Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043940 | RHN49479.1 | 70.233 | 215 | 49 | 2 | 1 | 208 | 1 | 207 | 3.75e-98 | 294 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043940 | sp|Q52QH4|NAC68_ORYSJ | 29.665 | 209 | 121 | 10 | 11 | 206 | 27 | 222 | 7.55e-15 | 75.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043940 | A0A396H881 | 70.233 | 215 | 49 | 2 | 1 | 208 | 1 | 207 | 1.79e-98 | 294 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1043940 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043940 | MtrunA17_Chr7g0274971 | 70.233 | 215 | 49 | 2 | 1 | 208 | 1 | 207 | 3.45e-102 | 294 |
| Msa1043940 | MtrunA17_Chr1g0168571 | 57.921 | 202 | 70 | 2 | 1 | 202 | 1 | 187 | 9.84e-76 | 231 |
| Msa1043940 | MtrunA17_Chr1g0174911 | 53.521 | 213 | 67 | 5 | 1 | 210 | 1 | 184 | 9.74e-66 | 205 |
| Msa1043940 | MtrunA17_Chr7g0263931 | 35.032 | 157 | 87 | 5 | 11 | 159 | 17 | 166 | 2.14e-19 | 84.7 |
| Msa1043940 | MtrunA17_Chr7g0214071 | 32.099 | 162 | 98 | 4 | 11 | 170 | 21 | 172 | 1.86e-18 | 80.9 |
| Msa1043940 | MtrunA17_Chr2g0326361 | 30.088 | 226 | 118 | 9 | 11 | 203 | 20 | 238 | 4.88e-15 | 72.4 |
| Msa1043940 | MtrunA17_Chr4g0047841 | 34.109 | 129 | 76 | 4 | 11 | 137 | 21 | 142 | 5.45e-14 | 69.7 |
| Msa1043940 | MtrunA17_Chr2g0318101 | 28.125 | 192 | 100 | 7 | 11 | 187 | 21 | 189 | 1.87e-13 | 68.2 |
| Msa1043940 | MtrunA17_Chr8g0384721 | 32.161 | 199 | 108 | 10 | 11 | 193 | 13 | 200 | 2.51e-13 | 67.4 |
| Msa1043940 | MtrunA17_Chr4g0042561 | 30.968 | 155 | 90 | 6 | 11 | 157 | 15 | 160 | 7.66e-13 | 65.9 |
| Msa1043940 | MtrunA17_Chr8g0372121 | 29.032 | 186 | 114 | 8 | 11 | 193 | 12 | 182 | 2.05e-12 | 64.7 |
| Msa1043940 | MtrunA17_Chr3g0130101 | 31.250 | 160 | 97 | 8 | 11 | 165 | 13 | 164 | 5.90e-12 | 63.9 |
| Msa1043940 | MtrunA17_Chr3g0139331 | 27.517 | 149 | 99 | 3 | 11 | 157 | 17 | 158 | 6.09e-12 | 63.5 |
| Msa1043940 | MtrunA17_Chr5g0417001 | 29.444 | 180 | 105 | 7 | 11 | 184 | 20 | 183 | 6.45e-12 | 63.9 |
| Msa1043940 | MtrunA17_Chr1g0200561 | 29.032 | 155 | 100 | 6 | 11 | 163 | 25 | 171 | 1.33e-11 | 62.8 |
| Msa1043940 | MtrunA17_Chr3g0092671 | 30.061 | 163 | 101 | 6 | 11 | 168 | 11 | 165 | 1.54e-11 | 62.8 |
| Msa1043940 | MtrunA17_Chr6g0461661 | 31.694 | 183 | 104 | 8 | 11 | 185 | 24 | 193 | 1.58e-11 | 62.8 |
| Msa1043940 | MtrunA17_Chr3g0091921 | 34.591 | 159 | 82 | 10 | 11 | 159 | 22 | 168 | 4.88e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043940 | AT5G62380.2 | 32.895 | 152 | 93 | 6 | 11 | 159 | 13 | 158 | 1.55e-15 | 74.3 |
| Msa1043940 | AT5G62380.1 | 32.895 | 152 | 93 | 6 | 11 | 159 | 13 | 158 | 1.55e-15 | 74.3 |
| Msa1043940 | AT3G15510.1 | 28.723 | 188 | 105 | 7 | 11 | 182 | 23 | 197 | 1.97e-15 | 74.3 |
| Msa1043940 | AT5G13180.1 | 33.784 | 148 | 85 | 5 | 11 | 155 | 20 | 157 | 2.58e-15 | 72.8 |
| Msa1043940 | AT2G33480.2 | 32.877 | 146 | 84 | 5 | 11 | 154 | 21 | 154 | 1.01e-13 | 68.6 |
| Msa1043940 | AT1G77450.1 | 31.579 | 152 | 87 | 6 | 11 | 155 | 16 | 157 | 1.55e-13 | 67.8 |
| Msa1043940 | AT3G15170.1 | 31.333 | 150 | 90 | 5 | 11 | 154 | 26 | 168 | 2.98e-12 | 64.7 |
| Msa1043940 | AT3G10480.1 | 33.962 | 159 | 82 | 9 | 11 | 158 | 33 | 179 | 3.40e-12 | 65.1 |
| Msa1043940 | AT3G61910.1 | 25.962 | 208 | 122 | 9 | 11 | 192 | 17 | 218 | 3.99e-12 | 64.7 |
| Msa1043940 | AT3G04070.2 | 31.677 | 161 | 89 | 8 | 11 | 157 | 16 | 169 | 4.01e-12 | 64.7 |
| Msa1043940 | AT4G36160.1 | 30.864 | 162 | 100 | 7 | 11 | 167 | 16 | 170 | 5.07e-12 | 64.3 |
| Msa1043940 | AT4G36160.3 | 30.864 | 162 | 100 | 7 | 11 | 167 | 16 | 170 | 5.07e-12 | 64.3 |
| Msa1043940 | AT4G36160.2 | 30.864 | 162 | 100 | 7 | 11 | 167 | 20 | 174 | 5.17e-12 | 64.3 |
| Msa1043940 | AT3G10480.2 | 33.766 | 154 | 88 | 8 | 11 | 158 | 33 | 178 | 7.53e-12 | 63.9 |
| Msa1043940 | AT1G32770.1 | 32.099 | 162 | 89 | 7 | 11 | 157 | 22 | 177 | 1.24e-11 | 63.2 |
| Msa1043940 | AT2G24430.2 | 28.667 | 150 | 97 | 4 | 11 | 157 | 22 | 164 | 4.78e-11 | 61.2 |
| Msa1043940 | AT2G24430.1 | 28.667 | 150 | 97 | 4 | 11 | 157 | 22 | 164 | 4.78e-11 | 61.2 |
| Msa1043940 | AT1G61110.1 | 30.588 | 170 | 93 | 8 | 11 | 163 | 22 | 183 | 4.78e-11 | 61.2 |
| Msa1043940 | AT3G04060.1 | 30.220 | 182 | 106 | 10 | 11 | 180 | 26 | 198 | 5.50e-11 | 61.2 |
| Msa1043940 | AT1G01720.1 | 32.911 | 158 | 76 | 9 | 11 | 154 | 13 | 154 | 5.61e-11 | 60.8 |
| Msa1043940 | AT1G71930.2 | 28.481 | 158 | 101 | 8 | 11 | 164 | 15 | 164 | 6.46e-11 | 60.8 |
| Msa1043940 | AT1G71930.1 | 28.481 | 158 | 101 | 8 | 11 | 164 | 15 | 164 | 6.46e-11 | 60.8 |
Find 37 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCTTGAATATGATTTATT+TGG | 0.182094 | 7_2:+2101365 | Msa1043940:CDS |
| CAAAGAATCCTTGGGAGATT+TGG | 0.196255 | 7_2:+2101393 | Msa1043940:CDS |
| AGTGGGAGATTTCTTCTTTA+AGG | 0.222616 | 7_2:-2101471 | None:intergenic |
| GTAAGTTACCATACTATAAT+TGG | 0.294675 | 7_2:+2102084 | Msa1043940:CDS |
| AAAGAATCCTTGGGAGATTT+GGG | 0.318962 | 7_2:+2101394 | Msa1043940:CDS |
| CAAGGAAAGACAGTTGTTTC+CGG | 0.324971 | 7_2:+2102039 | Msa1043940:CDS |
| TTGATTCGTACAATTGGAAT+TGG | 0.348604 | 7_2:+2101503 | Msa1043940:CDS |
| TTCAAGAACATTGATATAGT+TGG | 0.354618 | 7_2:-2101351 | None:intergenic |
| TCATCAAGTGAGAATTTGAT+TGG | 0.398760 | 7_2:-2101996 | None:intergenic |
| ATTAGTAGCCAATTATAGTA+TGG | 0.403838 | 7_2:-2102092 | None:intergenic |
| AAACGCTTGATTCGTACAAT+TGG | 0.407900 | 7_2:+2101497 | Msa1043940:CDS |
| TTGGTATCACAAAGAATCCT+TGG | 0.412757 | 7_2:+2101384 | Msa1043940:CDS |
| ATCTTTGATTAACAATGCTT+CGG | 0.415664 | 7_2:+2101670 | Msa1043940:CDS |
| TCAAGAACATTGATATAGTT+GGG | 0.434618 | 7_2:-2101350 | None:intergenic |
| AGTATGGTAACTTACAGATA+TGG | 0.443956 | 7_2:-2102076 | None:intergenic |
| TCTGCATAGAACATAATTGC+TGG | 0.484592 | 7_2:-2101920 | None:intergenic |
| ACGAATCAAGCGTTTACTAG+TGG | 0.496910 | 7_2:-2101489 | None:intergenic |
| TGGTATCACAAAGAATCCTT+GGG | 0.502644 | 7_2:+2101385 | Msa1043940:CDS |
| AATTGTAAACTTTATTGTAG+AGG | 0.517878 | 7_2:-2101319 | None:intergenic |
| AAGAGTAACACTTCTGAAGA+TGG | 0.525582 | 7_2:+2101614 | Msa1043940:CDS |
| AGTATAGTTGACAAAGAGAC+TGG | 0.529604 | 7_2:+2101554 | Msa1043940:CDS |
| TCTCACTTGATGAATAGCAT+TGG | 0.540753 | 7_2:+2102006 | Msa1043940:CDS |
| AACTCTTCCCAAATCTCCCA+AGG | 0.556547 | 7_2:-2101401 | None:intergenic |
| CGAATCAAGCGTTTACTAGT+GGG | 0.567217 | 7_2:-2101488 | None:intergenic |
| CGAAGAAGTTCACCATCTGA+AGG | 0.571056 | 7_2:-2101290 | None:intergenic |
| AAAGAGACTGGCCAAACCCT+AGG | 0.583006 | 7_2:+2101566 | Msa1043940:CDS |
| GACAGTTGTTTCCGGACCTG+CGG | 0.583589 | 7_2:+2102047 | Msa1043940:CDS |
| ACACTTCTGAAGATGGTGGA+TGG | 0.587791 | 7_2:+2101621 | Msa1043940:CDS |
| ACATTGATATAGTTGGGCAC+TGG | 0.596165 | 7_2:-2101344 | None:intergenic |
| TGTTAATCAAAGATATGTCA+AGG | 0.619881 | 7_2:-2101661 | None:intergenic |
| GTACAATTGGAATTGGTACG+TGG | 0.632001 | 7_2:+2101510 | Msa1043940:CDS |
| AGTAACACTTCTGAAGATGG+TGG | 0.632536 | 7_2:+2101617 | Msa1043940:CDS |
| AAGTGTTACTCTTCTCAAAG+CGG | 0.648652 | 7_2:-2101604 | None:intergenic |
| AGCATTGGACACGATAGGCA+AGG | 0.655461 | 7_2:+2102021 | Msa1043940:CDS |
| TACAATTGGAATTGGTACGT+GGG | 0.659468 | 7_2:+2101511 | Msa1043940:CDS |
| ACGTGGGAAGCTGAAGACAC+CGG | 0.664319 | 7_2:+2101527 | Msa1043940:CDS |
| TGAATAGCATTGGACACGAT+AGG | 0.665350 | 7_2:+2102016 | Msa1043940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTCTTTTTTCTGTATTTTT+TGG | - | chr7_2:2101970-2101989 | None:intergenic | 15.0% |
| !!! | ATTCTTTTTTCTGTATTTTT+TGG | - | chr7_2:2101970-2101989 | None:intergenic | 15.0% |
| !! | AATTGTAAACTTTATTGTAG+AGG | - | chr7_2:2101322-2101341 | None:intergenic | 20.0% |
| !! | GTTCTTGAATATGATTTATT+TGG | + | chr7_2:2101365-2101384 | Msa1043940:CDS | 20.0% |
| !! | AACCAAAAAAATAATTCATG+AGG | - | chr7_2:2101761-2101780 | None:intergenic | 20.0% |
| !! | TAAACTTAGTATTTAAACGT+TGG | - | chr7_2:2101793-2101812 | None:intergenic | 20.0% |
| !! | ATACTAAGTTTATCCTAATT+AGG | + | chr7_2:2101801-2101820 | Msa1043940:intron | 20.0% |
| !! | TACTAAGTTTATCCTAATTA+GGG | + | chr7_2:2101802-2101821 | Msa1043940:intron | 20.0% |
| !! | TAAAAGTTACAATTATTCCT+TGG | + | chr7_2:2101853-2101872 | Msa1043940:intron | 20.0% |
| !!! | TTTTCTGTATTTTTTGGATT+GGG | - | chr7_2:2101964-2101983 | None:intergenic | 20.0% |
| !!! | TTTTTCTGTATTTTTTGGAT+TGG | - | chr7_2:2101965-2101984 | None:intergenic | 20.0% |
| !! | AATTGTAAACTTTATTGTAG+AGG | - | chr7_2:2101322-2101341 | None:intergenic | 20.0% |
| !! | GTTCTTGAATATGATTTATT+TGG | + | chr7_2:2101365-2101384 | Msa1043940:CDS | 20.0% |
| !! | AACCAAAAAAATAATTCATG+AGG | - | chr7_2:2101761-2101780 | None:intergenic | 20.0% |
| !! | TAAACTTAGTATTTAAACGT+TGG | - | chr7_2:2101793-2101812 | None:intergenic | 20.0% |
| !! | ATACTAAGTTTATCCTAATT+AGG | + | chr7_2:2101801-2101820 | Msa1043940:intron | 20.0% |
| !! | TACTAAGTTTATCCTAATTA+GGG | + | chr7_2:2101802-2101821 | Msa1043940:intron | 20.0% |
| !! | TAAAAGTTACAATTATTCCT+TGG | + | chr7_2:2101853-2101872 | Msa1043940:intron | 20.0% |
| !!! | TTTTCTGTATTTTTTGGATT+GGG | - | chr7_2:2101964-2101983 | None:intergenic | 20.0% |
| !!! | TTTTTCTGTATTTTTTGGAT+TGG | - | chr7_2:2101965-2101984 | None:intergenic | 20.0% |
| ! | AAAAATTTCAAACCTTCAGA+TGG | + | chr7_2:2101278-2101297 | Msa1043940:CDS | 25.0% |
| ! | TCAAGAACATTGATATAGTT+GGG | - | chr7_2:2101353-2101372 | None:intergenic | 25.0% |
| ! | TTCAAGAACATTGATATAGT+TGG | - | chr7_2:2101354-2101373 | None:intergenic | 25.0% |
| !!! | TTTGTCAACTATACTTTTTC+CGG | - | chr7_2:2101549-2101568 | None:intergenic | 25.0% |
| ! | TGTTAATCAAAGATATGTCA+AGG | - | chr7_2:2101664-2101683 | None:intergenic | 25.0% |
| ! | ATCTTTGATTAACAATGCTT+CGG | + | chr7_2:2101670-2101689 | Msa1043940:CDS | 25.0% |
| ! | AAAAATAATTCATGAGGTGA+GGG | - | chr7_2:2101755-2101774 | None:intergenic | 25.0% |
| ! | AAAAAATAATTCATGAGGTG+AGG | - | chr7_2:2101756-2101775 | None:intergenic | 25.0% |
| !!! | CACCTCATGAATTATTTTTT+TGG | + | chr7_2:2101756-2101775 | Msa1043940:intron | 25.0% |
| ! | GTAAGTTACCATACTATAAT+TGG | + | chr7_2:2102084-2102103 | Msa1043940:CDS | 25.0% |
| ! | AAAAATTTCAAACCTTCAGA+TGG | + | chr7_2:2101278-2101297 | Msa1043940:CDS | 25.0% |
| ! | TCAAGAACATTGATATAGTT+GGG | - | chr7_2:2101353-2101372 | None:intergenic | 25.0% |
| ! | TTCAAGAACATTGATATAGT+TGG | - | chr7_2:2101354-2101373 | None:intergenic | 25.0% |
| !!! | TTTGTCAACTATACTTTTTC+CGG | - | chr7_2:2101549-2101568 | None:intergenic | 25.0% |
| ! | TGTTAATCAAAGATATGTCA+AGG | - | chr7_2:2101664-2101683 | None:intergenic | 25.0% |
| ! | ATCTTTGATTAACAATGCTT+CGG | + | chr7_2:2101670-2101689 | Msa1043940:CDS | 25.0% |
| ! | AAAAATAATTCATGAGGTGA+GGG | - | chr7_2:2101755-2101774 | None:intergenic | 25.0% |
| ! | AAAAAATAATTCATGAGGTG+AGG | - | chr7_2:2101756-2101775 | None:intergenic | 25.0% |
| !!! | CACCTCATGAATTATTTTTT+TGG | + | chr7_2:2101756-2101775 | Msa1043940:intron | 25.0% |
| ! | GTAAGTTACCATACTATAAT+TGG | + | chr7_2:2102084-2102103 | Msa1043940:CDS | 25.0% |
| ! | TTGATTCGTACAATTGGAAT+TGG | + | chr7_2:2101503-2101522 | Msa1043940:CDS | 30.0% |
| !!! | GAAACGTTTTTTTAGTCCTA+GGG | - | chr7_2:2101585-2101604 | None:intergenic | 30.0% |
| CCAGAAAATAAACCCTAATT+AGG | - | chr7_2:2101817-2101836 | None:intergenic | 30.0% | |
| !! | CCTAATTAGGGTTTATTTTC+TGG | + | chr7_2:2101814-2101833 | Msa1043940:intron | 30.0% |
| TAAATATGTGCACAATACCA+AGG | - | chr7_2:2101873-2101892 | None:intergenic | 30.0% | |
| TCATCAAGTGAGAATTTGAT+TGG | - | chr7_2:2101999-2102018 | None:intergenic | 30.0% | |
| AGTATGGTAACTTACAGATA+TGG | - | chr7_2:2102079-2102098 | None:intergenic | 30.0% | |
| ! | TTGATTCGTACAATTGGAAT+TGG | + | chr7_2:2101503-2101522 | Msa1043940:CDS | 30.0% |
| !!! | GAAACGTTTTTTTAGTCCTA+GGG | - | chr7_2:2101585-2101604 | None:intergenic | 30.0% |
| CCAGAAAATAAACCCTAATT+AGG | - | chr7_2:2101817-2101836 | None:intergenic | 30.0% | |
| !! | CCTAATTAGGGTTTATTTTC+TGG | + | chr7_2:2101814-2101833 | Msa1043940:intron | 30.0% |
| TAAATATGTGCACAATACCA+AGG | - | chr7_2:2101873-2101892 | None:intergenic | 30.0% | |
| TCATCAAGTGAGAATTTGAT+TGG | - | chr7_2:2101999-2102018 | None:intergenic | 30.0% | |
| AGTATGGTAACTTACAGATA+TGG | - | chr7_2:2102079-2102098 | None:intergenic | 30.0% | |
| TTGGTATCACAAAGAATCCT+TGG | + | chr7_2:2101384-2101403 | Msa1043940:CDS | 35.0% | |
| TGGTATCACAAAGAATCCTT+GGG | + | chr7_2:2101385-2101404 | Msa1043940:CDS | 35.0% | |
| AAAGAATCCTTGGGAGATTT+GGG | + | chr7_2:2101394-2101413 | Msa1043940:CDS | 35.0% | |
| AGTGGGAGATTTCTTCTTTA+AGG | - | chr7_2:2101474-2101493 | None:intergenic | 35.0% | |
| ! | AAACGCTTGATTCGTACAAT+TGG | + | chr7_2:2101497-2101516 | Msa1043940:CDS | 35.0% |
| TACAATTGGAATTGGTACGT+GGG | + | chr7_2:2101511-2101530 | Msa1043940:CDS | 35.0% | |
| AGTATAGTTGACAAAGAGAC+TGG | + | chr7_2:2101554-2101573 | Msa1043940:CDS | 35.0% | |
| !!! | GTTTTTTTAGTCCTAGGGTT+TGG | - | chr7_2:2101580-2101599 | None:intergenic | 35.0% |
| !!! | GGAAACGTTTTTTTAGTCCT+AGG | - | chr7_2:2101586-2101605 | None:intergenic | 35.0% |
| ! | AAGTGTTACTCTTCTCAAAG+CGG | - | chr7_2:2101607-2101626 | None:intergenic | 35.0% |
| ! | AAGAGTAACACTTCTGAAGA+TGG | + | chr7_2:2101614-2101633 | Msa1043940:CDS | 35.0% |
| TCTGCATAGAACATAATTGC+TGG | - | chr7_2:2101923-2101942 | None:intergenic | 35.0% | |
| TCTCACTTGATGAATAGCAT+TGG | + | chr7_2:2102006-2102025 | Msa1043940:CDS | 35.0% | |
| TTGGTATCACAAAGAATCCT+TGG | + | chr7_2:2101384-2101403 | Msa1043940:CDS | 35.0% | |
| TGGTATCACAAAGAATCCTT+GGG | + | chr7_2:2101385-2101404 | Msa1043940:CDS | 35.0% | |
| AAAGAATCCTTGGGAGATTT+GGG | + | chr7_2:2101394-2101413 | Msa1043940:CDS | 35.0% | |
| AGTGGGAGATTTCTTCTTTA+AGG | - | chr7_2:2101474-2101493 | None:intergenic | 35.0% | |
| ! | AAACGCTTGATTCGTACAAT+TGG | + | chr7_2:2101497-2101516 | Msa1043940:CDS | 35.0% |
| TACAATTGGAATTGGTACGT+GGG | + | chr7_2:2101511-2101530 | Msa1043940:CDS | 35.0% | |
| AGTATAGTTGACAAAGAGAC+TGG | + | chr7_2:2101554-2101573 | Msa1043940:CDS | 35.0% | |
| !!! | GTTTTTTTAGTCCTAGGGTT+TGG | - | chr7_2:2101580-2101599 | None:intergenic | 35.0% |
| !!! | GGAAACGTTTTTTTAGTCCT+AGG | - | chr7_2:2101586-2101605 | None:intergenic | 35.0% |
| ! | AAGTGTTACTCTTCTCAAAG+CGG | - | chr7_2:2101607-2101626 | None:intergenic | 35.0% |
| ! | AAGAGTAACACTTCTGAAGA+TGG | + | chr7_2:2101614-2101633 | Msa1043940:CDS | 35.0% |
| TCTGCATAGAACATAATTGC+TGG | - | chr7_2:2101923-2101942 | None:intergenic | 35.0% | |
| TCTCACTTGATGAATAGCAT+TGG | + | chr7_2:2102006-2102025 | Msa1043940:CDS | 35.0% | |
| ACATTGATATAGTTGGGCAC+TGG | - | chr7_2:2101347-2101366 | None:intergenic | 40.0% | |
| CAAAGAATCCTTGGGAGATT+TGG | + | chr7_2:2101393-2101412 | Msa1043940:CDS | 40.0% | |
| CGAATCAAGCGTTTACTAGT+GGG | - | chr7_2:2101491-2101510 | None:intergenic | 40.0% | |
| ACGAATCAAGCGTTTACTAG+TGG | - | chr7_2:2101492-2101511 | None:intergenic | 40.0% | |
| GTACAATTGGAATTGGTACG+TGG | + | chr7_2:2101510-2101529 | Msa1043940:CDS | 40.0% | |
| ! | AGTAACACTTCTGAAGATGG+TGG | + | chr7_2:2101617-2101636 | Msa1043940:CDS | 40.0% |
| AATAATTCATGAGGTGAGGG+TGG | - | chr7_2:2101752-2101771 | None:intergenic | 40.0% | |
| !!! | CTGCTTTTGCGTTTTTTTGC+AGG | + | chr7_2:2101897-2101916 | Msa1043940:intron | 40.0% |
| ! | TGAATAGCATTGGACACGAT+AGG | + | chr7_2:2102016-2102035 | Msa1043940:CDS | 40.0% |
| ! | CAAGGAAAGACAGTTGTTTC+CGG | + | chr7_2:2102039-2102058 | Msa1043940:CDS | 40.0% |
| ACATTGATATAGTTGGGCAC+TGG | - | chr7_2:2101347-2101366 | None:intergenic | 40.0% | |
| CAAAGAATCCTTGGGAGATT+TGG | + | chr7_2:2101393-2101412 | Msa1043940:CDS | 40.0% | |
| CGAATCAAGCGTTTACTAGT+GGG | - | chr7_2:2101491-2101510 | None:intergenic | 40.0% | |
| ACGAATCAAGCGTTTACTAG+TGG | - | chr7_2:2101492-2101511 | None:intergenic | 40.0% | |
| GTACAATTGGAATTGGTACG+TGG | + | chr7_2:2101510-2101529 | Msa1043940:CDS | 40.0% | |
| ! | AGTAACACTTCTGAAGATGG+TGG | + | chr7_2:2101617-2101636 | Msa1043940:CDS | 40.0% |
| AATAATTCATGAGGTGAGGG+TGG | - | chr7_2:2101752-2101771 | None:intergenic | 40.0% | |
| !!! | CTGCTTTTGCGTTTTTTTGC+AGG | + | chr7_2:2101897-2101916 | Msa1043940:intron | 40.0% |
| ! | TGAATAGCATTGGACACGAT+AGG | + | chr7_2:2102016-2102035 | Msa1043940:CDS | 40.0% |
| ! | CAAGGAAAGACAGTTGTTTC+CGG | + | chr7_2:2102039-2102058 | Msa1043940:CDS | 40.0% |
| CGAAGAAGTTCACCATCTGA+AGG | - | chr7_2:2101293-2101312 | None:intergenic | 45.0% | |
| AACTCTTCCCAAATCTCCCA+AGG | - | chr7_2:2101404-2101423 | None:intergenic | 45.0% | |
| !! | ACACTTCTGAAGATGGTGGA+TGG | + | chr7_2:2101621-2101640 | Msa1043940:CDS | 45.0% |
| CGAAGAAGTTCACCATCTGA+AGG | - | chr7_2:2101293-2101312 | None:intergenic | 45.0% | |
| AACTCTTCCCAAATCTCCCA+AGG | - | chr7_2:2101404-2101423 | None:intergenic | 45.0% | |
| !! | ACACTTCTGAAGATGGTGGA+TGG | + | chr7_2:2101621-2101640 | Msa1043940:CDS | 45.0% |
| ! | AAAGAGACTGGCCAAACCCT+AGG | + | chr7_2:2101566-2101585 | Msa1043940:CDS | 50.0% |
| ! | AGCATTGGACACGATAGGCA+AGG | + | chr7_2:2102021-2102040 | Msa1043940:CDS | 50.0% |
| ! | ACAGATATGGCGTTTTCCGC+AGG | - | chr7_2:2102066-2102085 | None:intergenic | 50.0% |
| ! | AAAGAGACTGGCCAAACCCT+AGG | + | chr7_2:2101566-2101585 | Msa1043940:CDS | 50.0% |
| ! | AGCATTGGACACGATAGGCA+AGG | + | chr7_2:2102021-2102040 | Msa1043940:CDS | 50.0% |
| ! | ACAGATATGGCGTTTTCCGC+AGG | - | chr7_2:2102066-2102085 | None:intergenic | 50.0% |
| ACGTGGGAAGCTGAAGACAC+CGG | + | chr7_2:2101527-2101546 | Msa1043940:CDS | 55.0% | |
| ! | GACAGTTGTTTCCGGACCTG+CGG | + | chr7_2:2102047-2102066 | Msa1043940:CDS | 55.0% |
| ! | TATGGCGTTTTCCGCAGGTC+CGG | - | chr7_2:2102061-2102080 | None:intergenic | 55.0% |
| ACGTGGGAAGCTGAAGACAC+CGG | + | chr7_2:2101527-2101546 | Msa1043940:CDS | 55.0% | |
| ! | GACAGTTGTTTCCGGACCTG+CGG | + | chr7_2:2102047-2102066 | Msa1043940:CDS | 55.0% |
| ! | TATGGCGTTTTCCGCAGGTC+CGG | - | chr7_2:2102061-2102080 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 2101254 | 2102113 | 2101254 | ID=Msa1043940;Name=Msa1043940 |
| chr7_2 | mRNA | 2101254 | 2102113 | 2101254 | ID=Msa1043940-mRNA-1;Parent=Msa1043940;Name=Msa1043940-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|2|0|210 |
| chr7_2 | exon | 2101254 | 2101691 | 2101254 | ID=Msa1043940-mRNA-1:exon:479;Parent=Msa1043940-mRNA-1 |
| chr7_2 | exon | 2101919 | 2102113 | 2101919 | ID=Msa1043940-mRNA-1:exon:480;Parent=Msa1043940-mRNA-1 |
| chr7_2 | CDS | 2101254 | 2101691 | 2101254 | ID=Msa1043940-mRNA-1:cds;Parent=Msa1043940-mRNA-1 |
| chr7_2 | CDS | 2101919 | 2102113 | 2101919 | ID=Msa1043940-mRNA-1:cds;Parent=Msa1043940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
