AlfalfaGEDB | Msa1043180

M. sativa cultivar zhongmu-4 / Msa1043180

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1043180	KEH15542.1	73.077	104	17	2	2	94	48	151	3.59e-41	145

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1043180	A0A072TDR2	73.077	104	17	2	2	94	48	151	1.71e-41	145

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TFs/TRs:

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Gene ID	Type	Classification
Msa1043180	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 9 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATCAAGAACTGATTGTA+AGG	0.444776	7_2:+1065651	Msa1043180:CDS
ATATTTGTTTGCTCTAATGC+TGG	0.447741	7_2:+1065559	Msa1043180:CDS
ATTATGCAGACATATCTTGA+TGG	0.397243	7_2:+1067011	Msa1043180:intron
CAATACTCATAATCATGCAA+TGG	0.611156	7_2:+1065732	Msa1043180:CDS
CGCTTTAAAATATATTCATT+TGG	0.310558	7_2:-1067062	None:intergenic
GCTAATATTGGCATTATATG+TGG	0.576264	7_2:+1067098	Msa1043180:CDS
GTATTGTTAAATGTAATGAT+AGG	0.499697	7_2:-1065715	None:intergenic
TGGACAAAGGATGCTAATAT+TGG	0.412634	7_2:+1067086	Msa1043180:CDS
TGTCATTACTATCAACATGT+TGG	0.533945	7_2:-1065582	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATGTTATGACTATCTTCTT+CGG	-	chr7_2:1065216-1065235	None:intergenic	30.0%
ATATTTGTTTGCTCTAATGC+TGG	+	chr7_2:1065559-1065578	Msa1043180:CDS	30.0%
TGTCATTACTATCAACATGT+TGG	-	chr7_2:1065585-1065604	None:intergenic	30.0%
AACATCAAGAACTGATTGTA+AGG	+	chr7_2:1065651-1065670	Msa1043180:CDS	30.0%
CAATACTCATAATCATGCAA+TGG	+	chr7_2:1065732-1065751	Msa1043180:CDS	30.0%
CCTAAGATAGTTTATACTCT+TGG	-	chr7_2:1065764-1065783	None:intergenic	30.0%
AATGTTTAGCAATGAAGGTT+CGG	+	chr7_2:1065867-1065886	Msa1043180:intron	30.0%
AGATCTCTGATCTAAAAATC+TGG	+	chr7_2:1065924-1065943	Msa1043180:intron	30.0%
TGATCTAAAAATCTGGATGT+TGG	+	chr7_2:1065931-1065950	Msa1043180:intron	30.0%
TGATGATTCAATCCAGTAAA+TGG	-	chr7_2:1066158-1066177	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	1065191	1067253	1065191	ID=Msa1043180;Name=Msa1043180
chr7_2	mRNA	1065191	1067253	1065191	ID=Msa1043180-mRNA-1;Parent=Msa1043180;Name=Msa1043180-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0\|0\|0\|0.66\|0\|0.33\|3\|0\|158
chr7_2	exon	1065191	1065197	1065191	ID=Msa1043180-mRNA-1:exon:178;Parent=Msa1043180-mRNA-1
chr7_2	exon	1065518	1065753	1065518	ID=Msa1043180-mRNA-1:exon:179;Parent=Msa1043180-mRNA-1
chr7_2	exon	1067020	1067253	1067020	ID=Msa1043180-mRNA-1:exon:180;Parent=Msa1043180-mRNA-1
chr7_2	CDS	1065191	1065197	1065191	ID=Msa1043180-mRNA-1:cds;Parent=Msa1043180-mRNA-1
chr7_2	CDS	1065518	1065753	1065518	ID=Msa1043180-mRNA-1:cds;Parent=Msa1043180-mRNA-1
chr7_2	CDS	1067020	1067253	1067020	ID=Msa1043180-mRNA-1:cds;Parent=Msa1043180-mRNA-1

Gene Sequence

>Msa1043180

ATGGAAAGTTTTGGAATTCATACACGTTCAACTAAGACAAATTTGTGCATATTTGTTTGCTCTAATGCTGGCCAACATGTTGATAGTAATGACAAAGAAGAAAGCAATGCAATCACAGTAAAAAGCAAAAAAAGATGTTCAACATCAAGAACTGATTGTAAGGCAACACTTGTAGTTTCAAAAGCAAAAATGAGGCGCAAATGGCCTATCATTACATTTAACAATACTCATAATCATGCAATGACATATCTTGATGGTTTTCAATCAAAAAATATTATTGAAATTCCAAATGAATATATTTTAAAGCGTTGGACAAAGGATGCTAATATTGGCATTATATGTGGTGTTAATGAAAACAATTCAGTACGTGAGAGTACTAAATCAGCAACTCTTCGAAGTATGCATGTGCTTAGTCAAGCAAGTTTATTATCTGACCTTGCAAAATCTGAGAACATATATGAGTTTATATCTCCATAG

Protein sequence

>Msa1043180

MESFGIHTRSTKTNLCIFVCSNAGQHVDSNDKEESNAITVKSKKRCSTSRTDCKATLVVSKAKMRRKWPIITFNNTHNHAMTYLDGFQSKNIIEIPNEYILKRWTKDANIGIICGVNENNSVRESTKSATLRSMHVLSQASLLSDLAKSENIYEFISP*