Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1044020 | XP_003612667.1 | 88.152 | 211 | 22 | 2 | 3 | 213 | 2 | 209 | 3.69e-125 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1044020 | sp|Q8S9H7|DIV_ANTMA | 38.674 | 181 | 92 | 5 | 30 | 204 | 65 | 232 | 9.73e-26 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1044020 | G7K885 | 88.152 | 211 | 22 | 2 | 3 | 213 | 2 | 209 | 1.76e-125 | 363 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1044020 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1044020 | MtrunA17_Chr5g0409841 | 88.152 | 211 | 22 | 2 | 3 | 213 | 2 | 209 | 3.39e-129 | 363 |
| Msa1044020 | MtrunA17_Chr5g0440731 | 68.571 | 210 | 58 | 4 | 3 | 210 | 18 | 221 | 1.45e-86 | 258 |
| Msa1044020 | MtrunA17_Chr5g0440741 | 68.095 | 210 | 54 | 6 | 3 | 210 | 18 | 216 | 3.21e-83 | 249 |
| Msa1044020 | MtrunA17_Chr5g0409831 | 63.874 | 191 | 51 | 3 | 3 | 192 | 2 | 175 | 1.91e-73 | 222 |
| Msa1044020 | MtrunA17_Chr1g0210471 | 38.824 | 170 | 86 | 4 | 56 | 221 | 82 | 237 | 6.35e-26 | 100 |
| Msa1044020 | MtrunA17_Chr5g0436501 | 35.610 | 205 | 111 | 5 | 30 | 220 | 66 | 263 | 1.26e-25 | 100 |
| Msa1044020 | MtrunA17_Chr1g0162081 | 53.333 | 90 | 39 | 2 | 82 | 171 | 110 | 196 | 2.62e-25 | 100 |
| Msa1044020 | MtrunA17_Chr4g0062741 | 32.195 | 205 | 106 | 6 | 29 | 206 | 45 | 243 | 9.28e-24 | 96.3 |
| Msa1044020 | MtrunA17_Chr3g0104071 | 43.902 | 123 | 61 | 2 | 85 | 207 | 137 | 251 | 6.59e-23 | 94.4 |
| Msa1044020 | MtrunA17_Chr7g0241761 | 44.094 | 127 | 58 | 4 | 84 | 208 | 129 | 244 | 7.22e-23 | 94.4 |
| Msa1044020 | MtrunA17_Chr5g0429521 | 56.790 | 81 | 32 | 2 | 85 | 164 | 122 | 200 | 1.92e-22 | 92.8 |
| Msa1044020 | MtrunA17_Chr4g0055931 | 37.931 | 116 | 68 | 2 | 45 | 160 | 47 | 158 | 2.26e-21 | 90.5 |
| Msa1044020 | MtrunA17_Chr2g0331031 | 51.389 | 72 | 33 | 1 | 91 | 162 | 105 | 174 | 2.93e-20 | 87.8 |
| Msa1044020 | MtrunA17_Chr3g0135671 | 42.478 | 113 | 59 | 3 | 62 | 171 | 59 | 168 | 7.00e-20 | 84.7 |
| Msa1044020 | MtrunA17_Chr6g0488471 | 54.286 | 70 | 30 | 1 | 91 | 160 | 93 | 160 | 3.49e-19 | 84.0 |
| Msa1044020 | MtrunA17_Chr8g0365011 | 39.316 | 117 | 54 | 2 | 65 | 169 | 67 | 178 | 5.84e-19 | 83.2 |
| Msa1044020 | MtrunA17_Chr8g0389241 | 52.857 | 70 | 30 | 1 | 91 | 160 | 101 | 167 | 2.13e-18 | 81.6 |
| Msa1044020 | MtrunA17_Chr5g0415191 | 51.852 | 81 | 31 | 2 | 66 | 142 | 73 | 149 | 3.87e-18 | 81.3 |
| Msa1044020 | MtrunA17_Chr4g0059701 | 55.738 | 61 | 27 | 0 | 81 | 141 | 70 | 130 | 9.06e-18 | 80.1 |
| Msa1044020 | MtrunA17_Chr8g0364731 | 51.515 | 66 | 32 | 0 | 104 | 169 | 10 | 75 | 2.18e-17 | 77.0 |
| Msa1044020 | MtrunA17_Chr3g0092621 | 42.105 | 76 | 42 | 1 | 90 | 165 | 79 | 152 | 1.46e-16 | 74.3 |
| Msa1044020 | MtrunA17_Chr5g0432921 | 50.562 | 89 | 36 | 4 | 96 | 182 | 114 | 196 | 4.64e-16 | 74.3 |
| Msa1044020 | MtrunA17_Chr1g0192061 | 38.060 | 134 | 62 | 4 | 37 | 169 | 22 | 135 | 7.23e-16 | 72.8 |
| Msa1044020 | MtrunA17_Chr6g0452791 | 42.500 | 80 | 46 | 0 | 95 | 174 | 80 | 159 | 6.73e-15 | 70.1 |
| Msa1044020 | MtrunA17_Chr8g0370121 | 47.761 | 67 | 35 | 0 | 90 | 156 | 95 | 161 | 8.06e-15 | 71.2 |
| Msa1044020 | MtrunA17_Chr5g0432941 | 39.516 | 124 | 63 | 5 | 65 | 182 | 79 | 196 | 9.35e-15 | 70.5 |
| Msa1044020 | MtrunA17_Chr5g0409951 | 36.885 | 122 | 59 | 4 | 2 | 121 | 25 | 130 | 1.44e-13 | 67.8 |
| Msa1044020 | MtrunA17_Chr8g0370131 | 41.096 | 73 | 43 | 0 | 90 | 162 | 98 | 170 | 4.85e-13 | 65.9 |
| Msa1044020 | MtrunA17_Chr3g0113121 | 46.250 | 80 | 35 | 3 | 96 | 168 | 96 | 174 | 1.01e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1044020 | AT5G08520.1 | 44.355 | 124 | 55 | 2 | 60 | 171 | 71 | 192 | 7.07e-26 | 102 |
| Msa1044020 | AT5G23650.1 | 45.299 | 117 | 59 | 2 | 55 | 171 | 83 | 194 | 7.55e-24 | 97.8 |
| Msa1044020 | AT3G10580.2 | 34.043 | 188 | 97 | 7 | 22 | 206 | 39 | 202 | 8.63e-24 | 95.9 |
| Msa1044020 | AT5G04760.1 | 53.012 | 83 | 37 | 1 | 80 | 162 | 84 | 164 | 1.46e-23 | 94.4 |
| Msa1044020 | AT3G10580.1 | 34.043 | 188 | 97 | 7 | 22 | 206 | 39 | 202 | 2.11e-23 | 95.5 |
| Msa1044020 | AT5G58900.1 | 60.000 | 75 | 27 | 2 | 91 | 164 | 137 | 209 | 6.48e-23 | 94.4 |
| Msa1044020 | AT1G49010.1 | 50.000 | 86 | 40 | 2 | 87 | 171 | 126 | 209 | 7.66e-23 | 94.4 |
| Msa1044020 | AT2G38090.1 | 53.659 | 82 | 35 | 2 | 84 | 164 | 130 | 209 | 2.44e-21 | 90.1 |
| Msa1044020 | AT3G11280.2 | 40.769 | 130 | 69 | 3 | 83 | 206 | 115 | 242 | 8.43e-21 | 88.2 |
| Msa1044020 | AT3G11280.1 | 40.769 | 130 | 69 | 3 | 83 | 206 | 115 | 242 | 8.43e-21 | 88.2 |
| Msa1044020 | AT5G47390.1 | 45.455 | 99 | 47 | 3 | 84 | 181 | 89 | 181 | 1.81e-20 | 88.6 |
| Msa1044020 | AT5G01200.1 | 56.000 | 75 | 30 | 2 | 91 | 164 | 142 | 214 | 2.30e-20 | 87.0 |
| Msa1044020 | AT5G61620.1 | 53.750 | 80 | 31 | 2 | 84 | 163 | 101 | 174 | 7.33e-20 | 86.7 |
| Msa1044020 | AT5G05790.2 | 37.086 | 151 | 81 | 3 | 83 | 221 | 119 | 267 | 7.41e-20 | 85.9 |
| Msa1044020 | AT5G05790.1 | 37.086 | 151 | 81 | 3 | 83 | 221 | 119 | 267 | 7.41e-20 | 85.9 |
| Msa1044020 | AT5G56840.1 | 52.857 | 70 | 32 | 1 | 91 | 160 | 87 | 155 | 1.73e-18 | 81.3 |
| Msa1044020 | AT3G16350.1 | 52.703 | 74 | 33 | 2 | 70 | 142 | 112 | 184 | 1.13e-17 | 81.3 |
| Msa1044020 | AT1G70000.1 | 42.857 | 105 | 52 | 3 | 42 | 142 | 45 | 145 | 3.00e-17 | 78.6 |
| Msa1044020 | AT1G70000.2 | 42.857 | 105 | 52 | 3 | 42 | 142 | 45 | 145 | 3.00e-17 | 78.6 |
| Msa1044020 | AT1G19000.2 | 51.948 | 77 | 31 | 2 | 65 | 141 | 78 | 148 | 4.67e-17 | 78.2 |
| Msa1044020 | AT1G19000.1 | 51.948 | 77 | 31 | 2 | 65 | 141 | 78 | 148 | 4.67e-17 | 78.2 |
| Msa1044020 | AT1G74840.2 | 52.632 | 76 | 32 | 1 | 66 | 141 | 71 | 142 | 6.19e-17 | 77.4 |
| Msa1044020 | AT1G74840.1 | 52.632 | 76 | 32 | 1 | 66 | 141 | 71 | 142 | 8.06e-17 | 77.4 |
| Msa1044020 | AT4G09450.1 | 50.000 | 74 | 35 | 1 | 90 | 163 | 86 | 157 | 1.20e-16 | 75.9 |
| Msa1044020 | AT3G10590.1 | 42.708 | 96 | 51 | 2 | 69 | 163 | 84 | 176 | 5.04e-15 | 71.2 |
Find 41 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTACATCTTTCACATTT+TGG | 0.117923 | 7_2:+2187106 | None:intergenic |
| TGTGATGTATAGGTTGTTTC+TGG | 0.210646 | 7_2:-2187238 | Msa1044020:intron |
| TCCAATCGGTTCTACAATTC+CGG | 0.270420 | 7_2:-2186898 | Msa1044020:CDS |
| TTAGCTTCATTACTTCCTTC+AGG | 0.334459 | 7_2:+2188089 | None:intergenic |
| TTCTCAAGTTTCTCTATATC+CGG | 0.389268 | 7_2:+2186879 | None:intergenic |
| GCATGGCTAGCAATTTGAAT+TGG | 0.406712 | 7_2:+2187147 | None:intergenic |
| AGATATTTCAAAAGAATTTG+TGG | 0.448838 | 7_2:-2187181 | Msa1044020:CDS |
| TGTGCTTTGCTTTGTCCAAT+CGG | 0.462933 | 7_2:-2186912 | Msa1044020:CDS |
| AATGAGCGGACTTCAATTCA+AGG | 0.465890 | 7_2:-2188236 | Msa1044020:CDS |
| CGGAAGGAATACCATCTTGT+TGG | 0.479644 | 7_2:+2187010 | None:intergenic |
| CAAAGAGAGGGCGTAGGGAA+AGG | 0.497543 | 7_2:-2188025 | Msa1044020:CDS |
| AAAGAGAGGGCGTAGGGAAA+GGG | 0.499642 | 7_2:-2188024 | Msa1044020:CDS |
| TGTTATAGGAACATGGAAGA+AGG | 0.512958 | 7_2:-2188296 | None:intergenic |
| GGAAGTAATGAAGCTAACTT+AGG | 0.518501 | 7_2:-2188083 | Msa1044020:CDS |
| GACACAAGCTTAAACAAGAA+TGG | 0.520303 | 7_2:-2187057 | Msa1044020:CDS |
| ATGTATAGGTTGTTTCTGGA+GGG | 0.542704 | 7_2:-2187234 | Msa1044020:intron |
| GACAAAGCAAAGCACAACAT+TGG | 0.543606 | 7_2:+2186919 | None:intergenic |
| GTCTGTTGCATTCCTTGAGG+AGG | 0.550846 | 7_2:+2186967 | None:intergenic |
| TGTTCCATGCTATTCTCAGA+GGG | 0.555847 | 7_2:+2188212 | None:intergenic |
| TTGTTCCATGCTATTCTCAG+AGG | 0.560192 | 7_2:+2188211 | None:intergenic |
| TAGGGAAAGGGTACATTGGA+CGG | 0.560493 | 7_2:-2188012 | Msa1044020:CDS |
| TCCGGAATTGTAGAACCGAT+TGG | 0.561152 | 7_2:+2186897 | None:intergenic |
| TGTATAGGTTGTTTCTGGAG+GGG | 0.562950 | 7_2:-2187233 | Msa1044020:intron |
| GTGAAGCAAAGAGAGGGCGT+AGG | 0.568855 | 7_2:-2188031 | Msa1044020:CDS |
| TTCATTAGAGTTTAGCATTG+CGG | 0.571002 | 7_2:+2188139 | None:intergenic |
| GGCGTAGGGAAAGGGTACAT+TGG | 0.572735 | 7_2:-2188016 | Msa1044020:CDS |
| CTCGCTGTTGACCAACAAGA+TGG | 0.575706 | 7_2:-2187021 | Msa1044020:CDS |
| CAAAATGAGACTCCTCCTCA+AGG | 0.583176 | 7_2:-2186979 | Msa1044020:CDS |
| GAAAGGGTACATTGGACGGA+AGG | 0.588233 | 7_2:-2188008 | Msa1044020:CDS |
| TGAAGCAAAGAGAGGGCGTA+GGG | 0.595570 | 7_2:-2188030 | Msa1044020:CDS |
| CAAGCTGAGTCAGTACAAGA+AGG | 0.604309 | 7_2:-2188059 | Msa1044020:CDS |
| GATGTATAGGTTGTTTCTGG+AGG | 0.607647 | 7_2:-2187235 | Msa1044020:intron |
| CAAGCTGAGTCAGTACCTGA+AGG | 0.616539 | 7_2:-2188104 | Msa1044020:CDS |
| CGACACTGATGTCATTGAGT+CGG | 0.619037 | 7_2:-2188171 | Msa1044020:CDS |
| ATCATATCGATTTAAATGAG+CGG | 0.624082 | 7_2:-2188250 | Msa1044020:CDS |
| TCATTTAAATCGATATGATG+AGG | 0.628741 | 7_2:+2188254 | None:intergenic |
| GGAAGTCGTGAAGCAAAGAG+AGG | 0.632062 | 7_2:-2188038 | Msa1044020:CDS |
| AGGTCCCTCTGAGAATAGCA+TGG | 0.632380 | 7_2:-2188216 | Msa1044020:CDS |
| GAAGTCGTGAAGCAAAGAGA+GGG | 0.647998 | 7_2:-2188037 | Msa1044020:CDS |
| ATTAGAGTTTAGCATTGCGG+CGG | 0.651248 | 7_2:+2188142 | None:intergenic |
| TGTGTCTGTTGCATTCCTTG+AGG | 0.673315 | 7_2:+2186964 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACAAATATAAATTTTGTTT+TGG | - | chr7_2:2187274-2187293 | Msa1044020:intron | 10.0% |
| !! | TAGAATTGAAAAAAAAAATA+TGG | + | chr7_2:2187408-2187427 | None:intergenic | 10.0% |
| !!! | TTTTTTCAATTCTATATTTT+AGG | - | chr7_2:2187414-2187433 | Msa1044020:intron | 10.0% |
| !!! | TACAAATATAAATTTTGTTT+TGG | - | chr7_2:2187274-2187293 | Msa1044020:intron | 10.0% |
| !! | TAGAATTGAAAAAAAAAATA+TGG | + | chr7_2:2187408-2187427 | None:intergenic | 10.0% |
| !!! | TTTTTTCAATTCTATATTTT+AGG | - | chr7_2:2187414-2187433 | Msa1044020:intron | 10.0% |
| !! | AAAAATATATATAACTTCCA+AGG | + | chr7_2:2187210-2187229 | None:intergenic | 15.0% |
| !!! | TGGAAGTTATATATATTTTT+TGG | - | chr7_2:2187210-2187229 | Msa1044020:CDS | 15.0% |
| !! | AAAAATATATATAACTTCCA+AGG | + | chr7_2:2187210-2187229 | None:intergenic | 15.0% |
| !!! | TGGAAGTTATATATATTTTT+TGG | - | chr7_2:2187210-2187229 | Msa1044020:CDS | 15.0% |
| !! | GTAAATTAGTACATATCAAT+TGG | + | chr7_2:2187622-2187641 | None:intergenic | 20.0% |
| !!! | TTCTATAATTTGTGATGTAT+AGG | - | chr7_2:2187918-2187937 | Msa1044020:intron | 20.0% |
| !! | AGATATTTCAAAAGAATTTG+TGG | - | chr7_2:2187985-2188004 | Msa1044020:intron | 20.0% |
| !! | GTAAATTAGTACATATCAAT+TGG | + | chr7_2:2187622-2187641 | None:intergenic | 20.0% |
| !!! | TTCTATAATTTGTGATGTAT+AGG | - | chr7_2:2187918-2187937 | Msa1044020:intron | 20.0% |
| !! | AGATATTTCAAAAGAATTTG+TGG | - | chr7_2:2187985-2188004 | Msa1044020:intron | 20.0% |
| ! | TCATTTAAATCGATATGATG+AGG | + | chr7_2:2186915-2186934 | None:intergenic | 25.0% |
| !!! | ATCATATCGATTTAAATGAG+CGG | - | chr7_2:2186916-2186935 | Msa1044020:CDS | 25.0% |
| ! | AGATGCAAATTAATCTTTCT+AGG | - | chr7_2:2187751-2187770 | Msa1044020:intron | 25.0% |
| !!! | TTGGTGGATAAAGAATTTTT+GGG | + | chr7_2:2188044-2188063 | None:intergenic | 25.0% |
| !!! | TTTGGTGGATAAAGAATTTT+TGG | + | chr7_2:2188045-2188064 | None:intergenic | 25.0% |
| ! | TCATTTAAATCGATATGATG+AGG | + | chr7_2:2186915-2186934 | None:intergenic | 25.0% |
| !!! | ATCATATCGATTTAAATGAG+CGG | - | chr7_2:2186916-2186935 | Msa1044020:CDS | 25.0% |
| ! | AGATGCAAATTAATCTTTCT+AGG | - | chr7_2:2187751-2187770 | Msa1044020:intron | 25.0% |
| !!! | TTGGTGGATAAAGAATTTTT+GGG | + | chr7_2:2188044-2188063 | None:intergenic | 25.0% |
| !!! | TTTGGTGGATAAAGAATTTT+TGG | + | chr7_2:2188045-2188064 | None:intergenic | 25.0% |
| TTCATTAGAGTTTAGCATTG+CGG | + | chr7_2:2187030-2187049 | None:intergenic | 30.0% | |
| GTAAGTATTCAATCTATCCT+TGG | - | chr7_2:2187190-2187209 | Msa1044020:CDS | 30.0% | |
| ! | CATATCAATTGGTAGTTACA+AGG | + | chr7_2:2187611-2187630 | None:intergenic | 30.0% |
| ! | TTCAAGTGTTTGCATTGTTT+TGG | - | chr7_2:2187812-2187831 | Msa1044020:intron | 30.0% |
| ! | TCAAGTGTTTGCATTGTTTT+GGG | - | chr7_2:2187813-2187832 | Msa1044020:intron | 30.0% |
| ! | TCTCTACATCTTTCACATTT+TGG | + | chr7_2:2188063-2188082 | None:intergenic | 30.0% |
| TTCATTAGAGTTTAGCATTG+CGG | + | chr7_2:2187030-2187049 | None:intergenic | 30.0% | |
| GTAAGTATTCAATCTATCCT+TGG | - | chr7_2:2187190-2187209 | Msa1044020:CDS | 30.0% | |
| ! | CATATCAATTGGTAGTTACA+AGG | + | chr7_2:2187611-2187630 | None:intergenic | 30.0% |
| ! | TTCAAGTGTTTGCATTGTTT+TGG | - | chr7_2:2187812-2187831 | Msa1044020:intron | 30.0% |
| ! | TCAAGTGTTTGCATTGTTTT+GGG | - | chr7_2:2187813-2187832 | Msa1044020:intron | 30.0% |
| ! | TCTCTACATCTTTCACATTT+TGG | + | chr7_2:2188063-2188082 | None:intergenic | 30.0% |
| TTAGCTTCATTACTTCCTTC+AGG | + | chr7_2:2187080-2187099 | None:intergenic | 35.0% | |
| GGAAGTAATGAAGCTAACTT+AGG | - | chr7_2:2187083-2187102 | Msa1044020:CDS | 35.0% | |
| AATGTTAACTAGTGTCCCAA+GGG | + | chr7_2:2187383-2187402 | None:intergenic | 35.0% | |
| ! | TGTGATGTATAGGTTGTTTC+TGG | - | chr7_2:2187928-2187947 | Msa1044020:intron | 35.0% |
| !! | ATGTATAGGTTGTTTCTGGA+GGG | - | chr7_2:2187932-2187951 | Msa1044020:intron | 35.0% |
| GGGCTAGAAAAATATGGTAA+GGG | - | chr7_2:2187953-2187972 | Msa1044020:intron | 35.0% | |
| AAAAATATGGTAAGGGACGT+TGG | - | chr7_2:2187960-2187979 | Msa1044020:intron | 35.0% | |
| !! | GGATAAAGAATTTTTGGGCA+TGG | + | chr7_2:2188039-2188058 | None:intergenic | 35.0% |
| ! | CTACATCTTTCACATTTTGG+TGG | + | chr7_2:2188060-2188079 | None:intergenic | 35.0% |
| GACACAAGCTTAAACAAGAA+TGG | - | chr7_2:2188109-2188128 | Msa1044020:CDS | 35.0% | |
| TTAGCTTCATTACTTCCTTC+AGG | + | chr7_2:2187080-2187099 | None:intergenic | 35.0% | |
| GGAAGTAATGAAGCTAACTT+AGG | - | chr7_2:2187083-2187102 | Msa1044020:CDS | 35.0% | |
| AATGTTAACTAGTGTCCCAA+GGG | + | chr7_2:2187383-2187402 | None:intergenic | 35.0% | |
| ! | TGTGATGTATAGGTTGTTTC+TGG | - | chr7_2:2187928-2187947 | Msa1044020:intron | 35.0% |
| !! | ATGTATAGGTTGTTTCTGGA+GGG | - | chr7_2:2187932-2187951 | Msa1044020:intron | 35.0% |
| GGGCTAGAAAAATATGGTAA+GGG | - | chr7_2:2187953-2187972 | Msa1044020:intron | 35.0% | |
| AAAAATATGGTAAGGGACGT+TGG | - | chr7_2:2187960-2187979 | Msa1044020:intron | 35.0% | |
| !! | GGATAAAGAATTTTTGGGCA+TGG | + | chr7_2:2188039-2188058 | None:intergenic | 35.0% |
| ! | CTACATCTTTCACATTTTGG+TGG | + | chr7_2:2188060-2188079 | None:intergenic | 35.0% |
| GACACAAGCTTAAACAAGAA+TGG | - | chr7_2:2188109-2188128 | Msa1044020:CDS | 35.0% | |
| ! | AATGAGCGGACTTCAATTCA+AGG | - | chr7_2:2186930-2186949 | Msa1044020:CDS | 40.0% |
| TGTTCCATGCTATTCTCAGA+GGG | + | chr7_2:2186957-2186976 | None:intergenic | 40.0% | |
| TTGTTCCATGCTATTCTCAG+AGG | + | chr7_2:2186958-2186977 | None:intergenic | 40.0% | |
| ATTAGAGTTTAGCATTGCGG+CGG | + | chr7_2:2187027-2187046 | None:intergenic | 40.0% | |
| TTCCTTAACCATTGCCCTAA+GGG | + | chr7_2:2187252-2187271 | None:intergenic | 40.0% | |
| ATTCCTTAACCATTGCCCTA+AGG | + | chr7_2:2187253-2187272 | None:intergenic | 40.0% | |
| AATGCTTAACCAATGCCCTT+GGG | - | chr7_2:2187365-2187384 | Msa1044020:intron | 40.0% | |
| GAATGTTAACTAGTGTCCCA+AGG | + | chr7_2:2187384-2187403 | None:intergenic | 40.0% | |
| AGTGACTAGACACTCAACTT+TGG | - | chr7_2:2187542-2187561 | Msa1044020:intron | 40.0% | |
| CAAGGATGTTGATCTACATG+CGG | + | chr7_2:2187593-2187612 | None:intergenic | 40.0% | |
| !! | GATGTATAGGTTGTTTCTGG+AGG | - | chr7_2:2187931-2187950 | Msa1044020:intron | 40.0% |
| !! | TGTATAGGTTGTTTCTGGAG+GGG | - | chr7_2:2187933-2187952 | Msa1044020:intron | 40.0% |
| GGGGCTAGAAAAATATGGTA+AGG | - | chr7_2:2187952-2187971 | Msa1044020:intron | 40.0% | |
| GCATGGCTAGCAATTTGAAT+TGG | + | chr7_2:2188022-2188041 | None:intergenic | 40.0% | |
| ! | AGTCTCATTTTGTTGCTCGA+CGG | + | chr7_2:2188179-2188198 | None:intergenic | 40.0% |
| GACAAAGCAAAGCACAACAT+TGG | + | chr7_2:2188250-2188269 | None:intergenic | 40.0% | |
| TGTGCTTTGCTTTGTCCAAT+CGG | - | chr7_2:2188254-2188273 | Msa1044020:CDS | 40.0% | |
| ! | TCCAATCGGTTCTACAATTC+CGG | - | chr7_2:2188268-2188287 | Msa1044020:CDS | 40.0% |
| ! | AATGAGCGGACTTCAATTCA+AGG | - | chr7_2:2186930-2186949 | Msa1044020:CDS | 40.0% |
| TGTTCCATGCTATTCTCAGA+GGG | + | chr7_2:2186957-2186976 | None:intergenic | 40.0% | |
| TTGTTCCATGCTATTCTCAG+AGG | + | chr7_2:2186958-2186977 | None:intergenic | 40.0% | |
| ATTAGAGTTTAGCATTGCGG+CGG | + | chr7_2:2187027-2187046 | None:intergenic | 40.0% | |
| TTCCTTAACCATTGCCCTAA+GGG | + | chr7_2:2187252-2187271 | None:intergenic | 40.0% | |
| ATTCCTTAACCATTGCCCTA+AGG | + | chr7_2:2187253-2187272 | None:intergenic | 40.0% | |
| AATGCTTAACCAATGCCCTT+GGG | - | chr7_2:2187365-2187384 | Msa1044020:intron | 40.0% | |
| GAATGTTAACTAGTGTCCCA+AGG | + | chr7_2:2187384-2187403 | None:intergenic | 40.0% | |
| AGTGACTAGACACTCAACTT+TGG | - | chr7_2:2187542-2187561 | Msa1044020:intron | 40.0% | |
| CAAGGATGTTGATCTACATG+CGG | + | chr7_2:2187593-2187612 | None:intergenic | 40.0% | |
| !! | GATGTATAGGTTGTTTCTGG+AGG | - | chr7_2:2187931-2187950 | Msa1044020:intron | 40.0% |
| !! | TGTATAGGTTGTTTCTGGAG+GGG | - | chr7_2:2187933-2187952 | Msa1044020:intron | 40.0% |
| GGGGCTAGAAAAATATGGTA+AGG | - | chr7_2:2187952-2187971 | Msa1044020:intron | 40.0% | |
| GCATGGCTAGCAATTTGAAT+TGG | + | chr7_2:2188022-2188041 | None:intergenic | 40.0% | |
| ! | AGTCTCATTTTGTTGCTCGA+CGG | + | chr7_2:2188179-2188198 | None:intergenic | 40.0% |
| GACAAAGCAAAGCACAACAT+TGG | + | chr7_2:2188250-2188269 | None:intergenic | 40.0% | |
| TGTGCTTTGCTTTGTCCAAT+CGG | - | chr7_2:2188254-2188273 | Msa1044020:CDS | 40.0% | |
| ! | TCCAATCGGTTCTACAATTC+CGG | - | chr7_2:2188268-2188287 | Msa1044020:CDS | 40.0% |
| CGACACTGATGTCATTGAGT+CGG | - | chr7_2:2186995-2187014 | Msa1044020:CDS | 45.0% | |
| CAAGCTGAGTCAGTACAAGA+AGG | - | chr7_2:2187107-2187126 | Msa1044020:CDS | 45.0% | |
| GAAGTCGTGAAGCAAAGAGA+GGG | - | chr7_2:2187129-2187148 | Msa1044020:CDS | 45.0% | |
| ! | TAGGGAAAGGGTACATTGGA+CGG | - | chr7_2:2187154-2187173 | Msa1044020:CDS | 45.0% |
| TCTTGCCAACAAATGCCCTT+AGG | - | chr7_2:2187234-2187253 | Msa1044020:intron | 45.0% | |
| CTTGCCAACAAATGCCCTTA+GGG | - | chr7_2:2187235-2187254 | Msa1044020:intron | 45.0% | |
| !! | ATTGCCCTAAGGGCATTTGT+TGG | + | chr7_2:2187242-2187261 | None:intergenic | 45.0% |
| AACAAATGCCCTTAGGGCAA+TGG | - | chr7_2:2187241-2187260 | Msa1044020:intron | 45.0% | |
| GAATGCTTAACCAATGCCCT+TGG | - | chr7_2:2187364-2187383 | Msa1044020:intron | 45.0% | |
| CTGGAGGGGCTAGAAAAATA+TGG | - | chr7_2:2187947-2187966 | Msa1044020:intron | 45.0% | |
| CGGAAGGAATACCATCTTGT+TGG | + | chr7_2:2188159-2188178 | None:intergenic | 45.0% | |
| ! | TCATTTTGTTGCTCGACGGA+AGG | + | chr7_2:2188175-2188194 | None:intergenic | 45.0% |
| CAAAATGAGACTCCTCCTCA+AGG | - | chr7_2:2188187-2188206 | Msa1044020:CDS | 45.0% | |
| TGTGTCTGTTGCATTCCTTG+AGG | + | chr7_2:2188205-2188224 | None:intergenic | 45.0% | |
| TCCGGAATTGTAGAACCGAT+TGG | + | chr7_2:2188272-2188291 | None:intergenic | 45.0% | |
| CGACACTGATGTCATTGAGT+CGG | - | chr7_2:2186995-2187014 | Msa1044020:CDS | 45.0% | |
| CAAGCTGAGTCAGTACAAGA+AGG | - | chr7_2:2187107-2187126 | Msa1044020:CDS | 45.0% | |
| GAAGTCGTGAAGCAAAGAGA+GGG | - | chr7_2:2187129-2187148 | Msa1044020:CDS | 45.0% | |
| ! | TAGGGAAAGGGTACATTGGA+CGG | - | chr7_2:2187154-2187173 | Msa1044020:CDS | 45.0% |
| TCTTGCCAACAAATGCCCTT+AGG | - | chr7_2:2187234-2187253 | Msa1044020:intron | 45.0% | |
| CTTGCCAACAAATGCCCTTA+GGG | - | chr7_2:2187235-2187254 | Msa1044020:intron | 45.0% | |
| !! | ATTGCCCTAAGGGCATTTGT+TGG | + | chr7_2:2187242-2187261 | None:intergenic | 45.0% |
| AACAAATGCCCTTAGGGCAA+TGG | - | chr7_2:2187241-2187260 | Msa1044020:intron | 45.0% | |
| GAATGCTTAACCAATGCCCT+TGG | - | chr7_2:2187364-2187383 | Msa1044020:intron | 45.0% | |
| CTGGAGGGGCTAGAAAAATA+TGG | - | chr7_2:2187947-2187966 | Msa1044020:intron | 45.0% | |
| CGGAAGGAATACCATCTTGT+TGG | + | chr7_2:2188159-2188178 | None:intergenic | 45.0% | |
| ! | TCATTTTGTTGCTCGACGGA+AGG | + | chr7_2:2188175-2188194 | None:intergenic | 45.0% |
| CAAAATGAGACTCCTCCTCA+AGG | - | chr7_2:2188187-2188206 | Msa1044020:CDS | 45.0% | |
| TGTGTCTGTTGCATTCCTTG+AGG | + | chr7_2:2188205-2188224 | None:intergenic | 45.0% | |
| TCCGGAATTGTAGAACCGAT+TGG | + | chr7_2:2188272-2188291 | None:intergenic | 45.0% | |
| ! | AGGTCCCTCTGAGAATAGCA+TGG | - | chr7_2:2186950-2186969 | Msa1044020:CDS | 50.0% |
| CAAGCTGAGTCAGTACCTGA+AGG | - | chr7_2:2187062-2187081 | Msa1044020:CDS | 50.0% | |
| GGAAGTCGTGAAGCAAAGAG+AGG | - | chr7_2:2187128-2187147 | Msa1044020:CDS | 50.0% | |
| ! | TGAAGCAAAGAGAGGGCGTA+GGG | - | chr7_2:2187136-2187155 | Msa1044020:CDS | 50.0% |
| ! | AAAGAGAGGGCGTAGGGAAA+GGG | - | chr7_2:2187142-2187161 | Msa1044020:CDS | 50.0% |
| ! | GAAAGGGTACATTGGACGGA+AGG | - | chr7_2:2187158-2187177 | Msa1044020:CDS | 50.0% |
| TGCCCTTAGGGCAATGGTTA+AGG | - | chr7_2:2187247-2187266 | Msa1044020:intron | 50.0% | |
| ! | AACTAGTGTCCCAAGGGCAT+TGG | + | chr7_2:2187377-2187396 | None:intergenic | 50.0% |
| CTCGCTGTTGACCAACAAGA+TGG | - | chr7_2:2188145-2188164 | Msa1044020:CDS | 50.0% | |
| GTCTGTTGCATTCCTTGAGG+AGG | + | chr7_2:2188202-2188221 | None:intergenic | 50.0% | |
| ! | AGGTCCCTCTGAGAATAGCA+TGG | - | chr7_2:2186950-2186969 | Msa1044020:CDS | 50.0% |
| CAAGCTGAGTCAGTACCTGA+AGG | - | chr7_2:2187062-2187081 | Msa1044020:CDS | 50.0% | |
| GGAAGTCGTGAAGCAAAGAG+AGG | - | chr7_2:2187128-2187147 | Msa1044020:CDS | 50.0% | |
| ! | TGAAGCAAAGAGAGGGCGTA+GGG | - | chr7_2:2187136-2187155 | Msa1044020:CDS | 50.0% |
| ! | AAAGAGAGGGCGTAGGGAAA+GGG | - | chr7_2:2187142-2187161 | Msa1044020:CDS | 50.0% |
| ! | GAAAGGGTACATTGGACGGA+AGG | - | chr7_2:2187158-2187177 | Msa1044020:CDS | 50.0% |
| TGCCCTTAGGGCAATGGTTA+AGG | - | chr7_2:2187247-2187266 | Msa1044020:intron | 50.0% | |
| ! | AACTAGTGTCCCAAGGGCAT+TGG | + | chr7_2:2187377-2187396 | None:intergenic | 50.0% |
| CTCGCTGTTGACCAACAAGA+TGG | - | chr7_2:2188145-2188164 | Msa1044020:CDS | 50.0% | |
| GTCTGTTGCATTCCTTGAGG+AGG | + | chr7_2:2188202-2188221 | None:intergenic | 50.0% | |
| ! | GTGAAGCAAAGAGAGGGCGT+AGG | - | chr7_2:2187135-2187154 | Msa1044020:CDS | 55.0% |
| ! | CAAAGAGAGGGCGTAGGGAA+AGG | - | chr7_2:2187141-2187160 | Msa1044020:CDS | 55.0% |
| ! | GGCGTAGGGAAAGGGTACAT+TGG | - | chr7_2:2187150-2187169 | Msa1044020:CDS | 55.0% |
| ! | GTGAAGCAAAGAGAGGGCGT+AGG | - | chr7_2:2187135-2187154 | Msa1044020:CDS | 55.0% |
| ! | CAAAGAGAGGGCGTAGGGAA+AGG | - | chr7_2:2187141-2187160 | Msa1044020:CDS | 55.0% |
| ! | GGCGTAGGGAAAGGGTACAT+TGG | - | chr7_2:2187150-2187169 | Msa1044020:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 2186882 | 2188306 | 2186882 | ID=Msa1044020;Name=Msa1044020 |
| chr7_2 | mRNA | 2186882 | 2188306 | 2186882 | ID=Msa1044020-mRNA-1;Parent=Msa1044020;Name=Msa1044020-mRNA-1;_AED=0.03;_eAED=0.10;_QI=0|0|0|1|1|1|2|0|224 |
| chr7_2 | exon | 2187999 | 2188306 | 2187999 | ID=Msa1044020-mRNA-1:exon:498;Parent=Msa1044020-mRNA-1 |
| chr7_2 | exon | 2186882 | 2187248 | 2186882 | ID=Msa1044020-mRNA-1:exon:497;Parent=Msa1044020-mRNA-1 |
| chr7_2 | CDS | 2187999 | 2188306 | 2187999 | ID=Msa1044020-mRNA-1:cds;Parent=Msa1044020-mRNA-1 |
| chr7_2 | CDS | 2186882 | 2187248 | 2186882 | ID=Msa1044020-mRNA-1:cds;Parent=Msa1044020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
