AlfalfaGEDB | Msa1042260

M. sativa cultivar zhongmu-4 / Msa1042260

KEGG: K10268
GO: -
PFAM: PF00651.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1042260	KEH24131.1	69.291	254	19	4	40	240	1	248	4.63e-104	328

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1042260	sp\|Q8S8F2\|FBL11_ARATH	37.073	205	85	2	80	240	42	246	3.97e-35	135

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1042260	A0A072U435	69.291	254	19	4	40	240	1	248	2.21e-104	328

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TFs/TRs:

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Gene ID	Type	Classification
Msa1042260	TR	TRAF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1042260	MtrunA17_Chr7g0266021	69.291	254	19	4	40	240	1	248	1.59e-106	329

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1042260	AT2G36370.1	37.073	205	85	2	80	240	42	246	4.03e-36	135

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Find 56 sgRNAs with CRISPR-Local

Find 454 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTGTCAACAGTCAAATG+AGG	0.536573	7_1:+80084951	None:intergenic
AACTTCACGCACACCGCAAC+AGG	0.416021	7_1:-80086066	Msa1042260:CDS
AATTTACTACCTCGTAAAGG+GGG	0.664518	7_1:+80085797	None:intergenic
ACATGGAAAATTTGGAGACG+CGG	0.672233	7_1:-80084800	Msa1042260:CDS
ACCCTCATTTGACTGTTGAC+AGG	0.512484	7_1:-80084953	Msa1042260:intron
ACCTGAAGCTTCCACTGAGA+AGG	0.577463	7_1:+80086014	None:intergenic
ACCTGTCAACAGTCAAATGA+GGG	0.617095	7_1:+80084952	None:intergenic
AGCTGTTGGTGCAAACGAGG+AGG	0.659131	7_1:+80086188	None:intergenic
AGCTTCCACTGAGAAGGCCT+CGG	0.487850	7_1:+80086020	None:intergenic
AGGAAATTAGCGTAGTTTGG+GGG	0.646303	7_1:-80086370	Msa1042260:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCTCATTCTCTTCTTCAAT+TGG	+	chr7_1:80079622-80079641	None:intergenic	30.0%
TAAATCAGAAACGATGACAT+CGG	+	chr7_1:80079659-80079678	None:intergenic	30.0%
TAATTTACTACCTCGTAAAG+GGG	+	chr7_1:80079980-80079999	None:intergenic	30.0%
AAATCAGAACACTACGTTAA+TGG	+	chr7_1:80080103-80080122	None:intergenic	30.0%
TACACTTATCGTAAAATGTG+AGG	-	chr7_1:80080226-80080245	Msa1042260:intron	30.0%
TTATCGTAAAATGTGAGGAT+TGG	-	chr7_1:80080231-80080250	Msa1042260:intron	30.0%
GTATTTGCGTTAATGGAAAT+TGG	+	chr7_1:80080280-80080299	None:intergenic	30.0%
TCCATTAACGCAAATACAAA+TGG	-	chr7_1:80080283-80080302	Msa1042260:intron	30.0%
TCCATTTGTATTTGCGTTAA+TGG	+	chr7_1:80080287-80080306	None:intergenic	30.0%
ATTAACGCAAATACAAATGG+AGG	-	chr7_1:80080286-80080305	Msa1042260:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	80079329	80086466	80079329	ID=Msa1042260;Name=Msa1042260
chr7_1	mRNA	80079329	80086466	80079329	ID=Msa1042260-mRNA-1;Parent=Msa1042260;Name=Msa1042260-mRNA-1;_AED=0.15;_eAED=0.15;_QI=107\|0.4\|0.33\|0.66\|1\|1\|6\|0\|245
chr7_1	exon	80079329	80079346	80079329	ID=Msa1042260-mRNA-1:exon:21725;Parent=Msa1042260-mRNA-1
chr7_1	exon	80084761	80084866	80084761	ID=Msa1042260-mRNA-1:exon:21724;Parent=Msa1042260-mRNA-1
chr7_1	exon	80084954	80085042	80084954	ID=Msa1042260-mRNA-1:exon:21723;Parent=Msa1042260-mRNA-1
chr7_1	exon	80085533	80085592	80085533	ID=Msa1042260-mRNA-1:exon:21722;Parent=Msa1042260-mRNA-1
chr7_1	exon	80085807	80085927	80085807	ID=Msa1042260-mRNA-1:exon:21721;Parent=Msa1042260-mRNA-1
chr7_1	exon	80086016	80086466	80086016	ID=Msa1042260-mRNA-1:exon:21720;Parent=Msa1042260-mRNA-1
chr7_1	five_prime_UTR	80086360	80086466	80086360	ID=Msa1042260-mRNA-1:five_prime_utr;Parent=Msa1042260-mRNA-1
chr7_1	CDS	80086016	80086359	80086016	ID=Msa1042260-mRNA-1:cds;Parent=Msa1042260-mRNA-1
chr7_1	CDS	80085807	80085927	80085807	ID=Msa1042260-mRNA-1:cds;Parent=Msa1042260-mRNA-1
chr7_1	CDS	80085533	80085592	80085533	ID=Msa1042260-mRNA-1:cds;Parent=Msa1042260-mRNA-1
chr7_1	CDS	80084954	80085042	80084954	ID=Msa1042260-mRNA-1:cds;Parent=Msa1042260-mRNA-1
chr7_1	CDS	80084761	80084866	80084761	ID=Msa1042260-mRNA-1:cds;Parent=Msa1042260-mRNA-1
chr7_1	CDS	80079329	80079346	80079329	ID=Msa1042260-mRNA-1:cds;Parent=Msa1042260-mRNA-1

Gene Sequence

>Msa1042260

ATGATAATTAAATTGAATACCGGTATCCATGCGCCAGATCGATCGAAACAACGCAAAACTTGGCAAACTAGCTCAGACTCTAGTAAAGCAAATAGTCCATTCCATTCCATTCCATCCATGGAGGTTTCACTCTCAGACGATCAACTTATCCTCCTCGTTTGCACCAACAGCTCGGATCATCATCCAATTGAAGAAGAGAATGAGATTCTTCTTTCAATCACCGATGTCATCGTTTCTGATTTATCAACATTTCTCAATTTTCACACAATCAAACTTCACGCACACCGCAACAGGCTCATTCACCACTCTTTGTATTTCCGAGGCCTTCTCAGTGGAAGCTTCAGTGAATCATGCTCCGCCTCCATCACTGTCAATTGGAATCTGCCTGTGTTTATGCAAATTCTTAAGCATATATATCGCTGTTCTTTGGATATTACCACTCAAAATGTCCTCCCCCTTTACGAGGGAGCACTTTATTTTGGAGTGGATACACTTATCGTAAAATGTGAGGATTGGTTTTCTGAGATGTGGGCAAAGCAGAGCAATTTTTTTGGAGAAGTTCCATATAACTTACTGTTATCTTCAGTAAAGCACCCTCATTTGACTGTTGACAGTGAGATGCATCTCTCTGATGCACTTCTTCTTTGGCTTGAAAGTAACATGGAAAATTTGGAGACGCGGAGCGAAGCAGAAGACAACTGCAATGGAATTTTAAAACAAAATGCTGGGTTTTGTTGA

Protein sequence

>Msa1042260

MIIKLNTGIHAPDRSKQRKTWQTSSDSSKANSPFHSIPSMEVSLSDDQLILLVCTNSSDHHPIEEENEILLSITDVIVSDLSTFLNFHTIKLHAHRNRLIHHSLYFRGLLSGSFSESCSASITVNWNLPVFMQILKHIYRCSLDITTQNVLPLYEGALYFGVDTLIVKCEDWFSEMWAKQSNFFGEVPYNLLLSSVKHPHLTVDSEMHLSDALLLWLESNMENLETRSEAEDNCNGILKQNAGFC*