Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043560 | XP_024631067.1 | 75.000 | 156 | 23 | 3 | 2 | 153 | 121 | 264 | 4.77e-55 | 184 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043560 | sp|Q9M2B4|ALFL3_ARATH | 56.954 | 151 | 43 | 3 | 2 | 152 | 121 | 249 | 3.50e-48 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043560 | A0A1S3U4Q8 | 65.789 | 152 | 34 | 4 | 2 | 152 | 116 | 250 | 2.29e-56 | 186 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1043560 | TF | Alfin-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043560 | MtrunA17_Chr1g0150821 | 66.667 | 156 | 35 | 2 | 2 | 153 | 121 | 263 | 2.06e-58 | 182 |
| Msa1043560 | MtrunA17_Chr8g0343441 | 64.706 | 153 | 37 | 3 | 2 | 153 | 120 | 256 | 1.18e-49 | 159 |
| Msa1043560 | MtrunA17_Chr2g0300241 | 56.494 | 154 | 42 | 3 | 2 | 153 | 123 | 253 | 6.50e-46 | 150 |
| Msa1043560 | MtrunA17_Chr2g0329821 | 61.184 | 152 | 41 | 3 | 2 | 152 | 116 | 250 | 5.80e-42 | 140 |
| Msa1043560 | MtrunA17_Chr4g0076771 | 50.658 | 152 | 56 | 4 | 2 | 152 | 121 | 254 | 2.09e-39 | 133 |
| Msa1043560 | MtrunA17_Chr4g0006381 | 47.712 | 153 | 53 | 5 | 1 | 153 | 117 | 242 | 7.56e-33 | 116 |
| Msa1043560 | MtrunA17_Chr7g0242511 | 43.791 | 153 | 59 | 5 | 2 | 153 | 116 | 242 | 3.80e-30 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043560 | AT5G20510.2 | 57.516 | 153 | 51 | 2 | 2 | 153 | 80 | 219 | 3.14e-49 | 157 |
| Msa1043560 | AT3G42790.1 | 56.954 | 151 | 43 | 3 | 2 | 152 | 121 | 249 | 3.55e-49 | 159 |
| Msa1043560 | AT5G20510.1 | 57.516 | 153 | 51 | 2 | 2 | 153 | 121 | 260 | 8.89e-49 | 158 |
| Msa1043560 | AT5G26210.1 | 58.940 | 151 | 46 | 2 | 2 | 152 | 120 | 254 | 7.41e-41 | 137 |
| Msa1043560 | AT2G02470.1 | 50.658 | 152 | 60 | 4 | 2 | 153 | 120 | 256 | 6.00e-39 | 132 |
| Msa1043560 | AT2G02470.2 | 50.658 | 152 | 51 | 4 | 2 | 153 | 120 | 247 | 6.13e-39 | 132 |
| Msa1043560 | AT5G05610.2 | 44.737 | 152 | 55 | 4 | 2 | 152 | 117 | 240 | 2.10e-33 | 118 |
| Msa1043560 | AT5G05610.1 | 44.737 | 152 | 55 | 4 | 2 | 152 | 117 | 240 | 2.10e-33 | 118 |
| Msa1043560 | AT3G11200.1 | 44.371 | 151 | 60 | 4 | 2 | 152 | 119 | 245 | 4.27e-33 | 117 |
| Msa1043560 | AT3G11200.2 | 44.371 | 151 | 60 | 4 | 2 | 152 | 106 | 232 | 5.48e-33 | 117 |
| Msa1043560 | AT1G14510.1 | 48.993 | 149 | 56 | 4 | 2 | 150 | 120 | 248 | 1.16e-32 | 116 |
Find 32 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGCATTGCCATTGATAT+TGG | 0.306155 | 7_2:-1768360 | None:intergenic |
| CTTAGAGTTTGATTTGGATT+TGG | 0.307586 | 7_2:-1767746 | None:intergenic |
| GGCAATGCAAATGAAGTTAA+AGG | 0.322830 | 7_2:+1768371 | Msa1043560:CDS |
| GCTATGCAGCTGATGAGTTC+TGG | 0.348702 | 7_2:+1768469 | Msa1043560:CDS |
| ACAATCTTTGAAGCTGTTGC+AGG | 0.355548 | 7_2:+1767670 | Msa1043560:CDS |
| ATTTGTGAGAAATCGTTTCA+TGG | 0.364470 | 7_2:+1768504 | Msa1043560:CDS |
| TTGATATGCTCAGCCCTTGC+CGG | 0.375496 | 7_2:-1768546 | None:intergenic |
| TCTTACCTTAGAGTTTGATT+TGG | 0.384520 | 7_2:-1767752 | None:intergenic |
| TTTGAAGCTGTTGCAGGGTC+TGG | 0.385521 | 7_2:+1767676 | Msa1043560:CDS |
| CAAATCCAAATCAAACTCTA+AGG | 0.411797 | 7_2:+1767747 | Msa1043560:CDS |
| GCAACAGCTTCAAAGATTGT+TGG | 0.414898 | 7_2:-1767667 | None:intergenic |
| GTTAAAGGACGAGGAGGTTG+AGG | 0.415516 | 7_2:+1768386 | Msa1043560:CDS |
| TAGCAAATTATTAACATCAA+TGG | 0.454579 | 7_2:-1767802 | None:intergenic |
| TTATTAACATCAATGGATAG+TGG | 0.466987 | 7_2:-1767795 | None:intergenic |
| GCTCTCTTGTTGCTGCAAGC+TGG | 0.467608 | 7_2:-1768582 | None:intergenic |
| CGTGAAGATTACACCGGCAA+GGG | 0.539345 | 7_2:+1768533 | Msa1043560:CDS |
| GCAGGGTCTGGTAGCAAACA+AGG | 0.540889 | 7_2:+1767688 | Msa1043560:CDS |
| AAGGACGAGGAGGTTGAGGA+TGG | 0.556879 | 7_2:+1768390 | Msa1043560:CDS |
| CAATCTTTGAAGCTGTTGCA+GGG | 0.574674 | 7_2:+1767671 | Msa1043560:CDS |
| GTCTGGTAGCAAACAAGGAA+AGG | 0.575473 | 7_2:+1767693 | Msa1043560:CDS |
| GGTTGAGGATGGTGTAGGTG+TGG | 0.578977 | 7_2:+1768401 | Msa1043560:CDS |
| GAGGAGGTTGAGGATGGTGT+AGG | 0.579309 | 7_2:+1768396 | Msa1043560:CDS |
| GCGTGAAGATTACACCGGCA+AGG | 0.599177 | 7_2:+1768532 | Msa1043560:CDS |
| GAGACTTTGTGTGGGGCATG+TGG | 0.613065 | 7_2:+1768441 | Msa1043560:CDS |
| GCAAATGAAGTTAAAGGACG+AGG | 0.616669 | 7_2:+1768377 | Msa1043560:CDS |
| AACACGGAGAGACTTTGTGT+GGG | 0.622939 | 7_2:+1768433 | Msa1043560:CDS |
| GGATGGTGTAGGTGTGGACG+AGG | 0.628142 | 7_2:+1768407 | Msa1043560:CDS |
| GAACACGGAGAGACTTTGTG+TGG | 0.630911 | 7_2:+1768432 | Msa1043560:CDS |
| ACACGGAGAGACTTTGTGTG+GGG | 0.707279 | 7_2:+1768434 | Msa1043560:CDS |
| AATGAAGTTAAAGGACGAGG+AGG | 0.713570 | 7_2:+1768380 | Msa1043560:CDS |
| GGTGTGGACGAGGAAGAACA+CGG | 0.729144 | 7_2:+1768417 | Msa1043560:CDS |
| AAAATGCGTGAAGATTACAC+CGG | 0.768073 | 7_2:+1768527 | Msa1043560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACATTACATTTTTTTTAAT+TGG | - | chr7_2:1764589-1764608 | None:intergenic | 10.0% |
| !!! | AAATGTAATGTAATTTTTTT+AGG | + | chr7_2:1764597-1764616 | Msa1043560:intron | 10.0% |
| !!! | TCATATATTAATGTTTTATA+CGG | - | chr7_2:1764693-1764712 | None:intergenic | 10.0% |
| !! | ATTAATATATGAATAATGTA+TGG | + | chr7_2:1764701-1764720 | Msa1043560:intron | 10.0% |
| !! | AGTACATATTTAATTATTAA+GGG | - | chr7_2:1765014-1765033 | None:intergenic | 10.0% |
| !! | TAGTACATATTTAATTATTA+AGG | - | chr7_2:1765015-1765034 | None:intergenic | 10.0% |
| !!! | ATGAATTTATTTTTCTTAAA+TGG | - | chr7_2:1765097-1765116 | None:intergenic | 10.0% |
| !! | CTTTATAATTTAAATATCAA+TGG | + | chr7_2:1765119-1765138 | Msa1043560:intron | 10.0% |
| !! | TTACTAAATACAATAAAATA+TGG | - | chr7_2:1765210-1765229 | None:intergenic | 10.0% |
| !!! | TTGTTTCATATTTTATAATA+GGG | + | chr7_2:1765252-1765271 | Msa1043560:intron | 10.0% |
| !! | TTACAAAAAAAATAAGATAA+AGG | - | chr7_2:1766496-1766515 | None:intergenic | 10.0% |
| !!! | TTATTTTTTTTGTAACAATT+TGG | + | chr7_2:1766501-1766520 | Msa1043560:intron | 10.0% |
| !! | TTAATAAAAAAATGAGAAAA+AGG | + | chr7_2:1767068-1767087 | Msa1043560:intron | 10.0% |
| !!! | TTAATTTTTCATAACTAGTA+AGG | + | chr7_2:1764638-1764657 | Msa1043560:intron | 15.0% |
| !!! | ATGTATATTTTAACATAAGA+GGG | - | chr7_2:1764926-1764945 | None:intergenic | 15.0% |
| !!! | AATGTATATTTTAACATAAG+AGG | - | chr7_2:1764927-1764946 | None:intergenic | 15.0% |
| !!! | AGATTTTATTTTTAAAAGGA+GGG | - | chr7_2:1764951-1764970 | None:intergenic | 15.0% |
| !!! | TAGATTTTATTTTTAAAAGG+AGG | - | chr7_2:1764952-1764971 | None:intergenic | 15.0% |
| !!! | GTGTAGATTTTATTTTTAAA+AGG | - | chr7_2:1764955-1764974 | None:intergenic | 15.0% |
| !!! | AATTTATTTTTCTTAAATGG+TGG | - | chr7_2:1765094-1765113 | None:intergenic | 15.0% |
| !!! | GTTGTTTCATATTTTATAAT+AGG | + | chr7_2:1765251-1765270 | Msa1043560:intron | 15.0% |
| !!! | AAGAAATTTTATGAATGTAA+CGG | + | chr7_2:1766342-1766361 | Msa1043560:intron | 15.0% |
| !! | TGAACAACTAAATATAATTA+AGG | + | chr7_2:1766452-1766471 | Msa1043560:intron | 15.0% |
| !! | TAACATTAATTCATGATATT+TGG | + | chr7_2:1766935-1766954 | Msa1043560:intron | 15.0% |
| !! | GTTACAAATAAATAAGATAA+AGG | + | chr7_2:1767158-1767177 | Msa1043560:intron | 15.0% |
| !!! | TATGCATATTACATTTTGAT+TGG | - | chr7_2:1764784-1764803 | None:intergenic | 20.0% |
| !! | AAAAGTTCATCTTAATCATA+AGG | + | chr7_2:1764851-1764870 | Msa1043560:intron | 20.0% |
| !!! | TGTATATTTTAACATAAGAG+GGG | - | chr7_2:1764925-1764944 | None:intergenic | 20.0% |
| !! | TATTTAATTATTAAGGGAGA+GGG | - | chr7_2:1765008-1765027 | None:intergenic | 20.0% |
| !! | ATATTTAATTATTAAGGGAG+AGG | - | chr7_2:1765009-1765028 | None:intergenic | 20.0% |
| !!! | TTATTTTTGCTAGATTATTG+AGG | + | chr7_2:1765394-1765413 | Msa1043560:intron | 20.0% |
| !!! | GAAATGTTTTCTAATATGTT+TGG | + | chr7_2:1765487-1765506 | Msa1043560:intron | 20.0% |
| !!! | AGTGTATATTTTAACATAAC+AGG | + | chr7_2:1765526-1765545 | Msa1043560:intron | 20.0% |
| !!! | GTGTATATTTTAACATAACA+GGG | + | chr7_2:1765527-1765546 | Msa1043560:intron | 20.0% |
| !!! | TGTATATTTTAACATAACAG+GGG | + | chr7_2:1765528-1765547 | Msa1043560:intron | 20.0% |
| !! | TAAAGAAGAAATTTGAATGA+AGG | - | chr7_2:1765775-1765794 | None:intergenic | 20.0% |
| !! | CAAAATTGAACAATCAAAAT+GGG | - | chr7_2:1766316-1766335 | None:intergenic | 20.0% |
| !! | ACAAAATTGAACAATCAAAA+TGG | - | chr7_2:1766315-1766334 | None:intergenic | 20.0% |
| !!! | CTTTTTGATTTGATTTTTCT+TGG | - | chr7_2:1766176-1766195 | None:intergenic | 20.0% |
| !! | ACAAAATTGAACAATCAAAA+TGG | + | chr7_2:1766315-1766334 | Msa1043560:intron | 20.0% |
| !! | CAAAATTGAACAATCAAAAT+GGG | + | chr7_2:1766316-1766335 | Msa1043560:intron | 20.0% |
| !!! | ATCTTTATTTTTTTCCGTTA+AGG | - | chr7_2:1767125-1767144 | None:intergenic | 20.0% |
| !! | ACGGAAAAAAATAAAGATAA+AGG | + | chr7_2:1767127-1767146 | Msa1043560:intron | 20.0% |
| !! | CTTATTTATTTGTAACACTT+TGG | - | chr7_2:1767154-1767173 | None:intergenic | 20.0% |
| !! | TATAGACAAGATTACATTAT+AGG | - | chr7_2:1767185-1767204 | None:intergenic | 20.0% |
| !! | AATCAAAATGTAGTATACAT+TGG | - | chr7_2:1767300-1767319 | None:intergenic | 20.0% |
| !!! | AATGTATACTACATTTTGAT+TGG | + | chr7_2:1767299-1767318 | Msa1043560:intron | 20.0% |
| !! | TAGCAAATTATTAACATCAA+TGG | - | chr7_2:1767805-1767824 | None:intergenic | 20.0% |
| !!! | ATTGATGTTAATAATTTGCT+AGG | + | chr7_2:1767804-1767823 | Msa1043560:intron | 20.0% |
| !!! | TGTAATTTTTTTAGGCAAAG+TGG | + | chr7_2:1764605-1764624 | Msa1043560:intron | 25.0% |
| !! | TCCAGTAGGTTAATTTTATT+TGG | - | chr7_2:1764664-1764683 | None:intergenic | 25.0% |
| !! | GATTGGTTAATATTATGAGA+GGG | - | chr7_2:1764767-1764786 | None:intergenic | 25.0% |
| !! | TGATTGGTTAATATTATGAG+AGG | - | chr7_2:1764768-1764787 | None:intergenic | 25.0% |
| ! | TGTAATTCAAGCTTCTATTA+AGG | + | chr7_2:1765455-1765474 | Msa1043560:intron | 25.0% |
| ! | GTAATTCAAGCTTCTATTAA+GGG | + | chr7_2:1765456-1765475 | Msa1043560:intron | 25.0% |
| !! | TCTAATATGTTTGGAATAAG+AGG | + | chr7_2:1765496-1765515 | Msa1043560:intron | 25.0% |
| !! | CTAATATGTTTGGAATAAGA+GGG | + | chr7_2:1765497-1765516 | Msa1043560:intron | 25.0% |
| !! | TAATATGTTTGGAATAAGAG+GGG | + | chr7_2:1765498-1765517 | Msa1043560:intron | 25.0% |
| ! | TGTAATTCAAGAATCTTTGA+GGG | + | chr7_2:1765558-1765577 | Msa1043560:intron | 25.0% |
| ! | TACATCAAATTTCTTTCATC+TGG | + | chr7_2:1765673-1765692 | Msa1043560:intron | 25.0% |
| ! | GAATGTAAGTGATGAATTTA+AGG | - | chr7_2:1765703-1765722 | None:intergenic | 25.0% |
| ! | GAAACAAGAATTGATCAATA+GGG | - | chr7_2:1765803-1765822 | None:intergenic | 25.0% |
| ! | AGAAACAAGAATTGATCAAT+AGG | - | chr7_2:1765804-1765823 | None:intergenic | 25.0% |
| ! | AAGTCATCTGTTATACTTTA+AGG | - | chr7_2:1766123-1766142 | None:intergenic | 25.0% |
| !!! | GAATGTAACGGATAAATTTA+AGG | + | chr7_2:1766354-1766373 | Msa1043560:intron | 25.0% |
| ! | AATTAAGGCAAGATTACATT+TGG | + | chr7_2:1766467-1766486 | Msa1043560:intron | 25.0% |
| ! | ATTAAGGCAAGATTACATTT+GGG | + | chr7_2:1766468-1766487 | Msa1043560:intron | 25.0% |
| !!! | ATCTTTATTTTTTCCCGTTT+AGG | + | chr7_2:1766530-1766549 | Msa1043560:intron | 25.0% |
| ! | AAAAATTCAGAAATGTTGCA+AGG | + | chr7_2:1766649-1766668 | Msa1043560:intron | 25.0% |
| ! | TACAAAAGTTAAGATTGTTC+CGG | + | chr7_2:1766713-1766732 | Msa1043560:intron | 25.0% |
| !!! | TTTGGGTTTATTTTTATGCT+GGG | + | chr7_2:1766771-1766790 | Msa1043560:intron | 25.0% |
| !! | ATCTCTTTTCTATAGAGTTT+TGG | + | chr7_2:1766879-1766898 | Msa1043560:intron | 25.0% |
| ! | TGTGTTTAAAAGAAGATTTG+AGG | + | chr7_2:1766906-1766925 | Msa1043560:intron | 25.0% |
| ! | TGAGATATAAAAGACCTTAA+CGG | + | chr7_2:1767108-1767127 | Msa1043560:intron | 25.0% |
| !!! | TTTTGGTTTTTCTGTATGAA+AGG | + | chr7_2:1767412-1767431 | Msa1043560:intron | 25.0% |
| ! | TTATTAACATCAATGGATAG+TGG | - | chr7_2:1767798-1767817 | None:intergenic | 25.0% |
| ! | GTCATTTAATCTTGATTGAA+AGG | - | chr7_2:1767964-1767983 | None:intergenic | 25.0% |
| ! | TTTATAGTTCAAGAACGTAT+CGG | + | chr7_2:1768169-1768188 | Msa1043560:intron | 25.0% |
| ! | GTTTGGTATTTAATCAGTTA+AGG | + | chr7_2:1768275-1768294 | Msa1043560:intron | 25.0% |
| !!! | GATATTGGTTTTGAAAACTT+TGG | - | chr7_2:1768348-1768367 | None:intergenic | 25.0% |
| !! | GTTTTCAAAACCAATATCAA+TGG | + | chr7_2:1768350-1768369 | Msa1043560:CDS | 25.0% |
| GCCAAATAAAATTAACCTAC+TGG | + | chr7_2:1764660-1764679 | Msa1043560:intron | 30.0% | |
| !!! | TATTTTAACATAAGAGGGGA+GGG | - | chr7_2:1764921-1764940 | None:intergenic | 30.0% |
| !!! | ATATTTTAACATAAGAGGGG+AGG | - | chr7_2:1764922-1764941 | None:intergenic | 30.0% |
| TTGTAATTCAAGCATCTTAG+AGG | - | chr7_2:1764985-1765004 | None:intergenic | 30.0% | |
| !! | ACACTTAAAAAAAGTACTGC+GGG | - | chr7_2:1765358-1765377 | None:intergenic | 30.0% |
| !! | CACACTTAAAAAAAGTACTG+CGG | - | chr7_2:1765359-1765378 | None:intergenic | 30.0% |
| !!! | ATATTTTAACATAACAGGGG+AGG | + | chr7_2:1765531-1765550 | Msa1043560:intron | 30.0% |
| !!! | TATTTTAACATAACAGGGGA+GGG | + | chr7_2:1765532-1765551 | Msa1043560:intron | 30.0% |
| GTGTAATTCAAGAATCTTTG+AGG | + | chr7_2:1765557-1765576 | Msa1043560:intron | 30.0% | |
| GTAATTCAAGAATCTTTGAG+GGG | + | chr7_2:1765559-1765578 | Msa1043560:intron | 30.0% | |
| !! | ATGTTTTTGTTCTCACGTTT+GGG | - | chr7_2:1765750-1765769 | None:intergenic | 30.0% |
| ! | AATTTGAAACTGTAGCAGTT+TGG | - | chr7_2:1765868-1765887 | None:intergenic | 30.0% |
| ! | GTTAGCAGATTTTATTAGGT+TGG | - | chr7_2:1765956-1765975 | None:intergenic | 30.0% |
| !! | GTTCTTTTGTTTGGACTTAA+AGG | - | chr7_2:1766010-1766029 | None:intergenic | 30.0% |
| !!! | GAGTTTGCTAGCATTTTTTT+CGG | - | chr7_2:1766066-1766085 | None:intergenic | 30.0% |
| !! | TTTGATTTTTCTTGGTTGTG+AGG | - | chr7_2:1766168-1766187 | None:intergenic | 30.0% |
| CTCACGAAAATTGAAAAATG+CGG | + | chr7_2:1766280-1766299 | Msa1043560:intron | 30.0% | |
| TTAAGGCAAGATTACATTTG+GGG | + | chr7_2:1766469-1766488 | Msa1043560:intron | 30.0% | |
| !! | TGTGCTTTTAAGAGAGATAA+AGG | - | chr7_2:1766557-1766576 | None:intergenic | 30.0% |
| !!! | CACATCAATTTTGTTGTTTC+CGG | - | chr7_2:1766735-1766754 | None:intergenic | 30.0% |
| !!! | CTTTGGGTTTATTTTTATGC+TGG | + | chr7_2:1766770-1766789 | Msa1043560:intron | 30.0% |
| GAAGATTCAAAGAAAGAAGA+TGG | + | chr7_2:1767001-1767020 | Msa1043560:intron | 30.0% | |
| GAACATCTTCATCATATTTC+TGG | + | chr7_2:1767031-1767050 | Msa1043560:intron | 30.0% | |
| ! | TTTGATTGGTTGATATCATG+AGG | + | chr7_2:1767313-1767332 | Msa1043560:intron | 30.0% |
| ! | TTGATTGGTTGATATCATGA+GGG | + | chr7_2:1767314-1767333 | Msa1043560:intron | 30.0% |
| AAATACCCTCTAAATAAGAG+AGG | + | chr7_2:1767340-1767359 | Msa1043560:intron | 30.0% | |
| AATACCCTCTAAATAAGAGA+GGG | + | chr7_2:1767341-1767360 | Msa1043560:intron | 30.0% | |
| ! | ATTACCCTCTCTTATTTAGA+GGG | - | chr7_2:1767348-1767367 | None:intergenic | 30.0% |
| CTGAAAGGAAAGAAACAATA+AGG | - | chr7_2:1767471-1767490 | None:intergenic | 30.0% | |
| GTTTCTTTCCTTTCAGTAAA+AGG | + | chr7_2:1767475-1767494 | Msa1043560:intron | 30.0% | |
| ! | AAGATACTCCTTTTACTGAA+AGG | - | chr7_2:1767486-1767505 | None:intergenic | 30.0% |
| TCTTGCTAATACAGAGAATT+AGG | - | chr7_2:1767514-1767533 | None:intergenic | 30.0% | |
| !! | AACAAACTTTTGAGAGGAAA+GGG | - | chr7_2:1767543-1767562 | None:intergenic | 30.0% |
| !!! | ATTTTTTCGCCATTCATTGA+TGG | + | chr7_2:1767581-1767600 | Msa1043560:intron | 30.0% |
| !! | CTTAGAGTTTGATTTGGATT+TGG | - | chr7_2:1767749-1767768 | None:intergenic | 30.0% |
| CAAATCCAAATCAAACTCTA+AGG | + | chr7_2:1767747-1767766 | Msa1043560:CDS | 30.0% | |
| TCTTACCTTAGAGTTTGATT+TGG | - | chr7_2:1767755-1767774 | None:intergenic | 30.0% | |
| ! | AGTCGCATAATATGTTGTTT+AGG | + | chr7_2:1767839-1767858 | Msa1043560:intron | 30.0% |
| !!! | CGAAAGTGAAAAGTATTTTG+AGG | + | chr7_2:1767880-1767899 | Msa1043560:intron | 30.0% |
| ! | CAAATCTGAAGTCATAATGT+GGG | - | chr7_2:1767986-1768005 | None:intergenic | 30.0% |
| ! | TCAAATCTGAAGTCATAATG+TGG | - | chr7_2:1767987-1768006 | None:intergenic | 30.0% |
| GATTAAATACCAAACCAATC+AGG | - | chr7_2:1768270-1768289 | None:intergenic | 30.0% | |
| ATTTGCATTGCCATTGATAT+TGG | - | chr7_2:1768363-1768382 | None:intergenic | 30.0% | |
| ATTTGTGAGAAATCGTTTCA+TGG | + | chr7_2:1768504-1768523 | Msa1043560:CDS | 30.0% | |
| TTCTTGCTGAATTGAGTAGA+TGG | + | chr7_2:1764398-1764417 | Msa1043560:intron | 35.0% | |
| CTGAATTGAGTAGATGGATA+CGG | + | chr7_2:1764404-1764423 | Msa1043560:intron | 35.0% | |
| TTATACGGTTCATATCCAGT+AGG | - | chr7_2:1764678-1764697 | None:intergenic | 35.0% | |
| !! | ATTTTAACATAAGAGGGGAG+GGG | - | chr7_2:1764920-1764939 | None:intergenic | 35.0% |
| ATTCAAGCTTCTATTAAGGG+AGG | + | chr7_2:1765459-1765478 | Msa1043560:intron | 35.0% | |
| TTCAAGCTTCTATTAAGGGA+GGG | + | chr7_2:1765460-1765479 | Msa1043560:intron | 35.0% | |
| !! | ATTTTAACATAACAGGGGAG+GGG | + | chr7_2:1765533-1765552 | Msa1043560:intron | 35.0% |
| !! | TGTTTTTGTTCTCACGTTTG+GGG | - | chr7_2:1765749-1765768 | None:intergenic | 35.0% |
| !! | GATGTTTTTGTTCTCACGTT+TGG | - | chr7_2:1765751-1765770 | None:intergenic | 35.0% |
| ! | GCGTGTTAGCAGATTTTATT+AGG | - | chr7_2:1765960-1765979 | None:intergenic | 35.0% |
| TTGTTTGGACTTAAAGGCTT+TGG | - | chr7_2:1766004-1766023 | None:intergenic | 35.0% | |
| ! | GAGGCTTTTGTTCTTTTGTT+TGG | - | chr7_2:1766019-1766038 | None:intergenic | 35.0% |
| GTTGAAATGGTTATGTCATG+AGG | - | chr7_2:1766038-1766057 | None:intergenic | 35.0% | |
| !! | TTTTTCGGTTGCTGTTGAAA+TGG | - | chr7_2:1766051-1766070 | None:intergenic | 35.0% |
| !! | TGTTGCTGTTGTGATGTTTT+GGG | - | chr7_2:1766088-1766107 | None:intergenic | 35.0% |
| ! | ATACTTTAAGGATTGCTAGC+AGG | - | chr7_2:1766111-1766130 | None:intergenic | 35.0% |
| !! | TGACGTGGTTCTGAAAATAA+CGG | + | chr7_2:1766216-1766235 | Msa1043560:intron | 35.0% |
| ! | ATTAGTTTACACGACAAGAC+TGG | - | chr7_2:1766426-1766445 | None:intergenic | 35.0% |
| AGAGAGATAAAGGACCTAAA+CGG | - | chr7_2:1766547-1766566 | None:intergenic | 35.0% | |
| AATTCAGAAATGTTGCAAGG+CGG | + | chr7_2:1766652-1766671 | Msa1043560:intron | 35.0% | |
| ! | TGATTGGTTGATATCATGAG+GGG | + | chr7_2:1767315-1767334 | Msa1043560:intron | 35.0% |
| ! | GATTACCCTCTCTTATTTAG+AGG | - | chr7_2:1767349-1767368 | None:intergenic | 35.0% |
| GCATGTCGATGTATACATTA+TGG | - | chr7_2:1767381-1767400 | None:intergenic | 35.0% | |
| ! | ACATGCTACACATAAGCTTT+TGG | + | chr7_2:1767395-1767414 | Msa1043560:intron | 35.0% |
| !! | CAACAAACTTTTGAGAGGAA+AGG | - | chr7_2:1767544-1767563 | None:intergenic | 35.0% |
| CTTTCCTCTCAAAAGTTTGT+TGG | + | chr7_2:1767542-1767561 | Msa1043560:intron | 35.0% | |
| GAAAGCAAACCATCAATGAA+TGG | - | chr7_2:1767593-1767612 | None:intergenic | 35.0% | |
| !! | CAAGATGGTAGTTAATTTGC+AGG | + | chr7_2:1767614-1767633 | Msa1043560:intron | 35.0% |
| CTTGACCATAAATATCCAGA+CGG | - | chr7_2:1767921-1767940 | None:intergenic | 35.0% | |
| TTGCTCCAAAAACAAGGATT+CGG | - | chr7_2:1768141-1768160 | None:intergenic | 35.0% | |
| ACTTTCTTGCTCCAAAAACA+AGG | - | chr7_2:1768147-1768166 | None:intergenic | 35.0% | |
| TGACCATATATCCCTGTTTA+TGG | + | chr7_2:1768208-1768227 | Msa1043560:intron | 35.0% | |
| ! | GTTAAGGCTGTTATCTCTTT+TGG | + | chr7_2:1768291-1768310 | Msa1043560:intron | 35.0% |
| !!! | GGTTTTGAAAACTTTGGTTG+AGG | - | chr7_2:1768342-1768361 | None:intergenic | 35.0% |
| GGCAATGCAAATGAAGTTAA+AGG | + | chr7_2:1768371-1768390 | Msa1043560:CDS | 35.0% | |
| AAAATGCGTGAAGATTACAC+CGG | + | chr7_2:1768527-1768546 | Msa1043560:CDS | 35.0% | |
| GTAGATGGATACGGAAGTTA+AGG | + | chr7_2:1764413-1764432 | Msa1043560:intron | 40.0% | |
| ATGGATACGGAAGTTAAGGT+TGG | + | chr7_2:1764417-1764436 | Msa1043560:intron | 40.0% | |
| TGGATACGGAAGTTAAGGTT+GGG | + | chr7_2:1764418-1764437 | Msa1043560:intron | 40.0% | |
| ! | TACGTTACCCTCTCTTGTTT+AGG | + | chr7_2:1764731-1764750 | Msa1043560:intron | 40.0% |
| ! | ACGTTACCCTCTCTTGTTTA+GGG | + | chr7_2:1764732-1764751 | Msa1043560:intron | 40.0% |
| ATTACCCCCTAAACAAGAGA+GGG | - | chr7_2:1764741-1764760 | None:intergenic | 40.0% | |
| AATTACCCCCTAAACAAGAG+AGG | - | chr7_2:1764742-1764761 | None:intergenic | 40.0% | |
| TTCAAGCATCTTAGAGGAAG+AGG | - | chr7_2:1764979-1764998 | None:intergenic | 40.0% | |
| TCAAGCTTCTATTAAGGGAG+GGG | + | chr7_2:1765461-1765480 | Msa1043560:intron | 40.0% | |
| ! | TATGTTTGGAATAAGAGGGG+AGG | + | chr7_2:1765501-1765520 | Msa1043560:intron | 40.0% |
| ! | ATGTTTGGAATAAGAGGGGA+GGG | + | chr7_2:1765502-1765521 | Msa1043560:intron | 40.0% |
| ! | TAAAGGCTTTGGCTGATAGT+GGG | - | chr7_2:1765993-1766012 | None:intergenic | 40.0% |
| ! | TTAAAGGCTTTGGCTGATAG+TGG | - | chr7_2:1765994-1766013 | None:intergenic | 40.0% |
| !! | GTGTTGCTGTTGTGATGTTT+TGG | - | chr7_2:1766089-1766108 | None:intergenic | 40.0% |
| TTTCAGAACCACGTCAGATA+TGG | - | chr7_2:1766212-1766231 | None:intergenic | 40.0% | |
| GAGAGATAAAGGACCTAAAC+GGG | - | chr7_2:1766546-1766565 | None:intergenic | 40.0% | |
| ! | TGCAAAGCTGCTCTAAACTT+TGG | + | chr7_2:1766753-1766772 | Msa1043560:intron | 40.0% |
| ! | GCAAAGCTGCTCTAAACTTT+GGG | + | chr7_2:1766754-1766773 | Msa1043560:intron | 40.0% |
| ! | GATTGGTTGATATCATGAGG+GGG | + | chr7_2:1767316-1767335 | Msa1043560:intron | 40.0% |
| ! | ACTGCCAACAAACTTTTGAG+AGG | - | chr7_2:1767549-1767568 | None:intergenic | 40.0% |
| !! | GATGGTTTGCTTTCTCAAGA+TGG | + | chr7_2:1767599-1767618 | Msa1043560:intron | 40.0% |
| GCAACAGCTTCAAAGATTGT+TGG | - | chr7_2:1767670-1767689 | None:intergenic | 40.0% | |
| !! | ACAATCTTTGAAGCTGTTGC+AGG | + | chr7_2:1767670-1767689 | Msa1043560:CDS | 40.0% |
| !! | CAATCTTTGAAGCTGTTGCA+GGG | + | chr7_2:1767671-1767690 | Msa1043560:CDS | 40.0% |
| TGAAAGGTTATCAGAGAGTG+CGG | - | chr7_2:1767948-1767967 | None:intergenic | 40.0% | |
| !! | TAGTCTAGTTTGCTTGACTG+TGG | + | chr7_2:1768085-1768104 | Msa1043560:intron | 40.0% |
| !!! | GAGATCCGAATCCTTGTTTT+TGG | + | chr7_2:1768133-1768152 | Msa1043560:intron | 40.0% |
| ! | ACTTTCTAGCGCCATAAACA+GGG | - | chr7_2:1768222-1768241 | None:intergenic | 40.0% |
| GAATCTGTCTGTTTCCTGAT+TGG | + | chr7_2:1768253-1768272 | Msa1043560:intron | 40.0% | |
| ! | TGTCTGTTTCCTGATTGGTT+TGG | + | chr7_2:1768258-1768277 | Msa1043560:intron | 40.0% |
| GCAAATGAAGTTAAAGGACG+AGG | + | chr7_2:1768377-1768396 | Msa1043560:CDS | 40.0% | |
| AATGAAGTTAAAGGACGAGG+AGG | + | chr7_2:1768380-1768399 | Msa1043560:CDS | 40.0% | |
| ! | CGGAAGTTAAGGTTGGGTTT+TGG | + | chr7_2:1764424-1764443 | Msa1043560:intron | 45.0% |
| ! | CGTTACCCTCTCTTGTTTAG+GGG | + | chr7_2:1764733-1764752 | Msa1043560:intron | 45.0% |
| ! | GTTACCCTCTCTTGTTTAGG+GGG | + | chr7_2:1764734-1764753 | Msa1043560:intron | 45.0% |
| ! | TGTTTGGAATAAGAGGGGAG+GGG | + | chr7_2:1765503-1765522 | Msa1043560:intron | 45.0% |
| !! | GTTGTTTCTAGAACTGCGTC+AGG | + | chr7_2:1765903-1765922 | Msa1043560:intron | 45.0% |
| TCAACTCACCATATCTGACG+TGG | + | chr7_2:1766201-1766220 | Msa1043560:intron | 45.0% | |
| GTCTGGTAGCAAACAAGGAA+AGG | + | chr7_2:1767693-1767712 | Msa1043560:CDS | 45.0% | |
| CATAAATATCCAGACGGCAG+GGG | - | chr7_2:1767915-1767934 | None:intergenic | 45.0% | |
| CCATAAATATCCAGACGGCA+GGG | - | chr7_2:1767916-1767935 | None:intergenic | 45.0% | |
| ACCATAAATATCCAGACGGC+AGG | - | chr7_2:1767917-1767936 | None:intergenic | 45.0% | |
| ATGTGTGAATCCTTTGCTGC+TGG | + | chr7_2:1768111-1768130 | Msa1043560:intron | 45.0% | |
| GCGCCATAAACAGGGATATA+TGG | - | chr7_2:1768214-1768233 | None:intergenic | 45.0% | |
| ! | GACTTTCTAGCGCCATAAAC+AGG | - | chr7_2:1768223-1768242 | None:intergenic | 45.0% |
| AACACGGAGAGACTTTGTGT+GGG | + | chr7_2:1768433-1768452 | Msa1043560:CDS | 45.0% | |
| !!! | ATTATTGTAATTTTATTTTT+TGG | + | chr7_2:1765229-1765248 | Msa1043560:intron | 5.0% |
| !!! | TCTTTTATTTAATTATATTA+AGG | + | chr7_2:1765599-1765618 | Msa1043560:intron | 5.0% |
| !! | TAGAAAATAATAATAATATA+CGG | + | chr7_2:1766808-1766827 | Msa1043560:intron | 5.0% |
| !!! | TAAAAAAAAAAATCAATTTT+AGG | - | chr7_2:1767239-1767258 | None:intergenic | 5.0% |
| ! | TCACGTTTGGGGTTGTGGAA+TGG | - | chr7_2:1765738-1765757 | None:intergenic | 50.0% |
| ! | TGTTCTCACGTTTGGGGTTG+TGG | - | chr7_2:1765743-1765762 | None:intergenic | 50.0% |
| CAGAAATGTTGCAAGGCGGA+TGG | + | chr7_2:1766656-1766675 | Msa1043560:intron | 50.0% | |
| AAATGTTGCAAGGCGGATGG+TGG | + | chr7_2:1766659-1766678 | Msa1043560:intron | 50.0% | |
| ! | TTTGAAGCTGTTGCAGGGTC+TGG | + | chr7_2:1767676-1767695 | Msa1043560:CDS | 50.0% |
| AATTTAGATCCCCTGCCGTC+TGG | + | chr7_2:1767903-1767922 | Msa1043560:intron | 50.0% | |
| CCCTGCCGTCTGGATATTTA+TGG | + | chr7_2:1767913-1767932 | Msa1043560:intron | 50.0% | |
| ATTCGGATCTCCAGCAGCAA+AGG | - | chr7_2:1768124-1768143 | None:intergenic | 50.0% | |
| GTTAAAGGACGAGGAGGTTG+AGG | + | chr7_2:1768386-1768405 | Msa1043560:CDS | 50.0% | |
| GAACACGGAGAGACTTTGTG+TGG | + | chr7_2:1768432-1768451 | Msa1043560:CDS | 50.0% | |
| ACACGGAGAGACTTTGTGTG+GGG | + | chr7_2:1768434-1768453 | Msa1043560:CDS | 50.0% | |
| GCTATGCAGCTGATGAGTTC+TGG | + | chr7_2:1768469-1768488 | Msa1043560:CDS | 50.0% | |
| CGTGAAGATTACACCGGCAA+GGG | + | chr7_2:1768533-1768552 | Msa1043560:CDS | 50.0% | |
| TTGATATGCTCAGCCCTTGC+CGG | - | chr7_2:1768549-1768568 | None:intergenic | 50.0% | |
| !! | GCTTTGGCTGATAGTGGGAC+AGG | - | chr7_2:1765988-1766007 | None:intergenic | 55.0% |
| !! | GATGGTGGAGGCTTAGTCAC+TGG | + | chr7_2:1766674-1766693 | Msa1043560:intron | 55.0% |
| AGGCTTAGTCACTGGCGGAA+GGG | + | chr7_2:1766682-1766701 | Msa1043560:intron | 55.0% | |
| TAGTCACTGGCGGAAGGGTT+AGG | + | chr7_2:1766687-1766706 | Msa1043560:intron | 55.0% | |
| GCAGGGTCTGGTAGCAAACA+AGG | + | chr7_2:1767688-1767707 | Msa1043560:CDS | 55.0% | |
| AAGGACGAGGAGGTTGAGGA+TGG | + | chr7_2:1768390-1768409 | Msa1043560:CDS | 55.0% | |
| GAGGAGGTTGAGGATGGTGT+AGG | + | chr7_2:1768396-1768415 | Msa1043560:CDS | 55.0% | |
| GGTTGAGGATGGTGTAGGTG+TGG | + | chr7_2:1768401-1768420 | Msa1043560:CDS | 55.0% | |
| GGTGTGGACGAGGAAGAACA+CGG | + | chr7_2:1768417-1768436 | Msa1043560:CDS | 55.0% | |
| GAGACTTTGTGTGGGGCATG+TGG | + | chr7_2:1768441-1768460 | Msa1043560:CDS | 55.0% | |
| GCGTGAAGATTACACCGGCA+AGG | + | chr7_2:1768532-1768551 | Msa1043560:CDS | 55.0% | |
| GCTCTCTTGTTGCTGCAAGC+TGG | - | chr7_2:1768585-1768604 | None:intergenic | 55.0% | |
| ! | TGTTGCAAGGCGGATGGTGG+AGG | + | chr7_2:1766662-1766681 | Msa1043560:intron | 60.0% |
| GGTGGAGGCTTAGTCACTGG+CGG | + | chr7_2:1766677-1766696 | Msa1043560:intron | 60.0% | |
| GAGGCTTAGTCACTGGCGGA+AGG | + | chr7_2:1766681-1766700 | Msa1043560:intron | 60.0% | |
| GGATGGTGTAGGTGTGGACG+AGG | + | chr7_2:1768407-1768426 | Msa1043560:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 1764353 | 1768614 | 1764353 | ID=Msa1043560;Name=Msa1043560 |
| chr7_2 | mRNA | 1764353 | 1768614 | 1764353 | ID=Msa1043560-mRNA-1;Parent=Msa1043560;Name=Msa1043560-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|0.66|0.5|0.33|3|0|153 |
| chr7_2 | exon | 1764353 | 1764357 | 1764353 | ID=Msa1043560-mRNA-1:exon:330;Parent=Msa1043560-mRNA-1 |
| chr7_2 | exon | 1767636 | 1767809 | 1767636 | ID=Msa1043560-mRNA-1:exon:331;Parent=Msa1043560-mRNA-1 |
| chr7_2 | exon | 1768332 | 1768614 | 1768332 | ID=Msa1043560-mRNA-1:exon:332;Parent=Msa1043560-mRNA-1 |
| chr7_2 | CDS | 1764353 | 1764357 | 1764353 | ID=Msa1043560-mRNA-1:cds;Parent=Msa1043560-mRNA-1 |
| chr7_2 | CDS | 1767636 | 1767809 | 1767636 | ID=Msa1043560-mRNA-1:cds;Parent=Msa1043560-mRNA-1 |
| chr7_2 | CDS | 1768332 | 1768614 | 1768332 | ID=Msa1043560-mRNA-1:cds;Parent=Msa1043560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
