenic 45.0%
! GGCTTTGTGTTGTGCTCTTT+CGG + chr7_1:80083347-80083366 None:intergenic 45.0%
AAAATAGTCTGGTGTACCGG+GGG + chr7_1:80083467-80083486 None:intergenic 45.0%
ACACCAATAGTCTGGTGTAC+CGG + chr7_1:80083506-80083525 None:intergenic 45.0%
CTGGAACTCATAGCAATCGA+CGG - chr7_1:80083892-80083911 Msa1042260:intron 45.0%
TGGAACTCATAGCAATCGAC+GGG - chr7_1:80083893-80083912 Msa1042260:intron 45.0%
!! GACGGGTAAAAAGCACTTAC+TGG - chr7_1:80083910-80083929 Msa1042260:intron 45.0%
TTCTTCGCACCTAACACCTA+TGG - chr7_1:80084718-80084737 Msa1042260:intron 45.0%
CACTTCTCTCCATAGGTGTT+AGG + chr7_1:80084730-80084749 None:intergenic 45.0%
GGAGAGAAGTGAAAAAGGTG+TGG - chr7_1:80084739-80084758 Msa1042260:intron 45.0%
GAGAGAAGTTGGAGAGAGAT+GGG + chr7_1:80084823-80084842 None:intergenic 45.0%
AGAGAGAAGTTGGAGAGAGA+TGG + chr7_1:80084824-80084843 None:intergenic 45.0%
TTATGCACTCTTCAAGTGCG+TGG - chr7_1:80084888-80084907 Msa1042260:intron 45.0%
CGACAATAATTTCGAGACGG+AGG - chr7_1:80086130-80086149 Msa1042260:CDS 45.0%
! AGTTGGACCCAAAGTTCTAG+TGG + chr7_1:80086272-80086291 None:intergenic 45.0%
CTAGAACTTTGGGTCCAACT+TGG - chr7_1:80086272-80086291 Msa1042260:CDS 45.0%
ACTACATGTGAGCATGAGAG+AGG + chr7_1:80086384-80086403 None:intergenic 45.0%
CTCTCATGCTCACATGTAGT+TGG - chr7_1:80086384-80086403 Msa1042260:five_prime_UTR 45.0%
!! NNNNNNNNNNCATAAAATTA+AGG - chr7_1:80081792-80081811 Msa1042260:intron 5.0%
CCTCCATGGATGGAATGGAA+TGG + chr7_1:80079540-80079559 None:intergenic 50.0%
CCATTCCATTCCATCCATGG+AGG - chr7_1:80079537-80079556 Msa1042260:intron 50.0%
GAGAGTGAAACCTCCATGGA+TGG + chr7_1:80079550-80079569 None:intergenic 50.0%
GTCTGAGAGTGAAACCTCCA+TGG + chr7_1:80079554-80079573 None:intergenic 50.0%
TGGATGATGATCCGAGCTGT+TGG + chr7_1:80079602-80079621 None:intergenic 50.0%
AGTGGTGAATGAGCCTGTTG+CGG + chr7_1:80079723-80079742 None:intergenic 50.0%
GGCCTCGGAAATACAAAGAG+TGG + chr7_1:80079741-80079760 None:intergenic 50.0%
TATTTCCGAGGCCTTCTCAG+TGG - chr7_1:80079748-80079767 Msa1042260:intron 50.0%
ACCTGAAGCTTCCACTGAGA+AGG + chr7_1:80079762-80079781 None:intergenic 50.0%
! CCAATTGACAGTGATGGAGG+CGG + chr7_1:80079882-80079901 None:intergenic 50.0%
! AAGGGGGAGGACATTTTGAG+TGG + chr7_1:80079963-80079982 None:intergenic 50.0%
AAATGTCCTCCCCCTTTACG+AGG - chr7_1:80079967-80079986 Msa1042260:intron 50.0%
TTACTACCTCGTAAAGGGGG+AGG + chr7_1:80079976-80079995 None:intergenic 50.0%
GAGTTTCAAAATAGGGGGGG+GGG - chr7_1:80082757-80082776 Msa1042260:intron 50.0%
AGTTTCAAAATAGGGGGGGG+GGG - chr7_1:80082758-80082777 Msa1042260:intron 50.0%
!!! CCCCCCTATTTTGGCTGAAT+CGG + chr7_1:80082857-80082876 None:intergenic 50.0%
CCGATTCAGCCAAAATAGGG+GGG - chr7_1:80082854-80082873 Msa1042260:intron 50.0%
!! ATCTCCAGGGGGTTTTTAGG+TGG + chr7_1:80083111-80083130 None:intergenic 50.0%
!! ATGGTGGGTTTATCTCCAGG+GGG + chr7_1:80083122-80083141 None:intergenic 50.0%
GTGTGAGTAGTGACGATGGA+CGG + chr7_1:80083206-80083225 None:intergenic 50.0%
GTTAGGTGCTCTTCGTTACG+TGG + chr7_1:80083280-80083299 None:intergenic 50.0%
!! AACGAAGAGCACCTAACCGA+AGG - chr7_1:80083283-80083302 Msa1042260:intron 50.0%
GTTGTGCTCTTTCGGTGGAT+CGG + chr7_1:80083339-80083358 None:intergenic 50.0%
GATGGGTGCCCTGCTAAATT+TGG + chr7_1:80083443-80083462 None:intergenic 50.0%
GGTGCGAAGAAACAGAGTGA+AGG + chr7_1:80084709-80084728 None:intergenic 50.0%
AGCAGAGATACAGACGACGT+GGG + chr7_1:80084767-80084786 None:intergenic 50.0%
GAAAGAGGGGAGAGAGAAGT+TGG + chr7_1:80084834-80084853 None:intergenic 50.0%
!! GACGGAGGGAGTACTAAACT+AGG + chr7_1:80085874-80085893 None:intergenic 50.0%
TCGATCTGGCGCATGGATAC+CGG + chr7_1:80079458-80079477 None:intergenic 55.0%
GTTTCGATCGATCTGGCGCA+TGG + chr7_1:80079465-80079484 None:intergenic 55.0%
AGCTGTTGGTGCAAACGAGG+AGG + chr7_1:80079588-80079607 None:intergenic 55.0%
CCTCGTTTGCACCAACAGCT+CGG - chr7_1:80079588-80079607 Msa1042260:intron 55.0%
AACTTCACGCACACCGCAAC+AGG - chr7_1:80079707-80079726 Msa1042260:intron 55.0%
AGCTTCCACTGAGAAGGCCT+CGG + chr7_1:80079756-80079775 None:intergenic 55.0%
GCCTTCTCAGTGGAAGCTTC+AGG - chr7_1:80079758-80079777 Msa1042260:intron 55.0%
CCGCCTCCATCACTGTCAAT+TGG - chr7_1:80079879-80079898 Msa1042260:intron 55.0%
AACTGTCTGACAGTCAGGCC+TGG - chr7_1:80081464-80081483 Msa1042260:intron 55.0%
! TGCAAGGTGCTCAACCAAGC+CGG - chr7_1:80081498-80081517 Msa1042260:intron 55.0%
GTTTCAAAATAGGGGGGGGG+GGG - chr7_1:80082759-80082778 Msa1042260:intron 55.0%
TTTCAAAATAGGGGGGGGGG+GGG - chr7_1:80082760-80082779 Msa1042260:intron 55.0%
TCCATACCTTGCGTCTTGCG+GGG + chr7_1:80083043-80083062 None:intergenic 55.0%
GTCCATACCTTGCGTCTTGC+GGG + chr7_1:80083044-80083063 None:intergenic 55.0%
CGTCCATACCTTGCGTCTTG+CGG + chr7_1:80083045-80083064 None:intergenic 55.0%
TGAGTAGTGACGATGGACGG+TGG + chr7_1:80083203-80083222 None:intergenic 55.0%
! TTCGTTACGTGGCTCGGCTT+CGG + chr7_1:80083269-80083288 None:intergenic 55.0%
GTGCTCTTCGTTACGTGGCT+CGG + chr7_1:80083275-80083294 None:intergenic 55.0%
GAGCCGGTACACCAGACTAT+TGG - chr7_1:80083500-80083519 Msa1042260:intron 55.0%
GAGCAGAGATACAGACGACG+TGG + chr7_1:80084768-80084787 None:intergenic 55.0%
CCGAGCTGTTGGTGCAAACG+AGG + chr7_1:80079591-80079610 None:intergenic 60.0%
! TGACAGTCAGGCCTGGCCTT+GGG - chr7_1:80081471-80081490 Msa1042260:intron 60.0%
! GCAAGGTGCTCAACCAAGCC+GGG - chr7_1:80081499-80081518 Msa1042260:intron 60.0%
!! TAGCTTTTGGAGGCCCGGCT+TGG + chr7_1:80081515-80081534 None:intergenic 60.0%
AGCCGGGCCTCCAAAAGCTA+TGG - chr7_1:80081515-80081534 Msa1042260:intron 60.0%
GCCGGGCCTCCAAAAGCTAT+GGG - chr7_1:80081516-80081535 Msa1042260:intron 60.0%
!! GCCCATAGCTTTTGGAGGCC+CGG + chr7_1:80081520-80081539 None:intergenic 60.0%
TTCAAAATAGGGGGGGGGGG+GGG - chr7_1:80082761-80082780 Msa1042260:intron 60.0%
TACCTTGCGTCTTGCGGGGA+TGG + chr7_1:80083039-80083058 None:intergenic 60.0%
TCCCCGCAAGACGCAAGGTA+TGG - chr7_1:80083039-80083058 Msa1042260:intron 60.0%
GTGCTCTTTCGGTGGATCGG+AGG + chr7_1:80083336-80083355 None:intergenic 60.0%
CTGACAGTCAGGCCTGGCCT+TGG - chr7_1:80081470-80081489 Msa1042260:intron 65.0%
!! GACAGTCAGGCCTGGCCTTG+GGG - chr7_1:80081472-80081491 Msa1042260:intron 65.0%
!! ACAGTCAGGCCTGGCCTTGG+GGG - chr7_1:80081473-80081492 Msa1042260:intron 65.0%
GAGCACCTTGCACTCCCCCA+AGG + chr7_1:80081490-80081509 None:intergenic 65.0%
TCAAAATAGGGGGGGGGGGG+GGG - chr7_1:80082762-80082781 Msa1042260:intron 65.0%
! CGGCTTCGGCGTTGGGGTAT+GGG + chr7_1:80083255-80083274 None:intergenic 65.0%
! TCGGCTTCGGCGTTGGGGTA+TGG + chr7_1:80083256-80083275 None:intergenic 65.0%
TCGGTGGATCGGAGGTCGAG+AGG + chr7_1:80083328-80083347 None:intergenic 65.0%
TCTGGTGTACCGGGGGCGAT+GGG + chr7_1:80083460-80083479 None:intergenic 65.0%
CCTTGCACTCCCCCAAGGCC+AGG + chr7_1:80081485-80081504 None:intergenic 70.0%
!! CCTGGCCTTGGGGGAGTGCA+AGG - chr7_1:80081482-80081501 Msa1042260:intron 70.0%
CAAAATAGGGGGGGGGGGGG+GGG - chr7_1:80082763-80082782 Msa1042260:intron 70.0%
AAAATAGGGGGGGGGGGGGG+GGG - chr7_1:80082764-80082783 Msa1042260:intron 70.0%
CGCCATCCCCGCAAGACGCA+AGG - chr7_1:80083034-80083053 Msa1042260:intron 70.0%
! GTGGCTCGGCTTCGGCGTTG+GGG + chr7_1:80083261-80083280 None:intergenic 70.0%
! CGTGGCTCGGCTTCGGCGTT+GGG + chr7_1:80083262-80083281 None:intergenic 70.0%
! ACGTGGCTCGGCTTCGGCGT+TGG + chr7_1:80083263-80083282 None:intergenic 70.0%
GTCTGGTGTACCGGGGGCGA+TGG + chr7_1:80083461-80083480 None:intergenic 70.0%
AAATAGGGGGGGGGGGGGGG+GGG - chr7_1:80082765-80082784 Msa1042260:intron 75.0%
! AGCAGGGCACCCATCGCCCC+CGG - chr7_1:80083448-80083467 Msa1042260:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 80079329 80086466 80079329 ID=Msa1042260;Name=Msa1042260
chr7_1 mRNA 80079329 80086466 80079329 ID=Msa1042260-mRNA-1;Parent=Msa1042260;Name=Msa1042260-mRNA-1;_AED=0.15;_eAED=0.15;_QI=107|0.4|0.33|0.66|1|1|6|0|245
chr7_1 exon 80079329 80079346 80079329 ID=Msa1042260-mRNA-1:exon:21725;Parent=Msa1042260-mRNA-1
chr7_1 exon 80084761 80084866 80084761 ID=Msa1042260-mRNA-1:exon:21724;Parent=Msa1042260-mRNA-1
chr7_1 exon 80084954 80085042 80084954 ID=Msa1042260-mRNA-1:exon:21723;Parent=Msa1042260-mRNA-1
chr7_1 exon 80085533 80085592 80085533 ID=Msa1042260-mRNA-1:exon:21722;Parent=Msa1042260-mRNA-1
chr7_1 exon 80085807 80085927 80085807 ID=Msa1042260-mRNA-1:exon:21721;Parent=Msa1042260-mRNA-1
chr7_1 exon 80086016 80086466 80086016 ID=Msa1042260-mRNA-1:exon:21720;Parent=Msa1042260-mRNA-1
chr7_1 five_prime_UTR 80086360 80086466 80086360 ID=Msa1042260-mRNA-1:five_prime_utr;Parent=Msa1042260-mRNA-1
chr7_1 CDS 80086016 80086359 80086016 ID=Msa1042260-mRNA-1:cds;Parent=Msa1042260-mRNA-1
chr7_1 CDS 80085807 80085927 80085807 ID=Msa1042260-mRNA-1:cds;Parent=Msa1042260-mRNA-1
chr7_1 CDS 80085533 80085592 80085533 ID=Msa1042260-mRNA-1:cds;Parent=Msa1042260-mRNA-1
chr7_1 CDS 80084954 80085042 80084954 ID=Msa1042260-mRNA-1:cds;Parent=Msa1042260-mRNA-1
chr7_1 CDS 80084761 80084866 80084761 ID=Msa1042260-mRNA-1:cds;Parent=Msa1042260-mRNA-1
chr7_1 CDS 80079329 80079346 80079329 ID=Msa1042260-mRNA-1:cds;Parent=Msa1042260-mRNA-1
Gene Sequence

>Msa1042260

ATGATAATTAAATTGAATACCGGTATCCATGCGCCAGATCGATCGAAACAACGCAAAACTTGGCAAACTAGCTCAGACTCTAGTAAAGCAAATAGTCCATTCCATTCCATTCCATCCATGGAGGTTTCACTCTCAGACGATCAACTTATCCTCCTCGTTTGCACCAACAGCTCGGATCATCATCCAATTGAAGAAGAGAATGAGATTCTTCTTTCAATCACCGATGTCATCGTTTCTGATTTATCAACATTTCTCAATTTTCACACAATCAAACTTCACGCACACCGCAACAGGCTCATTCACCACTCTTTGTATTTCCGAGGCCTTCTCAGTGGAAGCTTCAGTGAATCATGCTCCGCCTCCATCACTGTCAATTGGAATCTGCCTGTGTTTATGCAAATTCTTAAGCATATATATCGCTGTTCTTTGGATATTACCACTCAAAATGTCCTCCCCCTTTACGAGGGAGCACTTTATTTTGGAGTGGATACACTTATCGTAAAATGTGAGGATTGGTTTTCTGAGATGTGGGCAAAGCAGAGCAATTTTTTTGGAGAAGTTCCATATAACTTACTGTTATCTTCAGTAAAGCACCCTCATTTGACTGTTGACAGTGAGATGCATCTCTCTGATGCACTTCTTCTTTGGCTTGAAAGTAACATGGAAAATTTGGAGACGCGGAGCGAAGCAGAAGACAACTGCAATGGAATTTTAAAACAAAATGCTGGGTTTTGTTGA

Protein sequence

>Msa1042260

MIIKLNTGIHAPDRSKQRKTWQTSSDSSKANSPFHSIPSMEVSLSDDQLILLVCTNSSDHHPIEEENEILLSITDVIVSDLSTFLNFHTIKLHAHRNRLIHHSLYFRGLLSGSFSESCSASITVNWNLPVFMQILKHIYRCSLDITTQNVLPLYEGALYFGVDTLIVKCEDWFSEMWAKQSNFFGEVPYNLLLSSVKHPHLTVDSEMHLSDALLLWLESNMENLETRSEAEDNCNGILKQNAGFC*