AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1046160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1046160 MtrunA17_Chr7g0214071 91.051 257 10 6 1 246 1 255 9.37e-153 425
Msa1046160 MtrunA17_Chr8g0385991 59.669 181 61 4 1 171 1 179 7.44e-73 221
Msa1046160 MtrunA17_Chr3g0131911 53.488 215 75 5 1 203 1 202 3.11e-69 213
Msa1046160 MtrunA17_Chr4g0047841 56.000 175 48 3 14 159 14 188 4.47e-60 193
Msa1046160 MtrunA17_Chr2g0318101 54.545 176 63 3 1 159 1 176 4.32e-59 191
Msa1046160 MtrunA17_Chr7g0252971 52.542 177 65 5 12 170 5 180 6.07e-59 190
Msa1046160 MtrunA17_Chr5g0417791 58.228 158 54 3 13 160 1 156 6.94e-59 187
Msa1046160 MtrunA17_Chr4g0042561 59.119 159 53 4 15 163 9 165 1.05e-58 187
Msa1046160 MtrunA17_Chr7g0263931 50.802 187 80 4 12 186 8 194 5.60e-57 184
Msa1046160 MtrunA17_Chr3g0124761 55.621 169 63 3 12 171 4 169 1.27e-55 179
Msa1046160 MtrunA17_Chr3g0109821 57.988 169 59 6 13 171 4 170 8.06e-55 186
Msa1046160 MtrunA17_Chr2g0309891 53.179 173 64 5 13 172 4 172 3.28e-54 177
Msa1046160 MtrunA17_Chr3g0139331 52.532 158 71 2 12 165 8 165 4.02e-54 177
Msa1046160 MtrunA17_Chr2g0326361 54.605 152 59 2 15 156 14 165 4.31e-54 177
Msa1046160 MtrunA17_Chr1g0147421 51.397 179 76 4 12 185 24 196 5.26e-54 177
Msa1046160 MtrunA17_Chr7g0243371 88.636 88 10 0 60 147 12 99 5.43e-54 170
Msa1046160 MtrunA17_Chr4g0018391 55.556 153 59 4 15 160 7 157 5.61e-54 177
Msa1046160 MtrunA17_Chr4g0060931 53.012 166 68 4 8 165 10 173 6.34e-54 177
Msa1046160 MtrunA17_Chr5g0433781 44.141 256 107 9 13 246 4 245 8.93e-54 183
Msa1046160 MtrunA17_Chr3g0091921 49.425 174 78 3 6 171 7 178 5.38e-53 173
Msa1046160 MtrunA17_Chr2g0309331 50.617 162 72 3 6 160 1 161 8.21e-53 174
Msa1046160 MtrunA17_Chr4g0017921 56.863 153 56 5 15 160 8 157 9.99e-53 174
Msa1046160 MtrunA17_Chr2g0316971 51.250 160 70 2 12 163 20 179 1.84e-52 174
Msa1046160 MtrunA17_Chr6g0484441 44.076 211 104 5 12 210 2 210 1.95e-52 172
Msa1046160 MtrunA17_Chr6g0481091 41.558 231 102 6 13 235 4 209 2.40e-52 169
Msa1046160 MtrunA17_Chr5g0405211 47.849 186 85 5 15 193 8 188 2.55e-52 173
Msa1046160 MtrunA17_Chr5g0398971 52.597 154 64 3 15 160 7 159 4.00e-52 172
Msa1046160 MtrunA17_Chr8g0384721 51.111 180 71 5 11 179 3 176 7.83e-52 170
Msa1046160 MtrunA17_Chr2g0318081 54.658 161 65 3 11 165 12 170 9.47e-52 171
Msa1046160 MtrunA17_Chr1g0200561 51.235 162 70 3 15 169 19 178 1.02e-51 171
Msa1046160 MtrunA17_Chr4g0056541 50.920 163 71 3 14 169 6 166 1.87e-51 171
Msa1046160 MtrunA17_Chr8g0372121 50.299 167 74 4 15 174 6 170 2.66e-51 169
Msa1046160 MtrunA17_Chr1g0183741 45.263 190 90 4 15 193 10 196 3.16e-51 168
Msa1046160 MtrunA17_Chr6g0453451 49.701 167 74 4 7 165 12 176 4.42e-51 169
Msa1046160 MtrunA17_Chr8g0359921 55.769 156 59 4 12 159 11 164 4.98e-50 166
Msa1046160 MtrunA17_Chr3g0130731 54.375 160 59 4 11 160 3 158 1.43e-49 164
Msa1046160 MtrunA17_Chr6g0461661 46.667 180 82 3 8 179 11 184 2.50e-49 166
Msa1046160 MtrunA17_Chr5g0417001 47.514 181 80 3 1 167 1 180 3.72e-49 166
Msa1046160 MtrunA17_Chr7g0261411 52.055 146 66 2 15 157 10 154 4.15e-49 163
Msa1046160 MtrunA17_Chr8g0346001 46.512 172 72 3 7 160 7 176 8.29e-49 166
Msa1046160 MtrunA17_Chr8g0361731 45.604 182 83 3 1 167 1 181 9.91e-49 165
Msa1046160 MtrunA17_Chr5g0442771 50.000 184 74 6 8 175 12 193 3.01e-48 161
Msa1046160 MtrunA17_Chr2g0312321 46.032 189 76 7 12 190 8 180 5.61e-48 160
Msa1046160 MtrunA17_Chr7g0253011 52.229 157 65 4 13 159 15 171 7.56e-48 162
Msa1046160 MtrunA17_Chr4g0054791 44.221 199 100 5 15 202 6 204 2.83e-47 159
Msa1046160 MtrunA17_Chr5g0400461 48.428 159 72 2 11 159 2 160 3.99e-47 159
Msa1046160 MtrunA17_Chr2g0311651 43.350 203 93 5 10 191 16 217 2.33e-46 156
Msa1046160 MtrunA17_Chr7g0217721 47.191 178 71 5 9 165 13 188 2.65e-46 157
Msa1046160 MtrunA17_Chr3g0144271 51.613 155 67 4 8 158 16 166 6.33e-46 158
Msa1046160 MtrunA17_Chr3g0130101 48.214 168 71 5 17 173 9 171 1.17e-45 156
Msa1046160 MtrunA17_Chr3g0128151 46.154 182 78 5 15 188 22 191 1.87e-45 160
Msa1046160 MtrunA17_Chr5g0428991 45.455 187 82 5 14 192 24 198 6.39e-45 159
Msa1046160 MtrunA17_Chr2g0311661 46.857 175 71 5 6 160 13 185 9.05e-45 152
Msa1046160 MtrunA17_Chr6g0453131 46.552 174 77 4 1 159 1 173 9.11e-45 154
Msa1046160 MtrunA17_Chr7g0217711 54.074 135 55 3 9 139 13 144 1.46e-44 147
Msa1046160 MtrunA17_Chr3g0128111 45.509 167 74 4 18 176 45 202 1.87e-44 149
Msa1046160 MtrunA17_Chr3g0092671 48.795 166 73 5 17 173 7 169 1.88e-43 154
Msa1046160 MtrunA17_Chr1g0197351 50.888 169 65 4 15 168 42 207 2.58e-43 152
Msa1046160 MtrunA17_Chr1g0201021 48.810 168 70 5 17 173 21 183 6.05e-43 153
Msa1046160 MtrunA17_Chr1g0197361 47.273 165 77 4 17 173 10 172 9.32e-43 152
Msa1046160 MtrunA17_Chr8g0364791 44.706 170 80 4 14 173 5 170 4.27e-42 148
Msa1046160 MtrunA17_Chr8g0384201 43.529 170 82 4 14 173 5 170 5.33e-40 144
Msa1046160 MtrunA17_Chr4g0076731 47.403 154 74 4 17 166 56 206 1.35e-39 142
Msa1046160 MtrunA17_Chr8g0345671 46.622 148 70 4 15 156 11 155 1.92e-38 138
Msa1046160 MtrunA17_Chr4g0038751 43.558 163 83 4 1 159 4 161 7.79e-38 134
Msa1046160 MtrunA17_Chr4g0050701 41.558 154 72 3 15 157 11 157 5.70e-36 126
Msa1046160 MtrunA17_Chr8g0345691 41.333 150 79 4 14 157 11 157 3.78e-33 124
Msa1046160 MtrunA17_Chr3g0113001 50.000 122 53 3 50 165 3 122 4.43e-31 116
Msa1046160 MtrunA17_Chr2g0321631 41.509 159 75 6 16 158 5 161 5.01e-31 115
Msa1046160 MtrunA17_Chr4g0026141 41.139 158 78 6 15 158 5 161 1.97e-30 114
Msa1046160 MtrunA17_Chr8g0384351 40.506 158 72 6 13 167 8 146 1.28e-29 109
Msa1046160 MtrunA17_Chr2g0321741 46.087 115 52 3 46 156 23 131 2.08e-29 113
Msa1046160 MtrunA17_Chr8g0345711 42.636 129 67 3 15 137 12 139 1.98e-27 103
Msa1046160 MtrunA17_Chr7g0266701 32.710 214 103 9 15 192 4 212 3.00e-27 105
Msa1046160 MtrunA17_Chr8g0345731 41.667 132 67 4 15 137 24 154 8.57e-27 102
Msa1046160 MtrunA17_Chr3g0113031 51.515 99 33 3 77 165 5 98 1.16e-26 104
Msa1046160 MtrunA17_Chr8g0345721 36.774 155 62 3 18 137 38 191 1.03e-25 100
Msa1046160 MtrunA17_Chr8g0345741 36.879 141 70 6 28 159 4 134 2.75e-23 92.4
Msa1046160 MtrunA17_Chr8g0345701 37.419 155 69 6 15 149 7 153 4.60e-23 92.4
Msa1046160 MtrunA17_Chr3g0130321 33.533 167 77 7 13 157 5 159 5.39e-19 82.4
Msa1046160 MtrunA17_Chr7g0251661 34.586 133 78 6 10 137 5 133 8.26e-18 77.8
Msa1046160 MtrunA17_Chr7g0251651 34.177 158 93 7 6 157 10 162 8.91e-18 79.0
Msa1046160 MtrunA17_Chr7g0251671 29.940 167 104 7 10 171 5 163 2.78e-17 76.6
Msa1046160 MtrunA17_Chr1g0168571 34.722 144 81 5 23 155 13 154 3.20e-16 76.6
Msa1046160 MtrunA17_Chr3g0113011 50.000 56 28 0 9 64 13 68 3.38e-13 63.2
Msa1046160 MtrunA17_Chr2g0282871 32.653 147 71 8 15 139 53 193 1.29e-12 66.2
Msa1046160 MtrunA17_Chr4g0040541 31.973 147 77 7 15 141 48 191 2.32e-12 65.5
Msa1046160 MtrunA17_Chr4g0046431 29.310 174 97 9 15 166 68 237 1.78e-11 63.2
Msa1046160 MtrunA17_Chr3g0113041 48.214 56 29 0 9 64 13 68 1.85e-11 58.5
Msa1046160 MtrunA17_Chr8g0367761 30.822 146 79 7 15 141 68 210 2.23e-11 62.4
Msa1046160 MtrunA17_Chr2g0324961 28.141 199 101 11 15 191 49 227 6.51e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1046160 AT5G13180.1 56.627 249 91 6 1 235 1 246 5.53e-93 274
Msa1046160 AT2G33480.2 73.457 162 40 2 1 161 1 160 1.32e-86 258
Msa1046160 AT2G33480.1 72.561 164 40 2 1 161 1 162 1.95e-86 258
Msa1046160 AT1G61110.1 58.683 167 50 4 11 159 12 177 4.96e-59 190
Msa1046160 AT3G04070.2 55.882 170 59 4 6 159 1 170 1.47e-58 189
Msa1046160 AT1G69490.1 59.006 161 53 4 15 165 9 166 2.85e-58 186
Msa1046160 AT5G61430.1 55.357 168 65 5 6 165 7 172 6.09e-57 185
Msa1046160 AT1G77450.1 52.747 182 66 5 6 171 1 178 8.76e-57 182
Msa1046160 AT3G04070.1 51.613 186 58 4 6 159 1 186 3.21e-56 184
Msa1046160 AT5G39610.1 52.353 170 71 3 4 165 9 176 4.22e-56 181
Msa1046160 AT5G07680.1 54.938 162 63 4 12 165 14 173 4.49e-56 182
Msa1046160 AT5G07680.2 55.975 159 60 4 15 165 3 159 6.70e-56 181
Msa1046160 AT3G15510.1 57.595 158 50 3 19 159 21 178 2.40e-55 181
Msa1046160 AT1G65910.1 41.016 256 117 8 13 245 4 248 5.55e-55 186
Msa1046160 AT2G24430.2 53.704 162 70 2 9 165 10 171 9.95e-55 179
Msa1046160 AT2G24430.1 53.704 162 70 2 9 165 10 171 9.95e-55 179
Msa1046160 AT5G17260.1 54.321 162 63 3 13 165 4 163 2.00e-54 182
Msa1046160 AT1G33280.1 53.947 152 62 2 15 160 8 157 3.17e-54 177
Msa1046160 AT4G27410.2 52.096 167 72 3 12 172 11 175 4.61e-54 176
Msa1046160 AT3G03200.1 47.179 195 90 4 13 198 4 194 5.85e-54 181
Msa1046160 AT3G18400.1 54.088 159 66 4 12 165 2 158 8.95e-54 176
Msa1046160 AT1G12260.2 51.786 168 71 5 15 174 7 172 9.64e-54 177
Msa1046160 AT4G10350.1 54.839 155 59 4 15 160 9 161 1.61e-53 176
Msa1046160 AT1G54330.1 59.211 152 51 3 15 159 6 153 1.81e-53 175
Msa1046160 AT1G12260.1 53.165 158 65 4 15 165 7 162 3.29e-53 177
Msa1046160 AT1G62700.1 52.941 170 69 5 14 174 6 173 6.36e-53 176
Msa1046160 AT1G62700.2 52.941 170 69 5 14 174 6 173 6.36e-53 176
Msa1046160 AT1G76420.1 52.795 161 68 4 12 166 19 177 1.27e-52 174
Msa1046160 AT3G04060.1 55.484 155 60 4 13 159 18 171 1.54e-52 174
Msa1046160 AT2G18060.3 46.569 204 90 7 15 210 9 201 2.29e-52 174
Msa1046160 AT2G18060.1 46.569 204 90 7 15 210 9 201 2.29e-52 174
Msa1046160 AT5G53950.1 53.595 153 63 2 15 159 17 169 2.97e-52 174
Msa1046160 AT5G18270.2 54.194 155 62 3 13 159 19 172 4.18e-52 172
Msa1046160 AT5G66300.1 53.012 166 66 5 4 160 1 163 4.36e-52 171
Msa1046160 AT5G18270.1 54.194 155 62 3 13 159 19 172 8.31e-52 171
Msa1046160 AT1G01720.1 53.939 165 63 4 13 167 5 166 1.11e-51 170
Msa1046160 AT5G62380.2 54.777 157 58 6 13 160 5 157 1.19e-51 171
Msa1046160 AT5G62380.1 54.777 157 58 6 13 160 5 157 1.19e-51 171
Msa1046160 AT3G15170.1 51.923 156 67 3 12 159 17 172 1.50e-51 170
Msa1046160 AT4G27410.3 47.283 184 72 3 12 172 11 192 2.35e-51 170
Msa1046160 AT3G17730.1 52.258 155 64 3 13 159 4 156 2.50e-51 167
Msa1046160 AT4G36160.2 51.534 163 68 4 15 168 14 174 2.57e-51 171
Msa1046160 AT4G36160.1 51.534 163 68 4 15 168 10 170 3.12e-51 171
Msa1046160 AT4G36160.3 51.534 163 68 4 15 168 10 170 3.12e-51 171
Msa1046160 AT5G46590.1 51.899 158 66 3 11 159 2 158 4.09e-51 169
Msa1046160 AT1G33060.1 46.429 196 83 5 15 197 24 210 8.25e-51 176
Msa1046160 AT1G33060.2 46.429 196 83 5 15 197 24 210 9.09e-51 176
Msa1046160 AT1G52890.1 52.500 160 68 3 12 165 11 168 9.21e-51 168
Msa1046160 AT1G71930.2 51.974 152 64 3 15 159 9 158 1.34e-50 168
Msa1046160 AT1G71930.1 51.974 152 64 3 15 159 9 158 1.34e-50 168
Msa1046160 AT1G79580.3 50.625 160 72 2 7 160 9 167 1.48e-50 169
Msa1046160 AT1G79580.5 50.625 160 72 2 7 160 9 167 1.48e-50 169
Msa1046160 AT1G79580.4 50.625 160 72 2 7 160 9 167 1.48e-50 169
Msa1046160 AT1G79580.2 50.625 160 72 2 7 160 9 167 1.48e-50 169
Msa1046160 AT1G79580.1 50.625 160 72 2 7 160 9 167 1.48e-50 169
Msa1046160 AT3G12977.1 51.250 160 69 4 12 164 15 172 2.09e-50 166
Msa1046160 AT5G63790.1 46.860 207 89 5 2 197 37 233 3.03e-50 167
Msa1046160 AT2G46770.1 40.529 227 110 5 1 205 2 225 3.25e-50 168
Msa1046160 AT5G63790.2 46.860 207 89 5 2 197 47 243 3.75e-50 167
Msa1046160 AT3G29035.1 50.898 167 72 3 7 165 16 180 4.67e-50 166
Msa1046160 AT1G52880.1 54.321 162 58 3 19 164 21 182 1.55e-49 165
Msa1046160 AT3G10500.1 50.898 167 72 3 15 173 9 173 2.49e-49 170
Msa1046160 AT3G10480.1 52.469 162 66 3 15 167 27 186 4.59e-49 167
Msa1046160 AT3G10490.1 51.852 162 67 3 15 167 27 186 4.64e-49 161
Msa1046160 AT4G35580.2 44.651 215 89 6 15 218 9 204 5.71e-49 169
Msa1046160 AT4G35580.3 44.651 215 89 6 15 218 9 204 5.92e-49 169
Msa1046160 AT4G35580.1 44.651 215 89 6 15 218 9 204 6.06e-49 168
Msa1046160 AT3G15500.1 51.553 161 70 3 12 166 11 169 6.11e-49 164
Msa1046160 AT5G04410.1 52.096 167 70 3 15 173 9 173 6.38e-49 169
Msa1046160 AT4G17980.1 49.057 159 71 2 11 159 2 160 1.40e-48 161
Msa1046160 AT5G08790.1 46.226 212 84 7 12 197 4 211 1.70e-48 161
Msa1046160 AT4G17980.2 49.057 159 71 2 11 159 2 160 1.80e-48 162
Msa1046160 AT3G10480.2 52.174 161 67 3 15 167 27 185 6.09e-48 164
Msa1046160 AT3G61910.1 45.143 175 72 5 7 159 3 175 7.20e-48 161
Msa1046160 AT1G56010.2 47.853 163 73 4 12 164 16 176 9.12e-48 160
Msa1046160 AT2G33480.3 69.524 105 27 2 60 161 3 105 9.60e-48 157
Msa1046160 AT5G46590.2 51.034 145 65 2 11 150 2 145 1.26e-47 159
Msa1046160 AT5G39820.1 39.827 231 107 6 2 205 8 233 2.03e-47 160
Msa1046160 AT1G32770.1 46.471 170 70 4 10 160 11 178 2.34e-47 160
Msa1046160 AT3G10490.2 51.852 162 67 3 15 167 27 186 2.61e-47 163
Msa1046160 AT4G28530.1 47.305 167 68 4 14 161 9 174 7.43e-45 154
Msa1046160 AT1G26870.1 41.872 203 98 4 15 197 16 218 2.02e-44 154
Msa1046160 AT3G10480.3 43.590 195 66 3 15 167 27 219 3.96e-44 155
Msa1046160 AT1G32510.1 39.130 230 117 5 15 222 6 234 4.87e-44 150
Msa1046160 AT1G34190.1 49.701 167 70 5 17 173 18 180 7.66e-44 155
Msa1046160 AT1G34180.3 48.795 166 73 4 17 173 18 180 3.26e-43 152
Msa1046160 AT1G34180.1 48.795 166 73 4 17 173 18 180 1.86e-42 152
Msa1046160 AT3G49530.2 46.405 153 73 3 15 159 13 164 2.66e-42 149
Msa1046160 AT5G24590.2 47.059 170 71 5 15 170 13 177 3.78e-42 149
Msa1046160 AT3G49530.1 46.405 153 73 3 15 159 13 164 3.79e-42 149
Msa1046160 AT1G34180.4 45.506 178 73 4 17 173 18 192 4.55e-42 149
Msa1046160 AT5G64060.1 44.444 171 85 3 11 173 2 170 1.21e-41 145
Msa1046160 AT3G12910.1 47.826 161 64 5 17 157 23 183 1.57e-41 144
Msa1046160 AT5G09330.5 43.147 197 98 5 11 196 2 195 1.64e-41 148
Msa1046160 AT5G09330.2 43.147 197 98 5 11 196 2 195 1.64e-41 148
Msa1046160 AT5G09330.4 43.147 197 98 5 11 196 2 195 1.64e-41 148
Msa1046160 AT5G09330.3 43.147 197 98 5 11 196 2 195 1.64e-41 148
Msa1046160 AT5G09330.1 43.147 197 98 5 11 196 2 195 1.64e-41 148
Msa1046160 AT1G34180.2 45.506 178 73 4 17 173 18 192 1.92e-41 149
Msa1046160 AT2G43000.1 49.324 148 66 4 17 157 20 165 2.08e-41 143
Msa1046160 AT2G17040.1 48.980 147 69 3 17 159 8 152 2.16e-41 143
Msa1046160 AT2G02450.1 49.333 150 70 4 17 162 53 200 1.45e-40 143
Msa1046160 AT2G02450.2 49.333 150 70 4 17 162 53 200 2.27e-40 144
Msa1046160 AT5G22290.1 36.406 217 128 4 17 228 23 234 7.94e-39 138
Msa1046160 AT2G27300.1 44.521 146 71 3 15 156 14 153 9.69e-37 132
Msa1046160 AT3G44290.2 42.236 161 80 4 17 173 16 167 1.34e-36 129
Msa1046160 AT5G04395.1 44.828 145 63 2 12 139 25 169 9.30e-36 125
Msa1046160 AT3G44290.1 42.236 161 80 4 17 173 16 167 9.84e-36 130
Msa1046160 AT4G10350.2 56.566 99 38 2 65 160 18 114 2.82e-35 127
Msa1046160 AT5G61430.2 56.604 106 39 3 65 165 6 109 2.28e-34 124
Msa1046160 AT1G32870.1 45.000 180 83 6 4 173 1 174 3.57e-33 126
Msa1046160 AT1G32870.2 45.000 180 83 6 4 173 1 174 3.68e-33 126
Msa1046160 AT1G32870.3 45.000 180 83 6 4 173 37 210 6.48e-33 125
Msa1046160 AT5G64530.1 39.634 164 69 4 13 157 1 153 1.19e-32 118
Msa1046160 AT3G12977.2 55.340 103 40 3 66 164 19 119 4.98e-32 117
Msa1046160 AT5G64530.2 44.961 129 58 3 13 139 1 118 7.81e-32 115
Msa1046160 AT1G56010.1 49.524 105 45 2 66 164 7 109 1.77e-30 114
Msa1046160 AT5G14000.1 36.970 165 98 4 1 162 1 162 1.88e-29 110
Msa1046160 AT4G01550.1 36.813 182 99 5 18 192 7 179 2.77e-29 114
Msa1046160 AT1G02230.1 40.113 177 86 8 16 184 4 168 4.27e-29 112
Msa1046160 AT5G14000.2 38.312 154 90 3 1 151 1 152 6.79e-29 107
Msa1046160 AT5G50820.1 39.860 143 79 3 5 145 7 144 7.58e-28 105
Msa1046160 AT1G02250.1 42.105 152 76 5 16 159 4 151 2.64e-27 108
Msa1046160 AT4G01520.1 38.012 171 94 6 16 178 5 171 1.42e-26 105
Msa1046160 AT4G01540.4 38.462 169 92 6 18 178 7 171 2.42e-26 105
Msa1046160 AT4G01540.2 38.462 169 92 6 18 178 7 171 3.40e-26 105
Msa1046160 AT4G01540.3 40.000 165 85 7 18 174 7 165 3.47e-26 105
Msa1046160 AT4G01540.1 40.000 165 85 7 18 174 7 165 4.15e-26 106
Msa1046160 AT5G22380.1 38.462 156 79 5 18 158 8 161 4.76e-25 99.4
Msa1046160 AT3G44350.2 37.975 158 83 5 15 159 5 160 6.59e-25 99.4
Msa1046160 AT3G04420.2 38.411 151 82 5 16 159 4 150 5.06e-24 98.2
Msa1046160 AT3G04420.1 38.411 151 82 5 16 159 4 150 5.44e-24 99.0
Msa1046160 AT3G44350.1 39.568 139 73 4 15 144 5 141 5.50e-23 92.0
Msa1046160 AT4G28530.2 40.310 129 58 3 14 123 9 137 8.14e-23 95.1
Msa1046160 AT2G18060.2 42.276 123 58 5 90 210 2 113 4.63e-22 92.4
Msa1046160 AT1G02220.1 38.125 160 77 7 16 165 4 151 8.16e-22 93.6
Msa1046160 AT3G10490.4 50.575 87 37 2 85 167 2 86 1.67e-21 92.0
Msa1046160 AT3G10490.3 50.575 87 37 2 85 167 2 86 1.67e-21 92.0
Msa1046160 AT2G43000.2 49.412 85 37 3 77 157 5 87 2.39e-19 83.6
Msa1046160 AT1G01010.1 34.810 158 80 7 18 159 6 156 3.42e-17 80.5
Msa1046160 AT3G55210.1 33.143 175 85 8 15 166 11 176 1.67e-16 77.4
Msa1046160 AT5G22290.2 34.532 139 85 3 91 228 2 135 4.57e-16 75.5
Msa1046160 AT3G56530.1 35.032 157 87 7 12 158 49 200 2.60e-15 74.3
Msa1046160 AT5G41090.1 27.950 161 94 5 15 160 8 161 5.80e-14 69.3
Msa1046160 AT5G14000.3 50.000 62 31 0 1 62 1 62 2.60e-13 68.2
Msa1046160 AT4G29230.2 31.034 174 89 9 13 159 45 214 5.94e-13 68.2
Msa1046160 AT4G29230.1 31.034 174 89 9 13 159 46 215 6.11e-13 68.2
Msa1046160 AT1G28470.1 32.927 164 87 10 15 159 77 236 9.49e-13 67.0
Msa1046160 AT4G29230.3 31.034 174 89 9 13 159 46 215 1.11e-12 67.4
Msa1046160 AT5G56620.3 30.573 157 76 7 13 139 41 194 1.30e-11 64.3
Msa1046160 AT5G56620.2 30.573 157 76 7 13 139 41 194 1.48e-11 63.9
Msa1046160 AT5G56620.1 30.573 157 76 7 13 139 41 194 1.71e-11 63.9
Msa1046160 AT4G28500.1 30.303 165 91 8 15 159 59 219 4.64e-11 62.0
Msa1046160 AT3G04430.1 31.206 141 82 4 21 147 6 145 4.84e-11 60.8

Find 90 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCATCCTCATCCTCTTT+TGG 0.172089 7_2:-6548592 Msa1046160:CDS
TCTTAATGCCGACCTCATTT+TGG 0.179661 7_2:+6548475 None:intergenic
TCGGTTCCCATTTGGGTATT+TGG 0.189837 7_2:+6549175 None:intergenic
GTGAAGGAAGGAAGAGAAAA+AGG 0.209589 7_2:+6549739 None:intergenic
CTGTTAGATCGGTTCCCATT+TGG 0.268180 7_2:+6549167 None:intergenic
ATTTGGATTCTTATATTAGA+TGG 0.293501 7_2:+6548384 None:intergenic
ATAAAAGGAAGGGGAGGGAG+GGG 0.307261 7_2:+6548551 None:intergenic
TAGACAGACCTAATAATAAA+AGG 0.323180 7_2:+6548536 None:intergenic
TGTTAGATCGGTTCCCATTT+GGG 0.328133 7_2:+6549168 None:intergenic
CACTTACAGAATCTCTTAAA+AGG 0.329098 7_2:+6548340 None:intergenic
GAGCTACAAACTCTGGTTAC+TGG 0.339051 7_2:-6549145 Msa1046160:CDS
ATCTTTGCAAGTCTGATCCT+TGG 0.370348 7_2:-6549420 Msa1046160:CDS
CCAAGCAGTTGCAGCAACTT+TGG 0.391601 7_2:-6548787 Msa1046160:CDS
TCTTTGCAAGTCTGATCCTT+GGG 0.393386 7_2:-6549419 Msa1046160:CDS
GAAAGGAAAGGAAAGGAAAA+GGG 0.399374 7_2:+6549811 None:intergenic
TAATAAAAGGAAGGGGAGGG+AGG 0.405142 7_2:+6548549 None:intergenic
AGAAAGGAAAGGAAAGGAAA+AGG 0.406342 7_2:+6549810 None:intergenic
CAGTGGAATCACAAATGAAT+TGG 0.418146 7_2:-6548647 Msa1046160:CDS
TTAAGCATTATTTCCAAAAG+AGG 0.440986 7_2:+6548579 None:intergenic
TAAAAGGAAGGGGAGGGAGG+GGG 0.442503 7_2:+6548552 None:intergenic
AAAGAAGCCAAATACCCAAA+TGG 0.451382 7_2:-6549182 Msa1046160:CDS
TCTGGTTACTGGAAAGCAAC+TGG 0.454286 7_2:-6549134 Msa1046160:CDS
TCAAAGAGTCATGAAGTTGT+TGG 0.455914 7_2:-6549089 Msa1046160:CDS
GACTTGCAAAGATCAACTTC+AGG 0.465462 7_2:+6549430 None:intergenic
AAGATCAACTTCAGGAATGA+TGG 0.468508 7_2:+6549438 None:intergenic
TTTCTATGATTTCTTGGCAC+AGG 0.468739 7_2:-6548710 Msa1046160:CDS
TTGAAATGATAAAGAAAGAA+AGG 0.477487 7_2:+6549794 None:intergenic
CTTCATCAGTTGGATGGAAA+CGG 0.481185 7_2:+6549515 None:intergenic
AAGAAGCCAAATACCCAAAT+GGG 0.481949 7_2:-6549181 Msa1046160:CDS
TTCCTCTCACTCCAACCCCT+TGG 0.484311 7_2:-6548982 Msa1046160:intron
GAAAGTGAAAAGAGAGAGAA+GGG 0.488212 7_2:-6549959 Msa1046160:five_prime_UTR
AATAAAAGGAAGGGGAGGGA+GGG 0.488281 7_2:+6548550 None:intergenic
CCAAAGTTGCTGCAACTGCT+TGG 0.489565 7_2:+6548787 None:intergenic
ACAACAAGTTCTTCATCAGT+TGG 0.490523 7_2:+6549505 None:intergenic
CTCAAATTCAAGTTCAAAAG+TGG 0.493719 7_2:-6548737 Msa1046160:CDS
TTTGTGATTCCACTGCTAGC+TGG 0.494748 7_2:+6548655 None:intergenic
GAATAAAGAAAGGTGAAGGA+AGG 0.504180 7_2:+6549727 None:intergenic
ATTATTTCCAAAAGAGGATG+AGG 0.507684 7_2:+6548585 None:intergenic
CGACATTTGTTTGAGTTGAG+TGG 0.507813 7_2:+6549920 None:intergenic
GAATGATGGAAGCAGGTAAA+GGG 0.510410 7_2:+6549452 None:intergenic
CAAGTTCTTCATCAGTTGGA+TGG 0.512113 7_2:+6549509 None:intergenic
GGTTGGAGTGAGAGGAAGTG+AGG 0.514880 7_2:+6548988 None:intergenic
GAAAGGAAAGGAAAAGGGCA+TGG 0.521133 7_2:+6549816 None:intergenic
ACTGCTAGCTGGTGAGGAGG+AGG 0.524725 7_2:+6548666 None:intergenic
ATCTCAAATGTCCCAAAATG+AGG 0.524855 7_2:-6548487 Msa1046160:three_prime_UTR
TGAAAGTGAAAAGAGAGAGA+AGG 0.525592 7_2:-6549960 Msa1046160:five_prime_UTR
AATAGAATAAAGAAAGGTGA+AGG 0.531185 7_2:+6549723 None:intergenic
AGTTTGTAGCTCTGTTAGAT+CGG 0.532621 7_2:+6549156 None:intergenic
GGAATGATGGAAGCAGGTAA+AGG 0.533367 7_2:+6549451 None:intergenic
AAAGAAAGAAAGGAAAGGAA+AGG 0.541538 7_2:+6549804 None:intergenic
GAATAGAATAGAATAAAGAA+AGG 0.542048 7_2:+6549717 None:intergenic
ACTTCAGGAATGATGGAAGC+AGG 0.542259 7_2:+6549445 None:intergenic
CAGACCTAATAATAAAAGGA+AGG 0.543501 7_2:+6548540 None:intergenic
TACAGAATCTCTTAAAAGGA+GGG 0.547157 7_2:+6548344 None:intergenic
GACCAAGGGGTTGGAGTGAG+AGG 0.548262 7_2:+6548980 None:intergenic
CTCATGGTTCAAGAACTGAT+TGG 0.548704 7_2:-6549028 Msa1046160:CDS
AGAAAGACTGACCAAGGGGT+TGG 0.548887 7_2:+6548971 None:intergenic
GTTGGATGGAAACGGAAACC+TGG 0.549587 7_2:+6549523 None:intergenic
TTTGTCGCATATTTCTGAAG+AGG 0.550659 7_2:-6548846 Msa1046160:CDS
TGTTCAATACTTGAAGCGTA+AGG 0.550952 7_2:-6549485 Msa1046160:CDS
AGACCTAATAATAAAAGGAA+GGG 0.556819 7_2:+6548541 None:intergenic
TCTAACAGAGCTACAAACTC+TGG 0.560803 7_2:-6549152 Msa1046160:CDS
TTTCCAAAAGAGGATGAGGA+TGG 0.565330 7_2:+6548589 None:intergenic
TTACAGAATCTCTTAAAAGG+AGG 0.569875 7_2:+6548343 None:intergenic
TCTGATCCTTGGGATTTACC+TGG 0.570788 7_2:-6549409 Msa1046160:intron
GACCTAATAATAAAAGGAAG+GGG 0.571777 7_2:+6548542 None:intergenic
GATTCCACTGCTAGCTGGTG+AGG 0.572585 7_2:+6548660 None:intergenic
AAATTCAAGTTCAAAAGTGG+TGG 0.574345 7_2:-6548734 Msa1046160:CDS
TCCTCCTCACCAGCTAGCAG+TGG 0.575561 7_2:-6548664 Msa1046160:CDS
CGCATATTTCTGAAGAGGAG+AGG 0.580940 7_2:-6548841 Msa1046160:CDS
TACAGAGGCAAACCACCTCA+TGG 0.581454 7_2:-6549044 Msa1046160:CDS
CTAATAATAAAAGGAAGGGG+AGG 0.584791 7_2:+6548545 None:intergenic
ACAGAATCTCTTAAAAGGAG+GGG 0.595413 7_2:+6548345 None:intergenic
ATGATAAAGAAAGAAAGGAA+AGG 0.603952 7_2:+6549799 None:intergenic
TCCACTGCTAGCTGGTGAGG+AGG 0.609090 7_2:+6548663 None:intergenic
ACTGTGGTGTGTCACAATCA+TGG 0.614833 7_2:-6548304 Msa1046160:three_prime_UTR
TACATACCAGGTAAATCCCA+AGG 0.614952 7_2:+6549403 None:intergenic
TCAGTTCTTGAACCATGAGG+TGG 0.615010 7_2:+6549032 None:intergenic
CAAATGTCCCAAAATGAGGT+CGG 0.618561 7_2:-6548483 Msa1046160:three_prime_UTR
GAACTTGTTTACCACACGAG+TGG 0.627379 7_2:-6549639 Msa1046160:five_prime_UTR
GGTGAAGTGAGATTGCCACC+AGG 0.631641 7_2:-6549541 Msa1046160:CDS
TAATAATAAAAGGAAGGGGA+GGG 0.640264 7_2:+6548546 None:intergenic
CAGTTGCAGCAACTTTGGTG+AGG 0.652051 7_2:-6548782 Msa1046160:CDS
TAGGTGATATGGAACAAGAG+AGG 0.664397 7_2:-6549220 Msa1046160:CDS
AAATGTCAAAGCCACTCGTG+TGG 0.666435 7_2:+6549628 None:intergenic
ATATTTCTGAAGAGGAGAGG+TGG 0.674268 7_2:-6548838 Msa1046160:CDS
ATGGGTCAATGAGTCTGACA+AGG 0.679300 7_2:+6549875 None:intergenic
CAATCAGTTCTTGAACCATG+AGG 0.707588 7_2:+6549029 None:intergenic
GGATGGAAACGGAAACCTGG+TGG 0.721884 7_2:+6549526 None:intergenic
GTGTATGTTTGATATCACTG+TGG 0.783042 7_2:-6548320 Msa1046160:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAATTAATATTAATATGAA+TGG - chr7_2:6549288-6549307 Msa1046160:intron 10.0%
!! TGAATTAATATTAATATGAA+TGG - chr7_2:6549288-6549307 Msa1046160:intron 10.0%
!! ATAAAAGAAAAGAAAAGAAA+AGG + chr7_2:6548815-6548834 None:intergenic 15.0%
!!! TGAATTTGTTTGTAATTTAA+AGG - chr7_2:6549253-6549272 Msa1046160:intron 15.0%
!! AATATTAATATGAATGGAAT+TGG - chr7_2:6549294-6549313 Msa1046160:intron 15.0%
!! ATATTAATATGAATGGAATT+GGG - chr7_2:6549295-6549314 Msa1046160:intron 15.0%
!!! GAAAATAAAGAATTTTCATT+TGG + chr7_2:6549828-6549847 None:intergenic 15.0%
!! ATAAAAGAAAAGAAAAGAAA+AGG + chr7_2:6548815-6548834 None:intergenic 15.0%
!!! TGAATTTGTTTGTAATTTAA+AGG - chr7_2:6549253-6549272 Msa1046160:intron 15.0%
!! AATATTAATATGAATGGAAT+TGG - chr7_2:6549294-6549313 Msa1046160:intron 15.0%
!! ATATTAATATGAATGGAATT+GGG - chr7_2:6549295-6549314 Msa1046160:intron 15.0%
!!! GAAAATAAAGAATTTTCATT+TGG + chr7_2:6549828-6549847 None:intergenic 15.0%
!! TTGAAATGATAAAGAAAGAA+AGG + chr7_2:6548401-6548420 None:intergenic 20.0%
!! GAATAGAATAGAATAAAGAA+AGG + chr7_2:6548478-6548497 None:intergenic 20.0%
!! AAAAGAAAAAGAAGATAAGA+TGG - chr7_2:6548602-6548621 Msa1046160:CDS 20.0%
!!! GGATTAATTCTTTTTCTTTT+AGG - chr7_2:6548953-6548972 Msa1046160:intron 20.0%
!! ATTTGTTTGTAATTTAAAGG+TGG - chr7_2:6549256-6549275 Msa1046160:intron 20.0%
!! ATTTGGATTCTTATATTAGA+TGG + chr7_2:6549811-6549830 None:intergenic 20.0%
!! TTGAAATGATAAAGAAAGAA+AGG + chr7_2:6548401-6548420 None:intergenic 20.0%
!! GAATAGAATAGAATAAAGAA+AGG + chr7_2:6548478-6548497 None:intergenic 20.0%
!! AAAAGAAAAAGAAGATAAGA+TGG - chr7_2:6548602-6548621 Msa1046160:CDS 20.0%
!!! GGATTAATTCTTTTTCTTTT+AGG - chr7_2:6548953-6548972 Msa1046160:intron 20.0%
!! ATTTGTTTGTAATTTAAAGG+TGG - chr7_2:6549256-6549275 Msa1046160:intron 20.0%
!! ATTTGGATTCTTATATTAGA+TGG + chr7_2:6549811-6549830 None:intergenic 20.0%
!! GTGTCTTCTTTTATAGTAAT+GGG + chr7_2:6548338-6548357 None:intergenic 25.0%
!! TGTGTCTTCTTTTATAGTAA+TGG + chr7_2:6548339-6548358 None:intergenic 25.0%
! ATGATAAAGAAAGAAAGGAA+AGG + chr7_2:6548396-6548415 None:intergenic 25.0%
! AATAGAATAAAGAAAGGTGA+AGG + chr7_2:6548472-6548491 None:intergenic 25.0%
!! CTTTGCTACAACTTTTTAAT+GGG - chr7_2:6548511-6548530 Msa1046160:three_prime_UTR 25.0%
!! ATGAATTTTGTGAAGAAGAA+TGG - chr7_2:6548630-6548649 Msa1046160:CDS 25.0%
!!! TCTTTTTCTTTTAGGTGATA+TGG - chr7_2:6548961-6548980 Msa1046160:intron 25.0%
!! TCTTTTTGCAGAATGAAAAT+TGG - chr7_2:6549319-6549338 Msa1046160:intron 25.0%
!! CTTTTTGCAGAATGAAAATT+GGG - chr7_2:6549320-6549339 Msa1046160:intron 25.0%
! TTAAGCATTATTTCCAAAAG+AGG + chr7_2:6549616-6549635 None:intergenic 25.0%
! AGACCTAATAATAAAAGGAA+GGG + chr7_2:6549654-6549673 None:intergenic 25.0%
! TAGACAGACCTAATAATAAA+AGG + chr7_2:6549659-6549678 None:intergenic 25.0%
!!! CATTTTTCAATAAATCACGA+TGG + chr7_2:6549918-6549937 None:intergenic 25.0%
!! GTGTCTTCTTTTATAGTAAT+GGG + chr7_2:6548338-6548357 None:intergenic 25.0%
!! TGTGTCTTCTTTTATAGTAA+TGG + chr7_2:6548339-6548358 None:intergenic 25.0%
! ATGATAAAGAAAGAAAGGAA+AGG + chr7_2:6548396-6548415 None:intergenic 25.0%
! AATAGAATAAAGAAAGGTGA+AGG + chr7_2:6548472-6548491 None:intergenic 25.0%
!! CTTTGCTACAACTTTTTAAT+GGG - chr7_2:6548511-6548530 Msa1046160:three_prime_UTR 25.0%
!! ATGAATTTTGTGAAGAAGAA+TGG - chr7_2:6548630-6548649 Msa1046160:CDS 25.0%
!!! TCTTTTTCTTTTAGGTGATA+TGG - chr7_2:6548961-6548980 Msa1046160:intron 25.0%
!! TCTTTTTGCAGAATGAAAAT+TGG - chr7_2:6549319-6549338 Msa1046160:intron 25.0%
!! CTTTTTGCAGAATGAAAATT+GGG - chr7_2:6549320-6549339 Msa1046160:intron 25.0%
! TTAAGCATTATTTCCAAAAG+AGG + chr7_2:6549616-6549635 None:intergenic 25.0%
! AGACCTAATAATAAAAGGAA+GGG + chr7_2:6549654-6549673 None:intergenic 25.0%
! TAGACAGACCTAATAATAAA+AGG + chr7_2:6549659-6549678 None:intergenic 25.0%
!!! CATTTTTCAATAAATCACGA+TGG + chr7_2:6549918-6549937 None:intergenic 25.0%
AAAGAAAGAAAGGAAAGGAA+AGG + chr7_2:6548391-6548410 None:intergenic 30.0%
CCATTAAAAAGTTGTAGCAA+AGG + chr7_2:6548513-6548532 None:intergenic 30.0%
! CCTTTGCTACAACTTTTTAA+TGG - chr7_2:6548510-6548529 Msa1046160:three_prime_UTR 30.0%
!!! AAAACTCTTGTTTTCTACAG+AGG - chr7_2:6549133-6549152 Msa1046160:CDS 30.0%
! CTCAAATTCAAGTTCAAAAG+TGG - chr7_2:6549455-6549474 Msa1046160:CDS 30.0%
! AAATTCAAGTTCAAAAGTGG+TGG - chr7_2:6549458-6549477 Msa1046160:CDS 30.0%
ATTATTTCCAAAAGAGGATG+AGG + chr7_2:6549610-6549629 None:intergenic 30.0%
TAATAATAAAAGGAAGGGGA+GGG + chr7_2:6549649-6549668 None:intergenic 30.0%
GACCTAATAATAAAAGGAAG+GGG + chr7_2:6549653-6549672 None:intergenic 30.0%
CAGACCTAATAATAAAAGGA+AGG + chr7_2:6549655-6549674 None:intergenic 30.0%
TACAGAATCTCTTAAAAGGA+GGG + chr7_2:6549851-6549870 None:intergenic 30.0%
TTACAGAATCTCTTAAAAGG+AGG + chr7_2:6549852-6549871 None:intergenic 30.0%
CACTTACAGAATCTCTTAAA+AGG + chr7_2:6549855-6549874 None:intergenic 30.0%
AAAGAAAGAAAGGAAAGGAA+AGG + chr7_2:6548391-6548410 None:intergenic 30.0%
CCATTAAAAAGTTGTAGCAA+AGG + chr7_2:6548513-6548532 None:intergenic 30.0%
! CCTTTGCTACAACTTTTTAA+TGG - chr7_2:6548510-6548529 Msa1046160:three_prime_UTR 30.0%
!!! AAAACTCTTGTTTTCTACAG+AGG - chr7_2:6549133-6549152 Msa1046160:CDS 30.0%
! CTCAAATTCAAGTTCAAAAG+TGG - chr7_2:6549455-6549474 Msa1046160:CDS 30.0%
! AAATTCAAGTTCAAAAGTGG+TGG - chr7_2:6549458-6549477 Msa1046160:CDS 30.0%
ATTATTTCCAAAAGAGGATG+AGG + chr7_2:6549610-6549629 None:intergenic 30.0%
TAATAATAAAAGGAAGGGGA+GGG + chr7_2:6549649-6549668 None:intergenic 30.0%
GACCTAATAATAAAAGGAAG+GGG + chr7_2:6549653-6549672 None:intergenic 30.0%
CAGACCTAATAATAAAAGGA+AGG + chr7_2:6549655-6549674 None:intergenic 30.0%
TACAGAATCTCTTAAAAGGA+GGG + chr7_2:6549851-6549870 None:intergenic 30.0%
TTACAGAATCTCTTAAAAGG+AGG + chr7_2:6549852-6549871 None:intergenic 30.0%
CACTTACAGAATCTCTTAAA+AGG + chr7_2:6549855-6549874 None:intergenic 30.0%
TGAAAGTGAAAAGAGAGAGA+AGG - chr7_2:6548232-6548251 Msa1046160:three_prime_UTR 35.0%
GAAAGTGAAAAGAGAGAGAA+GGG - chr7_2:6548233-6548252 Msa1046160:three_prime_UTR 35.0%
GAAAGGAAAGGAAAGGAAAA+GGG + chr7_2:6548384-6548403 None:intergenic 35.0%
AGAAAGGAAAGGAAAGGAAA+AGG + chr7_2:6548385-6548404 None:intergenic 35.0%
TGAAGGAAGGAAGAGAAAAA+GGG + chr7_2:6548455-6548474 None:intergenic 35.0%
GAATAAAGAAAGGTGAAGGA+AGG + chr7_2:6548468-6548487 None:intergenic 35.0%
ACAACAAGTTCTTCATCAGT+TGG + chr7_2:6548690-6548709 None:intergenic 35.0%
TGTTCAATACTTGAAGCGTA+AGG - chr7_2:6548707-6548726 Msa1046160:CDS 35.0%
AAGATCAACTTCAGGAATGA+TGG + chr7_2:6548757-6548776 None:intergenic 35.0%
! GAAAAGAAAAGGTACATACC+AGG + chr7_2:6548804-6548823 None:intergenic 35.0%
TAGTACAAGTCATCATGTTC+CGG + chr7_2:6548909-6548928 None:intergenic 35.0%
AAAGAAGCCAAATACCCAAA+TGG - chr7_2:6549010-6549029 Msa1046160:CDS 35.0%
AAGAAGCCAAATACCCAAAT+GGG - chr7_2:6549011-6549030 Msa1046160:CDS 35.0%
! AGTTTGTAGCTCTGTTAGAT+CGG + chr7_2:6549039-6549058 None:intergenic 35.0%
TCAAAGAGTCATGAAGTTGT+TGG - chr7_2:6549103-6549122 Msa1046160:CDS 35.0%
AAGAAAGAAAGACTGACCAA+GGG + chr7_2:6549229-6549248 None:intergenic 35.0%
AAAGAAAGAAAGACTGACCA+AGG + chr7_2:6549230-6549249 None:intergenic 35.0%
! TTTGTCGCATATTTCTGAAG+AGG - chr7_2:6549346-6549365 Msa1046160:intron 35.0%
! GGTGGTTTTCTATGATTTCT+TGG - chr7_2:6549476-6549495 Msa1046160:CDS 35.0%
TTTCTATGATTTCTTGGCAC+AGG - chr7_2:6549482-6549501 Msa1046160:CDS 35.0%
CAGTGGAATCACAAATGAAT+TGG - chr7_2:6549545-6549564 Msa1046160:CDS 35.0%
CTAATAATAAAAGGAAGGGG+AGG + chr7_2:6549650-6549669 None:intergenic 35.0%
! CTCCCCTTCCTTTTATTATT+AGG - chr7_2:6549648-6549667 Msa1046160:five_prime_UTR 35.0%
ATCTCAAATGTCCCAAAATG+AGG - chr7_2:6549705-6549724 Msa1046160:five_prime_UTR 35.0%
ACAGAATCTCTTAAAAGGAG+GGG + chr7_2:6549850-6549869 None:intergenic 35.0%
GTGTATGTTTGATATCACTG+TGG - chr7_2:6549872-6549891 Msa1046160:five_prime_UTR 35.0%
TGAAAGTGAAAAGAGAGAGA+AGG - chr7_2:6548232-6548251 Msa1046160:three_prime_UTR 35.0%
GAAAGTGAAAAGAGAGAGAA+GGG - chr7_2:6548233-6548252 Msa1046160:three_prime_UTR 35.0%
GAAAGGAAAGGAAAGGAAAA+GGG + chr7_2:6548384-6548403 None:intergenic 35.0%
AGAAAGGAAAGGAAAGGAAA+AGG + chr7_2:6548385-6548404 None:intergenic 35.0%
TGAAGGAAGGAAGAGAAAAA+GGG + chr7_2:6548455-6548474 None:intergenic 35.0%
GAATAAAGAAAGGTGAAGGA+AGG + chr7_2:6548468-6548487 None:intergenic 35.0%
ACAACAAGTTCTTCATCAGT+TGG + chr7_2:6548690-6548709 None:intergenic 35.0%
TGTTCAATACTTGAAGCGTA+AGG - chr7_2:6548707-6548726 Msa1046160:CDS 35.0%
AAGATCAACTTCAGGAATGA+TGG + chr7_2:6548757-6548776 None:intergenic 35.0%
! GAAAAGAAAAGGTACATACC+AGG + chr7_2:6548804-6548823 None:intergenic 35.0%
TAGTACAAGTCATCATGTTC+CGG + chr7_2:6548909-6548928 None:intergenic 35.0%
AAAGAAGCCAAATACCCAAA+TGG - chr7_2:6549010-6549029 Msa1046160:CDS 35.0%
AAGAAGCCAAATACCCAAAT+GGG - chr7_2:6549011-6549030 Msa1046160:CDS 35.0%
! AGTTTGTAGCTCTGTTAGAT+CGG + chr7_2:6549039-6549058 None:intergenic 35.0%
TCAAAGAGTCATGAAGTTGT+TGG - chr7_2:6549103-6549122 Msa1046160:CDS 35.0%
AAGAAAGAAAGACTGACCAA+GGG + chr7_2:6549229-6549248 None:intergenic 35.0%
AAAGAAAGAAAGACTGACCA+AGG + chr7_2:6549230-6549249 None:intergenic 35.0%
! TTTGTCGCATATTTCTGAAG+AGG - chr7_2:6549346-6549365 Msa1046160:intron 35.0%
! GGTGGTTTTCTATGATTTCT+TGG - chr7_2:6549476-6549495 Msa1046160:CDS 35.0%
TTTCTATGATTTCTTGGCAC+AGG - chr7_2:6549482-6549501 Msa1046160:CDS 35.0%
CAGTGGAATCACAAATGAAT+TGG - chr7_2:6549545-6549564 Msa1046160:CDS 35.0%
CTAATAATAAAAGGAAGGGG+AGG + chr7_2:6549650-6549669 None:intergenic 35.0%
! CTCCCCTTCCTTTTATTATT+AGG - chr7_2:6549648-6549667 Msa1046160:five_prime_UTR 35.0%
ATCTCAAATGTCCCAAAATG+AGG - chr7_2:6549705-6549724 Msa1046160:five_prime_UTR 35.0%
ACAGAATCTCTTAAAAGGAG+GGG + chr7_2:6549850-6549869 None:intergenic 35.0%
GTGTATGTTTGATATCACTG+TGG - chr7_2:6549872-6549891 Msa1046160:five_prime_UTR 35.0%
!! CGACATTTGTTTGAGTTGAG+TGG + chr7_2:6548275-6548294 None:intergenic 40.0%
GTGAAGGAAGGAAGAGAAAA+AGG + chr7_2:6548456-6548475 None:intergenic 40.0%
CTTCATCAGTTGGATGGAAA+CGG + chr7_2:6548680-6548699 None:intergenic 40.0%
CAAGTTCTTCATCAGTTGGA+TGG + chr7_2:6548686-6548705 None:intergenic 40.0%
! GAATGATGGAAGCAGGTAAA+GGG + chr7_2:6548743-6548762 None:intergenic 40.0%
GACTTGCAAAGATCAACTTC+AGG + chr7_2:6548765-6548784 None:intergenic 40.0%
ATCTTTGCAAGTCTGATCCT+TGG - chr7_2:6548772-6548791 Msa1046160:CDS 40.0%
TCTTTGCAAGTCTGATCCTT+GGG - chr7_2:6548773-6548792 Msa1046160:CDS 40.0%
TACATACCAGGTAAATCCCA+AGG + chr7_2:6548792-6548811 None:intergenic 40.0%
AGTACAAGTCATCATGTTCC+GGG + chr7_2:6548908-6548927 None:intergenic 40.0%
CTACTGCAAACAATGTCATG+TGG - chr7_2:6548932-6548951 Msa1046160:intron 40.0%
TAGGTGATATGGAACAAGAG+AGG - chr7_2:6548972-6548991 Msa1046160:intron 40.0%
! TGTTAGATCGGTTCCCATTT+GGG + chr7_2:6549027-6549046 None:intergenic 40.0%
TCTAACAGAGCTACAAACTC+TGG - chr7_2:6549040-6549059 Msa1046160:CDS 40.0%
CAATCAGTTCTTGAACCATG+AGG + chr7_2:6549166-6549185 None:intergenic 40.0%
CTCATGGTTCAAGAACTGAT+TGG - chr7_2:6549164-6549183 Msa1046160:CDS 40.0%
AGAAAGAAAGACTGACCAAG+GGG + chr7_2:6549228-6549247 None:intergenic 40.0%
! ATATTTCTGAAGAGGAGAGG+TGG - chr7_2:6549354-6549373 Msa1046160:intron 40.0%
TTTCCAAAAGAGGATGAGGA+TGG + chr7_2:6549606-6549625 None:intergenic 40.0%
CAAATGTCCCAAAATGAGGT+CGG - chr7_2:6549709-6549728 Msa1046160:five_prime_UTR 40.0%
! CTTAATGCCGACCTCATTTT+GGG + chr7_2:6549719-6549738 None:intergenic 40.0%
! TCTTAATGCCGACCTCATTT+TGG + chr7_2:6549720-6549739 None:intergenic 40.0%
!! CGACATTTGTTTGAGTTGAG+TGG + chr7_2:6548275-6548294 None:intergenic 40.0%
GTGAAGGAAGGAAGAGAAAA+AGG + chr7_2:6548456-6548475 None:intergenic 40.0%
CTTCATCAGTTGGATGGAAA+CGG + chr7_2:6548680-6548699 None:intergenic 40.0%
CAAGTTCTTCATCAGTTGGA+TGG + chr7_2:6548686-6548705 None:intergenic 40.0%
! GAATGATGGAAGCAGGTAAA+GGG + chr7_2:6548743-6548762 None:intergenic 40.0%
GACTTGCAAAGATCAACTTC+AGG + chr7_2:6548765-6548784 None:intergenic 40.0%
ATCTTTGCAAGTCTGATCCT+TGG - chr7_2:6548772-6548791 Msa1046160:CDS 40.0%
TCTTTGCAAGTCTGATCCTT+GGG - chr7_2:6548773-6548792 Msa1046160:CDS 40.0%
TACATACCAGGTAAATCCCA+AGG + chr7_2:6548792-6548811 None:intergenic 40.0%
AGTACAAGTCATCATGTTCC+GGG + chr7_2:6548908-6548927 None:intergenic 40.0%
CTACTGCAAACAATGTCATG+TGG - chr7_2:6548932-6548951 Msa1046160:intron 40.0%
TAGGTGATATGGAACAAGAG+AGG - chr7_2:6548972-6548991 Msa1046160:intron 40.0%
! TGTTAGATCGGTTCCCATTT+GGG + chr7_2:6549027-6549046 None:intergenic 40.0%
TCTAACAGAGCTACAAACTC+TGG - chr7_2:6549040-6549059 Msa1046160:CDS 40.0%
CAATCAGTTCTTGAACCATG+AGG + chr7_2:6549166-6549185 None:intergenic 40.0%
CTCATGGTTCAAGAACTGAT+TGG - chr7_2:6549164-6549183 Msa1046160:CDS 40.0%
AGAAAGAAAGACTGACCAAG+GGG + chr7_2:6549228-6549247 None:intergenic 40.0%
! ATATTTCTGAAGAGGAGAGG+TGG - chr7_2:6549354-6549373 Msa1046160:intron 40.0%
TTTCCAAAAGAGGATGAGGA+TGG + chr7_2:6549606-6549625 None:intergenic 40.0%
CAAATGTCCCAAAATGAGGT+CGG - chr7_2:6549709-6549728 Msa1046160:five_prime_UTR 40.0%
! CTTAATGCCGACCTCATTTT+GGG + chr7_2:6549719-6549738 None:intergenic 40.0%
! TCTTAATGCCGACCTCATTT+TGG + chr7_2:6549720-6549739 None:intergenic 40.0%
ATGGGTCAATGAGTCTGACA+AGG + chr7_2:6548320-6548339 None:intergenic 45.0%
GAAAGGAAAGGAAAAGGGCA+TGG + chr7_2:6548379-6548398 None:intergenic 45.0%
! GAACTTGTTTACCACACGAG+TGG - chr7_2:6548553-6548572 Msa1046160:three_prime_UTR 45.0%
AAATGTCAAAGCCACTCGTG+TGG + chr7_2:6548567-6548586 None:intergenic 45.0%
! GGAATGATGGAAGCAGGTAA+AGG + chr7_2:6548744-6548763 None:intergenic 45.0%
! ACTTCAGGAATGATGGAAGC+AGG + chr7_2:6548750-6548769 None:intergenic 45.0%
TCTGATCCTTGGGATTTACC+TGG - chr7_2:6548783-6548802 Msa1046160:CDS 45.0%
GCACAGACAGACACAGATAT+CGG - chr7_2:6548852-6548871 Msa1046160:CDS 45.0%
CACAGATATCGGACACAACA+TGG - chr7_2:6548863-6548882 Msa1046160:CDS 45.0%
TCGGTTCCCATTTGGGTATT+TGG + chr7_2:6549020-6549039 None:intergenic 45.0%
! CTGTTAGATCGGTTCCCATT+TGG + chr7_2:6549028-6549047 None:intergenic 45.0%
GAGCTACAAACTCTGGTTAC+TGG - chr7_2:6549047-6549066 Msa1046160:CDS 45.0%
TCTGGTTACTGGAAAGCAAC+TGG - chr7_2:6549058-6549077 Msa1046160:CDS 45.0%
TCAGTTCTTGAACCATGAGG+TGG + chr7_2:6549163-6549182 None:intergenic 45.0%
! CGCATATTTCTGAAGAGGAG+AGG - chr7_2:6549351-6549370 Msa1046160:intron 45.0%
! AGGAGAGGTGGTGCTAAAAA+TGG - chr7_2:6549366-6549385 Msa1046160:intron 45.0%
! AGGTGGTGCTAAAAATGGAG+AGG - chr7_2:6549371-6549390 Msa1046160:intron 45.0%
TTTGTGATTCCACTGCTAGC+TGG + chr7_2:6549540-6549559 None:intergenic 45.0%
! CTTCCATCCTCATCCTCTTT+TGG - chr7_2:6549600-6549619 Msa1046160:five_prime_UTR 45.0%
AATAAAAGGAAGGGGAGGGA+GGG + chr7_2:6549645-6549664 None:intergenic 45.0%
TAATAAAAGGAAGGGGAGGG+AGG + chr7_2:6549646-6549665 None:intergenic 45.0%
ACTGTGGTGTGTCACAATCA+TGG - chr7_2:6549888-6549907 Msa1046160:five_prime_UTR 45.0%
ATGGGTCAATGAGTCTGACA+AGG + chr7_2:6548320-6548339 None:intergenic 45.0%
GAAAGGAAAGGAAAAGGGCA+TGG + chr7_2:6548379-6548398 None:intergenic 45.0%
! GAACTTGTTTACCACACGAG+TGG - chr7_2:6548553-6548572 Msa1046160:three_prime_UTR 45.0%
AAATGTCAAAGCCACTCGTG+TGG + chr7_2:6548567-6548586 None:intergenic 45.0%
! GGAATGATGGAAGCAGGTAA+AGG + chr7_2:6548744-6548763 None:intergenic 45.0%
! ACTTCAGGAATGATGGAAGC+AGG + chr7_2:6548750-6548769 None:intergenic 45.0%
TCTGATCCTTGGGATTTACC+TGG - chr7_2:6548783-6548802 Msa1046160:CDS 45.0%
GCACAGACAGACACAGATAT+CGG - chr7_2:6548852-6548871 Msa1046160:CDS 45.0%
CACAGATATCGGACACAACA+TGG - chr7_2:6548863-6548882 Msa1046160:CDS 45.0%
TCGGTTCCCATTTGGGTATT+TGG + chr7_2:6549020-6549039 None:intergenic 45.0%
! CTGTTAGATCGGTTCCCATT+TGG + chr7_2:6549028-6549047 None:intergenic 45.0%
GAGCTACAAACTCTGGTTAC+TGG - chr7_2:6549047-6549066 Msa1046160:CDS 45.0%
TCTGGTTACTGGAAAGCAAC+TGG - chr7_2:6549058-6549077 Msa1046160:CDS 45.0%
TCAGTTCTTGAACCATGAGG+TGG + chr7_2:6549163-6549182 None:intergenic 45.0%
! CGCATATTTCTGAAGAGGAG+AGG - chr7_2:6549351-6549370 Msa1046160:intron 45.0%
! AGGAGAGGTGGTGCTAAAAA+TGG - chr7_2:6549366-6549385 Msa1046160:intron 45.0%
! AGGTGGTGCTAAAAATGGAG+AGG - chr7_2:6549371-6549390 Msa1046160:intron 45.0%
TTTGTGATTCCACTGCTAGC+TGG + chr7_2:6549540-6549559 None:intergenic 45.0%
! CTTCCATCCTCATCCTCTTT+TGG - chr7_2:6549600-6549619 Msa1046160:five_prime_UTR 45.0%
AATAAAAGGAAGGGGAGGGA+GGG + chr7_2:6549645-6549664 None:intergenic 45.0%
TAATAAAAGGAAGGGGAGGG+AGG + chr7_2:6549646-6549665 None:intergenic 45.0%
ACTGTGGTGTGTCACAATCA+TGG - chr7_2:6549888-6549907 Msa1046160:five_prime_UTR 45.0%
GTTGGATGGAAACGGAAACC+TGG + chr7_2:6548672-6548691 None:intergenic 50.0%
TACAGAGGCAAACCACCTCA+TGG - chr7_2:6549148-6549167 Msa1046160:CDS 50.0%
AGAAAGACTGACCAAGGGGT+TGG + chr7_2:6549224-6549243 None:intergenic 50.0%
CCAAAGTTGCTGCAACTGCT+TGG + chr7_2:6549408-6549427 None:intergenic 50.0%
CCAAGCAGTTGCAGCAACTT+TGG - chr7_2:6549405-6549424 Msa1046160:intron 50.0%
CAGTTGCAGCAACTTTGGTG+AGG - chr7_2:6549410-6549429 Msa1046160:CDS 50.0%
ATAAAAGGAAGGGGAGGGAG+GGG + chr7_2:6549644-6549663 None:intergenic 50.0%
GTTGGATGGAAACGGAAACC+TGG + chr7_2:6548672-6548691 None:intergenic 50.0%
TACAGAGGCAAACCACCTCA+TGG - chr7_2:6549148-6549167 Msa1046160:CDS 50.0%
AGAAAGACTGACCAAGGGGT+TGG + chr7_2:6549224-6549243 None:intergenic 50.0%
CCAAAGTTGCTGCAACTGCT+TGG + chr7_2:6549408-6549427 None:intergenic 50.0%
CCAAGCAGTTGCAGCAACTT+TGG - chr7_2:6549405-6549424 Msa1046160:intron 50.0%
CAGTTGCAGCAACTTTGGTG+AGG - chr7_2:6549410-6549429 Msa1046160:CDS 50.0%
ATAAAAGGAAGGGGAGGGAG+GGG + chr7_2:6549644-6549663 None:intergenic 50.0%
GGTGAAGTGAGATTGCCACC+AGG - chr7_2:6548651-6548670 Msa1046160:CDS 55.0%
GGATGGAAACGGAAACCTGG+TGG + chr7_2:6548669-6548688 None:intergenic 55.0%
CACTGACACGTTCAGACACC+CGG - chr7_2:6548887-6548906 Msa1046160:intron 55.0%
GGTTGGAGTGAGAGGAAGTG+AGG + chr7_2:6549207-6549226 None:intergenic 55.0%
TTCCTCTCACTCCAACCCCT+TGG - chr7_2:6549210-6549229 Msa1046160:CDS 55.0%
GATTCCACTGCTAGCTGGTG+AGG + chr7_2:6549535-6549554 None:intergenic 55.0%
TAAAAGGAAGGGGAGGGAGG+GGG + chr7_2:6549643-6549662 None:intergenic 55.0%
GGTGAAGTGAGATTGCCACC+AGG - chr7_2:6548651-6548670 Msa1046160:CDS 55.0%
GGATGGAAACGGAAACCTGG+TGG + chr7_2:6548669-6548688 None:intergenic 55.0%
CACTGACACGTTCAGACACC+CGG - chr7_2:6548887-6548906 Msa1046160:intron 55.0%
GGTTGGAGTGAGAGGAAGTG+AGG + chr7_2:6549207-6549226 None:intergenic 55.0%
TTCCTCTCACTCCAACCCCT+TGG - chr7_2:6549210-6549229 Msa1046160:CDS 55.0%
GATTCCACTGCTAGCTGGTG+AGG + chr7_2:6549535-6549554 None:intergenic 55.0%
TAAAAGGAAGGGGAGGGAGG+GGG + chr7_2:6549643-6549662 None:intergenic 55.0%
GACCAAGGGGTTGGAGTGAG+AGG + chr7_2:6549215-6549234 None:intergenic 60.0%
ACTGCTAGCTGGTGAGGAGG+AGG + chr7_2:6549529-6549548 None:intergenic 60.0%
TCCTCCTCACCAGCTAGCAG+TGG - chr7_2:6549528-6549547 Msa1046160:CDS 60.0%
TCCACTGCTAGCTGGTGAGG+AGG + chr7_2:6549532-6549551 None:intergenic 60.0%
GACCAAGGGGTTGGAGTGAG+AGG + chr7_2:6549215-6549234 None:intergenic 60.0%
ACTGCTAGCTGGTGAGGAGG+AGG + chr7_2:6549529-6549548 None:intergenic 60.0%
TCCTCCTCACCAGCTAGCAG+TGG - chr7_2:6549528-6549547 Msa1046160:CDS 60.0%
TCCACTGCTAGCTGGTGAGG+AGG + chr7_2:6549532-6549551 None:intergenic 60.0%
AAGGAAGGGGAGGGAGGGGG+TGG + chr7_2:6549640-6549659 None:intergenic 70.0%
AAGGAAGGGGAGGGAGGGGG+TGG + chr7_2:6549640-6549659 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 6548228 6549986 6548228 ID=Msa1046160;Name=Msa1046160
chr7_2 mRNA 6548228 6549986 6548228 ID=Msa1046160-mRNA-1;Parent=Msa1046160;Name=Msa1046160-mRNA-1;_AED=0.05;_eAED=0.05;_QI=393|1|1|1|1|1|3|351|248
chr7_2 exon 6548228 6548884 6548228 ID=Msa1046160-mRNA-1:exon:1508;Parent=Msa1046160-mRNA-1
chr7_2 exon 6548983 6549239 6548983 ID=Msa1046160-mRNA-1:exon:1507;Parent=Msa1046160-mRNA-1
chr7_2 exon 6549410 6549986 6549410 ID=Msa1046160-mRNA-1:exon:1506;Parent=Msa1046160-mRNA-1
chr7_2 five_prime_UTR 6549594 6549986 6549594 ID=Msa1046160-mRNA-1:five_prime_utr;Parent=Msa1046160-mRNA-1
chr7_2 CDS 6549410 6549593 6549410 ID=Msa1046160-mRNA-1:cds;Parent=Msa1046160-mRNA-1
chr7_2 CDS 6548983 6549239 6548983 ID=Msa1046160-mRNA-1:cds;Parent=Msa1046160-mRNA-1
chr7_2 CDS 6548579 6548884 6548579 ID=Msa1046160-mRNA-1:cds;Parent=Msa1046160-mRNA-1
chr7_2 three_prime_UTR 6548228 6548578 6548228 ID=Msa1046160-mRNA-1:three_prime_utr;Parent=Msa1046160-mRNA-1
Gene Sequence

>Msa1046160

ATGGAGAAGATGAATTTTGTGAAGAAGAATGGTGAAGTGAGATTGCCACCAGGTTTCCGTTTCCATCCAACTGATGAAGAACTTGTTGTTCAATACTTGAAGCGTAAGGTCTTCTCTTTCCCTTTACCTGCTTCCATCATTCCTGAAGTTGATCTTTGCAAGTCTGATCCTTGGGATTTACCTGGTGATATGGAACAAGAGAGGTACTTTTTCAGTACTAAAGAAGCCAAATACCCAAATGGGAACCGATCTAACAGAGCTACAAACTCTGGTTACTGGAAAGCAACTGGTTTAGACAAACAAATCATGAATTCAAAGAGTCATGAAGTTGTTGGTATGAAGAAAACTCTTGTTTTCTACAGAGGCAAACCACCTCATGGTTCAAGAACTGATTGGATCATGCATGAATATCGCCTCACTTCCTCTCACTCCAACCCCTTGAATGAAAATTGGGTTCTTTGTCGCATATTTCTGAAGAGGAGAGGTGGTGCTAAAAATGGAGAGGAGAGTGTGAAGCCAAGCAGTTGCAGCAACTTTGGTGAGGTGAAGAAGAACTCAGCTTCAAGCTCAAATTCAAGTTCAAAAGTGGTGGTTTTCTATGATTTCTTGGCACAGGAGAAGAACAATACTGATGCATCCTCCTCCTCACCAGCTAGCAGTGGAATCACAAATGAATTGGATGAACATGAAAATGAAGACAGCAGTAACTCACTTCCATCCTCATCCTCTTTTGGAAATAATGCTTAA
Protein sequence

>Msa1046160

MEKMNFVKKNGEVRLPPGFRFHPTDEELVVQYLKRKVFSFPLPASIIPEVDLCKSDPWDLPGDMEQERYFFSTKEAKYPNGNRSNRATNSGYWKATGLDKQIMNSKSHEVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLTSSHSNPLNENWVLCRIFLKRRGGAKNGEESVKPSSCSNFGEVKKNSASSSNSSSKVVVFYDFLAQEKNNTDASSSSPASSGITNELDEHENEDSSNSLPSSSSFGNNA*