Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043070 | XP_024641950.1 | 54.286 | 105 | 47 | 1 | 90 | 193 | 224 | 328 | 2.22e-29 | 131 |
| Msa1043070 | XP_024641950.1 | 89.506 | 162 | 17 | 0 | 192 | 353 | 544 | 705 | 3.22e-100 | 323 |
| Msa1043070 | XP_024641950.1 | 90.769 | 195 | 18 | 0 | 1 | 195 | 1 | 195 | 2.23e-121 | 378 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043070 | sp|Q3E7I5|FRS12_ARATH | 37.864 | 103 | 52 | 1 | 89 | 191 | 41 | 131 | 8.62e-16 | 82.4 |
| Msa1043070 | sp|Q3E7I5|FRS12_ARATH | 36.634 | 101 | 52 | 1 | 91 | 191 | 211 | 299 | 5.34e-13 | 73.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043070 | A0A396HGW4 | 54.286 | 105 | 47 | 1 | 90 | 193 | 224 | 328 | 1.06e-29 | 131 |
| Msa1043070 | A0A396HGW4 | 89.506 | 162 | 17 | 0 | 192 | 353 | 544 | 705 | 1.54e-100 | 323 |
| Msa1043070 | A0A396HGW4 | 90.769 | 195 | 18 | 0 | 1 | 195 | 1 | 195 | 1.07e-121 | 378 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1043070 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043070 | MtrunA17_Chr6g0458391 | 90.769 | 195 | 18 | 0 | 1 | 195 | 1 | 195 | 2.05e-125 | 378 |
| Msa1043070 | MtrunA17_Chr6g0458391 | 89.506 | 162 | 17 | 0 | 192 | 353 | 544 | 705 | 2.96e-104 | 323 |
| Msa1043070 | MtrunA17_Chr6g0458391 | 54.286 | 105 | 47 | 1 | 90 | 193 | 224 | 328 | 2.04e-33 | 131 |
| Msa1043070 | MtrunA17_Chr1g0203721 | 34.568 | 162 | 106 | 0 | 192 | 353 | 402 | 563 | 2.46e-32 | 128 |
| Msa1043070 | MtrunA17_Chr1g0203721 | 48.438 | 128 | 62 | 2 | 93 | 216 | 65 | 192 | 7.90e-32 | 127 |
| Msa1043070 | MtrunA17_Chr3g0082121 | 41.007 | 139 | 78 | 3 | 64 | 198 | 14 | 152 | 7.41e-21 | 94.4 |
| Msa1043070 | MtrunA17_Chr3g0082121 | 35.714 | 126 | 80 | 1 | 195 | 319 | 375 | 500 | 5.22e-18 | 85.5 |
| Msa1043070 | MtrunA17_Chr7g0233911 | 34.416 | 154 | 93 | 4 | 54 | 204 | 2 | 150 | 1.25e-18 | 83.6 |
| Msa1043070 | MtrunA17_Chr5g0401121 | 36.090 | 133 | 80 | 3 | 65 | 192 | 27 | 159 | 1.30e-18 | 82.4 |
| Msa1043070 | MtrunA17_Chr2g0329421 | 34.615 | 130 | 84 | 1 | 65 | 194 | 1 | 129 | 1.37e-17 | 80.5 |
| Msa1043070 | MtrunA17_Chr4g0033611 | 31.818 | 154 | 87 | 3 | 91 | 242 | 76 | 213 | 1.37e-16 | 78.6 |
| Msa1043070 | MtrunA17_Chr2g0287061 | 37.037 | 108 | 56 | 1 | 84 | 191 | 176 | 271 | 1.53e-16 | 81.3 |
| Msa1043070 | MtrunA17_Chr2g0287061 | 33.333 | 123 | 70 | 1 | 67 | 189 | 5 | 115 | 5.68e-13 | 70.5 |
| Msa1043070 | MtrunA17_Chr7g0258861 | 40.187 | 107 | 59 | 3 | 91 | 194 | 10 | 114 | 9.13e-16 | 77.0 |
| Msa1043070 | MtrunA17_Chr8g0363841 | 30.935 | 139 | 95 | 1 | 191 | 328 | 352 | 490 | 3.38e-15 | 77.0 |
| Msa1043070 | MtrunA17_Chr5g0448761 | 29.530 | 149 | 105 | 0 | 203 | 351 | 414 | 562 | 4.53e-15 | 76.6 |
| Msa1043070 | MtrunA17_Chr5g0448761 | 37.705 | 122 | 67 | 4 | 89 | 201 | 58 | 179 | 2.34e-13 | 71.6 |
| Msa1043070 | MtrunA17_Chr5g0448511 | 27.517 | 149 | 108 | 0 | 203 | 351 | 186 | 334 | 7.61e-14 | 72.8 |
| Msa1043070 | MtrunA17_Chr3g0078041 | 37.143 | 105 | 64 | 2 | 91 | 193 | 50 | 154 | 3.19e-13 | 68.6 |
| Msa1043070 | MtrunA17_Chr2g0276841 | 34.615 | 130 | 73 | 4 | 91 | 214 | 70 | 193 | 3.29e-13 | 70.9 |
| Msa1043070 | MtrunA17_Chr2g0329361 | 26.708 | 161 | 107 | 4 | 37 | 194 | 15 | 167 | 3.62e-13 | 68.9 |
| Msa1043070 | MtrunA17_Chr7g0238821 | 39.394 | 99 | 56 | 4 | 95 | 191 | 1 | 97 | 6.51e-13 | 64.7 |
| Msa1043070 | MtrunA17_Chr2g0294841 | 32.836 | 134 | 79 | 4 | 70 | 192 | 22 | 155 | 6.96e-13 | 70.1 |
| Msa1043070 | MtrunA17_Chr2g0324011 | 27.848 | 158 | 113 | 1 | 192 | 348 | 346 | 503 | 9.50e-13 | 69.3 |
| Msa1043070 | MtrunA17_Chr2g0324011 | 39.806 | 103 | 58 | 4 | 91 | 191 | 10 | 110 | 2.13e-12 | 68.2 |
| Msa1043070 | MtrunA17_Chr1g0202341 | 35.455 | 110 | 65 | 3 | 89 | 194 | 49 | 156 | 1.95e-12 | 68.6 |
| Msa1043070 | MtrunA17_Chr1g0202341 | 29.054 | 148 | 105 | 0 | 203 | 350 | 398 | 545 | 2.64e-12 | 68.2 |
| Msa1043070 | MtrunA17_Chr2g0308841 | 22.561 | 164 | 126 | 1 | 191 | 353 | 3 | 166 | 1.22e-11 | 64.3 |
| Msa1043070 | MtrunA17_Chr2g0287651 | 35.135 | 111 | 66 | 4 | 93 | 199 | 77 | 185 | 5.17e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043070 | AT3G07500.1 | 39.496 | 119 | 71 | 1 | 75 | 192 | 17 | 135 | 2.36e-19 | 85.9 |
| Msa1043070 | AT3G59470.3 | 36.923 | 130 | 80 | 1 | 63 | 192 | 44 | 171 | 6.77e-19 | 85.5 |
| Msa1043070 | AT3G59470.1 | 36.923 | 130 | 80 | 1 | 63 | 192 | 44 | 171 | 6.77e-19 | 85.5 |
| Msa1043070 | AT3G59470.2 | 36.923 | 130 | 80 | 1 | 63 | 192 | 56 | 183 | 7.81e-19 | 85.5 |
| Msa1043070 | AT5G18960.2 | 37.864 | 103 | 52 | 1 | 89 | 191 | 41 | 131 | 8.77e-17 | 82.4 |
| Msa1043070 | AT5G18960.2 | 36.634 | 101 | 52 | 1 | 91 | 191 | 211 | 299 | 5.42e-14 | 73.9 |
| Msa1043070 | AT5G18960.1 | 37.864 | 103 | 52 | 1 | 89 | 191 | 41 | 131 | 8.77e-17 | 82.4 |
| Msa1043070 | AT5G18960.1 | 36.634 | 101 | 52 | 1 | 91 | 191 | 211 | 299 | 5.42e-14 | 73.9 |
| Msa1043070 | AT3G06250.2 | 35.780 | 109 | 58 | 1 | 83 | 191 | 20 | 116 | 2.95e-16 | 80.9 |
| Msa1043070 | AT3G06250.2 | 35.644 | 101 | 53 | 1 | 91 | 191 | 190 | 278 | 1.40e-13 | 72.4 |
| Msa1043070 | AT3G06250.1 | 35.780 | 109 | 58 | 1 | 83 | 191 | 20 | 116 | 2.95e-16 | 80.9 |
| Msa1043070 | AT3G06250.1 | 35.644 | 101 | 53 | 1 | 91 | 191 | 190 | 278 | 1.40e-13 | 72.4 |
| Msa1043070 | AT3G06250.3 | 35.780 | 109 | 58 | 1 | 83 | 191 | 20 | 116 | 2.95e-16 | 80.9 |
| Msa1043070 | AT3G06250.3 | 35.644 | 101 | 53 | 1 | 91 | 191 | 190 | 278 | 1.40e-13 | 72.4 |
| Msa1043070 | AT4G38180.1 | 31.169 | 154 | 106 | 0 | 200 | 353 | 420 | 573 | 3.59e-16 | 80.5 |
| Msa1043070 | AT4G38180.1 | 38.017 | 121 | 67 | 3 | 89 | 201 | 71 | 191 | 2.90e-15 | 77.8 |
| Msa1043070 | AT4G12850.4 | 36.634 | 101 | 62 | 1 | 91 | 191 | 11 | 109 | 4.75e-15 | 72.0 |
| Msa1043070 | AT4G12850.2 | 36.634 | 101 | 62 | 1 | 91 | 191 | 11 | 109 | 5.89e-15 | 71.6 |
| Msa1043070 | AT4G12850.1 | 36.634 | 101 | 62 | 1 | 91 | 191 | 11 | 109 | 7.53e-15 | 72.4 |
| Msa1043070 | AT4G38170.1 | 27.160 | 162 | 117 | 1 | 190 | 351 | 176 | 336 | 1.86e-13 | 72.0 |
| Msa1043070 | AT2G43280.1 | 32.231 | 121 | 76 | 2 | 77 | 193 | 8 | 126 | 6.74e-13 | 67.4 |
| Msa1043070 | AT1G10240.2 | 34.586 | 133 | 79 | 4 | 70 | 194 | 25 | 157 | 3.53e-12 | 68.2 |
| Msa1043070 | AT1G10240.1 | 34.586 | 133 | 79 | 4 | 70 | 194 | 25 | 157 | 3.53e-12 | 68.2 |
| Msa1043070 | AT1G76320.2 | 28.387 | 155 | 111 | 0 | 195 | 349 | 328 | 482 | 1.29e-11 | 66.6 |
| Msa1043070 | AT1G76320.1 | 28.387 | 155 | 111 | 0 | 195 | 349 | 328 | 482 | 1.32e-11 | 66.6 |
| Msa1043070 | AT1G76320.4 | 28.387 | 155 | 111 | 0 | 195 | 349 | 328 | 482 | 1.32e-11 | 66.6 |
| Msa1043070 | AT1G76320.3 | 28.387 | 155 | 111 | 0 | 195 | 349 | 328 | 482 | 2.05e-11 | 65.9 |
| Msa1043070 | AT1G52520.1 | 33.824 | 136 | 72 | 5 | 65 | 189 | 52 | 180 | 9.64e-11 | 63.9 |
Find 75 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATGCTTCATATTCTTTC+TGG | 0.098501 | 7_2:-914948 | None:intergenic |
| TCGAATTCCATGCCAATATT+TGG | 0.165608 | 7_2:-913191 | None:intergenic |
| GTTTCCTGTTGAAATTTCTT+TGG | 0.213769 | 7_2:-913377 | None:intergenic |
| TGGAATATCTCAAATATCTT+TGG | 0.250238 | 7_2:-914928 | None:intergenic |
| CCGGCATATGCCAGCCCTAA+TGG | 0.285010 | 7_2:+914864 | Msa1043070:CDS |
| ATGTAATGATATCGCCCATT+AGG | 0.298549 | 7_2:-914879 | None:intergenic |
| AATACGAAATTGGTCTTCAT+TGG | 0.304948 | 7_2:-913072 | None:intergenic |
| GTCTATGGCAGGTGAATCTT+CGG | 0.322499 | 7_2:-913322 | None:intergenic |
| TCAAATATCTTTGGTGTGTA+TGG | 0.331453 | 7_2:-914919 | None:intergenic |
| CTTCCATTTCTCAAGCATCT+TGG | 0.339707 | 7_2:+914787 | Msa1043070:CDS |
| ATATATGTGGCGCCAAATAT+TGG | 0.340354 | 7_2:+913179 | Msa1043070:CDS |
| GGATTTGTATGGCCTTTGTT+AGG | 0.350707 | 7_2:-913356 | None:intergenic |
| ATCAACAAAAGTAGGATAGA+TGG | 0.360653 | 7_2:+913287 | Msa1043070:CDS |
| TGCTAGCGTCAATACGAAAT+TGG | 0.360891 | 7_2:-913082 | None:intergenic |
| CGGCATATGCCAGCCCTAAT+GGG | 0.368995 | 7_2:+914865 | Msa1043070:CDS |
| TTCCATTTCTCAAGCATCTT+GGG | 0.371604 | 7_2:+914788 | Msa1043070:CDS |
| GTCTTCATTGGAAGTATTTG+AGG | 0.393019 | 7_2:-913060 | None:intergenic |
| TGTAATGATATCGCCCATTA+GGG | 0.398727 | 7_2:-914878 | None:intergenic |
| TTACTTCCTGGAAAACTTCA+AGG | 0.400082 | 7_2:+915338 | Msa1043070:CDS |
| TTCCCAAGATGCTTGAGAAA+TGG | 0.402172 | 7_2:-914790 | None:intergenic |
| TAGGACGAAAACCTTGTCTA+TGG | 0.403464 | 7_2:-913337 | None:intergenic |
| GAAATTTCTTTGGATTTGTA+TGG | 0.410226 | 7_2:-913367 | None:intergenic |
| CACTTTACTGTCTGCAGCAC+AGG | 0.414311 | 7_2:-912952 | None:intergenic |
| GAAAGGTTTCAGCATAAGAA+AGG | 0.423022 | 7_2:+913259 | Msa1043070:CDS |
| GTGACACGAAACTTGCCATT+TGG | 0.430039 | 7_2:-913440 | None:intergenic |
| TCTGCAGCACAGGAATCCTT+CGG | 0.440191 | 7_2:-912942 | None:intergenic |
| TCCATCTGAGTAAGGCCAAC+AGG | 0.444164 | 7_2:-913017 | None:intergenic |
| CCATTAGGGCTGGCATATGC+CGG | 0.448770 | 7_2:-914864 | None:intergenic |
| CAAAATCCTCTTCTTCCTCA+TGG | 0.453789 | 7_2:-914570 | None:intergenic |
| CTGCAGCACAGGAATCCTTC+GGG | 0.455610 | 7_2:-912941 | None:intergenic |
| TCTCAAGCATCTTGGGAAGA+TGG | 0.458795 | 7_2:+914795 | Msa1043070:CDS |
| TCTATGGCAGGTGAATCTTC+GGG | 0.473803 | 7_2:-913321 | None:intergenic |
| AGGATTTCATCAACAAAAGT+AGG | 0.483308 | 7_2:+913279 | Msa1043070:CDS |
| TTTCGTATGCTATGGCCCAT+TGG | 0.485848 | 7_2:-914672 | None:intergenic |
| AGTCAAATGTGCCAAGCAAC+CGG | 0.486331 | 7_2:-913405 | None:intergenic |
| AAATCCAAAGAAATTTCAAC+AGG | 0.487037 | 7_2:+913373 | Msa1043070:CDS |
| ACTATTTCTCGTCAGCCAAA+TGG | 0.488160 | 7_2:+913425 | Msa1043070:CDS |
| AACAAGTATGCTATTATGAA+AGG | 0.494730 | 7_2:+913242 | Msa1043070:CDS |
| TTTCAACAGGAAACAAGAAC+CGG | 0.495286 | 7_2:+913386 | Msa1043070:CDS |
| AACTTCAAGGTTGAGAGAAA+AGG | 0.496399 | 7_2:+915351 | Msa1043070:CDS |
| CTCTGCTATAGAGGTAGCAT+CGG | 0.505769 | 7_2:-913126 | None:intergenic |
| TCCTGTTGGCCTTACTCAGA+TGG | 0.506262 | 7_2:+913016 | Msa1043070:CDS |
| CAATGATTTCCATCTGAGTA+AGG | 0.506463 | 7_2:-913025 | None:intergenic |
| GGAAACAAGAACCGGTTGCT+TGG | 0.507283 | 7_2:+913394 | Msa1043070:CDS |
| TTGGGAAGATGGTGACTGAT+TGG | 0.508876 | 7_2:+914806 | Msa1043070:CDS |
| TATTGGCATGGAATTCGAAT+CGG | 0.511843 | 7_2:+913196 | Msa1043070:CDS |
| ATACGAAAGCAGAGACCAAT+GGG | 0.513423 | 7_2:+914657 | Msa1043070:CDS |
| AGTAACGGTCTCTGCTATAG+AGG | 0.516564 | 7_2:-913135 | None:intergenic |
| AATATGTCTTTCGTATGCTA+TGG | 0.517789 | 7_2:-914680 | None:intergenic |
| ACGAAAACCTTGTCTATGGC+AGG | 0.521032 | 7_2:-913333 | None:intergenic |
| TCTGCTATAGAGGTAGCATC+GGG | 0.521378 | 7_2:-913125 | None:intergenic |
| ATGATATCGCCCATTAGGGC+TGG | 0.523553 | 7_2:-914874 | None:intergenic |
| TGCAAGCAAGCTTGCCATGT+CGG | 0.539631 | 7_2:-914710 | None:intergenic |
| CTCATTTGTTACATCAGTAA+CGG | 0.549751 | 7_2:-913150 | None:intergenic |
| CATGGACATGTATAATCTGT+GGG | 0.560503 | 7_2:+914612 | Msa1043070:CDS |
| TAATGCATGGAGTACTCTCA+TGG | 0.560601 | 7_2:+914594 | Msa1043070:CDS |
| AGTAGTGATTGATATGGGGC+AGG | 0.561170 | 7_2:+912908 | None:intergenic |
| AGTGCAAATGCTCATCCTGT+TGG | 0.564210 | 7_2:+913002 | Msa1043070:CDS |
| TGTTGTAACACTTGTAAGCA+TGG | 0.566414 | 7_2:-913223 | None:intergenic |
| AGCATGTCTAAATCTAGTGC+TGG | 0.569440 | 7_2:+914963 | Msa1043070:CDS |
| TCATGGACATGTATAATCTG+TGG | 0.576180 | 7_2:+914611 | Msa1043070:CDS |
| TATACGAAAGCAGAGACCAA+TGG | 0.578422 | 7_2:+914656 | Msa1043070:CDS |
| GGTGACTGATTGGCACTACA+AGG | 0.591637 | 7_2:+914816 | Msa1043070:CDS |
| CTGGAGCATTGCAGTGAGAG+TGG | 0.592335 | 7_2:+914982 | Msa1043070:CDS |
| AAATGAGGAGGAAATATATG+TGG | 0.601435 | 7_2:+913166 | Msa1043070:CDS |
| TACTGATGTAACAAATGAGG+AGG | 0.606710 | 7_2:+913154 | Msa1043070:CDS |
| CGTTACTGATGTAACAAATG+AGG | 0.607025 | 7_2:+913151 | Msa1043070:CDS |
| AAGCTAATTATGATGCAAGC+CGG | 0.611824 | 7_2:+914845 | Msa1043070:CDS |
| AGATTCACCTGCCATAGACA+AGG | 0.613560 | 7_2:+913326 | Msa1043070:CDS |
| TTTCGTATTGACGCTAGCAG+AGG | 0.623277 | 7_2:+913086 | Msa1043070:CDS |
| TGTGGCGCCAAATATTGGCA+TGG | 0.636247 | 7_2:+913184 | Msa1043070:CDS |
| AAGCACGTAAAGAATGACTC+AGG | 0.637372 | 7_2:+914760 | Msa1043070:CDS |
| GCAGGAGAATCGATGCCCGA+AGG | 0.641427 | 7_2:+912926 | Msa1043070:CDS |
| ATAATCTGTGGGAAAACGAA+TGG | 0.659852 | 7_2:+914623 | Msa1043070:CDS |
| CTGCTATAGAGGTAGCATCG+GGG | 0.739070 | 7_2:-913124 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCAAATAACAAACATATTT+TGG | + | chr7_2:914146-914165 | Msa1043070:intron | 15.0% |
| !!! | TCAAATAACAAACATATTTT+GGG | + | chr7_2:914147-914166 | Msa1043070:intron | 15.0% |
| !!! | AAATTCATTTTTTTCTGTGA+TGG | - | chr7_2:913524-913543 | None:intergenic | 20.0% |
| !! | TGAGAAAAGATTATGTAAAT+AGG | + | chr7_2:913675-913694 | Msa1043070:intron | 20.0% |
| !! | TGATTATTTATACCAAGAAA+TGG | - | chr7_2:914268-914287 | None:intergenic | 20.0% |
| !! | CAAATCATTTACAAAAGAAT+CGG | - | chr7_2:914533-914552 | None:intergenic | 20.0% |
| !! | TTCTTGATTATAGAAACATA+AGG | + | chr7_2:915145-915164 | Msa1043070:intron | 20.0% |
| !!! | ATTTTAACATGTCATTTAGA+AGG | + | chr7_2:915240-915259 | Msa1043070:intron | 20.0% |
| ! | AACAAGTATGCTATTATGAA+AGG | + | chr7_2:913242-913261 | Msa1043070:CDS | 25.0% |
| ! | GAAATTTCTTTGGATTTGTA+TGG | - | chr7_2:913370-913389 | None:intergenic | 25.0% |
| ! | AAATCCAAAGAAATTTCAAC+AGG | + | chr7_2:913373-913392 | Msa1043070:CDS | 25.0% |
| ! | TTCTTGGTATAAATAATCAC+AGG | + | chr7_2:914269-914288 | Msa1043070:intron | 25.0% |
| ! | TGGAATATCTCAAATATCTT+TGG | - | chr7_2:914931-914950 | None:intergenic | 25.0% |
| !! | AATCAAGAACTTTTAATGCA+TGG | - | chr7_2:915134-915153 | None:intergenic | 25.0% |
| !!! | AGAAGGTTTTTAATTAACCA+AGG | + | chr7_2:915257-915276 | Msa1043070:intron | 25.0% |
| ! | TGTGATAATCTACTGATATA+AGG | + | chr7_2:915308-915327 | Msa1043070:intron | 25.0% |
| !! | AATACGAAATTGGTCTTCAT+TGG | - | chr7_2:913075-913094 | None:intergenic | 30.0% |
| ! | CTCATTTGTTACATCAGTAA+CGG | - | chr7_2:913153-913172 | None:intergenic | 30.0% |
| AAATGAGGAGGAAATATATG+TGG | + | chr7_2:913166-913185 | Msa1043070:CDS | 30.0% | |
| AGGATTTCATCAACAAAAGT+AGG | + | chr7_2:913279-913298 | Msa1043070:CDS | 30.0% | |
| ATCAACAAAAGTAGGATAGA+TGG | + | chr7_2:913287-913306 | Msa1043070:CDS | 30.0% | |
| GTTTCCTGTTGAAATTTCTT+TGG | - | chr7_2:913380-913399 | None:intergenic | 30.0% | |
| GTAAATAGGAGTAAAGTTGA+TGG | + | chr7_2:913689-913708 | Msa1043070:intron | 30.0% | |
| AAGAAGATTTACTTGCTTCA+GGG | + | chr7_2:913724-913743 | Msa1043070:intron | 30.0% | |
| GTTGATATTCACAATTCACA+GGG | - | chr7_2:914006-914025 | None:intergenic | 30.0% | |
| ! | AGTTGATATTCACAATTCAC+AGG | - | chr7_2:914007-914026 | None:intergenic | 30.0% |
| CTTTCAAAGCAAGAAATCAA+AGG | + | chr7_2:914084-914103 | Msa1043070:intron | 30.0% | |
| ! | ATAGTTGACTACAGTGATTT+TGG | + | chr7_2:914184-914203 | Msa1043070:intron | 30.0% |
| ! | CACAGGCAAATGATTATTTT+CGG | + | chr7_2:914286-914305 | Msa1043070:intron | 30.0% |
| ACTTCTATATGATGAATCTG+TGG | + | chr7_2:914315-914334 | Msa1043070:intron | 30.0% | |
| ! | AATCTGTGGAATCTTTTAAG+TGG | + | chr7_2:914329-914348 | Msa1043070:intron | 30.0% |
| !! | TTGATTTGTTTGAGGTAGTA+TGG | - | chr7_2:914446-914465 | None:intergenic | 30.0% |
| ! | AAGAGGATTTTGTTAATGCA+TGG | + | chr7_2:914581-914600 | Msa1043070:CDS | 30.0% |
| AATATGTCTTTCGTATGCTA+TGG | - | chr7_2:914683-914702 | None:intergenic | 30.0% | |
| ! | TCAAATATCTTTGGTGTGTA+TGG | - | chr7_2:914922-914941 | None:intergenic | 30.0% |
| CAATGATTTCCATCTGAGTA+AGG | - | chr7_2:913028-913047 | None:intergenic | 35.0% | |
| !! | GTCTTCATTGGAAGTATTTG+AGG | - | chr7_2:913063-913082 | None:intergenic | 35.0% |
| CGTTACTGATGTAACAAATG+AGG | + | chr7_2:913151-913170 | Msa1043070:CDS | 35.0% | |
| TACTGATGTAACAAATGAGG+AGG | + | chr7_2:913154-913173 | Msa1043070:CDS | 35.0% | |
| ATATATGTGGCGCCAAATAT+TGG | + | chr7_2:913179-913198 | Msa1043070:CDS | 35.0% | |
| TCGAATTCCATGCCAATATT+TGG | - | chr7_2:913194-913213 | None:intergenic | 35.0% | |
| TATTGGCATGGAATTCGAAT+CGG | + | chr7_2:913196-913215 | Msa1043070:CDS | 35.0% | |
| TGTTGTAACACTTGTAAGCA+TGG | - | chr7_2:913226-913245 | None:intergenic | 35.0% | |
| GAAAGGTTTCAGCATAAGAA+AGG | + | chr7_2:913259-913278 | Msa1043070:CDS | 35.0% | |
| TTTCAACAGGAAACAAGAAC+CGG | + | chr7_2:913386-913405 | Msa1043070:CDS | 35.0% | |
| TTATAATGCATATGCTGCAC+AGG | + | chr7_2:913640-913659 | Msa1043070:intron | 35.0% | |
| CAAGAAGATTTACTTGCTTC+AGG | + | chr7_2:913723-913742 | Msa1043070:intron | 35.0% | |
| AAAACACAATCATGAGCTTG+TGG | + | chr7_2:913880-913899 | Msa1043070:intron | 35.0% | |
| ATTTCTCTTGTGCGTTTGAA+AGG | - | chr7_2:914031-914050 | None:intergenic | 35.0% | |
| AGGAAGAAGTCGAAAAGATT+AGG | + | chr7_2:914056-914075 | Msa1043070:intron | 35.0% | |
| !! | GCTGTTTCATGTTTTTATCG+AGG | + | chr7_2:914351-914370 | Msa1043070:intron | 35.0% |
| TGATCTCTTAGGATTGTCTT+TGG | - | chr7_2:914394-914413 | None:intergenic | 35.0% | |
| CTATTGCATCTTGATCTCTT+AGG | - | chr7_2:914405-914424 | None:intergenic | 35.0% | |
| !! | CAAACTCGTTGATTTGTTTG+AGG | - | chr7_2:914454-914473 | None:intergenic | 35.0% |
| CAAATCAACGAGTTTGTGTA+TGG | + | chr7_2:914458-914477 | Msa1043070:intron | 35.0% | |
| ! | TTTTAACCATGAGGAAGAAG+AGG | + | chr7_2:914564-914583 | Msa1043070:CDS | 35.0% |
| TCATGGACATGTATAATCTG+TGG | + | chr7_2:914611-914630 | Msa1043070:CDS | 35.0% | |
| CATGGACATGTATAATCTGT+GGG | + | chr7_2:914612-914631 | Msa1043070:CDS | 35.0% | |
| ATAATCTGTGGGAAAACGAA+TGG | + | chr7_2:914623-914642 | Msa1043070:CDS | 35.0% | |
| !!! | ACATATTTTTTGTGCCGACA+TGG | + | chr7_2:914696-914715 | Msa1043070:CDS | 35.0% |
| TTCCATTTCTCAAGCATCTT+GGG | + | chr7_2:914788-914807 | Msa1043070:CDS | 35.0% | |
| AAGCTAATTATGATGCAAGC+CGG | + | chr7_2:914845-914864 | Msa1043070:CDS | 35.0% | |
| TGTAATGATATCGCCCATTA+GGG | - | chr7_2:914881-914900 | None:intergenic | 35.0% | |
| ATGTAATGATATCGCCCATT+AGG | - | chr7_2:914882-914901 | None:intergenic | 35.0% | |
| GACATGCTTCATATTCTTTC+TGG | - | chr7_2:914951-914970 | None:intergenic | 35.0% | |
| CGAAAGTAACTGTATACTCT+CGG | - | chr7_2:915047-915066 | None:intergenic | 35.0% | |
| TGTATGAAGTTTGAGTGTGT+GGG | + | chr7_2:915096-915115 | Msa1043070:intron | 35.0% | |
| !! | CTCTTTAAGATGTACTTGGA+TGG | - | chr7_2:915177-915196 | None:intergenic | 35.0% |
| !! | CCATCTCTTTAAGATGTACT+TGG | - | chr7_2:915181-915200 | None:intergenic | 35.0% |
| CCAAGTACATCTTAAAGAGA+TGG | + | chr7_2:915178-915197 | Msa1043070:intron | 35.0% | |
| CAAAAAATGCATCCATGTGT+GGG | - | chr7_2:915283-915302 | None:intergenic | 35.0% | |
| ACAAAAAATGCATCCATGTG+TGG | - | chr7_2:915284-915303 | None:intergenic | 35.0% | |
| TTACTTCCTGGAAAACTTCA+AGG | + | chr7_2:915338-915357 | Msa1043070:CDS | 35.0% | |
| AACTTCAAGGTTGAGAGAAA+AGG | + | chr7_2:915351-915370 | Msa1043070:CDS | 35.0% | |
| TGCTAGCGTCAATACGAAAT+TGG | - | chr7_2:913085-913104 | None:intergenic | 40.0% | |
| TAGGACGAAAACCTTGTCTA+TGG | - | chr7_2:913340-913359 | None:intergenic | 40.0% | |
| ! | CAAGGTTTTCGTCCTAACAA+AGG | + | chr7_2:913344-913363 | Msa1043070:CDS | 40.0% |
| GGATTTGTATGGCCTTTGTT+AGG | - | chr7_2:913359-913378 | None:intergenic | 40.0% | |
| ! | ACTATTTCTCGTCAGCCAAA+TGG | + | chr7_2:913425-913444 | Msa1043070:CDS | 40.0% |
| ! | TTGGATGGAGTACCAAAACT+GGG | + | chr7_2:913581-913600 | Msa1043070:intron | 40.0% |
| ! | TCAAATCCCATTCCCAGTTT+TGG | - | chr7_2:913596-913615 | None:intergenic | 40.0% |
| ACTGGGAATGGGATTTGATT+CGG | + | chr7_2:913598-913617 | Msa1043070:intron | 40.0% | |
| AGATTTACTTGCTTCAGGGA+AGG | + | chr7_2:913728-913747 | Msa1043070:intron | 40.0% | |
| GCAGAAAGAGAAACGAGATA+CGG | + | chr7_2:913757-913776 | Msa1043070:intron | 40.0% | |
| ATACGGATGTAAAGAGACCT+CGG | + | chr7_2:913774-913793 | Msa1043070:intron | 40.0% | |
| ! | ATTATTTCTCGTCAGCCTGA+TGG | + | chr7_2:913830-913849 | Msa1043070:intron | 40.0% |
| GAAGACAACATTGTCGATGA+AGG | + | chr7_2:913959-913978 | Msa1043070:intron | 40.0% | |
| ! | CGATGAAGGTTTTCATGATC+TGG | + | chr7_2:913973-913992 | Msa1043070:intron | 40.0% |
| ACGCACAAGAGAAATACAAG+AGG | + | chr7_2:914036-914055 | Msa1043070:intron | 40.0% | |
| ATACCAAGAAATGGAGCGAA+TGG | - | chr7_2:914259-914278 | None:intergenic | 40.0% | |
| ! | GTTTTTATCGAGGCTATGTC+TGG | + | chr7_2:914361-914380 | Msa1043070:intron | 40.0% |
| TCTTAGGATTGTCTTTGGCT+TGG | - | chr7_2:914389-914408 | None:intergenic | 40.0% | |
| CATATGAGTCAGTTGCTTGA+GGG | - | chr7_2:914500-914519 | None:intergenic | 40.0% | |
| ACATATGAGTCAGTTGCTTG+AGG | - | chr7_2:914501-914520 | None:intergenic | 40.0% | |
| !!! | CAGCTGCTTTTTTAACCATG+AGG | + | chr7_2:914555-914574 | Msa1043070:intron | 40.0% |
| CAAAATCCTCTTCTTCCTCA+TGG | - | chr7_2:914573-914592 | None:intergenic | 40.0% | |
| ! | TAATGCATGGAGTACTCTCA+TGG | + | chr7_2:914594-914613 | Msa1043070:CDS | 40.0% |
| TATACGAAAGCAGAGACCAA+TGG | + | chr7_2:914656-914675 | Msa1043070:CDS | 40.0% | |
| ATACGAAAGCAGAGACCAAT+GGG | + | chr7_2:914657-914676 | Msa1043070:CDS | 40.0% | |
| AAGCACGTAAAGAATGACTC+AGG | + | chr7_2:914760-914779 | Msa1043070:CDS | 40.0% | |
| CTTCCATTTCTCAAGCATCT+TGG | + | chr7_2:914787-914806 | Msa1043070:CDS | 40.0% | |
| TTCCCAAGATGCTTGAGAAA+TGG | - | chr7_2:914793-914812 | None:intergenic | 40.0% | |
| AGCATGTCTAAATCTAGTGC+TGG | + | chr7_2:914963-914982 | Msa1043070:CDS | 40.0% | |
| CTGTATGAAGTTTGAGTGTG+TGG | + | chr7_2:915095-915114 | Msa1043070:intron | 40.0% | |
| ! | TAAGGCAGCATTTTACTTCC+TGG | + | chr7_2:915326-915345 | Msa1043070:intron | 40.0% |
| ! | TCTCAACCTTGAAGTTTTCC+AGG | - | chr7_2:915347-915366 | None:intergenic | 40.0% |
| AGTGCAAATGCTCATCCTGT+TGG | + | chr7_2:913002-913021 | Msa1043070:CDS | 45.0% | |
| ! | TTTCGTATTGACGCTAGCAG+AGG | + | chr7_2:913086-913105 | Msa1043070:CDS | 45.0% |
| TCTGCTATAGAGGTAGCATC+GGG | - | chr7_2:913128-913147 | None:intergenic | 45.0% | |
| CTCTGCTATAGAGGTAGCAT+CGG | - | chr7_2:913129-913148 | None:intergenic | 45.0% | |
| AGTAACGGTCTCTGCTATAG+AGG | - | chr7_2:913138-913157 | None:intergenic | 45.0% | |
| TCTATGGCAGGTGAATCTTC+GGG | - | chr7_2:913324-913343 | None:intergenic | 45.0% | |
| GTCTATGGCAGGTGAATCTT+CGG | - | chr7_2:913325-913344 | None:intergenic | 45.0% | |
| AGATTCACCTGCCATAGACA+AGG | + | chr7_2:913326-913345 | Msa1043070:CDS | 45.0% | |
| ACGAAAACCTTGTCTATGGC+AGG | - | chr7_2:913336-913355 | None:intergenic | 45.0% | |
| AGTCAAATGTGCCAAGCAAC+CGG | - | chr7_2:913408-913427 | None:intergenic | 45.0% | |
| GTGACACGAAACTTGCCATT+TGG | - | chr7_2:913443-913462 | None:intergenic | 45.0% | |
| GGCAGCATATGAGCATTACA+CGG | - | chr7_2:913503-913522 | None:intergenic | 45.0% | |
| ! | TTTTGGTACTCCATCCAACG+TGG | - | chr7_2:913579-913598 | None:intergenic | 45.0% |
| ! | GTTGGATGGAGTACCAAAAC+TGG | + | chr7_2:913580-913599 | Msa1043070:intron | 45.0% |
| ! | TGGAGTACCAAAACTGGGAA+TGG | + | chr7_2:913586-913605 | Msa1043070:intron | 45.0% |
| ! | GGAGTACCAAAACTGGGAAT+GGG | + | chr7_2:913587-913606 | Msa1043070:intron | 45.0% |
| AATGCATATGCTGCACAGGT+AGG | + | chr7_2:913644-913663 | Msa1043070:intron | 45.0% | |
| ! | CTTGCTTCAGGGAAGGTTTT+CGG | + | chr7_2:913735-913754 | Msa1043070:intron | 45.0% |
| CCAATTCTAGTATCCTTCCG+AGG | - | chr7_2:913794-913813 | None:intergenic | 45.0% | |
| CCTCGGAAGGATACTAGAAT+TGG | + | chr7_2:913791-913810 | Msa1043070:intron | 45.0% | |
| GTTACATGATACCTGCCATC+AGG | - | chr7_2:913848-913867 | None:intergenic | 45.0% | |
| AAGAAATGGAGCGAATGGTC+GGG | - | chr7_2:914254-914273 | None:intergenic | 45.0% | |
| CAAGAAATGGAGCGAATGGT+CGG | - | chr7_2:914255-914274 | None:intergenic | 45.0% | |
| !!! | TCAGTTGCTTGAGGGCATTT+TGG | - | chr7_2:914492-914511 | None:intergenic | 45.0% |
| TTTCGTATGCTATGGCCCAT+TGG | - | chr7_2:914675-914694 | None:intergenic | 45.0% | |
| TCTCAAGCATCTTGGGAAGA+TGG | + | chr7_2:914795-914814 | Msa1043070:CDS | 45.0% | |
| TTGGGAAGATGGTGACTGAT+TGG | + | chr7_2:914806-914825 | Msa1043070:CDS | 45.0% | |
| AATTAACCAAGGCCCACACA+TGG | + | chr7_2:915268-915287 | Msa1043070:intron | 45.0% | |
| TCTGCAGCACAGGAATCCTT+CGG | - | chr7_2:912945-912964 | None:intergenic | 50.0% | |
| CACTTTACTGTCTGCAGCAC+AGG | - | chr7_2:912955-912974 | None:intergenic | 50.0% | |
| !! | TCCTGTTGGCCTTACTCAGA+TGG | + | chr7_2:913016-913035 | Msa1043070:CDS | 50.0% |
| TCCATCTGAGTAAGGCCAAC+AGG | - | chr7_2:913020-913039 | None:intergenic | 50.0% | |
| !! | GCATCGGGGTTTTGACACAT+CGG | - | chr7_2:913113-913132 | None:intergenic | 50.0% |
| CTGCTATAGAGGTAGCATCG+GGG | - | chr7_2:913127-913146 | None:intergenic | 50.0% | |
| TGTGGCGCCAAATATTGGCA+TGG | + | chr7_2:913184-913203 | Msa1043070:CDS | 50.0% | |
| GGAAACAAGAACCGGTTGCT+TGG | + | chr7_2:913394-913413 | Msa1043070:CDS | 50.0% | |
| GAACATAACCGAGTCCACGT+TGG | + | chr7_2:913562-913581 | Msa1043070:intron | 50.0% | |
| ATAACCGAGTCCACGTTGGA+TGG | + | chr7_2:913566-913585 | Msa1043070:intron | 50.0% | |
| TACTCCATCCAACGTGGACT+CGG | - | chr7_2:913573-913592 | None:intergenic | 50.0% | |
| !! | GGGAATGGGATTTGATTCGG+AGG | + | chr7_2:913601-913620 | Msa1043070:intron | 50.0% |
| GGATGTAAAGAGACCTCGGA+AGG | + | chr7_2:913778-913797 | Msa1043070:intron | 50.0% | |
| CGACCATTCGCTCCATTTCT+TGG | + | chr7_2:914253-914272 | Msa1043070:intron | 50.0% | |
| TGCAAGCAAGCTTGCCATGT+CGG | - | chr7_2:914713-914732 | None:intergenic | 50.0% | |
| GGTGACTGATTGGCACTACA+AGG | + | chr7_2:914816-914835 | Msa1043070:CDS | 50.0% | |
| ATGATATCGCCCATTAGGGC+TGG | - | chr7_2:914877-914896 | None:intergenic | 50.0% | |
| CTGCAGCACAGGAATCCTTC+GGG | - | chr7_2:912944-912963 | None:intergenic | 55.0% | |
| TTTCTCGTCAGCCTGATGGC+AGG | + | chr7_2:913834-913853 | Msa1043070:intron | 55.0% | |
| ! | CCATTAGGGCTGGCATATGC+CGG | - | chr7_2:914867-914886 | None:intergenic | 55.0% |
| CGGCATATGCCAGCCCTAAT+GGG | + | chr7_2:914865-914884 | Msa1043070:CDS | 55.0% | |
| !! | CTGGAGCATTGCAGTGAGAG+TGG | + | chr7_2:914982-915001 | Msa1043070:CDS | 55.0% |
| ATGCATCCATGTGTGGGCCT+TGG | - | chr7_2:915277-915296 | None:intergenic | 55.0% | |
| GCAGGAGAATCGATGCCCGA+AGG | + | chr7_2:912926-912945 | Msa1043070:CDS | 60.0% | |
| CCGGCATATGCCAGCCCTAA+TGG | + | chr7_2:914864-914883 | Msa1043070:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 912921 | 915377 | 912921 | ID=Msa1043070;Name=Msa1043070 |
| chr7_2 | mRNA | 912921 | 915377 | 912921 | ID=Msa1043070-mRNA-1;Parent=Msa1043070;Name=Msa1043070-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0|0|0.33|1|1|3|0|364 |
| chr7_2 | exon | 912921 | 913501 | 912921 | ID=Msa1043070-mRNA-1:exon:136;Parent=Msa1043070-mRNA-1 |
| chr7_2 | exon | 914558 | 915023 | 914558 | ID=Msa1043070-mRNA-1:exon:137;Parent=Msa1043070-mRNA-1 |
| chr7_2 | exon | 915330 | 915377 | 915330 | ID=Msa1043070-mRNA-1:exon:138;Parent=Msa1043070-mRNA-1 |
| chr7_2 | CDS | 912921 | 913501 | 912921 | ID=Msa1043070-mRNA-1:cds;Parent=Msa1043070-mRNA-1 |
| chr7_2 | CDS | 914558 | 915023 | 914558 | ID=Msa1043070-mRNA-1:cds;Parent=Msa1043070-mRNA-1 |
| chr7_2 | CDS | 915330 | 915377 | 915330 | ID=Msa1043070-mRNA-1:cds;Parent=Msa1043070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
