Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042410 | XP_003625472.1 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 2.30e-89 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042410 | sp|F4JZT3|ARR24_ARATH | 63.025 | 119 | 44 | 0 | 9 | 127 | 16 | 134 | 1.28e-47 | 152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042410 | G7KZK5 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 1.10e-89 | 265 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1042410 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042410 | MtrunA17_Chr8g0364781 | 67.442 | 129 | 39 | 2 | 1 | 126 | 1 | 129 | 9.38e-55 | 168 |
| Msa1042410 | MtrunA17_Chr7g0262671 | 94.805 | 77 | 4 | 0 | 1 | 77 | 1 | 77 | 1.93e-49 | 153 |
| Msa1042410 | MtrunA17_Chr7g0262351 | 59.200 | 125 | 50 | 1 | 5 | 129 | 16 | 139 | 7.51e-46 | 145 |
| Msa1042410 | MtrunA17_Chr7g0262681 | 93.548 | 62 | 4 | 0 | 69 | 130 | 5 | 66 | 7.57e-37 | 120 |
| Msa1042410 | MtrunA17_Chr6g0472261 | 54.054 | 74 | 34 | 0 | 4 | 77 | 3 | 76 | 1.11e-21 | 82.0 |
| Msa1042410 | MtrunA17_Chr6g0451941 | 34.211 | 114 | 75 | 0 | 11 | 124 | 33 | 146 | 2.47e-18 | 75.9 |
| Msa1042410 | MtrunA17_Chr8g0392301 | 27.820 | 133 | 79 | 1 | 14 | 129 | 864 | 996 | 1.38e-12 | 63.5 |
| Msa1042410 | MtrunA17_Chr5g0447641 | 41.791 | 67 | 39 | 0 | 14 | 80 | 1077 | 1143 | 1.22e-11 | 60.8 |
| Msa1042410 | MtrunA17_Chr8g0371601 | 30.597 | 134 | 72 | 3 | 11 | 123 | 1029 | 1162 | 1.74e-11 | 60.1 |
| Msa1042410 | MtrunA17_Chr5g0405701 | 30.000 | 150 | 74 | 4 | 11 | 129 | 1050 | 1199 | 7.46e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042410 | AT5G26594.1 | 63.025 | 119 | 44 | 0 | 9 | 127 | 16 | 134 | 1.30e-48 | 152 |
| Msa1042410 | AT3G04280.1 | 46.789 | 109 | 56 | 2 | 11 | 117 | 22 | 130 | 6.63e-26 | 95.1 |
| Msa1042410 | AT3G04280.2 | 46.789 | 109 | 56 | 2 | 11 | 117 | 22 | 130 | 6.63e-26 | 95.1 |
| Msa1042410 | AT3G04280.3 | 46.789 | 109 | 56 | 2 | 11 | 117 | 22 | 130 | 6.63e-26 | 95.1 |
| Msa1042410 | AT2G01830.5 | 30.657 | 137 | 82 | 2 | 2 | 125 | 922 | 1058 | 4.61e-13 | 65.1 |
| Msa1042410 | AT2G01830.2 | 30.657 | 137 | 82 | 2 | 2 | 125 | 933 | 1069 | 5.04e-13 | 65.1 |
| Msa1042410 | AT2G01830.1 | 30.657 | 137 | 82 | 2 | 2 | 125 | 910 | 1046 | 5.28e-13 | 65.1 |
| Msa1042410 | AT2G01830.4 | 30.657 | 137 | 82 | 2 | 2 | 125 | 910 | 1046 | 5.28e-13 | 65.1 |
| Msa1042410 | AT2G01830.6 | 30.657 | 137 | 82 | 2 | 2 | 125 | 910 | 1046 | 5.28e-13 | 65.1 |
| Msa1042410 | AT2G01830.3 | 30.657 | 137 | 82 | 2 | 2 | 125 | 910 | 1046 | 5.28e-13 | 65.1 |
| Msa1042410 | AT5G35750.1 | 28.889 | 135 | 74 | 2 | 14 | 126 | 1038 | 1172 | 1.63e-12 | 63.5 |
Find 31 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAAGATGTTGAATAAATT+TGG | 0.144966 | 7_1:+80394622 | Msa1042410:CDS |
| GCAATACTTAGTTCCATTCT+TGG | 0.228362 | 7_1:+80395973 | Msa1042410:CDS |
| TATCCATGTCCATGAGAATT+AGG | 0.311699 | 7_1:-80394714 | None:intergenic |
| TGGATTGATCTTGCCAAGAA+TGG | 0.418939 | 7_1:-80395986 | None:intergenic |
| CACAACCAGTGCTGTTAGCT+TGG | 0.421611 | 7_1:-80394569 | None:intergenic |
| AAAATTCATGGAAGCTGGAT+TGG | 0.421768 | 7_1:+80395921 | Msa1042410:CDS |
| TGGTGTGTCATCACGCTCTA+TGG | 0.423024 | 7_1:+80395885 | Msa1042410:CDS |
| AGATGAAATACTAAAATTCA+TGG | 0.428022 | 7_1:+80395909 | Msa1042410:CDS |
| ACTAAGTATTGCATTGTTCA+AGG | 0.440010 | 7_1:-80395962 | None:intergenic |
| AAGAAGCAGTGGACATTCAT+TGG | 0.445266 | 7_1:+80394674 | Msa1042410:CDS |
| ATACTAAAATTCATGGAAGC+TGG | 0.448559 | 7_1:+80395916 | Msa1042410:CDS |
| GGTATTTGTAGCACAATTGT+TGG | 0.475026 | 7_1:+80395865 | Msa1042410:CDS |
| AAAATTTGACCTAATTCTCA+TGG | 0.477878 | 7_1:+80394705 | Msa1042410:CDS |
| AAAAGTCAAGGTGTGGAGAA+TGG | 0.478580 | 7_1:+80394649 | Msa1042410:CDS |
| ACAAAGGAACTTCGTGCAAT+GGG | 0.482431 | 7_1:+80395844 | Msa1042410:CDS |
| CAAGCTAACAGCACTGGTTG+TGG | 0.482562 | 7_1:+80394570 | Msa1042410:CDS |
| ACCTCAATGCCATTCATGAT+AGG | 0.492567 | 7_1:-80394739 | None:intergenic |
| CCTTGCATCCATCACACAGT+TGG | 0.511788 | 7_1:-80396006 | None:intergenic |
| AACAAAGGAACTTCGTGCAA+TGG | 0.518430 | 7_1:+80395843 | Msa1042410:CDS |
| ATGGATATGCCTATCATGAA+TGG | 0.542735 | 7_1:+80394730 | Msa1042410:CDS |
| CTAAGTATTGCATTGTTCAA+GGG | 0.546876 | 7_1:-80395961 | None:intergenic |
| CAGTGGACATTCATTGGCGT+GGG | 0.559565 | 7_1:+80394680 | Msa1042410:CDS |
| GCCTATCATGAATGGCATTG+AGG | 0.559799 | 7_1:+80394738 | Msa1042410:CDS |
| TGTATCCAAGCTAACAGCAC+TGG | 0.575373 | 7_1:+80394564 | Msa1042410:CDS |
| TGTGTTTATATAGGCAACAA+AGG | 0.581181 | 7_1:+80395828 | Msa1042410:intron |
| AGATCAATCCAACTGTGTGA+TGG | 0.583988 | 7_1:+80395998 | Msa1042410:CDS |
| TGACCTAATTCTCATGGACA+TGG | 0.592027 | 7_1:+80394711 | Msa1042410:CDS |
| GCAGTGGACATTCATTGGCG+TGG | 0.597898 | 7_1:+80394679 | Msa1042410:CDS |
| AAATTTGGAGTCAAAAGTCA+AGG | 0.637368 | 7_1:+80394637 | Msa1042410:CDS |
| TGGAGTCAAAAGTCAAGGTG+TGG | 0.637883 | 7_1:+80394642 | Msa1042410:CDS |
| GGAGAATGGAAAAGAAGCAG+TGG | 0.653869 | 7_1:+80394663 | Msa1042410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAATATAAATAAAAA+AGG | - | chr7_1:80395796-80395815 | None:intergenic | 0.0% |
| !! | AATATAAATATAAATAAAAA+AGG | - | chr7_1:80395796-80395815 | None:intergenic | 0.0% |
| !! | TATAAAAATATATAAACTTG+GGG | - | chr7_1:80394984-80395003 | None:intergenic | 10.0% |
| !! | CATATAAAAATATATAAACT+TGG | - | chr7_1:80394986-80395005 | None:intergenic | 10.0% |
| !!! | AAAAAAATATTTTACTTTTG+AGG | - | chr7_1:80395350-80395369 | None:intergenic | 10.0% |
| !! | ACTAAAATTAACTATAAAAT+TGG | - | chr7_1:80395520-80395539 | None:intergenic | 10.0% |
| !!! | AATTTTATAGTTAATTTTAG+TGG | + | chr7_1:80395519-80395538 | Msa1042410:intron | 10.0% |
| !! | TATAAAAATATATAAACTTG+GGG | - | chr7_1:80394984-80395003 | None:intergenic | 10.0% |
| !! | CATATAAAAATATATAAACT+TGG | - | chr7_1:80394986-80395005 | None:intergenic | 10.0% |
| !!! | AAAAAAATATTTTACTTTTG+AGG | - | chr7_1:80395350-80395369 | None:intergenic | 10.0% |
| !! | ACTAAAATTAACTATAAAAT+TGG | - | chr7_1:80395520-80395539 | None:intergenic | 10.0% |
| !!! | AATTTTATAGTTAATTTTAG+TGG | + | chr7_1:80395519-80395538 | Msa1042410:intron | 10.0% |
| !!! | ATATTTATATAGTTTGTTAG+AGG | + | chr7_1:80395201-80395220 | Msa1042410:intron | 15.0% |
| !! | AAATTAACTATAAAATTGGA+GGG | - | chr7_1:80395516-80395535 | None:intergenic | 15.0% |
| !! | AAAATTAACTATAAAATTGG+AGG | - | chr7_1:80395517-80395536 | None:intergenic | 15.0% |
| !!! | ATATTTATATAGTTTGTTAG+AGG | + | chr7_1:80395201-80395220 | Msa1042410:intron | 15.0% |
| !! | AAATTAACTATAAAATTGGA+GGG | - | chr7_1:80395516-80395535 | None:intergenic | 15.0% |
| !! | AAAATTAACTATAAAATTGG+AGG | - | chr7_1:80395517-80395536 | None:intergenic | 15.0% |
| !! | CAAAAGATGTTGAATAAATT+TGG | + | chr7_1:80394622-80394641 | Msa1042410:CDS | 20.0% |
| !! | CTCTATAATTAATTAAGTAC+AGG | - | chr7_1:80394768-80394787 | None:intergenic | 20.0% |
| !! | TGATTATGGTCTATATAATT+TGG | + | chr7_1:80395004-80395023 | Msa1042410:intron | 20.0% |
| !! | GAAGAAAATGAAAATACTTA+TGG | + | chr7_1:80395079-80395098 | Msa1042410:intron | 20.0% |
| !! | AGATGAAATACTAAAATTCA+TGG | + | chr7_1:80395909-80395928 | Msa1042410:CDS | 20.0% |
| !! | CAAAAGATGTTGAATAAATT+TGG | + | chr7_1:80394622-80394641 | Msa1042410:CDS | 20.0% |
| !! | CTCTATAATTAATTAAGTAC+AGG | - | chr7_1:80394768-80394787 | None:intergenic | 20.0% |
| !! | TGATTATGGTCTATATAATT+TGG | + | chr7_1:80395004-80395023 | Msa1042410:intron | 20.0% |
| !! | GAAGAAAATGAAAATACTTA+TGG | + | chr7_1:80395079-80395098 | Msa1042410:intron | 20.0% |
| !! | AGATGAAATACTAAAATTCA+TGG | + | chr7_1:80395909-80395928 | Msa1042410:CDS | 20.0% |
| !! | ACATCTTTTGATGAATCTTT+CGG | - | chr7_1:80394612-80394631 | None:intergenic | 25.0% |
| ! | AAAATTTGACCTAATTCTCA+TGG | + | chr7_1:80394705-80394724 | Msa1042410:CDS | 25.0% |
| ! | TGATATATGTACAACCATTT+GGG | + | chr7_1:80394791-80394810 | Msa1042410:intron | 25.0% |
| !! | TTCATTTTCTCTCTTTTCAT+TGG | + | chr7_1:80394831-80394850 | Msa1042410:intron | 25.0% |
| ! | GTCAAAAAGTTGTAATAAAG+TGG | + | chr7_1:80394924-80394943 | Msa1042410:intron | 25.0% |
| ! | TAGTGTACTATTATTGTTCA+TGG | + | chr7_1:80395057-80395076 | Msa1042410:intron | 25.0% |
| !!! | TTATATAGTTTGTTAGAGGA+AGG | + | chr7_1:80395205-80395224 | Msa1042410:intron | 25.0% |
| ! | ACTAAAGGAATTTAAGAATG+AGG | - | chr7_1:80395264-80395283 | None:intergenic | 25.0% |
| ! | TTAAATTCCTTTAGTGTTCA+GGG | + | chr7_1:80395269-80395288 | Msa1042410:intron | 25.0% |
| !!! | CTCATTTGATTTTGTTACTA+TGG | + | chr7_1:80395408-80395427 | Msa1042410:intron | 25.0% |
| !!! | GATAGTTTTATTGAGAAAGA+AGG | - | chr7_1:80395685-80395704 | None:intergenic | 25.0% |
| ! | TGTGTGTTATGTGTTTATAT+AGG | + | chr7_1:80395819-80395838 | Msa1042410:intron | 25.0% |
| !! | ACATCTTTTGATGAATCTTT+CGG | - | chr7_1:80394612-80394631 | None:intergenic | 25.0% |
| ! | AAAATTTGACCTAATTCTCA+TGG | + | chr7_1:80394705-80394724 | Msa1042410:CDS | 25.0% |
| ! | TGATATATGTACAACCATTT+GGG | + | chr7_1:80394791-80394810 | Msa1042410:intron | 25.0% |
| !! | TTCATTTTCTCTCTTTTCAT+TGG | + | chr7_1:80394831-80394850 | Msa1042410:intron | 25.0% |
| ! | GTCAAAAAGTTGTAATAAAG+TGG | + | chr7_1:80394924-80394943 | Msa1042410:intron | 25.0% |
| ! | TAGTGTACTATTATTGTTCA+TGG | + | chr7_1:80395057-80395076 | Msa1042410:intron | 25.0% |
| !!! | TTATATAGTTTGTTAGAGGA+AGG | + | chr7_1:80395205-80395224 | Msa1042410:intron | 25.0% |
| ! | ACTAAAGGAATTTAAGAATG+AGG | - | chr7_1:80395264-80395283 | None:intergenic | 25.0% |
| ! | TTAAATTCCTTTAGTGTTCA+GGG | + | chr7_1:80395269-80395288 | Msa1042410:intron | 25.0% |
| !!! | CTCATTTGATTTTGTTACTA+TGG | + | chr7_1:80395408-80395427 | Msa1042410:intron | 25.0% |
| !!! | GATAGTTTTATTGAGAAAGA+AGG | - | chr7_1:80395685-80395704 | None:intergenic | 25.0% |
| ! | TGTGTGTTATGTGTTTATAT+AGG | + | chr7_1:80395819-80395838 | Msa1042410:intron | 25.0% |
| ! | AAATTTGGAGTCAAAAGTCA+AGG | + | chr7_1:80394637-80394656 | Msa1042410:CDS | 30.0% |
| GTGATATATGTACAACCATT+TGG | + | chr7_1:80394790-80394809 | Msa1042410:intron | 30.0% | |
| TTAGAGGAAGGAGAAATTAT+TGG | + | chr7_1:80395217-80395236 | Msa1042410:intron | 30.0% | |
| TGGTAACAAATATCGAATGT+TGG | + | chr7_1:80395237-80395256 | Msa1042410:intron | 30.0% | |
| CTTAAATTCCTTTAGTGTTC+AGG | + | chr7_1:80395268-80395287 | Msa1042410:intron | 30.0% | |
| TGAGTGAACTTTATAATACG+AGG | - | chr7_1:80395392-80395411 | None:intergenic | 30.0% | |
| TTAAGTCTCTCTAGATGTTT+AGG | + | chr7_1:80395562-80395581 | Msa1042410:intron | 30.0% | |
| AGGAAAATATGTTCACTCAT+TGG | + | chr7_1:80395630-80395649 | Msa1042410:intron | 30.0% | |
| AAAGAAGGAATTAGTACAAG+TGG | - | chr7_1:80395670-80395689 | None:intergenic | 30.0% | |
| TGTGTTTATATAGGCAACAA+AGG | + | chr7_1:80395828-80395847 | Msa1042410:intron | 30.0% | |
| ATACTAAAATTCATGGAAGC+TGG | + | chr7_1:80395916-80395935 | Msa1042410:CDS | 30.0% | |
| ! | CTAAGTATTGCATTGTTCAA+GGG | - | chr7_1:80395964-80395983 | None:intergenic | 30.0% |
| ! | ACTAAGTATTGCATTGTTCA+AGG | - | chr7_1:80395965-80395984 | None:intergenic | 30.0% |
| ! | AAATTTGGAGTCAAAAGTCA+AGG | + | chr7_1:80394637-80394656 | Msa1042410:CDS | 30.0% |
| GTGATATATGTACAACCATT+TGG | + | chr7_1:80394790-80394809 | Msa1042410:intron | 30.0% | |
| TTAGAGGAAGGAGAAATTAT+TGG | + | chr7_1:80395217-80395236 | Msa1042410:intron | 30.0% | |
| TGGTAACAAATATCGAATGT+TGG | + | chr7_1:80395237-80395256 | Msa1042410:intron | 30.0% | |
| CTTAAATTCCTTTAGTGTTC+AGG | + | chr7_1:80395268-80395287 | Msa1042410:intron | 30.0% | |
| TGAGTGAACTTTATAATACG+AGG | - | chr7_1:80395392-80395411 | None:intergenic | 30.0% | |
| TTAAGTCTCTCTAGATGTTT+AGG | + | chr7_1:80395562-80395581 | Msa1042410:intron | 30.0% | |
| AGGAAAATATGTTCACTCAT+TGG | + | chr7_1:80395630-80395649 | Msa1042410:intron | 30.0% | |
| AAAGAAGGAATTAGTACAAG+TGG | - | chr7_1:80395670-80395689 | None:intergenic | 30.0% | |
| TGTGTTTATATAGGCAACAA+AGG | + | chr7_1:80395828-80395847 | Msa1042410:intron | 30.0% | |
| ATACTAAAATTCATGGAAGC+TGG | + | chr7_1:80395916-80395935 | Msa1042410:CDS | 30.0% | |
| ! | CTAAGTATTGCATTGTTCAA+GGG | - | chr7_1:80395964-80395983 | None:intergenic | 30.0% |
| ! | ACTAAGTATTGCATTGTTCA+AGG | - | chr7_1:80395965-80395984 | None:intergenic | 30.0% |
| ! | AGCTTGGATACAAAGTTTTG+AGG | - | chr7_1:80394556-80394575 | None:intergenic | 35.0% |
| TATCCATGTCCATGAGAATT+AGG | - | chr7_1:80394717-80394736 | None:intergenic | 35.0% | |
| ATGGATATGCCTATCATGAA+TGG | + | chr7_1:80394730-80394749 | Msa1042410:CDS | 35.0% | |
| TGTCATCAAATTGTCCCAAA+TGG | - | chr7_1:80394808-80394827 | None:intergenic | 35.0% | |
| AAATACTTATGGCCCAACAT+TGG | + | chr7_1:80395090-80395109 | Msa1042410:intron | 35.0% | |
| ! | AAAGTACCTTCACCAATGTT+GGG | - | chr7_1:80395105-80395124 | None:intergenic | 35.0% |
| !! | AAAAGTACCTTCACCAATGT+TGG | - | chr7_1:80395106-80395125 | None:intergenic | 35.0% |
| AAGTTGTGTCTTTACTTGCA+GGG | - | chr7_1:80395307-80395326 | None:intergenic | 35.0% | |
| AAAGTTGTGTCTTTACTTGC+AGG | - | chr7_1:80395308-80395327 | None:intergenic | 35.0% | |
| TGCAAGTAAAGACACAACTT+TGG | + | chr7_1:80395307-80395326 | Msa1042410:intron | 35.0% | |
| GAAGATGTAGCTTAGTTGTA+TGG | - | chr7_1:80395602-80395621 | None:intergenic | 35.0% | |
| ACAACTAAGCTACATCTTCA+AGG | + | chr7_1:80395603-80395622 | Msa1042410:intron | 35.0% | |
| CAACTAAGCTACATCTTCAA+GGG | + | chr7_1:80395604-80395623 | Msa1042410:intron | 35.0% | |
| GGTATTTGTAGCACAATTGT+TGG | + | chr7_1:80395865-80395884 | Msa1042410:CDS | 35.0% | |
| AAAATTCATGGAAGCTGGAT+TGG | + | chr7_1:80395921-80395940 | Msa1042410:CDS | 35.0% | |
| GCAATACTTAGTTCCATTCT+TGG | + | chr7_1:80395973-80395992 | Msa1042410:CDS | 35.0% | |
| ! | AGCTTGGATACAAAGTTTTG+AGG | - | chr7_1:80394556-80394575 | None:intergenic | 35.0% |
| TATCCATGTCCATGAGAATT+AGG | - | chr7_1:80394717-80394736 | None:intergenic | 35.0% | |
| ATGGATATGCCTATCATGAA+TGG | + | chr7_1:80394730-80394749 | Msa1042410:CDS | 35.0% | |
| TGTCATCAAATTGTCCCAAA+TGG | - | chr7_1:80394808-80394827 | None:intergenic | 35.0% | |
| AAATACTTATGGCCCAACAT+TGG | + | chr7_1:80395090-80395109 | Msa1042410:intron | 35.0% | |
| ! | AAAGTACCTTCACCAATGTT+GGG | - | chr7_1:80395105-80395124 | None:intergenic | 35.0% |
| !! | AAAAGTACCTTCACCAATGT+TGG | - | chr7_1:80395106-80395125 | None:intergenic | 35.0% |
| AAGTTGTGTCTTTACTTGCA+GGG | - | chr7_1:80395307-80395326 | None:intergenic | 35.0% | |
| AAAGTTGTGTCTTTACTTGC+AGG | - | chr7_1:80395308-80395327 | None:intergenic | 35.0% | |
| TGCAAGTAAAGACACAACTT+TGG | + | chr7_1:80395307-80395326 | Msa1042410:intron | 35.0% | |
| GAAGATGTAGCTTAGTTGTA+TGG | - | chr7_1:80395602-80395621 | None:intergenic | 35.0% | |
| ACAACTAAGCTACATCTTCA+AGG | + | chr7_1:80395603-80395622 | Msa1042410:intron | 35.0% | |
| CAACTAAGCTACATCTTCAA+GGG | + | chr7_1:80395604-80395623 | Msa1042410:intron | 35.0% | |
| GGTATTTGTAGCACAATTGT+TGG | + | chr7_1:80395865-80395884 | Msa1042410:CDS | 35.0% | |
| AAAATTCATGGAAGCTGGAT+TGG | + | chr7_1:80395921-80395940 | Msa1042410:CDS | 35.0% | |
| GCAATACTTAGTTCCATTCT+TGG | + | chr7_1:80395973-80395992 | Msa1042410:CDS | 35.0% | |
| AAAAGTCAAGGTGTGGAGAA+TGG | + | chr7_1:80394649-80394668 | Msa1042410:CDS | 40.0% | |
| AAGAAGCAGTGGACATTCAT+TGG | + | chr7_1:80394674-80394693 | Msa1042410:CDS | 40.0% | |
| TGACCTAATTCTCATGGACA+TGG | + | chr7_1:80394711-80394730 | Msa1042410:CDS | 40.0% | |
| ACCTCAATGCCATTCATGAT+AGG | - | chr7_1:80394742-80394761 | None:intergenic | 40.0% | |
| AACAAAGGAACTTCGTGCAA+TGG | + | chr7_1:80395843-80395862 | Msa1042410:CDS | 40.0% | |
| ACAAAGGAACTTCGTGCAAT+GGG | + | chr7_1:80395844-80395863 | Msa1042410:CDS | 40.0% | |
| TGGATTGATCTTGCCAAGAA+TGG | - | chr7_1:80395989-80396008 | None:intergenic | 40.0% | |
| AAAAGTCAAGGTGTGGAGAA+TGG | + | chr7_1:80394649-80394668 | Msa1042410:CDS | 40.0% | |
| AAGAAGCAGTGGACATTCAT+TGG | + | chr7_1:80394674-80394693 | Msa1042410:CDS | 40.0% | |
| TGACCTAATTCTCATGGACA+TGG | + | chr7_1:80394711-80394730 | Msa1042410:CDS | 40.0% | |
| ACCTCAATGCCATTCATGAT+AGG | - | chr7_1:80394742-80394761 | None:intergenic | 40.0% | |
| AACAAAGGAACTTCGTGCAA+TGG | + | chr7_1:80395843-80395862 | Msa1042410:CDS | 40.0% | |
| ACAAAGGAACTTCGTGCAAT+GGG | + | chr7_1:80395844-80395863 | Msa1042410:CDS | 40.0% | |
| TGGATTGATCTTGCCAAGAA+TGG | - | chr7_1:80395989-80396008 | None:intergenic | 40.0% | |
| TGTATCCAAGCTAACAGCAC+TGG | + | chr7_1:80394564-80394583 | Msa1042410:CDS | 45.0% | |
| TGGAGTCAAAAGTCAAGGTG+TGG | + | chr7_1:80394642-80394661 | Msa1042410:CDS | 45.0% | |
| GGAGAATGGAAAAGAAGCAG+TGG | + | chr7_1:80394663-80394682 | Msa1042410:CDS | 45.0% | |
| GCCTATCATGAATGGCATTG+AGG | + | chr7_1:80394738-80394757 | Msa1042410:CDS | 45.0% | |
| TTATGGCCCAACATTGGTGA+AGG | + | chr7_1:80395096-80395115 | Msa1042410:intron | 45.0% | |
| GGATCAACCCTGAACACTAA+AGG | - | chr7_1:80395279-80395298 | None:intergenic | 45.0% | |
| CTAAGCTACATCTTCAAGGG+AGG | + | chr7_1:80395607-80395626 | Msa1042410:intron | 45.0% | |
| TGTATCCAAGCTAACAGCAC+TGG | + | chr7_1:80394564-80394583 | Msa1042410:CDS | 45.0% | |
| TGGAGTCAAAAGTCAAGGTG+TGG | + | chr7_1:80394642-80394661 | Msa1042410:CDS | 45.0% | |
| GGAGAATGGAAAAGAAGCAG+TGG | + | chr7_1:80394663-80394682 | Msa1042410:CDS | 45.0% | |
| GCCTATCATGAATGGCATTG+AGG | + | chr7_1:80394738-80394757 | Msa1042410:CDS | 45.0% | |
| TTATGGCCCAACATTGGTGA+AGG | + | chr7_1:80395096-80395115 | Msa1042410:intron | 45.0% | |
| GGATCAACCCTGAACACTAA+AGG | - | chr7_1:80395279-80395298 | None:intergenic | 45.0% | |
| CTAAGCTACATCTTCAAGGG+AGG | + | chr7_1:80395607-80395626 | Msa1042410:intron | 45.0% | |
| !! | ATATAAAAATATATAAACTT+GGG | - | chr7_1:80394985-80395004 | None:intergenic | 5.0% |
| !!! | TATATATTTTTATATGATTA+TGG | + | chr7_1:80394990-80395009 | Msa1042410:intron | 5.0% |
| !!! | AATAAATATTTATTTTTTGA+AGG | + | chr7_1:80395142-80395161 | Msa1042410:intron | 5.0% |
| !! | AGAAATAAATATTTATTTAT+AGG | + | chr7_1:80395169-80395188 | Msa1042410:intron | 5.0% |
| !!! | TTTTTAATAGTATTAATTTT+AGG | + | chr7_1:80395366-80395385 | Msa1042410:intron | 5.0% |
| !! | ATATAAAAATATATAAACTT+GGG | - | chr7_1:80394985-80395004 | None:intergenic | 5.0% |
| !!! | TATATATTTTTATATGATTA+TGG | + | chr7_1:80394990-80395009 | Msa1042410:intron | 5.0% |
| !!! | AATAAATATTTATTTTTTGA+AGG | + | chr7_1:80395142-80395161 | Msa1042410:intron | 5.0% |
| !! | AGAAATAAATATTTATTTAT+AGG | + | chr7_1:80395169-80395188 | Msa1042410:intron | 5.0% |
| !!! | TTTTTAATAGTATTAATTTT+AGG | + | chr7_1:80395366-80395385 | Msa1042410:intron | 5.0% |
| ! | CACAACCAGTGCTGTTAGCT+TGG | - | chr7_1:80394572-80394591 | None:intergenic | 50.0% |
| !! | CAAGCTAACAGCACTGGTTG+TGG | + | chr7_1:80394570-80394589 | Msa1042410:CDS | 50.0% |
| CAGTGGACATTCATTGGCGT+GGG | + | chr7_1:80394680-80394699 | Msa1042410:CDS | 50.0% | |
| GTCTTTACTTGCAGGGTCGT+TGG | - | chr7_1:80395300-80395319 | None:intergenic | 50.0% | |
| AGCTACATCTTCAAGGGAGG+AGG | + | chr7_1:80395610-80395629 | Msa1042410:intron | 50.0% | |
| TGGTGTGTCATCACGCTCTA+TGG | + | chr7_1:80395885-80395904 | Msa1042410:CDS | 50.0% | |
| ! | CACAACCAGTGCTGTTAGCT+TGG | - | chr7_1:80394572-80394591 | None:intergenic | 50.0% |
| !! | CAAGCTAACAGCACTGGTTG+TGG | + | chr7_1:80394570-80394589 | Msa1042410:CDS | 50.0% |
| CAGTGGACATTCATTGGCGT+GGG | + | chr7_1:80394680-80394699 | Msa1042410:CDS | 50.0% | |
| GTCTTTACTTGCAGGGTCGT+TGG | - | chr7_1:80395300-80395319 | None:intergenic | 50.0% | |
| AGCTACATCTTCAAGGGAGG+AGG | + | chr7_1:80395610-80395629 | Msa1042410:intron | 50.0% | |
| TGGTGTGTCATCACGCTCTA+TGG | + | chr7_1:80395885-80395904 | Msa1042410:CDS | 50.0% | |
| GCAGTGGACATTCATTGGCG+TGG | + | chr7_1:80394679-80394698 | Msa1042410:CDS | 55.0% | |
| GCAGTGGACATTCATTGGCG+TGG | + | chr7_1:80394679-80394698 | Msa1042410:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 80394544 | 80396017 | 80394544 | ID=Msa1042410;Name=Msa1042410 |
| chr7_1 | mRNA | 80394544 | 80396017 | 80394544 | ID=Msa1042410-mRNA-1;Parent=Msa1042410;Name=Msa1042410-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|130 |
| chr7_1 | exon | 80394544 | 80394759 | 80394544 | ID=Msa1042410-mRNA-1:exon:21911;Parent=Msa1042410-mRNA-1 |
| chr7_1 | exon | 80395841 | 80396017 | 80395841 | ID=Msa1042410-mRNA-1:exon:21912;Parent=Msa1042410-mRNA-1 |
| chr7_1 | CDS | 80394544 | 80394759 | 80394544 | ID=Msa1042410-mRNA-1:cds;Parent=Msa1042410-mRNA-1 |
| chr7_1 | CDS | 80395841 | 80396017 | 80395841 | ID=Msa1042410-mRNA-1:cds;Parent=Msa1042410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
