Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1045850 | AES77662.2 | 95.035 | 141 | 7 | 0 | 1 | 141 | 1 | 141 | 5.36e-93 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1045850 | sp|O48686|SNL3_ARATH | 51.701 | 147 | 64 | 2 | 1 | 141 | 17 | 162 | 1.78e-42 | 152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1045850 | G7L5B2 | 95.035 | 141 | 7 | 0 | 1 | 141 | 1 | 141 | 2.56e-93 | 275 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1045850 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1045850 | MtrunA17_Chr7g0218911 | 94.382 | 89 | 5 | 0 | 1 | 89 | 1 | 89 | 2.36e-55 | 169 |
| Msa1045850 | MtrunA17_Chr6g0452001 | 48.299 | 147 | 67 | 2 | 2 | 141 | 67 | 211 | 1.45e-41 | 146 |
| Msa1045850 | MtrunA17_Chr8g0364231 | 47.586 | 145 | 71 | 1 | 2 | 141 | 46 | 190 | 5.40e-41 | 145 |
| Msa1045850 | MtrunA17_Chr6g0452021 | 46.528 | 144 | 72 | 2 | 2 | 141 | 47 | 189 | 5.63e-38 | 134 |
| Msa1045850 | MtrunA17_Chr5g0415031 | 45.205 | 146 | 75 | 1 | 1 | 141 | 46 | 191 | 1.17e-37 | 135 |
| Msa1045850 | MtrunA17_Chr7g0218901 | 90.909 | 55 | 5 | 0 | 87 | 141 | 1 | 55 | 5.79e-33 | 110 |
| Msa1045850 | MtrunA17_Chr1g0206771 | 39.286 | 140 | 83 | 1 | 2 | 141 | 20 | 157 | 3.80e-25 | 94.4 |
| Msa1045850 | MtrunA17_Chr1g0206771 | 41.538 | 65 | 38 | 0 | 2 | 66 | 99 | 163 | 2.26e-11 | 58.5 |
| Msa1045850 | MtrunA17_Chr4g0075861 | 35.000 | 140 | 87 | 2 | 2 | 141 | 16 | 151 | 2.59e-20 | 85.1 |
| Msa1045850 | MtrunA17_Chr4g0075861 | 39.326 | 89 | 47 | 1 | 2 | 83 | 176 | 264 | 1.27e-14 | 69.3 |
| Msa1045850 | MtrunA17_Chr4g0075861 | 29.655 | 145 | 94 | 2 | 2 | 141 | 93 | 234 | 5.19e-14 | 67.8 |
| Msa1045850 | MtrunA17_Chr1g0205821 | 28.767 | 146 | 99 | 1 | 1 | 141 | 16 | 161 | 1.56e-19 | 79.7 |
| Msa1045850 | MtrunA17_Chr1g0205821 | 43.284 | 67 | 38 | 0 | 2 | 68 | 103 | 169 | 2.40e-11 | 58.5 |
| Msa1045850 | MtrunA17_Chr4g0075971 | 34.286 | 140 | 88 | 2 | 2 | 141 | 16 | 151 | 2.15e-19 | 83.2 |
| Msa1045850 | MtrunA17_Chr4g0075971 | 39.326 | 89 | 47 | 1 | 2 | 83 | 176 | 264 | 5.42e-14 | 67.8 |
| Msa1045850 | MtrunA17_Chr4g0075971 | 28.966 | 145 | 95 | 2 | 2 | 141 | 93 | 234 | 1.45e-12 | 63.5 |
| Msa1045850 | MtrunA17_Chr7g0218891 | 31.293 | 147 | 94 | 3 | 2 | 141 | 17 | 163 | 2.06e-18 | 79.0 |
| Msa1045850 | MtrunA17_Chr7g0218891 | 29.252 | 147 | 97 | 3 | 2 | 141 | 103 | 249 | 2.13e-16 | 73.6 |
| Msa1045850 | MtrunA17_Chr7g0218891 | 41.026 | 78 | 44 | 1 | 2 | 77 | 189 | 266 | 4.48e-12 | 61.6 |
| Msa1045850 | MtrunA17_Chr3g0077891 | 34.000 | 150 | 88 | 3 | 3 | 141 | 13 | 162 | 3.55e-18 | 76.3 |
| Msa1045850 | MtrunA17_Chr3g0077891 | 46.970 | 66 | 34 | 1 | 2 | 66 | 103 | 168 | 1.01e-12 | 62.0 |
| Msa1045850 | MtrunA17_Chr3g0077941 | 33.813 | 139 | 83 | 2 | 12 | 141 | 23 | 161 | 6.12e-18 | 75.9 |
| Msa1045850 | MtrunA17_Chr3g0077941 | 42.647 | 68 | 38 | 1 | 2 | 68 | 102 | 169 | 1.38e-11 | 58.9 |
| Msa1045850 | MtrunA17_Chr1g0206781 | 53.846 | 65 | 30 | 0 | 2 | 66 | 15 | 79 | 1.10e-17 | 73.6 |
| Msa1045850 | MtrunA17_Chr3g0077861 | 34.351 | 131 | 81 | 2 | 16 | 141 | 23 | 153 | 2.11e-17 | 73.9 |
| Msa1045850 | MtrunA17_Chr3g0077861 | 44.286 | 70 | 38 | 1 | 2 | 70 | 94 | 163 | 8.53e-14 | 64.7 |
| Msa1045850 | MtrunA17_Chr3g0077911 | 34.351 | 131 | 81 | 2 | 16 | 141 | 23 | 153 | 2.22e-17 | 73.9 |
| Msa1045850 | MtrunA17_Chr3g0077911 | 44.776 | 67 | 36 | 1 | 2 | 67 | 94 | 160 | 2.72e-12 | 60.5 |
| Msa1045850 | MtrunA17_Chr3g0077881 | 32.857 | 140 | 84 | 2 | 12 | 141 | 23 | 162 | 3.54e-17 | 73.6 |
| Msa1045850 | MtrunA17_Chr1g0205861 | 43.077 | 65 | 37 | 0 | 2 | 66 | 20 | 84 | 1.66e-14 | 65.5 |
| Msa1045850 | MtrunA17_Chr1g0205811 | 46.269 | 67 | 36 | 0 | 2 | 68 | 18 | 84 | 8.49e-14 | 63.5 |
| Msa1045850 | MtrunA17_Chr8g0364021 | 40.909 | 66 | 39 | 0 | 2 | 67 | 48 | 113 | 3.22e-13 | 64.3 |
| Msa1045850 | MtrunA17_Chr1g0209201 | 32.576 | 132 | 76 | 3 | 2 | 129 | 20 | 142 | 5.07e-13 | 62.0 |
| Msa1045850 | MtrunA17_Chr2g0328701 | 37.363 | 91 | 53 | 2 | 2 | 92 | 33 | 119 | 2.15e-12 | 60.1 |
| Msa1045850 | MtrunA17_Chr1g0205831 | 25.000 | 140 | 95 | 1 | 2 | 141 | 6 | 135 | 1.41e-11 | 58.9 |
| Msa1045850 | MtrunA17_Chr1g0205801 | 41.791 | 67 | 39 | 0 | 2 | 68 | 16 | 82 | 4.28e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1045850 | AT1G24190.2 | 51.701 | 147 | 64 | 2 | 1 | 141 | 17 | 162 | 1.78e-43 | 152 |
| Msa1045850 | AT1G24190.1 | 51.701 | 147 | 64 | 2 | 1 | 141 | 17 | 162 | 1.81e-43 | 152 |
| Msa1045850 | AT1G24190.3 | 51.701 | 147 | 64 | 2 | 1 | 141 | 17 | 162 | 2.05e-43 | 152 |
| Msa1045850 | AT1G70060.2 | 49.664 | 149 | 65 | 2 | 1 | 141 | 17 | 163 | 1.49e-41 | 147 |
| Msa1045850 | AT1G70060.1 | 49.664 | 149 | 65 | 2 | 1 | 141 | 17 | 163 | 1.49e-41 | 147 |
| Msa1045850 | AT1G59890.3 | 48.252 | 143 | 71 | 2 | 2 | 141 | 49 | 191 | 4.64e-40 | 142 |
| Msa1045850 | AT1G59890.4 | 47.917 | 144 | 72 | 2 | 1 | 141 | 48 | 191 | 4.68e-40 | 142 |
| Msa1045850 | AT1G59890.2 | 48.252 | 143 | 71 | 2 | 2 | 141 | 49 | 191 | 4.69e-40 | 142 |
| Msa1045850 | AT5G15020.2 | 47.917 | 144 | 70 | 2 | 2 | 141 | 56 | 198 | 4.78e-40 | 142 |
| Msa1045850 | AT1G59890.1 | 48.252 | 143 | 71 | 2 | 2 | 141 | 49 | 191 | 4.87e-40 | 142 |
| Msa1045850 | AT5G15020.1 | 47.917 | 144 | 70 | 2 | 2 | 141 | 56 | 198 | 4.97e-40 | 142 |
| Msa1045850 | AT3G01320.1 | 47.260 | 146 | 69 | 2 | 2 | 141 | 61 | 204 | 8.76e-39 | 139 |
| Msa1045850 | AT3G01320.2 | 47.260 | 146 | 69 | 2 | 2 | 141 | 61 | 204 | 8.84e-39 | 139 |
| Msa1045850 | AT1G10450.3 | 44.056 | 143 | 77 | 2 | 2 | 141 | 88 | 230 | 8.54e-35 | 127 |
| Msa1045850 | AT1G10450.2 | 44.056 | 143 | 77 | 2 | 2 | 141 | 37 | 179 | 9.84e-35 | 127 |
| Msa1045850 | AT1G10450.1 | 44.056 | 143 | 77 | 2 | 2 | 141 | 37 | 179 | 9.84e-35 | 127 |
| Msa1045850 | AT1G70030.1 | 43.750 | 144 | 76 | 2 | 2 | 141 | 15 | 157 | 1.16e-33 | 115 |
| Msa1045850 | AT1G24200.1 | 39.437 | 142 | 84 | 1 | 2 | 141 | 18 | 159 | 6.88e-33 | 115 |
| Msa1045850 | AT1G24230.1 | 38.849 | 139 | 83 | 2 | 2 | 138 | 90 | 228 | 9.80e-30 | 108 |
| Msa1045850 | AT1G24230.1 | 30.000 | 140 | 87 | 2 | 2 | 140 | 18 | 147 | 5.25e-14 | 67.0 |
| Msa1045850 | AT1G24250.1 | 37.857 | 140 | 68 | 2 | 2 | 140 | 124 | 245 | 1.06e-23 | 92.8 |
| Msa1045850 | AT1G23810.1 | 34.532 | 139 | 72 | 2 | 2 | 139 | 113 | 233 | 1.34e-21 | 87.0 |
| Msa1045850 | AT1G27280.1 | 37.008 | 127 | 74 | 2 | 2 | 122 | 85 | 211 | 2.33e-20 | 83.6 |
| Msa1045850 | AT1G27260.1 | 34.286 | 140 | 73 | 2 | 2 | 140 | 97 | 218 | 4.87e-19 | 80.1 |
| Msa1045850 | AT1G27260.1 | 30.405 | 148 | 94 | 1 | 2 | 140 | 7 | 154 | 2.10e-15 | 70.5 |
| Msa1045850 | AT5G15025.1 | 53.030 | 66 | 31 | 0 | 2 | 67 | 51 | 116 | 1.83e-18 | 75.9 |
| Msa1045850 | AT1G24210.1 | 33.094 | 139 | 76 | 3 | 2 | 139 | 18 | 140 | 1.05e-17 | 75.1 |
| Msa1045850 | AT1G70030.2 | 33.333 | 144 | 59 | 2 | 2 | 141 | 26 | 136 | 2.07e-16 | 71.2 |
| Msa1045850 | AT5G35610.1 | 36.496 | 137 | 67 | 2 | 2 | 122 | 14 | 146 | 2.30e-16 | 71.6 |
| Msa1045850 | AT1G27270.1 | 35.766 | 137 | 69 | 3 | 2 | 137 | 117 | 235 | 2.63e-16 | 73.2 |
| Msa1045850 | AT1G27240.1 | 30.247 | 162 | 85 | 4 | 2 | 136 | 18 | 178 | 1.16e-15 | 70.5 |
| Msa1045850 | AT4G12020.2 | 44.928 | 69 | 37 | 1 | 2 | 70 | 312 | 379 | 2.73e-14 | 69.3 |
| Msa1045850 | AT4G12020.4 | 44.928 | 69 | 37 | 1 | 2 | 70 | 312 | 379 | 2.75e-14 | 68.9 |
| Msa1045850 | AT4G12020.5 | 44.928 | 69 | 37 | 1 | 2 | 70 | 245 | 312 | 3.03e-14 | 68.9 |
| Msa1045850 | AT4G12020.10 | 44.928 | 69 | 37 | 1 | 2 | 70 | 312 | 379 | 3.03e-14 | 68.9 |
| Msa1045850 | AT4G12020.3 | 44.928 | 69 | 37 | 1 | 2 | 70 | 312 | 379 | 3.03e-14 | 68.9 |
| Msa1045850 | AT4G12020.1 | 44.928 | 69 | 37 | 1 | 2 | 70 | 312 | 379 | 3.08e-14 | 68.9 |
| Msa1045850 | AT4G12020.9 | 44.928 | 69 | 37 | 1 | 2 | 70 | 312 | 379 | 3.08e-14 | 68.9 |
| Msa1045850 | AT4G12020.7 | 44.928 | 69 | 37 | 1 | 2 | 70 | 312 | 379 | 3.27e-14 | 68.9 |
| Msa1045850 | AT4G12020.11 | 44.928 | 69 | 37 | 1 | 2 | 70 | 312 | 379 | 3.42e-14 | 68.9 |
| Msa1045850 | AT4G12020.6 | 44.928 | 69 | 37 | 1 | 2 | 70 | 312 | 379 | 3.63e-14 | 68.9 |
| Msa1045850 | AT4G12020.8 | 44.928 | 69 | 37 | 1 | 2 | 70 | 312 | 379 | 3.63e-14 | 68.9 |
| Msa1045850 | AT1G70030.3 | 39.560 | 91 | 51 | 1 | 2 | 88 | 26 | 116 | 4.50e-14 | 64.7 |
| Msa1045850 | AT5G15040.1 | 43.939 | 66 | 37 | 0 | 2 | 67 | 7 | 72 | 1.54e-12 | 59.7 |
| Msa1045850 | AT5G15040.3 | 43.939 | 66 | 37 | 0 | 2 | 67 | 7 | 72 | 1.54e-12 | 59.7 |
| Msa1045850 | AT5G15040.2 | 43.939 | 66 | 37 | 0 | 2 | 67 | 7 | 72 | 1.54e-12 | 59.7 |
Find 21 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAATCCATCTGGCAAAA+AGG | 0.287960 | 7_2:-6091968 | None:intergenic |
| TATTCTTTAGTGATCACTTT+TGG | 0.343155 | 7_2:-6092012 | None:intergenic |
| GGAGCTCCTTAACACTCTTA+TGG | 0.377807 | 7_2:-6092569 | None:intergenic |
| ATGTATTTGTAGAATTGATC+TGG | 0.430976 | 7_2:+6091879 | Msa1045850:intron |
| GATGTATCTCAATGAAATAA+AGG | 0.440944 | 7_2:+6091702 | None:intergenic |
| AAATGACCATAAGAGTGTTA+AGG | 0.472546 | 7_2:+6092563 | Msa1045850:CDS |
| TAGAATTGATCTGGAGGGTG+TGG | 0.501765 | 7_2:+6091888 | Msa1045850:intron |
| AGTGAGATTTCAAATCCATC+TGG | 0.524903 | 7_2:-6091976 | None:intergenic |
| TCGATTTCGACGTAACCCTC+AGG | 0.544421 | 7_2:+6092503 | Msa1045850:CDS |
| TAAACTCATCAACAAGATCC+TGG | 0.547860 | 7_2:-6092731 | None:intergenic |
| GGGTGTGGTGGCAAGAGTGA+AGG | 0.566355 | 7_2:+6091903 | Msa1045850:CDS |
| AAAACGATTCATAAACCTGA+GGG | 0.569217 | 7_2:-6092518 | None:intergenic |
| GCAAAACACATACCGTTTGG+TGG | 0.573555 | 7_2:-6092590 | None:intergenic |
| GAAATATGTATGCAAGGTGA+AGG | 0.576664 | 7_2:+6092041 | Msa1045850:CDS |
| TGAAAGATTTCGAGAAACGA+AGG | 0.586700 | 7_2:+6091773 | Msa1045850:CDS |
| TGTTAAGGAGCTCCACCAAA+CGG | 0.586892 | 7_2:+6092578 | Msa1045850:CDS |
| TGCTTTGAAATATGTATGCA+AGG | 0.609709 | 7_2:+6092035 | Msa1045850:CDS |
| AATTGATCTGGAGGGTGTGG+TGG | 0.629593 | 7_2:+6091891 | Msa1045850:CDS |
| TATTTGTAGAATTGATCTGG+AGG | 0.689246 | 7_2:+6091882 | Msa1045850:intron |
| ATTTGTAGAATTGATCTGGA+GGG | 0.693473 | 7_2:+6091883 | Msa1045850:intron |
| ACTCATCAACAAGATCCTGG+TGG | 0.741733 | 7_2:-6092728 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTTATTTATTTATAAT+AGG | + | chr7_2:6091805-6091824 | Msa1045850:intron | 0.0% |
| !!! | ATTTTAATTTTAATTATAAT+TGG | + | chr7_2:6092675-6092694 | Msa1045850:intron | 0.0% |
| !! | TTAATTTATTTATTTATAAT+AGG | + | chr7_2:6091805-6091824 | Msa1045850:intron | 0.0% |
| !!! | ATTTTAATTTTAATTATAAT+TGG | + | chr7_2:6092675-6092694 | Msa1045850:intron | 0.0% |
| !!! | TTTAATTTGTAAATTGTAAT+TGG | + | chr7_2:6091838-6091857 | Msa1045850:intron | 10.0% |
| !!! | TAAAGTTAAAAATGAATTTT+TGG | + | chr7_2:6092317-6092336 | Msa1045850:intron | 10.0% |
| !!! | TTTAATTTGTAAATTGTAAT+TGG | + | chr7_2:6091838-6091857 | Msa1045850:intron | 10.0% |
| !!! | TAAAGTTAAAAATGAATTTT+TGG | + | chr7_2:6092317-6092336 | Msa1045850:intron | 10.0% |
| !!! | AAAGCAAAATCATTTTTTTA+GGG | - | chr7_2:6092147-6092166 | None:intergenic | 15.0% |
| !!! | TAAAGCAAAATCATTTTTTT+AGG | - | chr7_2:6092148-6092167 | None:intergenic | 15.0% |
| !!! | CAAAACTTTTCTTTTAATTT+TGG | + | chr7_2:6092645-6092664 | Msa1045850:intron | 15.0% |
| !!! | AAAGCAAAATCATTTTTTTA+GGG | - | chr7_2:6092147-6092166 | None:intergenic | 15.0% |
| !!! | TAAAGCAAAATCATTTTTTT+AGG | - | chr7_2:6092148-6092167 | None:intergenic | 15.0% |
| !!! | CAAAACTTTTCTTTTAATTT+TGG | + | chr7_2:6092645-6092664 | Msa1045850:intron | 15.0% |
| !!! | TTTTACATCGAAAATAAATC+TGG | - | chr7_2:6092105-6092124 | None:intergenic | 20.0% |
| !! | TAAAATGAAAAGTTAATCCA+AGG | - | chr7_2:6092299-6092318 | None:intergenic | 20.0% |
| !!! | GGAACAAAATAATTTTTCTA+AGG | + | chr7_2:6092338-6092357 | Msa1045850:intron | 20.0% |
| !!! | GTTTACTTTAATTTCTCTAA+TGG | + | chr7_2:6092463-6092482 | Msa1045850:intron | 20.0% |
| !!! | TTTTACATCGAAAATAAATC+TGG | - | chr7_2:6092105-6092124 | None:intergenic | 20.0% |
| !! | TAAAATGAAAAGTTAATCCA+AGG | - | chr7_2:6092299-6092318 | None:intergenic | 20.0% |
| !!! | GGAACAAAATAATTTTTCTA+AGG | + | chr7_2:6092338-6092357 | Msa1045850:intron | 20.0% |
| !!! | GTTTACTTTAATTTCTCTAA+TGG | + | chr7_2:6092463-6092482 | Msa1045850:intron | 20.0% |
| ! | ATGTATTTGTAGAATTGATC+TGG | + | chr7_2:6091879-6091898 | Msa1045850:intron | 25.0% |
| !! | TATTCTTTAGTGATCACTTT+TGG | - | chr7_2:6092015-6092034 | None:intergenic | 25.0% |
| ! | GCAAATTTAAAGAGAGAATA+CGG | + | chr7_2:6092360-6092379 | Msa1045850:intron | 25.0% |
| ! | AAAATTTCTCTGTAAAAGTG+TGG | + | chr7_2:6092383-6092402 | Msa1045850:intron | 25.0% |
| !! | AATTATAATTGGACTTTTGC+AGG | + | chr7_2:6092686-6092705 | Msa1045850:intron | 25.0% |
| !!! | CAGGTTATTTCAATTTTTCA+AGG | + | chr7_2:6092705-6092724 | Msa1045850:intron | 25.0% |
| ! | ATGTATTTGTAGAATTGATC+TGG | + | chr7_2:6091879-6091898 | Msa1045850:intron | 25.0% |
| !! | TATTCTTTAGTGATCACTTT+TGG | - | chr7_2:6092015-6092034 | None:intergenic | 25.0% |
| ! | GCAAATTTAAAGAGAGAATA+CGG | + | chr7_2:6092360-6092379 | Msa1045850:intron | 25.0% |
| ! | AAAATTTCTCTGTAAAAGTG+TGG | + | chr7_2:6092383-6092402 | Msa1045850:intron | 25.0% |
| !! | AATTATAATTGGACTTTTGC+AGG | + | chr7_2:6092686-6092705 | Msa1045850:intron | 25.0% |
| !!! | CAGGTTATTTCAATTTTTCA+AGG | + | chr7_2:6092705-6092724 | Msa1045850:intron | 25.0% |
| TATTTGTAGAATTGATCTGG+AGG | + | chr7_2:6091882-6091901 | Msa1045850:intron | 30.0% | |
| ATTTGTAGAATTGATCTGGA+GGG | + | chr7_2:6091883-6091902 | Msa1045850:intron | 30.0% | |
| !!! | AGAGTGAAGGAATTTTTTCA+AGG | + | chr7_2:6091916-6091935 | Msa1045850:CDS | 30.0% |
| !!! | GAGTGAAGGAATTTTTTCAA+GGG | + | chr7_2:6091917-6091936 | Msa1045850:CDS | 30.0% |
| !! | TGCTTTGAAATATGTATGCA+AGG | + | chr7_2:6092035-6092054 | Msa1045850:CDS | 30.0% |
| TGTATTGTAGACTTGTATGA+TGG | + | chr7_2:6092068-6092087 | Msa1045850:intron | 30.0% | |
| TTCTTCTTCTTCTTGTGATA+TGG | + | chr7_2:6092188-6092207 | Msa1045850:intron | 30.0% | |
| AAAACGATTCATAAACCTGA+GGG | - | chr7_2:6092521-6092540 | None:intergenic | 30.0% | |
| AAAAACGATTCATAAACCTG+AGG | - | chr7_2:6092522-6092541 | None:intergenic | 30.0% | |
| !! | AAATGACCATAAGAGTGTTA+AGG | + | chr7_2:6092563-6092582 | Msa1045850:CDS | 30.0% |
| TATTTGTAGAATTGATCTGG+AGG | + | chr7_2:6091882-6091901 | Msa1045850:intron | 30.0% | |
| ATTTGTAGAATTGATCTGGA+GGG | + | chr7_2:6091883-6091902 | Msa1045850:intron | 30.0% | |
| !!! | AGAGTGAAGGAATTTTTTCA+AGG | + | chr7_2:6091916-6091935 | Msa1045850:CDS | 30.0% |
| !!! | GAGTGAAGGAATTTTTTCAA+GGG | + | chr7_2:6091917-6091936 | Msa1045850:CDS | 30.0% |
| !! | TGCTTTGAAATATGTATGCA+AGG | + | chr7_2:6092035-6092054 | Msa1045850:CDS | 30.0% |
| TGTATTGTAGACTTGTATGA+TGG | + | chr7_2:6092068-6092087 | Msa1045850:intron | 30.0% | |
| TTCTTCTTCTTCTTGTGATA+TGG | + | chr7_2:6092188-6092207 | Msa1045850:intron | 30.0% | |
| AAAACGATTCATAAACCTGA+GGG | - | chr7_2:6092521-6092540 | None:intergenic | 30.0% | |
| AAAAACGATTCATAAACCTG+AGG | - | chr7_2:6092522-6092541 | None:intergenic | 30.0% | |
| !! | AAATGACCATAAGAGTGTTA+AGG | + | chr7_2:6092563-6092582 | Msa1045850:CDS | 30.0% |
| TGAAAGATTTCGAGAAACGA+AGG | + | chr7_2:6091773-6091792 | Msa1045850:CDS | 35.0% | |
| ! | TTTCAAACCTTTTTGCCAGA+TGG | + | chr7_2:6091961-6091980 | Msa1045850:CDS | 35.0% |
| TTCAAATCCATCTGGCAAAA+AGG | - | chr7_2:6091971-6091990 | None:intergenic | 35.0% | |
| AGTGAGATTTCAAATCCATC+TGG | - | chr7_2:6091979-6091998 | None:intergenic | 35.0% | |
| !!! | ATCACTTTTGGTTTCTTTGG+TGG | - | chr7_2:6092003-6092022 | None:intergenic | 35.0% |
| !!! | GTGATCACTTTTGGTTTCTT+TGG | - | chr7_2:6092006-6092025 | None:intergenic | 35.0% |
| GAAATATGTATGCAAGGTGA+AGG | + | chr7_2:6092041-6092060 | Msa1045850:CDS | 35.0% | |
| ! | GCTTTTACACTTAAGTTCCT+TGG | + | chr7_2:6092279-6092298 | Msa1045850:intron | 35.0% |
| TAAGCAAAACACATACCGTT+TGG | - | chr7_2:6092596-6092615 | None:intergenic | 35.0% | |
| TAAACTCATCAACAAGATCC+TGG | - | chr7_2:6092734-6092753 | None:intergenic | 35.0% | |
| TGAAAGATTTCGAGAAACGA+AGG | + | chr7_2:6091773-6091792 | Msa1045850:CDS | 35.0% | |
| ! | TTTCAAACCTTTTTGCCAGA+TGG | + | chr7_2:6091961-6091980 | Msa1045850:CDS | 35.0% |
| TTCAAATCCATCTGGCAAAA+AGG | - | chr7_2:6091971-6091990 | None:intergenic | 35.0% | |
| AGTGAGATTTCAAATCCATC+TGG | - | chr7_2:6091979-6091998 | None:intergenic | 35.0% | |
| !!! | ATCACTTTTGGTTTCTTTGG+TGG | - | chr7_2:6092003-6092022 | None:intergenic | 35.0% |
| !!! | GTGATCACTTTTGGTTTCTT+TGG | - | chr7_2:6092006-6092025 | None:intergenic | 35.0% |
| GAAATATGTATGCAAGGTGA+AGG | + | chr7_2:6092041-6092060 | Msa1045850:CDS | 35.0% | |
| ! | GCTTTTACACTTAAGTTCCT+TGG | + | chr7_2:6092279-6092298 | Msa1045850:intron | 35.0% |
| TAAGCAAAACACATACCGTT+TGG | - | chr7_2:6092596-6092615 | None:intergenic | 35.0% | |
| TAAACTCATCAACAAGATCC+TGG | - | chr7_2:6092734-6092753 | None:intergenic | 35.0% | |
| !!! | TTCAATTTTTCAAGGCCACC+AGG | + | chr7_2:6092713-6092732 | Msa1045850:CDS | 40.0% |
| !!! | TTCAATTTTTCAAGGCCACC+AGG | + | chr7_2:6092713-6092732 | Msa1045850:CDS | 40.0% |
| TAGAATTGATCTGGAGGGTG+TGG | + | chr7_2:6091888-6091907 | Msa1045850:intron | 45.0% | |
| GAAATCGAGTCTGCATGCAA+AGG | - | chr7_2:6092491-6092510 | None:intergenic | 45.0% | |
| GGAGCTCCTTAACACTCTTA+TGG | - | chr7_2:6092572-6092591 | None:intergenic | 45.0% | |
| TGTTAAGGAGCTCCACCAAA+CGG | + | chr7_2:6092578-6092597 | Msa1045850:CDS | 45.0% | |
| GCAAAACACATACCGTTTGG+TGG | - | chr7_2:6092593-6092612 | None:intergenic | 45.0% | |
| ACTCATCAACAAGATCCTGG+TGG | - | chr7_2:6092731-6092750 | None:intergenic | 45.0% | |
| TAGAATTGATCTGGAGGGTG+TGG | + | chr7_2:6091888-6091907 | Msa1045850:intron | 45.0% | |
| GAAATCGAGTCTGCATGCAA+AGG | - | chr7_2:6092491-6092510 | None:intergenic | 45.0% | |
| GGAGCTCCTTAACACTCTTA+TGG | - | chr7_2:6092572-6092591 | None:intergenic | 45.0% | |
| TGTTAAGGAGCTCCACCAAA+CGG | + | chr7_2:6092578-6092597 | Msa1045850:CDS | 45.0% | |
| GCAAAACACATACCGTTTGG+TGG | - | chr7_2:6092593-6092612 | None:intergenic | 45.0% | |
| ACTCATCAACAAGATCCTGG+TGG | - | chr7_2:6092731-6092750 | None:intergenic | 45.0% | |
| ! | AATTGATCTGGAGGGTGTGG+TGG | + | chr7_2:6091891-6091910 | Msa1045850:CDS | 50.0% |
| TCGATTTCGACGTAACCCTC+AGG | + | chr7_2:6092503-6092522 | Msa1045850:CDS | 50.0% | |
| ! | AATTGATCTGGAGGGTGTGG+TGG | + | chr7_2:6091891-6091910 | Msa1045850:CDS | 50.0% |
| TCGATTTCGACGTAACCCTC+AGG | + | chr7_2:6092503-6092522 | Msa1045850:CDS | 50.0% | |
| GGGTGTGGTGGCAAGAGTGA+AGG | + | chr7_2:6091903-6091922 | Msa1045850:CDS | 60.0% | |
| GGGTGTGGTGGCAAGAGTGA+AGG | + | chr7_2:6091903-6091922 | Msa1045850:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 6091703 | 6092770 | 6091703 | ID=Msa1045850;Name=Msa1045850 |
| chr7_2 | mRNA | 6091703 | 6092770 | 6091703 | ID=Msa1045850-mRNA-1;Parent=Msa1045850;Name=Msa1045850-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0|0|0.5|1|1|4|0|141 |
| chr7_2 | exon | 6091703 | 6091794 | 6091703 | ID=Msa1045850-mRNA-1:exon:1337;Parent=Msa1045850-mRNA-1 |
| chr7_2 | exon | 6091891 | 6092062 | 6091891 | ID=Msa1045850-mRNA-1:exon:1338;Parent=Msa1045850-mRNA-1 |
| chr7_2 | exon | 6092501 | 6092599 | 6092501 | ID=Msa1045850-mRNA-1:exon:1339;Parent=Msa1045850-mRNA-1 |
| chr7_2 | exon | 6092708 | 6092770 | 6092708 | ID=Msa1045850-mRNA-1:exon:1340;Parent=Msa1045850-mRNA-1 |
| chr7_2 | CDS | 6091703 | 6091794 | 6091703 | ID=Msa1045850-mRNA-1:cds;Parent=Msa1045850-mRNA-1 |
| chr7_2 | CDS | 6091891 | 6092062 | 6091891 | ID=Msa1045850-mRNA-1:cds;Parent=Msa1045850-mRNA-1 |
| chr7_2 | CDS | 6092501 | 6092599 | 6092501 | ID=Msa1045850-mRNA-1:cds;Parent=Msa1045850-mRNA-1 |
| chr7_2 | CDS | 6092708 | 6092770 | 6092708 | ID=Msa1045850-mRNA-1:cds;Parent=Msa1045850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
