Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043180 | KEH15542.1 | 73.077 | 104 | 17 | 2 | 2 | 94 | 48 | 151 | 3.59e-41 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043180 | A0A072TDR2 | 73.077 | 104 | 17 | 2 | 2 | 94 | 48 | 151 | 1.71e-41 | 145 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1043180 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 9 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTTTAAAATATATTCATT+TGG | 0.310558 | 7_2:-1067062 | None:intergenic |
| ATTATGCAGACATATCTTGA+TGG | 0.397243 | 7_2:+1067011 | Msa1043180:intron |
| TGGACAAAGGATGCTAATAT+TGG | 0.412634 | 7_2:+1067086 | Msa1043180:CDS |
| AACATCAAGAACTGATTGTA+AGG | 0.444776 | 7_2:+1065651 | Msa1043180:CDS |
| ATATTTGTTTGCTCTAATGC+TGG | 0.447741 | 7_2:+1065559 | Msa1043180:CDS |
| GTATTGTTAAATGTAATGAT+AGG | 0.499697 | 7_2:-1065715 | None:intergenic |
| TGTCATTACTATCAACATGT+TGG | 0.533945 | 7_2:-1065582 | None:intergenic |
| GCTAATATTGGCATTATATG+TGG | 0.576264 | 7_2:+1067098 | Msa1043180:CDS |
| CAATACTCATAATCATGCAA+TGG | 0.611156 | 7_2:+1065732 | Msa1043180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGAATGATTAATTTTTTT+GGG | + | chr7_2:1066037-1066056 | Msa1043180:intron | 10.0% |
| !!! | ATAGAATGATTAATTTTTTT+GGG | + | chr7_2:1066037-1066056 | Msa1043180:intron | 10.0% |
| !!! | GATAGAATGATTAATTTTTT+TGG | + | chr7_2:1066036-1066055 | Msa1043180:intron | 15.0% |
| !! | AATCATATTTAACCATTATT+TGG | - | chr7_2:1066498-1066517 | None:intergenic | 15.0% |
| !! | AATAATGGTTAAATATGATT+TGG | + | chr7_2:1066498-1066517 | Msa1043180:intron | 15.0% |
| !!! | GATAGAATGATTAATTTTTT+TGG | + | chr7_2:1066036-1066055 | Msa1043180:intron | 15.0% |
| !! | AATCATATTTAACCATTATT+TGG | - | chr7_2:1066498-1066517 | None:intergenic | 15.0% |
| !! | AATAATGGTTAAATATGATT+TGG | + | chr7_2:1066498-1066517 | Msa1043180:intron | 15.0% |
| !! | GTATTGTTAAATGTAATGAT+AGG | - | chr7_2:1065718-1065737 | None:intergenic | 20.0% |
| !! | GTATTGCATAAAAGAAATTT+GGG | - | chr7_2:1066005-1066024 | None:intergenic | 20.0% |
| !! | TGTATTGCATAAAAGAAATT+TGG | - | chr7_2:1066006-1066025 | None:intergenic | 20.0% |
| !! | AACATCTCCAAAATAATTAT+AGG | - | chr7_2:1066084-1066103 | None:intergenic | 20.0% |
| !! | AATAATTACAGATCAAGATA+AGG | + | chr7_2:1066289-1066308 | Msa1043180:intron | 20.0% |
| !!! | TGATTTGGAAAAAAAATGAA+TGG | + | chr7_2:1066513-1066532 | Msa1043180:intron | 20.0% |
| !! | AAGGTCTTCATATTATAAAT+AGG | - | chr7_2:1066575-1066594 | None:intergenic | 20.0% |
| !! | TTGTCAACTTTATGAATTTA+TGG | + | chr7_2:1066984-1067003 | Msa1043180:intron | 20.0% |
| !! | TGTCAACTTTATGAATTTAT+GGG | + | chr7_2:1066985-1067004 | Msa1043180:intron | 20.0% |
| !!! | CGCTTTAAAATATATTCATT+TGG | - | chr7_2:1067065-1067084 | None:intergenic | 20.0% |
| !!! | ATGAATATATTTTAAAGCGT+TGG | + | chr7_2:1067066-1067085 | Msa1043180:CDS | 20.0% |
| !! | GTATTGTTAAATGTAATGAT+AGG | - | chr7_2:1065718-1065737 | None:intergenic | 20.0% |
| !! | GTATTGCATAAAAGAAATTT+GGG | - | chr7_2:1066005-1066024 | None:intergenic | 20.0% |
| !! | TGTATTGCATAAAAGAAATT+TGG | - | chr7_2:1066006-1066025 | None:intergenic | 20.0% |
| !! | AACATCTCCAAAATAATTAT+AGG | - | chr7_2:1066084-1066103 | None:intergenic | 20.0% |
| !! | AATAATTACAGATCAAGATA+AGG | + | chr7_2:1066289-1066308 | Msa1043180:intron | 20.0% |
| !!! | TGATTTGGAAAAAAAATGAA+TGG | + | chr7_2:1066513-1066532 | Msa1043180:intron | 20.0% |
| !! | AAGGTCTTCATATTATAAAT+AGG | - | chr7_2:1066575-1066594 | None:intergenic | 20.0% |
| !! | TTGTCAACTTTATGAATTTA+TGG | + | chr7_2:1066984-1067003 | Msa1043180:intron | 20.0% |
| !! | TGTCAACTTTATGAATTTAT+GGG | + | chr7_2:1066985-1067004 | Msa1043180:intron | 20.0% |
| !!! | CGCTTTAAAATATATTCATT+TGG | - | chr7_2:1067065-1067084 | None:intergenic | 20.0% |
| !!! | ATGAATATATTTTAAAGCGT+TGG | + | chr7_2:1067066-1067085 | Msa1043180:CDS | 20.0% |
| !! | TATTGATCCTTGTATTGATA+TGG | + | chr7_2:1065438-1065457 | Msa1043180:intron | 25.0% |
| ! | TCAAATTCCATATCAATACA+AGG | - | chr7_2:1065448-1065467 | None:intergenic | 25.0% |
| !! | TTTGCTAAAAAAGAAGGTTT+TGG | + | chr7_2:1065502-1065521 | Msa1043180:intron | 25.0% |
| ! | TAGTTTCAAAAGCAAAAATG+AGG | + | chr7_2:1065683-1065702 | Msa1043180:CDS | 25.0% |
| ! | TAAGATAGTTTATACTCTTG+GGG | - | chr7_2:1065762-1065781 | None:intergenic | 25.0% |
| ! | CTAAGATAGTTTATACTCTT+GGG | - | chr7_2:1065763-1065782 | None:intergenic | 25.0% |
| !! | GCTTGAAATTTGAACTTTTA+TGG | - | chr7_2:1066414-1066433 | None:intergenic | 25.0% |
| !! | ATTATGCATTGAAGATTTTG+TGG | + | chr7_2:1066462-1066481 | Msa1043180:intron | 25.0% |
| !! | TTTTTGATCTAACACTTAAG+AGG | - | chr7_2:1066765-1066784 | None:intergenic | 25.0% |
| !!! | GTTTCTAGTATAAATAGTTG+CGG | - | chr7_2:1066800-1066819 | None:intergenic | 25.0% |
| !! | AAACATCTTTAAGAAGTTTC+AGG | + | chr7_2:1066816-1066835 | Msa1043180:intron | 25.0% |
| !! | TATTGATCCTTGTATTGATA+TGG | + | chr7_2:1065438-1065457 | Msa1043180:intron | 25.0% |
| ! | TCAAATTCCATATCAATACA+AGG | - | chr7_2:1065448-1065467 | None:intergenic | 25.0% |
| !! | TTTGCTAAAAAAGAAGGTTT+TGG | + | chr7_2:1065502-1065521 | Msa1043180:intron | 25.0% |
| ! | TAGTTTCAAAAGCAAAAATG+AGG | + | chr7_2:1065683-1065702 | Msa1043180:CDS | 25.0% |
| ! | TAAGATAGTTTATACTCTTG+GGG | - | chr7_2:1065762-1065781 | None:intergenic | 25.0% |
| ! | CTAAGATAGTTTATACTCTT+GGG | - | chr7_2:1065763-1065782 | None:intergenic | 25.0% |
| !! | GCTTGAAATTTGAACTTTTA+TGG | - | chr7_2:1066414-1066433 | None:intergenic | 25.0% |
| !! | ATTATGCATTGAAGATTTTG+TGG | + | chr7_2:1066462-1066481 | Msa1043180:intron | 25.0% |
| !! | TTTTTGATCTAACACTTAAG+AGG | - | chr7_2:1066765-1066784 | None:intergenic | 25.0% |
| !!! | GTTTCTAGTATAAATAGTTG+CGG | - | chr7_2:1066800-1066819 | None:intergenic | 25.0% |
| !! | AAACATCTTTAAGAAGTTTC+AGG | + | chr7_2:1066816-1066835 | Msa1043180:intron | 25.0% |
| CATGTTATGACTATCTTCTT+CGG | - | chr7_2:1065216-1065235 | None:intergenic | 30.0% | |
| ! | ACGTCATTTGCTAAAAAAGA+AGG | + | chr7_2:1065496-1065515 | Msa1043180:intron | 30.0% |
| ATATTTGTTTGCTCTAATGC+TGG | + | chr7_2:1065559-1065578 | Msa1043180:CDS | 30.0% | |
| TGTCATTACTATCAACATGT+TGG | - | chr7_2:1065585-1065604 | None:intergenic | 30.0% | |
| AACATCAAGAACTGATTGTA+AGG | + | chr7_2:1065651-1065670 | Msa1043180:CDS | 30.0% | |
| CAATACTCATAATCATGCAA+TGG | + | chr7_2:1065732-1065751 | Msa1043180:CDS | 30.0% | |
| CCTAAGATAGTTTATACTCT+TGG | - | chr7_2:1065764-1065783 | None:intergenic | 30.0% | |
| ! | CCAAGAGTATAAACTATCTT+AGG | + | chr7_2:1065761-1065780 | Msa1043180:intron | 30.0% |
| ! | TCTTAGGTGCCATAAAAAAA+TGG | + | chr7_2:1065777-1065796 | Msa1043180:intron | 30.0% |
| ! | CTTAGGTGCCATAAAAAAAT+GGG | + | chr7_2:1065778-1065797 | Msa1043180:intron | 30.0% |
| AATGTTTAGCAATGAAGGTT+CGG | + | chr7_2:1065867-1065886 | Msa1043180:intron | 30.0% | |
| ! | CTTTCTCTGATAGAGATTTT+TGG | + | chr7_2:1065890-1065909 | Msa1043180:intron | 30.0% |
| AGATCTCTGATCTAAAAATC+TGG | + | chr7_2:1065924-1065943 | Msa1043180:intron | 30.0% | |
| TGATCTAAAAATCTGGATGT+TGG | + | chr7_2:1065931-1065950 | Msa1043180:intron | 30.0% | |
| !!! | AATTTTTTTGGGTTGATGCA+AGG | + | chr7_2:1066048-1066067 | Msa1043180:intron | 30.0% |
| !!! | AGGTTGGCCTATAATTATTT+TGG | + | chr7_2:1066074-1066093 | Msa1043180:intron | 30.0% |
| TGATGATTCAATCCAGTAAA+TGG | - | chr7_2:1066158-1066177 | None:intergenic | 30.0% | |
| ! | CATCATCAGTCCATTTTATT+CGG | + | chr7_2:1066176-1066195 | Msa1043180:intron | 30.0% |
| ! | AAACAGAGAAGTCTTTTACA+TGG | + | chr7_2:1066219-1066238 | Msa1043180:intron | 30.0% |
| TTACATGGTTGTTTGAAAGT+TGG | + | chr7_2:1066234-1066253 | Msa1043180:intron | 30.0% | |
| ! | CTAAGGTATTTCCTAATACT+CGG | + | chr7_2:1066330-1066349 | Msa1043180:intron | 30.0% |
| ! | TTGAAGATTTTGTGGAAGAT+TGG | + | chr7_2:1066470-1066489 | Msa1043180:intron | 30.0% |
| AAAAAAAATGAATGGCTCCA+AGG | + | chr7_2:1066521-1066540 | Msa1043180:intron | 30.0% | |
| CTCTAATTTCATACAAACCT+TGG | - | chr7_2:1066541-1066560 | None:intergenic | 30.0% | |
| TGTATGAAATTAGAGAGTCA+TGG | + | chr7_2:1066546-1066565 | Msa1043180:intron | 30.0% | |
| !!! | ATATGAAGACCTTTTTTGCT+AGG | + | chr7_2:1066582-1066601 | Msa1043180:intron | 30.0% |
| TGTATTCATCCTAGCAAAAA+AGG | - | chr7_2:1066594-1066613 | None:intergenic | 30.0% | |
| AAGGACAAAATCGAGAAAAA+TGG | + | chr7_2:1066868-1066887 | Msa1043180:intron | 30.0% | |
| AGGACAAAATCGAGAAAAAT+GGG | + | chr7_2:1066869-1066888 | Msa1043180:intron | 30.0% | |
| AGAGTCATATACTGTTTATG+TGG | + | chr7_2:1066933-1066952 | Msa1043180:intron | 30.0% | |
| ATAAAGTTGACAACCACATT+TGG | - | chr7_2:1066977-1066996 | None:intergenic | 30.0% | |
| ATTATGCAGACATATCTTGA+TGG | + | chr7_2:1067011-1067030 | Msa1043180:intron | 30.0% | |
| !!! | TATTTTAAAGCGTTGGACAA+AGG | + | chr7_2:1067073-1067092 | Msa1043180:CDS | 30.0% |
| GCTAATATTGGCATTATATG+TGG | + | chr7_2:1067098-1067117 | Msa1043180:CDS | 30.0% | |
| ! | ATATGTTCTCAGATTTTGCA+AGG | - | chr7_2:1067214-1067233 | None:intergenic | 30.0% |
| CATGTTATGACTATCTTCTT+CGG | - | chr7_2:1065216-1065235 | None:intergenic | 30.0% | |
| ! | ACGTCATTTGCTAAAAAAGA+AGG | + | chr7_2:1065496-1065515 | Msa1043180:intron | 30.0% |
| ATATTTGTTTGCTCTAATGC+TGG | + | chr7_2:1065559-1065578 | Msa1043180:CDS | 30.0% | |
| TGTCATTACTATCAACATGT+TGG | - | chr7_2:1065585-1065604 | None:intergenic | 30.0% | |
| AACATCAAGAACTGATTGTA+AGG | + | chr7_2:1065651-1065670 | Msa1043180:CDS | 30.0% | |
| CAATACTCATAATCATGCAA+TGG | + | chr7_2:1065732-1065751 | Msa1043180:CDS | 30.0% | |
| CCTAAGATAGTTTATACTCT+TGG | - | chr7_2:1065764-1065783 | None:intergenic | 30.0% | |
| ! | CCAAGAGTATAAACTATCTT+AGG | + | chr7_2:1065761-1065780 | Msa1043180:intron | 30.0% |
| ! | TCTTAGGTGCCATAAAAAAA+TGG | + | chr7_2:1065777-1065796 | Msa1043180:intron | 30.0% |
| ! | CTTAGGTGCCATAAAAAAAT+GGG | + | chr7_2:1065778-1065797 | Msa1043180:intron | 30.0% |
| AATGTTTAGCAATGAAGGTT+CGG | + | chr7_2:1065867-1065886 | Msa1043180:intron | 30.0% | |
| ! | CTTTCTCTGATAGAGATTTT+TGG | + | chr7_2:1065890-1065909 | Msa1043180:intron | 30.0% |
| AGATCTCTGATCTAAAAATC+TGG | + | chr7_2:1065924-1065943 | Msa1043180:intron | 30.0% | |
| TGATCTAAAAATCTGGATGT+TGG | + | chr7_2:1065931-1065950 | Msa1043180:intron | 30.0% | |
| !!! | AATTTTTTTGGGTTGATGCA+AGG | + | chr7_2:1066048-1066067 | Msa1043180:intron | 30.0% |
| !!! | AGGTTGGCCTATAATTATTT+TGG | + | chr7_2:1066074-1066093 | Msa1043180:intron | 30.0% |
| TGATGATTCAATCCAGTAAA+TGG | - | chr7_2:1066158-1066177 | None:intergenic | 30.0% | |
| ! | CATCATCAGTCCATTTTATT+CGG | + | chr7_2:1066176-1066195 | Msa1043180:intron | 30.0% |
| ! | AAACAGAGAAGTCTTTTACA+TGG | + | chr7_2:1066219-1066238 | Msa1043180:intron | 30.0% |
| TTACATGGTTGTTTGAAAGT+TGG | + | chr7_2:1066234-1066253 | Msa1043180:intron | 30.0% | |
| ! | CTAAGGTATTTCCTAATACT+CGG | + | chr7_2:1066330-1066349 | Msa1043180:intron | 30.0% |
| ! | TTGAAGATTTTGTGGAAGAT+TGG | + | chr7_2:1066470-1066489 | Msa1043180:intron | 30.0% |
| AAAAAAAATGAATGGCTCCA+AGG | + | chr7_2:1066521-1066540 | Msa1043180:intron | 30.0% | |
| CTCTAATTTCATACAAACCT+TGG | - | chr7_2:1066541-1066560 | None:intergenic | 30.0% | |
| TGTATGAAATTAGAGAGTCA+TGG | + | chr7_2:1066546-1066565 | Msa1043180:intron | 30.0% | |
| !!! | ATATGAAGACCTTTTTTGCT+AGG | + | chr7_2:1066582-1066601 | Msa1043180:intron | 30.0% |
| TGTATTCATCCTAGCAAAAA+AGG | - | chr7_2:1066594-1066613 | None:intergenic | 30.0% | |
| AAGGACAAAATCGAGAAAAA+TGG | + | chr7_2:1066868-1066887 | Msa1043180:intron | 30.0% | |
| AGGACAAAATCGAGAAAAAT+GGG | + | chr7_2:1066869-1066888 | Msa1043180:intron | 30.0% | |
| AGAGTCATATACTGTTTATG+TGG | + | chr7_2:1066933-1066952 | Msa1043180:intron | 30.0% | |
| ATAAAGTTGACAACCACATT+TGG | - | chr7_2:1066977-1066996 | None:intergenic | 30.0% | |
| ATTATGCAGACATATCTTGA+TGG | + | chr7_2:1067011-1067030 | Msa1043180:intron | 30.0% | |
| !!! | TATTTTAAAGCGTTGGACAA+AGG | + | chr7_2:1067073-1067092 | Msa1043180:CDS | 30.0% |
| GCTAATATTGGCATTATATG+TGG | + | chr7_2:1067098-1067117 | Msa1043180:CDS | 30.0% | |
| ! | ATATGTTCTCAGATTTTGCA+AGG | - | chr7_2:1067214-1067233 | None:intergenic | 30.0% |
| ! | TCTTCTTCGGCATATGATTT+TGG | - | chr7_2:1065203-1065222 | None:intergenic | 35.0% |
| CGAAGAAGATAGTCATAACA+TGG | + | chr7_2:1065214-1065233 | Msa1043180:intron | 35.0% | |
| AGAAGATAGTCATAACATGG+AGG | + | chr7_2:1065217-1065236 | Msa1043180:intron | 35.0% | |
| AGTTGAACAGTTTGATCAAG+AGG | + | chr7_2:1065819-1065838 | Msa1043180:intron | 35.0% | |
| GTTGAACAGTTTGATCAAGA+GGG | + | chr7_2:1065820-1065839 | Msa1043180:intron | 35.0% | |
| CAAAGCACAACCGAATAAAA+TGG | - | chr7_2:1066189-1066208 | None:intergenic | 35.0% | |
| GTTGTTTGAAAGTTGGCTAA+TGG | + | chr7_2:1066241-1066260 | Msa1043180:intron | 35.0% | |
| GGAAGATTGGAACCAAATAA+TGG | + | chr7_2:1066483-1066502 | Msa1043180:intron | 35.0% | |
| AGTAAAGTTTGACAAAGCAG+TGG | + | chr7_2:1066687-1066706 | Msa1043180:intron | 35.0% | |
| TTTATGTGGACCTTGATACA+AGG | + | chr7_2:1066947-1066966 | Msa1043180:intron | 35.0% | |
| TTATGTGGACCTTGATACAA+GGG | + | chr7_2:1066948-1066967 | Msa1043180:intron | 35.0% | |
| TGGACAAAGGATGCTAATAT+TGG | + | chr7_2:1067086-1067105 | Msa1043180:CDS | 35.0% | |
| ! | TCTTCTTCGGCATATGATTT+TGG | - | chr7_2:1065203-1065222 | None:intergenic | 35.0% |
| CGAAGAAGATAGTCATAACA+TGG | + | chr7_2:1065214-1065233 | Msa1043180:intron | 35.0% | |
| AGAAGATAGTCATAACATGG+AGG | + | chr7_2:1065217-1065236 | Msa1043180:intron | 35.0% | |
| AGTTGAACAGTTTGATCAAG+AGG | + | chr7_2:1065819-1065838 | Msa1043180:intron | 35.0% | |
| GTTGAACAGTTTGATCAAGA+GGG | + | chr7_2:1065820-1065839 | Msa1043180:intron | 35.0% | |
| CAAAGCACAACCGAATAAAA+TGG | - | chr7_2:1066189-1066208 | None:intergenic | 35.0% | |
| GTTGTTTGAAAGTTGGCTAA+TGG | + | chr7_2:1066241-1066260 | Msa1043180:intron | 35.0% | |
| GGAAGATTGGAACCAAATAA+TGG | + | chr7_2:1066483-1066502 | Msa1043180:intron | 35.0% | |
| AGTAAAGTTTGACAAAGCAG+TGG | + | chr7_2:1066687-1066706 | Msa1043180:intron | 35.0% | |
| TTTATGTGGACCTTGATACA+AGG | + | chr7_2:1066947-1066966 | Msa1043180:intron | 35.0% | |
| TTATGTGGACCTTGATACAA+GGG | + | chr7_2:1066948-1066967 | Msa1043180:intron | 35.0% | |
| TGGACAAAGGATGCTAATAT+TGG | + | chr7_2:1067086-1067105 | Msa1043180:CDS | 35.0% | |
| TCATAACATGGAGGACATAG+AGG | + | chr7_2:1065226-1065245 | Msa1043180:intron | 40.0% | |
| GATCATCTAAGTCATGCTCA+GGG | - | chr7_2:1065405-1065424 | None:intergenic | 40.0% | |
| TGATCATCTAAGTCATGCTC+AGG | - | chr7_2:1065406-1065425 | None:intergenic | 40.0% | |
| AAGCAAAAATGAGGCGCAAA+TGG | + | chr7_2:1065692-1065711 | Msa1043180:CDS | 40.0% | |
| ! | AGGTGCCATAAAAAAATGGG+TGG | + | chr7_2:1065781-1065800 | Msa1043180:intron | 40.0% |
| ! | GGTGCCATAAAAAAATGGGT+GGG | + | chr7_2:1065782-1065801 | Msa1043180:intron | 40.0% |
| GTGCCATAAAAAAATGGGTG+GGG | + | chr7_2:1065783-1065802 | Msa1043180:intron | 40.0% | |
| ! | AAACATTGCAGCGACTTTTC+CGG | - | chr7_2:1065854-1065873 | None:intergenic | 40.0% |
| GCTGCAATGTTTAGCAATGA+AGG | + | chr7_2:1065862-1065881 | Msa1043180:intron | 40.0% | |
| AATCCAGTAAATGGCGCAAA+TGG | - | chr7_2:1066149-1066168 | None:intergenic | 40.0% | |
| TGAAAGTTGGCTAATGGCAA+TGG | + | chr7_2:1066247-1066266 | Msa1043180:intron | 40.0% | |
| GAAAGTTGGCTAATGGCAAT+GGG | + | chr7_2:1066248-1066267 | Msa1043180:intron | 40.0% | |
| GATCAAGATAAGGCAATGTG+CGG | + | chr7_2:1066299-1066318 | Msa1043180:intron | 40.0% | |
| AATGTGCGGAGCAATATCTA+AGG | + | chr7_2:1066313-1066332 | Msa1043180:intron | 40.0% | |
| CATAAACGATGCCGAGTATT+AGG | - | chr7_2:1066344-1066363 | None:intergenic | 40.0% | |
| CTAGGATGAATACAACACAG+AGG | + | chr7_2:1066600-1066619 | Msa1043180:intron | 40.0% | |
| ! | AAAGGTTAGCCACTTCATCA+AGG | + | chr7_2:1066849-1066868 | Msa1043180:intron | 40.0% |
| ! | CGATTTTGTCCTTGATGAAG+TGG | - | chr7_2:1066861-1066880 | None:intergenic | 40.0% |
| TCATAACATGGAGGACATAG+AGG | + | chr7_2:1065226-1065245 | Msa1043180:intron | 40.0% | |
| GATCATCTAAGTCATGCTCA+GGG | - | chr7_2:1065405-1065424 | None:intergenic | 40.0% | |
| TGATCATCTAAGTCATGCTC+AGG | - | chr7_2:1065406-1065425 | None:intergenic | 40.0% | |
| AAGCAAAAATGAGGCGCAAA+TGG | + | chr7_2:1065692-1065711 | Msa1043180:CDS | 40.0% | |
| ! | AGGTGCCATAAAAAAATGGG+TGG | + | chr7_2:1065781-1065800 | Msa1043180:intron | 40.0% |
| ! | GGTGCCATAAAAAAATGGGT+GGG | + | chr7_2:1065782-1065801 | Msa1043180:intron | 40.0% |
| GTGCCATAAAAAAATGGGTG+GGG | + | chr7_2:1065783-1065802 | Msa1043180:intron | 40.0% | |
| ! | AAACATTGCAGCGACTTTTC+CGG | - | chr7_2:1065854-1065873 | None:intergenic | 40.0% |
| GCTGCAATGTTTAGCAATGA+AGG | + | chr7_2:1065862-1065881 | Msa1043180:intron | 40.0% | |
| AATCCAGTAAATGGCGCAAA+TGG | - | chr7_2:1066149-1066168 | None:intergenic | 40.0% | |
| TGAAAGTTGGCTAATGGCAA+TGG | + | chr7_2:1066247-1066266 | Msa1043180:intron | 40.0% | |
| GAAAGTTGGCTAATGGCAAT+GGG | + | chr7_2:1066248-1066267 | Msa1043180:intron | 40.0% | |
| GATCAAGATAAGGCAATGTG+CGG | + | chr7_2:1066299-1066318 | Msa1043180:intron | 40.0% | |
| AATGTGCGGAGCAATATCTA+AGG | + | chr7_2:1066313-1066332 | Msa1043180:intron | 40.0% | |
| CATAAACGATGCCGAGTATT+AGG | - | chr7_2:1066344-1066363 | None:intergenic | 40.0% | |
| CTAGGATGAATACAACACAG+AGG | + | chr7_2:1066600-1066619 | Msa1043180:intron | 40.0% | |
| ! | AAAGGTTAGCCACTTCATCA+AGG | + | chr7_2:1066849-1066868 | Msa1043180:intron | 40.0% |
| ! | CGATTTTGTCCTTGATGAAG+TGG | - | chr7_2:1066861-1066880 | None:intergenic | 40.0% |
| !!! | CTGCCCCACCCATTTTTTTA+TGG | - | chr7_2:1065789-1065808 | None:intergenic | 45.0% |
| ! | ATGCCATTTGCGCCATTTAC+TGG | + | chr7_2:1066143-1066162 | Msa1043180:intron | 45.0% |
| CTCGGCATCGTTTATGTTTG+TGG | + | chr7_2:1066348-1066367 | Msa1043180:intron | 45.0% | |
| TACTACGAAATCTCGCAGTG+TGG | - | chr7_2:1066671-1066690 | None:intergenic | 45.0% | |
| ATTTGGCAGCCCTTGTATCA+AGG | - | chr7_2:1066960-1066979 | None:intergenic | 45.0% | |
| !!! | CTGCCCCACCCATTTTTTTA+TGG | - | chr7_2:1065789-1065808 | None:intergenic | 45.0% |
| ! | ATGCCATTTGCGCCATTTAC+TGG | + | chr7_2:1066143-1066162 | Msa1043180:intron | 45.0% |
| CTCGGCATCGTTTATGTTTG+TGG | + | chr7_2:1066348-1066367 | Msa1043180:intron | 45.0% | |
| TACTACGAAATCTCGCAGTG+TGG | - | chr7_2:1066671-1066690 | None:intergenic | 45.0% | |
| ATTTGGCAGCCCTTGTATCA+AGG | - | chr7_2:1066960-1066979 | None:intergenic | 45.0% | |
| ! | ATTGCAGCGACTTTTCCGGT+AGG | - | chr7_2:1065850-1065869 | None:intergenic | 50.0% |
| !! | TTTGGGTTGATGCAAGGTCG+AGG | + | chr7_2:1066054-1066073 | Msa1043180:intron | 50.0% |
| GTTTCAGGACGAGCTTGCAA+AGG | + | chr7_2:1066831-1066850 | Msa1043180:intron | 50.0% | |
| GATACAAGGGCTGCCAAATG+TGG | + | chr7_2:1066961-1066980 | Msa1043180:intron | 50.0% | |
| ! | ATTGCAGCGACTTTTCCGGT+AGG | - | chr7_2:1065850-1065869 | None:intergenic | 50.0% |
| !! | TTTGGGTTGATGCAAGGTCG+AGG | + | chr7_2:1066054-1066073 | Msa1043180:intron | 50.0% |
| GTTTCAGGACGAGCTTGCAA+AGG | + | chr7_2:1066831-1066850 | Msa1043180:intron | 50.0% | |
| GATACAAGGGCTGCCAAATG+TGG | + | chr7_2:1066961-1066980 | Msa1043180:intron | 50.0% | |
| GATCAAGAGGGCTTGCCTAC+CGG | + | chr7_2:1065832-1065851 | Msa1043180:intron | 55.0% | |
| ! | GGTTGATGCAAGGTCGAGGT+TGG | + | chr7_2:1066058-1066077 | Msa1043180:intron | 55.0% |
| GATCAAGAGGGCTTGCCTAC+CGG | + | chr7_2:1065832-1065851 | Msa1043180:intron | 55.0% | |
| ! | GGTTGATGCAAGGTCGAGGT+TGG | + | chr7_2:1066058-1066077 | Msa1043180:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 1065191 | 1067253 | 1065191 | ID=Msa1043180;Name=Msa1043180 |
| chr7_2 | mRNA | 1065191 | 1067253 | 1065191 | ID=Msa1043180-mRNA-1;Parent=Msa1043180;Name=Msa1043180-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0|0|0.66|0|0.33|3|0|158 |
| chr7_2 | exon | 1065191 | 1065197 | 1065191 | ID=Msa1043180-mRNA-1:exon:178;Parent=Msa1043180-mRNA-1 |
| chr7_2 | exon | 1065518 | 1065753 | 1065518 | ID=Msa1043180-mRNA-1:exon:179;Parent=Msa1043180-mRNA-1 |
| chr7_2 | exon | 1067020 | 1067253 | 1067020 | ID=Msa1043180-mRNA-1:exon:180;Parent=Msa1043180-mRNA-1 |
| chr7_2 | CDS | 1065191 | 1065197 | 1065191 | ID=Msa1043180-mRNA-1:cds;Parent=Msa1043180-mRNA-1 |
| chr7_2 | CDS | 1065518 | 1065753 | 1065518 | ID=Msa1043180-mRNA-1:cds;Parent=Msa1043180-mRNA-1 |
| chr7_2 | CDS | 1067020 | 1067253 | 1067020 | ID=Msa1043180-mRNA-1:cds;Parent=Msa1043180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
