AlfalfaGEDB | Msa1046160

M. sativa cultivar zhongmu-4 / Msa1046160

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1046160	QSD99826.1	87.903	248	19	3	1	238	1	247	5.75e-149	426

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1046160	sp\|Q9FY93\|NAC83_ARATH	56.627	249	91	6	1	235	1	246	5.44e-92	274

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1046160	A0A896WEL3	87.903	248	19	3	1	238	1	247	2.75e-149	426

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1046160	TF	NAC

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1046160	MtrunA17_Chr7g0214071	91.051	257	10	6	1	246	1	255	9.37e-153	425
Msa1046160	MtrunA17_Chr8g0385991	59.669	181	61	4	1	171	1	179	7.44e-73	221
Msa1046160	MtrunA17_Chr3g0131911	53.488	215	75	5	1	203	1	202	3.11e-69	213
Msa1046160	MtrunA17_Chr4g0047841	56.000	175	48	3	14	159	14	188	4.47e-60	193
Msa1046160	MtrunA17_Chr2g0318101	54.545	176	63	3	1	159	1	176	4.32e-59	191
Msa1046160	MtrunA17_Chr7g0252971	52.542	177	65	5	12	170	5	180	6.07e-59	190
Msa1046160	MtrunA17_Chr5g0417791	58.228	158	54	3	13	160	1	156	6.94e-59	187
Msa1046160	MtrunA17_Chr4g0042561	59.119	159	53	4	15	163	9	165	1.05e-58	187
Msa1046160	MtrunA17_Chr7g0263931	50.802	187	80	4	12	186	8	194	5.60e-57	184
Msa1046160	MtrunA17_Chr3g0124761	55.621	169	63	3	12	171	4	169	1.27e-55	179

Showing 1 to 10 of 91 entries

Previous1 2 3 4 5…10Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1046160	AT5G13180.1	56.627	249	91	6	1	235	1	246	5.53e-93	274
Msa1046160	AT2G33480.2	73.457	162	40	2	1	161	1	160	1.32e-86	258
Msa1046160	AT2G33480.1	72.561	164	40	2	1	161	1	162	1.95e-86	258
Msa1046160	AT1G61110.1	58.683	167	50	4	11	159	12	177	4.96e-59	190
Msa1046160	AT3G04070.2	55.882	170	59	4	6	159	1	170	1.47e-58	189
Msa1046160	AT1G69490.1	59.006	161	53	4	15	165	9	166	2.85e-58	186
Msa1046160	AT5G61430.1	55.357	168	65	5	6	165	7	172	6.09e-57	185
Msa1046160	AT1G77450.1	52.747	182	66	5	6	171	1	178	8.76e-57	182
Msa1046160	AT3G04070.1	51.613	186	58	4	6	159	1	186	3.21e-56	184
Msa1046160	AT5G39610.1	52.353	170	71	3	4	165	9	176	4.22e-56	181

Showing 1 to 10 of 154 entries

Previous1 2 3 4 5…16Next

Find 90 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAAGAAAGGAAAGGAA+AGG	0.541538	7_2:+6549804	None:intergenic
AAAGAAGCCAAATACCCAAA+TGG	0.451382	7_2:-6549182	Msa1046160:CDS
AAATGTCAAAGCCACTCGTG+TGG	0.666435	7_2:+6549628	None:intergenic
AAATTCAAGTTCAAAAGTGG+TGG	0.574345	7_2:-6548734	Msa1046160:CDS
AAGAAGCCAAATACCCAAAT+GGG	0.481949	7_2:-6549181	Msa1046160:CDS
AAGATCAACTTCAGGAATGA+TGG	0.468508	7_2:+6549438	None:intergenic
AATAAAAGGAAGGGGAGGGA+GGG	0.488281	7_2:+6548550	None:intergenic
AATAGAATAAAGAAAGGTGA+AGG	0.531185	7_2:+6549723	None:intergenic
ACAACAAGTTCTTCATCAGT+TGG	0.490523	7_2:+6549505	None:intergenic
ACAGAATCTCTTAAAAGGAG+GGG	0.595413	7_2:+6548345	None:intergenic

Showing 1 to 10 of 90 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAGAAAGGAAAGGAA+AGG	+	chr7_2:6548391-6548410	None:intergenic	30.0%
CCATTAAAAAGTTGTAGCAA+AGG	+	chr7_2:6548513-6548532	None:intergenic	30.0%
ATTATTTCCAAAAGAGGATG+AGG	+	chr7_2:6549610-6549629	None:intergenic	30.0%
TAATAATAAAAGGAAGGGGA+GGG	+	chr7_2:6549649-6549668	None:intergenic	30.0%
GACCTAATAATAAAAGGAAG+GGG	+	chr7_2:6549653-6549672	None:intergenic	30.0%
CAGACCTAATAATAAAAGGA+AGG	+	chr7_2:6549655-6549674	None:intergenic	30.0%
TACAGAATCTCTTAAAAGGA+GGG	+	chr7_2:6549851-6549870	None:intergenic	30.0%
TTACAGAATCTCTTAAAAGG+AGG	+	chr7_2:6549852-6549871	None:intergenic	30.0%
CACTTACAGAATCTCTTAAA+AGG	+	chr7_2:6549855-6549874	None:intergenic	30.0%
AAAGAAAGAAAGGAAAGGAA+AGG	+	chr7_2:6548391-6548410	None:intergenic	30.0%

Showing 1 to 10 of 254 entries

Previous1 2 3 4 5…26Next

Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	6548228	6549986	6548228	ID=Msa1046160;Name=Msa1046160
chr7_2	mRNA	6548228	6549986	6548228	ID=Msa1046160-mRNA-1;Parent=Msa1046160;Name=Msa1046160-mRNA-1;_AED=0.05;_eAED=0.05;_QI=393\|1\|1\|1\|1\|1\|3\|351\|248
chr7_2	exon	6548228	6548884	6548228	ID=Msa1046160-mRNA-1:exon:1508;Parent=Msa1046160-mRNA-1
chr7_2	exon	6548983	6549239	6548983	ID=Msa1046160-mRNA-1:exon:1507;Parent=Msa1046160-mRNA-1
chr7_2	exon	6549410	6549986	6549410	ID=Msa1046160-mRNA-1:exon:1506;Parent=Msa1046160-mRNA-1
chr7_2	five_prime_UTR	6549594	6549986	6549594	ID=Msa1046160-mRNA-1:five_prime_utr;Parent=Msa1046160-mRNA-1
chr7_2	CDS	6549410	6549593	6549410	ID=Msa1046160-mRNA-1:cds;Parent=Msa1046160-mRNA-1
chr7_2	CDS	6548983	6549239	6548983	ID=Msa1046160-mRNA-1:cds;Parent=Msa1046160-mRNA-1
chr7_2	CDS	6548579	6548884	6548579	ID=Msa1046160-mRNA-1:cds;Parent=Msa1046160-mRNA-1
chr7_2	three_prime_UTR	6548228	6548578	6548228	ID=Msa1046160-mRNA-1:three_prime_utr;Parent=Msa1046160-mRNA-1

Gene Sequence

>Msa1046160

ATGGAGAAGATGAATTTTGTGAAGAAGAATGGTGAAGTGAGATTGCCACCAGGTTTCCGTTTCCATCCAACTGATGAAGAACTTGTTGTTCAATACTTGAAGCGTAAGGTCTTCTCTTTCCCTTTACCTGCTTCCATCATTCCTGAAGTTGATCTTTGCAAGTCTGATCCTTGGGATTTACCTGGTGATATGGAACAAGAGAGGTACTTTTTCAGTACTAAAGAAGCCAAATACCCAAATGGGAACCGATCTAACAGAGCTACAAACTCTGGTTACTGGAAAGCAACTGGTTTAGACAAACAAATCATGAATTCAAAGAGTCATGAAGTTGTTGGTATGAAGAAAACTCTTGTTTTCTACAGAGGCAAACCACCTCATGGTTCAAGAACTGATTGGATCATGCATGAATATCGCCTCACTTCCTCTCACTCCAACCCCTTGAATGAAAATTGGGTTCTTTGTCGCATATTTCTGAAGAGGAGAGGTGGTGCTAAAAATGGAGAGGAGAGTGTGAAGCCAAGCAGTTGCAGCAACTTTGGTGAGGTGAAGAAGAACTCAGCTTCAAGCTCAAATTCAAGTTCAAAAGTGGTGGTTTTCTATGATTTCTTGGCACAGGAGAAGAACAATACTGATGCATCCTCCTCCTCACCAGCTAGCAGTGGAATCACAAATGAATTGGATGAACATGAAAATGAAGACAGCAGTAACTCACTTCCATCCTCATCCTCTTTTGGAAATAATGCTTAA

Protein sequence

>Msa1046160

MEKMNFVKKNGEVRLPPGFRFHPTDEELVVQYLKRKVFSFPLPASIIPEVDLCKSDPWDLPGDMEQERYFFSTKEAKYPNGNRSNRATNSGYWKATGLDKQIMNSKSHEVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLTSSHSNPLNENWVLCRIFLKRRGGAKNGEESVKPSSCSNFGEVKKNSASSSNSSSKVVVFYDFLAQEKNNTDASSSSPASSGITNELDEHENEDSSNSLPSSSSFGNNA*