AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1046530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1046530 MtrunA17_Chr7g0214501 86.932 352 4 1 86 437 1 310 0.0 615
Msa1046530 MtrunA17_Chr1g0213311 61.440 389 131 8 1 377 1 382 1.51e-165 472
Msa1046530 MtrunA17_Chr7g0214491 97.647 85 2 0 1 85 1 85 5.20e-57 183
Msa1046530 MtrunA17_Chr3g0079841 39.073 302 121 6 22 323 26 264 2.65e-56 187
Msa1046530 MtrunA17_Chr3g0143581 51.852 135 61 3 25 156 20 153 2.17e-40 142
Msa1046530 MtrunA17_Chr3g0143571 45.098 153 78 2 190 337 23 174 5.62e-37 133
Msa1046530 MtrunA17_Chr5g0435401 24.055 291 158 7 67 353 70 301 6.96e-14 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1046530 AT1G04880.1 54.813 374 140 6 1 356 1 363 2.44e-119 355
Msa1046530 AT1G76110.1 42.812 313 156 3 25 327 27 326 8.40e-82 256
Msa1046530 AT3G13350.1 47.157 299 126 8 30 323 34 305 7.24e-79 247
Msa1046530 AT1G55650.1 39.867 301 140 6 32 331 30 290 3.79e-64 210

Find 92 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAATTCTCAGTTACTATT+TGG 0.154165 7_2:+7027169 Msa1046530:five_prime_UTR
TGTTCTGCAGTGTCTTCTTC+TGG 0.231989 7_2:+7030091 Msa1046530:intron
GGAGAAGCTTCATGCTTCTA+TGG 0.249345 7_2:+7027703 Msa1046530:CDS
GCCACTGCAACAACGGTTTC+TGG 0.256389 7_2:+7031173 Msa1046530:CDS
GGAAGAAGTCAGAAATAAAA+AGG 0.265856 7_2:+7030287 Msa1046530:CDS
TTATCAAGAAAAGGCTATTA+AGG 0.267196 7_2:+7031074 Msa1046530:CDS
TAACCACTTCTGTTAGGTTT+TGG 0.270511 7_2:-7030325 None:intergenic
TGTTTCAGGGTTCCCATTAT+TGG 0.277531 7_2:+7027933 Msa1046530:intron
CGGTGGACCCCTGCATCTTC+TGG 0.281007 7_2:+7029128 Msa1046530:CDS
TCTTCTGGATCTTCACTTGT+TGG 0.289352 7_2:+7030106 Msa1046530:CDS
ATAGGAGCTACCACTTTCAT+AGG 0.334690 7_2:-7027605 None:intergenic
TCACTTGTTGGAGTTATTGA+TGG 0.342127 7_2:+7030118 Msa1046530:CDS
TAATATCCTTGTCCATGGTT+TGG 0.351606 7_2:-7030393 None:intergenic
AAGTCGACTGGATGTGTTCC+TGG 0.356132 7_2:-7029307 None:intergenic
TCCTCCTCCGACGGCGGCGT+TGG 0.371177 7_2:-7030267 None:intergenic
ACTCCTGAGGAGAGTAGTTC+TGG 0.384663 7_2:+7031249 Msa1046530:CDS
ATCAACATGGATGCTTCTTC+CGG 0.386689 7_2:+7031297 Msa1046530:CDS
CAATATTGCATCTGCTGCAT+TGG 0.389249 7_2:+7030240 Msa1046530:CDS
GTAGAATGATTGGTGAACTT+TGG 0.397195 7_2:+7030416 Msa1046530:CDS
AGATGCAGGGGTCCACCGTT+TGG 0.409841 7_2:-7029123 None:intergenic
AAAGTAAGGATAACATGTTT+TGG 0.411072 7_2:-7031455 None:intergenic
AAATTGTAACCACTTCTGTT+AGG 0.413038 7_2:-7030331 None:intergenic
GAAGCATTGGTTGCTGTTGA+TGG 0.418040 7_2:-7029035 None:intergenic
AGAAAGGTACCAAGCAGAAA+TGG 0.423266 7_2:+7031101 Msa1046530:CDS
GGAAGGAGATTCAGCTTTGG+TGG 0.436527 7_2:+7031194 Msa1046530:CDS
CAAGCTCTTTATGCTTACAT+TGG 0.448632 7_2:+7027682 Msa1046530:CDS
AAGGATATTAGTAGAATGAT+TGG 0.451525 7_2:+7030406 Msa1046530:CDS
CCAGTCGACTTTCAGAAGTC+AGG 0.453438 7_2:+7029319 Msa1046530:CDS
TCTGGAAGGAGATTCAGCTT+TGG 0.456761 7_2:+7031191 Msa1046530:CDS
CATTAAGGTTTATCAAGAAA+AGG 0.456846 7_2:+7031065 Msa1046530:intron
CAATGTAAGCATAAAGAGCT+TGG 0.458599 7_2:-7027681 None:intergenic
ATTGATGGAAAGTTTGAAAG+TGG 0.459678 7_2:+7030133 Msa1046530:CDS
ACGCGGGGCCACTGCAACAA+CGG 0.461362 7_2:+7031166 Msa1046530:CDS
AGAATCCACTCTTGCTCCAC+CGG 0.466317 7_2:-7031316 None:intergenic
AATATTGCATCTGCTGCATT+GGG 0.466960 7_2:+7030241 Msa1046530:CDS
TGATTCAGACAAGGCAACTA+AGG 0.470199 7_2:+7031350 Msa1046530:CDS
TCCAACGCCGCCGTCGGAGG+AGG 0.470219 7_2:+7030266 Msa1046530:CDS
AGCTTATGAAAGAGAGAAGA+TGG 0.479121 7_2:+7028985 Msa1046530:intron
TATCTAGTTTCAGTTTCAGT+AGG 0.493509 7_2:+7030157 Msa1046530:CDS
TTGCAGTGGCCCCGCGTAGT+CGG 0.498245 7_2:-7031160 None:intergenic
AATGTAAGCATAAAGAGCTT+GGG 0.499008 7_2:-7027680 None:intergenic
TCTGAGCACAAAGGAAGCAT+TGG 0.506402 7_2:-7029048 None:intergenic
TCCAGAAACCGTTGTTGCAG+TGG 0.511982 7_2:-7031174 None:intergenic
ACTGGATGTGTTCCTGGAGA+AGG 0.512094 7_2:-7029301 None:intergenic
TTCAGGGTTCCCATTATTGG+AGG 0.517053 7_2:+7027936 Msa1046530:intron
GAGAAGCTTCATGCTTCTAT+GGG 0.518689 7_2:+7027704 Msa1046530:CDS
TGGGCGTCCAACGCCGCCGT+CGG 0.523765 7_2:+7030260 Msa1046530:CDS
TTCATTGAAGTGACTTCTCG+TGG 0.526953 7_2:+7027984 Msa1046530:CDS
ATGCACAAACCAGAAGATGC+AGG 0.528390 7_2:-7029137 None:intergenic
CAATGATTTCCCTATGAAAG+TGG 0.531885 7_2:+7027595 Msa1046530:CDS
AAATTCTCTACACTAAAGTA+AGG 0.535953 7_2:-7031469 None:intergenic
GATAATCCTCCATTTCTGCT+TGG 0.539679 7_2:-7031110 None:intergenic
TCTACTAATATCCTTGTCCA+TGG 0.543804 7_2:-7030398 None:intergenic
CAGTCGACTTTCAGAAGTCA+GGG 0.544869 7_2:+7029320 Msa1046530:CDS
TCACCAGAACTACTCTCCTC+AGG 0.547824 7_2:-7031252 None:intergenic
CCTGACTTCTGAAAGTCGAC+TGG 0.548629 7_2:-7029319 None:intergenic
TGCACAAACCAGAAGATGCA+GGG 0.551653 7_2:-7029136 None:intergenic
GCGTCCAACGCCGCCGTCGG+AGG 0.562184 7_2:+7030263 Msa1046530:CDS
TTGAAGTGACTTCTCGTGGA+GGG 0.562395 7_2:+7027988 Msa1046530:CDS
GAAGTTCTTAGCCATTGTGA+GGG 0.564422 7_2:+7031384 Msa1046530:CDS
TCAGGATATGAATGAGACAT+AGG 0.570116 7_2:-7027623 None:intergenic
AGGCTATTAAGGATAAAGAA+AGG 0.573816 7_2:+7031085 Msa1046530:CDS
TTCTTCCGGTGGAGCAAGAG+TGG 0.579438 7_2:+7031311 Msa1046530:CDS
TGAAGTTCTTAGCCATTGTG+AGG 0.580768 7_2:+7031383 Msa1046530:CDS
CTGACTTCTTCCTCCTCCGA+CGG 0.584477 7_2:-7030276 None:intergenic
TATTGAAGCTGGAACAGACA+TGG 0.585157 7_2:-7029263 None:intergenic
AACATGGATGCTTCTTCCGG+TGG 0.585693 7_2:+7031300 Msa1046530:CDS
AAATTTGTTTGAAAGGTAGG+AGG 0.593616 7_2:+7027534 Msa1046530:intron
TCAGACAAGGCAACTAAGGA+GGG 0.601091 7_2:+7031354 Msa1046530:CDS
CATCCAAAACCTAACAGAAG+TGG 0.603836 7_2:+7030322 Msa1046530:CDS
TGCAAAATATGATGATGTTG+TGG 0.605066 7_2:+7027652 Msa1046530:CDS
ACTTCTTCCTCCTCCGACGG+CGG 0.605098 7_2:-7030273 None:intergenic
TTCAGACAAGGCAACTAAGG+AGG 0.611052 7_2:+7031353 Msa1046530:CDS
AGCATTGTAACCGACTACGC+GGG 0.614088 7_2:+7031150 Msa1046530:CDS
AAAGCTACTAAACCAAACCA+TGG 0.615278 7_2:+7030381 Msa1046530:CDS
AATGCTTCTGAATTGCCTCA+AGG 0.618648 7_2:+7029346 Msa1046530:CDS
CTGCAACAACGGTTTCTGGA+AGG 0.622323 7_2:+7031177 Msa1046530:CDS
TAGGAGCTACCACTTTCATA+GGG 0.623246 7_2:-7027604 None:intergenic
AAGGTACCAAGCAGAAATGG+AGG 0.630994 7_2:+7031104 Msa1046530:CDS
TGTGAGGGAGAAGTGAATGC+TGG 0.631243 7_2:+7031399 Msa1046530:CDS
CGATTCTTGTCAGACTCCTG+AGG 0.642082 7_2:+7031236 Msa1046530:CDS
CATTCACTTCTCCCTCACAA+TGG 0.653715 7_2:-7031395 None:intergenic
TTCTCGTGGAGGGATTGAGA+AGG 0.661472 7_2:+7027998 Msa1046530:CDS
GCACAAACCAGAAGATGCAG+GGG 0.670000 7_2:-7029135 None:intergenic
ACTAAACCAAACCATGGACA+AGG 0.670033 7_2:+7030387 Msa1046530:CDS
GTAGGTTCAGAGACACTCAA+AGG 0.670192 7_2:+7030175 Msa1046530:CDS
GCATTGTAACCGACTACGCG+GGG 0.675516 7_2:+7031151 Msa1046530:CDS
ATTGAAGTGACTTCTCGTGG+AGG 0.683803 7_2:+7027987 Msa1046530:CDS
GAGCATTGTAACCGACTACG+CGG 0.688230 7_2:+7031149 Msa1046530:CDS
AGTCGACTTTCAGAAGTCAG+GGG 0.692181 7_2:+7029321 Msa1046530:CDS
TGTTGCAGATGATATCAACA+TGG 0.720650 7_2:+7031284 Msa1046530:CDS
GAGGGAGAAGTGAATGCTGG+CGG 0.753755 7_2:+7031402 Msa1046530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTATTCATATTCATTT+AGG + chr7_2:7027217-7027236 Msa1046530:intron 10.0%
!! AAATATTAAAAACATCAAAT+AGG - chr7_2:7028440-7028459 None:intergenic 10.0%
!!! AGTATTACATATATAATTTT+TGG + chr7_2:7028921-7028940 Msa1046530:intron 10.0%
!! ATAAAAAACATATACAAGAA+CGG - chr7_2:7027307-7027326 None:intergenic 15.0%
!! TATCATCAATAATTAATCAT+TGG + chr7_2:7027324-7027343 Msa1046530:intron 15.0%
!! TTCACAAAAATTATTTAGAA+AGG - chr7_2:7028048-7028067 None:intergenic 15.0%
!!! AAAATGAACATGTTTTTATT+AGG - chr7_2:7028392-7028411 None:intergenic 15.0%
!!! GATGTTTTTAATATTTAATC+AGG + chr7_2:7028444-7028463 Msa1046530:intron 15.0%
!!! ATTTTTTCTTCTTTTCTTTT+TGG - chr7_2:7029406-7029425 None:intergenic 15.0%
!! GAAAAGAAGAAAAAATAATT+TGG + chr7_2:7029410-7029429 Msa1046530:intron 15.0%
!!! TTGTAATTTTGATAAATTCA+TGG - chr7_2:7029689-7029708 None:intergenic 15.0%
!!! TTTGTAATTTTCAATACATT+TGG + chr7_2:7029849-7029868 Msa1046530:intron 15.0%
!!! AATAGCTTTATTTATTTTAC+AGG - chr7_2:7030013-7030032 None:intergenic 15.0%
!!! TTATTAATTTTAATGCTTTG+TGG - chr7_2:7030217-7030236 None:intergenic 15.0%
!! CAATTTCCTTAAATTATTAT+TGG + chr7_2:7030939-7030958 Msa1046530:intron 15.0%
!! TACATACCAATAATAATTTA+AGG - chr7_2:7030948-7030967 None:intergenic 15.0%
!!! CATATACCTATATTGTTTTT+TGG + chr7_2:7027498-7027517 Msa1046530:intron 20.0%
!! TAGAAACCAAAAAACAATAT+AGG - chr7_2:7027507-7027526 None:intergenic 20.0%
!!! AAACATCAAATTTGTTTGAA+AGG + chr7_2:7027527-7027546 Msa1046530:intron 20.0%
!!! TATAACTGAAATTTTGTTTC+AGG + chr7_2:7027919-7027938 Msa1046530:intron 20.0%
!!! ATAACTGAAATTTTGTTTCA+GGG + chr7_2:7027920-7027939 Msa1046530:intron 20.0%
!! AATAAATATGTTCATGAATG+AGG + chr7_2:7028165-7028184 Msa1046530:intron 20.0%
!!! AACATGTTCATTTTATTTCA+AGG + chr7_2:7028398-7028417 Msa1046530:intron 20.0%
!!! TATTTTACAAAATTCGATGT+TGG + chr7_2:7028623-7028642 Msa1046530:intron 20.0%
!! ATAATATTAAGTACCTTTGT+CGG + chr7_2:7028761-7028780 Msa1046530:intron 20.0%
!! TCATCTATGAAAAAAAGTTT+AGG - chr7_2:7028852-7028871 None:intergenic 20.0%
!!! TTTTAATGTTCAATATGACT+AGG - chr7_2:7029546-7029565 None:intergenic 20.0%
!! TGACTAACAAAATATACATT+TGG - chr7_2:7029721-7029740 None:intergenic 20.0%
!! TCAATCTGGTTAAATATATT+TGG + chr7_2:7029941-7029960 Msa1046530:intron 20.0%
!! AAATGAGATTGAAAAACTAA+AGG - chr7_2:7029990-7030009 None:intergenic 20.0%
!!! TAACAATTCAAATTGGTTTT+TGG + chr7_2:7030685-7030704 Msa1046530:intron 20.0%
!!! TTGGTTATTTTTTAACGATT+TGG + chr7_2:7030704-7030723 Msa1046530:intron 20.0%
!! CTCTCTGTATTTTCTTAATA+AGG - chr7_2:7027085-7027104 None:intergenic 25.0%
!! ATCAAATTTGTTTGAAAGGT+AGG + chr7_2:7027531-7027550 Msa1046530:intron 25.0%
! CATATTTATTTGCTCAAACT+TGG - chr7_2:7028155-7028174 None:intergenic 25.0%
! AATCACAAGCATTAAAATAG+TGG - chr7_2:7028345-7028364 None:intergenic 25.0%
! GGAAAATTTCTTATACTAGT+TGG - chr7_2:7028371-7028390 None:intergenic 25.0%
!!! TTCATTTTATTTCAAGGACA+TGG + chr7_2:7028404-7028423 Msa1046530:intron 25.0%
! GATCTATGTACAAATCTATA+GGG - chr7_2:7028897-7028916 None:intergenic 25.0%
! AGATCTATGTACAAATCTAT+AGG - chr7_2:7028898-7028917 None:intergenic 25.0%
! CACAAATTGCTATAAAGATA+AGG - chr7_2:7028961-7028980 None:intergenic 25.0%
!!! TCTACTATTTTAGATCCAAA+CGG + chr7_2:7029108-7029127 Msa1046530:CDS 25.0%
!! GTATATTTTGTTAGTCACTT+TGG + chr7_2:7029724-7029743 Msa1046530:intron 25.0%
! GATTGATTAAGTAACTTTGT+TGG - chr7_2:7029927-7029946 None:intergenic 25.0%
! ACAAAGTTACTTAATCAATC+TGG + chr7_2:7029927-7029946 Msa1046530:intron 25.0%
! TGATTTATATATGCATGACT+TGG - chr7_2:7030039-7030058 None:intergenic 25.0%
! TAGTTAACAATAACAAGTAG+TGG + chr7_2:7030064-7030083 Msa1046530:intron 25.0%
! AAGGATATTAGTAGAATGAT+TGG + chr7_2:7030406-7030425 Msa1046530:CDS 25.0%
!! TTTGATTTAACAGTTTGCTT+TGG - chr7_2:7030582-7030601 None:intergenic 25.0%
! TTCGGTTTAACAATTCAAAT+TGG + chr7_2:7030678-7030697 Msa1046530:intron 25.0%
!! ATACAAGTTCGATTTTGAAT+CGG + chr7_2:7030787-7030806 Msa1046530:intron 25.0%
! AGCATATTAATAACATGACT+AGG - chr7_2:7031033-7031052 None:intergenic 25.0%
! CATTAAGGTTTATCAAGAAA+AGG + chr7_2:7031065-7031084 Msa1046530:intron 25.0%
! TTATCAAGAAAAGGCTATTA+AGG + chr7_2:7031074-7031093 Msa1046530:CDS 25.0%
!! AAAGTAAGGATAACATGTTT+TGG - chr7_2:7031458-7031477 None:intergenic 25.0%
CTCAATTCTCAGTTACTATT+TGG + chr7_2:7027169-7027188 Msa1046530:five_prime_UTR 30.0%
ATACAAGAACGGAACAAATT+TGG - chr7_2:7027296-7027315 None:intergenic 30.0%
! AAATTTGTTTGAAAGGTAGG+AGG + chr7_2:7027534-7027553 Msa1046530:intron 30.0%
! ACATCATCATATTTTGCAAG+AGG - chr7_2:7027650-7027669 None:intergenic 30.0%
! TGCAAAATATGATGATGTTG+TGG + chr7_2:7027652-7027671 Msa1046530:CDS 30.0%
AATGTAAGCATAAAGAGCTT+GGG - chr7_2:7027683-7027702 None:intergenic 30.0%
ACACTAACATATTGTTGTCA+TGG + chr7_2:7027877-7027896 Msa1046530:intron 30.0%
ACATATTGTTGTCATGGATT+TGG + chr7_2:7027883-7027902 Msa1046530:intron 30.0%
! AGTTCTTTTCCTCCAATAAT+GGG - chr7_2:7027948-7027967 None:intergenic 30.0%
! TAGTTCTTTTCCTCCAATAA+TGG - chr7_2:7027949-7027968 None:intergenic 30.0%
AATGTCCAAGTTAAAGCTTT+CGG - chr7_2:7028199-7028218 None:intergenic 30.0%
ACTAAATACACTCAACAGAT+TGG + chr7_2:7028262-7028281 Msa1046530:intron 30.0%
TCACGACTCAATTCAATTTA+TGG - chr7_2:7028480-7028499 None:intergenic 30.0%
TCGTGAACAAAACTTTGTAT+GGG + chr7_2:7028494-7028513 Msa1046530:intron 30.0%
TTATATCAGTCAACGAAGAT+TGG + chr7_2:7028655-7028674 Msa1046530:intron 30.0%
! ATAGTATTTTCTGAGCACAA+AGG - chr7_2:7029060-7029079 None:intergenic 30.0%
AAAAATTGCGTTATTGAAGC+TGG - chr7_2:7029277-7029296 None:intergenic 30.0%
TATATGAGCTTAAGAACCTT+AGG + chr7_2:7029447-7029466 Msa1046530:intron 30.0%
AATATGACTAGGTGTATGTT+TGG - chr7_2:7029535-7029554 None:intergenic 30.0%
TAAAAGTAGACATAGAAGTG+CGG + chr7_2:7029561-7029580 Msa1046530:intron 30.0%
GTAACTGTCTACTTAATCTT+TGG - chr7_2:7029629-7029648 None:intergenic 30.0%
ACAAAATATACATTTGGCGA+TGG - chr7_2:7029715-7029734 None:intergenic 30.0%
AGTAGTTTCCTAAATCAAAG+CGG - chr7_2:7029805-7029824 None:intergenic 30.0%
ATTGATGGAAAGTTTGAAAG+TGG + chr7_2:7030133-7030152 Msa1046530:CDS 30.0%
! TATCTAGTTTCAGTTTCAGT+AGG + chr7_2:7030157-7030176 Msa1046530:CDS 30.0%
GGAAGAAGTCAGAAATAAAA+AGG + chr7_2:7030287-7030306 Msa1046530:CDS 30.0%
AAATTGTAACCACTTCTGTT+AGG - chr7_2:7030334-7030353 None:intergenic 30.0%
! TAACAGTTTGCTTTGGTATT+TGG - chr7_2:7030575-7030594 None:intergenic 30.0%
! TAAACCAAACTGGTTTAGTT+CGG - chr7_2:7030631-7030650 None:intergenic 30.0%
!!! TAACGATTTGGTTAGTTTTC+TGG + chr7_2:7030716-7030735 Msa1046530:intron 30.0%
TGTATAAATGTTTGACACAC+CGG - chr7_2:7030772-7030791 None:intergenic 30.0%
! TACAAGTTCGATTTTGAATC+GGG + chr7_2:7030788-7030807 Msa1046530:intron 30.0%
! GTATTGCCAAATTGTTGTTA+CGG + chr7_2:7030840-7030859 Msa1046530:intron 30.0%
TTAGACACTATGACTATTCA+AGG - chr7_2:7030883-7030902 None:intergenic 30.0%
TAACACAACACTAATACATG+TGG + chr7_2:7030900-7030919 Msa1046530:intron 30.0%
AGGCTATTAAGGATAAAGAA+AGG + chr7_2:7031085-7031104 Msa1046530:CDS 30.0%
AAGCAGCAATGTCAAAGAAA+CGG - chr7_2:7027261-7027280 None:intergenic 35.0%
!!! AGGTAGGAGGTTTTAATTGA+TGG + chr7_2:7027547-7027566 Msa1046530:intron 35.0%
CAATGATTTCCCTATGAAAG+TGG + chr7_2:7027595-7027614 Msa1046530:CDS 35.0%
TCAGGATATGAATGAGACAT+AGG - chr7_2:7027626-7027645 None:intergenic 35.0%
! TCATATTTTGCAAGAGGTTC+AGG - chr7_2:7027644-7027663 None:intergenic 35.0%
CAATGTAAGCATAAAGAGCT+TGG - chr7_2:7027684-7027703 None:intergenic 35.0%
CAAGCTCTTTATGCTTACAT+TGG + chr7_2:7027682-7027701 Msa1046530:CDS 35.0%
CTTCAATTGTAAGCCATGTA+TGG + chr7_2:7027813-7027832 Msa1046530:intron 35.0%
ACAATATGTTAGTGTCGTGT+CGG - chr7_2:7027872-7027891 None:intergenic 35.0%
TCAAACTTGGACACAATCTA+TGG - chr7_2:7028142-7028161 None:intergenic 35.0%
GTCGTGAACAAAACTTTGTA+TGG + chr7_2:7028493-7028512 Msa1046530:intron 35.0%
GACTCAATTCCTTACTAGTT+GGG - chr7_2:7028681-7028700 None:intergenic 35.0%
TGACTCAATTCCTTACTAGT+TGG - chr7_2:7028682-7028701 None:intergenic 35.0%
AGCTTATGAAAGAGAGAAGA+TGG + chr7_2:7028985-7029004 Msa1046530:intron 35.0%
!! ACTATTTTAGATCCAAACGG+TGG + chr7_2:7029111-7029130 Msa1046530:CDS 35.0%
ACTGTCTACTTAATCTTTGG+TGG - chr7_2:7029626-7029645 None:intergenic 35.0%
! TCTATTAGCCGCTTTGATTT+AGG + chr7_2:7029794-7029813 Msa1046530:intron 35.0%
! ACTTTGGTTCCTAAATGTGT+GGG - chr7_2:7029893-7029912 None:intergenic 35.0%
! TCACTTGTTGGAGTTATTGA+TGG + chr7_2:7030118-7030137 Msa1046530:CDS 35.0%
AATATTGCATCTGCTGCATT+GGG + chr7_2:7030241-7030260 Msa1046530:CDS 35.0%
! TAACCACTTCTGTTAGGTTT+TGG - chr7_2:7030328-7030347 None:intergenic 35.0%
AAAGCTACTAAACCAAACCA+TGG + chr7_2:7030381-7030400 Msa1046530:CDS 35.0%
TAATATCCTTGTCCATGGTT+TGG - chr7_2:7030396-7030415 None:intergenic 35.0%
TCTACTAATATCCTTGTCCA+TGG - chr7_2:7030401-7030420 None:intergenic 35.0%
GTAGAATGATTGGTGAACTT+TGG + chr7_2:7030416-7030435 Msa1046530:CDS 35.0%
ATATCGAAGACATGTTCGAT+AGG + chr7_2:7030535-7030554 Msa1046530:intron 35.0%
GTTCACAAACTAAACCAAAC+TGG - chr7_2:7030641-7030660 None:intergenic 35.0%
AAATTGAACCAAACCGTCAT+TGG - chr7_2:7030819-7030838 None:intergenic 35.0%
CACTATGACTATTCAAGGTT+CGG - chr7_2:7030878-7030897 None:intergenic 35.0%
GATTGTTTGTAGAACCTATG+AGG - chr7_2:7030994-7031013 None:intergenic 35.0%
CAAACAATCATGCCATACTT+CGG + chr7_2:7031005-7031024 Msa1046530:intron 35.0%
TGTTGCAGATGATATCAACA+TGG + chr7_2:7031284-7031303 Msa1046530:CDS 35.0%
!!! AGCTTTTGTTGATTCAGACA+AGG + chr7_2:7031341-7031360 Msa1046530:CDS 35.0%
TAGGAGCTACCACTTTCATA+GGG - chr7_2:7027607-7027626 None:intergenic 40.0%
ATAGGAGCTACCACTTTCAT+AGG - chr7_2:7027608-7027627 None:intergenic 40.0%
GAGAAGCTTCATGCTTCTAT+GGG + chr7_2:7027704-7027723 Msa1046530:CDS 40.0%
TGTTTCAGGGTTCCCATTAT+TGG + chr7_2:7027933-7027952 Msa1046530:intron 40.0%
TTCATTGAAGTGACTTCTCG+TGG + chr7_2:7027984-7028003 Msa1046530:CDS 40.0%
TGTTAGCGTAAAGACATCGT+TGG + chr7_2:7028735-7028754 Msa1046530:intron 40.0%
CAGTATTTCACTGAGCATCA+AGG + chr7_2:7028788-7028807 Msa1046530:intron 40.0%
TGAATCCTAGAGACTCATCA+GGG - chr7_2:7028824-7028843 None:intergenic 40.0%
TATTGAAGCTGGAACAGACA+TGG - chr7_2:7029266-7029285 None:intergenic 40.0%
AATGCTTCTGAATTGCCTCA+AGG + chr7_2:7029346-7029365 Msa1046530:CDS 40.0%
AGCTTAAGAACCTTAGGCTT+CGG + chr7_2:7029453-7029472 Msa1046530:intron 40.0%
AGGTGTATGTTTGGATTGAC+AGG - chr7_2:7029526-7029545 None:intergenic 40.0%
! GACTTTGGTTCCTAAATGTG+TGG - chr7_2:7029894-7029913 None:intergenic 40.0%
TCTTCTGGATCTTCACTTGT+TGG + chr7_2:7030106-7030125 Msa1046530:CDS 40.0%
CAATATTGCATCTGCTGCAT+TGG + chr7_2:7030240-7030259 Msa1046530:CDS 40.0%
CATCCAAAACCTAACAGAAG+TGG + chr7_2:7030322-7030341 Msa1046530:CDS 40.0%
ACTAAACCAAACCATGGACA+AGG + chr7_2:7030387-7030406 Msa1046530:CDS 40.0%
TAAACCGAACCAAACTGTGA+TGG - chr7_2:7030667-7030686 None:intergenic 40.0%
CAGTCCTAATTATCAACAGC+CGG + chr7_2:7030750-7030769 Msa1046530:intron 40.0%
GCTGAACCGTAACAACAATT+TGG - chr7_2:7030849-7030868 None:intergenic 40.0%
TTGGTATGTAGTATTGTGCC+AGG + chr7_2:7030958-7030977 Msa1046530:intron 40.0%
GCTGAGTTTCTCTGACATTA+AGG + chr7_2:7031050-7031069 Msa1046530:intron 40.0%
!! AGAAAGGTACCAAGCAGAAA+TGG + chr7_2:7031101-7031120 Msa1046530:CDS 40.0%
GATAATCCTCCATTTCTGCT+TGG - chr7_2:7031113-7031132 None:intergenic 40.0%
ATCAACATGGATGCTTCTTC+CGG + chr7_2:7031297-7031316 Msa1046530:CDS 40.0%
TGATTCAGACAAGGCAACTA+AGG + chr7_2:7031350-7031369 Msa1046530:CDS 40.0%
TGAAGTTCTTAGCCATTGTG+AGG + chr7_2:7031383-7031402 Msa1046530:CDS 40.0%
GAAGTTCTTAGCCATTGTGA+GGG + chr7_2:7031384-7031403 Msa1046530:CDS 40.0%
GGAGAAGCTTCATGCTTCTA+TGG + chr7_2:7027703-7027722 Msa1046530:CDS 45.0%
CACGTATCGAACACCATACA+TGG - chr7_2:7027829-7027848 None:intergenic 45.0%
TTCAGGGTTCCCATTATTGG+AGG + chr7_2:7027936-7027955 Msa1046530:intron 45.0%
ATTGAAGTGACTTCTCGTGG+AGG + chr7_2:7027987-7028006 Msa1046530:CDS 45.0%
TTGAAGTGACTTCTCGTGGA+GGG + chr7_2:7027988-7028007 Msa1046530:CDS 45.0%
! TCCAGCCGAAAGCTTTAACT+TGG + chr7_2:7028191-7028210 Msa1046530:intron 45.0%
TCCAAGTTAAAGCTTTCGGC+TGG - chr7_2:7028195-7028214 None:intergenic 45.0%
! GAAGATTGGCCCAACTAGTA+AGG + chr7_2:7028669-7028688 Msa1046530:intron 45.0%
TTGAGTCATATGCCCTGCAA+AGG + chr7_2:7028694-7028713 Msa1046530:intron 45.0%
GAAATACTGAACGCCGACAA+AGG - chr7_2:7028777-7028796 None:intergenic 45.0%
CTAGAGACTCATCAGGGTTA+GGG - chr7_2:7028818-7028837 None:intergenic 45.0%
CTGAATCCTAGAGACTCATC+AGG - chr7_2:7028825-7028844 None:intergenic 45.0%
!! GAAGCATTGGTTGCTGTTGA+TGG - chr7_2:7029038-7029057 None:intergenic 45.0%
! TCTGAGCACAAAGGAAGCAT+TGG - chr7_2:7029051-7029070 None:intergenic 45.0%
TGCACAAACCAGAAGATGCA+GGG - chr7_2:7029139-7029158 None:intergenic 45.0%
ATGCACAAACCAGAAGATGC+AGG - chr7_2:7029140-7029159 None:intergenic 45.0%
! CAATTTTTGCAGCCTTCTCC+AGG + chr7_2:7029289-7029308 Msa1046530:CDS 45.0%
! CAGTCGACTTTCAGAAGTCA+GGG + chr7_2:7029320-7029339 Msa1046530:CDS 45.0%
! AGTCGACTTTCAGAAGTCAG+GGG + chr7_2:7029321-7029340 Msa1046530:CDS 45.0%
GAGCTTAAGAAGTGACCTTG+AGG - chr7_2:7029364-7029383 None:intergenic 45.0%
CATGATTTAGCCGAAGCCTA+AGG - chr7_2:7029466-7029485 None:intergenic 45.0%
CTTAGGCTTCGGCTAAATCA+TGG + chr7_2:7029464-7029483 Msa1046530:intron 45.0%
! GCATCATGACTTTGTTGTGG+TGG + chr7_2:7029489-7029508 Msa1046530:intron 45.0%
ATCCTTGAATGTGCCAAGTG+TGG + chr7_2:7029653-7029672 Msa1046530:intron 45.0%
TGGACAATAGAGACCACACT+TGG - chr7_2:7029669-7029688 None:intergenic 45.0%
TGAAACCGACCCACACATTT+AGG + chr7_2:7029881-7029900 Msa1046530:intron 45.0%
TGGTTCCTAAATGTGTGGGT+CGG - chr7_2:7029889-7029908 None:intergenic 45.0%
GTTGGAGTAAGCAGTGACTT+TGG - chr7_2:7029909-7029928 None:intergenic 45.0%
TGTTCTGCAGTGTCTTCTTC+TGG + chr7_2:7030091-7030110 Msa1046530:intron 45.0%
GTAGGTTCAGAGACACTCAA+AGG + chr7_2:7030175-7030194 Msa1046530:CDS 45.0%
!!! CTGTTAGGTTTTGGATGTGC+AGG - chr7_2:7030319-7030338 None:intergenic 45.0%
CGAACCGAACTAAACCAGTT+TGG + chr7_2:7030624-7030643 Msa1046530:intron 45.0%
GTGAACTGTCCATCACAGTT+TGG + chr7_2:7030655-7030674 Msa1046530:intron 45.0%
CTGTCCATCACAGTTTGGTT+CGG + chr7_2:7030660-7030679 Msa1046530:intron 45.0%
!! CACACCGGCTGTTGATAATT+AGG - chr7_2:7030757-7030776 None:intergenic 45.0%
! GAACCAAACCGTCATTGGTT+TGG - chr7_2:7030814-7030833 None:intergenic 45.0%
! TTGTTGTTACGGTTCAGCTC+AGG + chr7_2:7030851-7030870 Msa1046530:intron 45.0%
CATGACTAGGAACCGAAGTA+TGG - chr7_2:7031020-7031039 None:intergenic 45.0%
! AAGGTACCAAGCAGAAATGG+AGG + chr7_2:7031104-7031123 Msa1046530:CDS 45.0%
TCTGGAAGGAGATTCAGCTT+TGG + chr7_2:7031191-7031210 Msa1046530:CDS 45.0%
TTCAGACAAGGCAACTAAGG+AGG + chr7_2:7031353-7031372 Msa1046530:CDS 45.0%
TCAGACAAGGCAACTAAGGA+GGG + chr7_2:7031354-7031373 Msa1046530:CDS 45.0%
CATTCACTTCTCCCTCACAA+TGG - chr7_2:7031398-7031417 None:intergenic 45.0%
TTCTCGTGGAGGGATTGAGA+AGG + chr7_2:7027998-7028017 Msa1046530:CDS 50.0%
GTTGAACTCACGCCTTTGCA+GGG - chr7_2:7028709-7028728 None:intergenic 50.0%
AGTTGAACTCACGCCTTTGC+AGG - chr7_2:7028710-7028729 None:intergenic 50.0%
CCTAGAGACTCATCAGGGTT+AGG - chr7_2:7028819-7028838 None:intergenic 50.0%
CCTAACCCTGATGAGTCTCT+AGG + chr7_2:7028816-7028835 Msa1046530:intron 50.0%
GCACAAACCAGAAGATGCAG+GGG - chr7_2:7029138-7029157 None:intergenic 50.0%
ACTGGATGTGTTCCTGGAGA+AGG - chr7_2:7029304-7029323 None:intergenic 50.0%
AAGTCGACTGGATGTGTTCC+TGG - chr7_2:7029310-7029329 None:intergenic 50.0%
! CCTGACTTCTGAAAGTCGAC+TGG - chr7_2:7029322-7029341 None:intergenic 50.0%
! CCAGTCGACTTTCAGAAGTC+AGG + chr7_2:7029319-7029338 Msa1046530:CDS 50.0%
AGGCTTCGGCTAAATCATGG+CGG + chr7_2:7029467-7029486 Msa1046530:intron 50.0%
GCGGCATCATGACTTTGTTG+TGG + chr7_2:7029486-7029505 Msa1046530:intron 50.0%
GACCACACTTGGCACATTCA+AGG - chr7_2:7029658-7029677 None:intergenic 50.0%
! GTGTGGGTCGGTTTCACAAT+AGG - chr7_2:7029877-7029896 None:intergenic 50.0%
GAATCGGGCCAAACCAATGA+CGG + chr7_2:7030803-7030822 Msa1046530:intron 50.0%
CTATGAGGCACACAAACACC+TGG - chr7_2:7030979-7030998 None:intergenic 50.0%
CAGGTGTTTGTGTGCCTCAT+AGG + chr7_2:7030977-7030996 Msa1046530:intron 50.0%
! GAGCATTGTAACCGACTACG+CGG + chr7_2:7031149-7031168 Msa1046530:CDS 50.0%
AGCATTGTAACCGACTACGC+GGG + chr7_2:7031150-7031169 Msa1046530:CDS 50.0%
TCCAGAAACCGTTGTTGCAG+TGG - chr7_2:7031177-7031196 None:intergenic 50.0%
! CTGCAACAACGGTTTCTGGA+AGG + chr7_2:7031177-7031196 Msa1046530:CDS 50.0%
! GGAAGGAGATTCAGCTTTGG+TGG + chr7_2:7031194-7031213 Msa1046530:CDS 50.0%
CGATTCTTGTCAGACTCCTG+AGG + chr7_2:7031236-7031255 Msa1046530:CDS 50.0%
ACTCCTGAGGAGAGTAGTTC+TGG + chr7_2:7031249-7031268 Msa1046530:CDS 50.0%
TCACCAGAACTACTCTCCTC+AGG - chr7_2:7031255-7031274 None:intergenic 50.0%
AACATGGATGCTTCTTCCGG+TGG + chr7_2:7031300-7031319 Msa1046530:CDS 50.0%
AGAATCCACTCTTGCTCCAC+CGG - chr7_2:7031319-7031338 None:intergenic 50.0%
TGTGAGGGAGAAGTGAATGC+TGG + chr7_2:7031399-7031418 Msa1046530:CDS 50.0%
AGACTCATCAGGGTTAGGGC+AGG - chr7_2:7028814-7028833 None:intergenic 55.0%
CTGACTTCTTCCTCCTCCGA+CGG - chr7_2:7030279-7030298 None:intergenic 55.0%
GGGCCAAACCAATGACGGTT+TGG + chr7_2:7030808-7030827 Msa1046530:intron 55.0%
GCATTGTAACCGACTACGCG+GGG + chr7_2:7031151-7031170 Msa1046530:CDS 55.0%
GCCACTGCAACAACGGTTTC+TGG + chr7_2:7031173-7031192 Msa1046530:CDS 55.0%
TTCTTCCGGTGGAGCAAGAG+TGG + chr7_2:7031311-7031330 Msa1046530:CDS 55.0%
GAGGGAGAAGTGAATGCTGG+CGG + chr7_2:7031402-7031421 Msa1046530:CDS 55.0%
AGATGCAGGGGTCCACCGTT+TGG - chr7_2:7029126-7029145 None:intergenic 60.0%
ACTTCTTCCTCCTCCGACGG+CGG - chr7_2:7030276-7030295 None:intergenic 60.0%
CGGTGGACCCCTGCATCTTC+TGG + chr7_2:7029128-7029147 Msa1046530:CDS 65.0%
TTGCAGTGGCCCCGCGTAGT+CGG - chr7_2:7031163-7031182 None:intergenic 65.0%
ACGCGGGGCCACTGCAACAA+CGG + chr7_2:7031166-7031185 Msa1046530:CDS 65.0%
TGGGCGTCCAACGCCGCCGT+CGG + chr7_2:7030260-7030279 Msa1046530:CDS 75.0%
TCCAACGCCGCCGTCGGAGG+AGG + chr7_2:7030266-7030285 Msa1046530:CDS 75.0%
TCCTCCTCCGACGGCGGCGT+TGG - chr7_2:7030270-7030289 None:intergenic 75.0%
! GCGTCCAACGCCGCCGTCGG+AGG + chr7_2:7030263-7030282 Msa1046530:CDS 80.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 7027082 7031479 7027082 ID=Msa1046530;Name=Msa1046530
chr7_2 mRNA 7027082 7031479 7027082 ID=Msa1046530-mRNA-1;Parent=Msa1046530;Name=Msa1046530-mRNA-1;_AED=0.09;_eAED=0.09;_QI=126|0.83|0.57|1|0.83|0.71|7|0|437
chr7_2 exon 7027082 7027190 7027082 ID=Msa1046530-mRNA-1:exon:1693;Parent=Msa1046530-mRNA-1
chr7_2 exon 7027549 7027738 7027549 ID=Msa1046530-mRNA-1:exon:1694;Parent=Msa1046530-mRNA-1
chr7_2 exon 7027941 7028019 7027941 ID=Msa1046530-mRNA-1:exon:1695;Parent=Msa1046530-mRNA-1
chr7_2 exon 7028987 7029149 7028987 ID=Msa1046530-mRNA-1:exon:1696;Parent=Msa1046530-mRNA-1
chr7_2 exon 7029242 7029367 7029242 ID=Msa1046530-mRNA-1:exon:1697;Parent=Msa1046530-mRNA-1
chr7_2 exon 7030101 7030465 7030101 ID=Msa1046530-mRNA-1:exon:1698;Parent=Msa1046530-mRNA-1
chr7_2 exon 7031072 7031479 7031072 ID=Msa1046530-mRNA-1:exon:1699;Parent=Msa1046530-mRNA-1
chr7_2 five_prime_UTR 7027082 7027190 7027082 ID=Msa1046530-mRNA-1:five_prime_utr;Parent=Msa1046530-mRNA-1
chr7_2 five_prime_UTR 7027549 7027565 7027549 ID=Msa1046530-mRNA-1:five_prime_utr;Parent=Msa1046530-mRNA-1
chr7_2 CDS 7027566 7027738 7027566 ID=Msa1046530-mRNA-1:cds;Parent=Msa1046530-mRNA-1
chr7_2 CDS 7027941 7028019 7027941 ID=Msa1046530-mRNA-1:cds;Parent=Msa1046530-mRNA-1
chr7_2 CDS 7028987 7029149 7028987 ID=Msa1046530-mRNA-1:cds;Parent=Msa1046530-mRNA-1
chr7_2 CDS 7029242 7029367 7029242 ID=Msa1046530-mRNA-1:cds;Parent=Msa1046530-mRNA-1
chr7_2 CDS 7030101 7030465 7030101 ID=Msa1046530-mRNA-1:cds;Parent=Msa1046530-mRNA-1
chr7_2 CDS 7031072 7031479 7031072 ID=Msa1046530-mRNA-1:cds;Parent=Msa1046530-mRNA-1
Gene Sequence

>Msa1046530

ATGGCATCAACATCATGTTTTTTCAACAACAATGATTTCCCTATGAAAGTGGTAGCTCCTATGTCTCATTCATATCCTGAACCTCTTGCAAAATATGATGATGTTGTGGCAAATCCCAAGCTCTTTATGCTTACATTGGAGAAGCTTCATGCTTCTATGGGTACTAAGTTCATGGTTCCCATTATTGGAGGAAAAGAACTAGATTTGTGTCGACTCTTCATTGAAGTGACTTCTCGTGGAGGGATTGAGAAGCTTATGAAAGAGAGAAGATGGAAAGAAGTAACTGCAGCTTTCAGTTTTCCATCAACAGCAACCAATGCTTCCTTTGTGCTCAGAAAATACTATTCTTCATTGCTTTATCACTATGAGCAAATCTACTATTTTAGATCCAAACGGTGGACCCCTGCATCTTCTGATGCTTTGCAGAATCAATCAACCATGTCTGTTCCAGCTTCAATAACGCAATTTTTGCAGCCTTCTCCAGGAACACATCCAGTCGACTTTCAGAAGTCAGGGGTTAATGCTTCTGAATTGCCTCAAGTGTCTTCTTCTGGATCTTCACTTGTTGGAGTTATTGATGGAAAGTTTGAAAGTGGATATCTAGTTTCAGTTTCAGTAGGTTCAGAGACACTCAAAGGTGTACTATATGAGTCTCCACAAAGCATTAAAATTAATAATAACAATATTGCATCTGCTGCATTGGGCGTCCAACGCCGCCGTCGGAGGAGGAAGAAGTCAGAAATAAAAAGGAGAGATCCTGCACATCCAAAACCTAACAGAAGTGGTTACAATTTCTTCTTTGCTGAACAACATGCAAGACTAAAGCTACTAAACCAAACCATGGACAAGGATATTAGTAGAATGATTGGTGAACTTTGGAACAACTTAAAAGAGTCTGAGAAAACAGTTTATCAAGAAAAGGCTATTAAGGATAAAGAAAGGTACCAAGCAGAAATGGAGGATTATCGCGATAAAATGAAGACGAGCATTGTAACCGACTACGCGGGGCCACTGCAACAACGGTTTCTGGAAGGAGATTCAGCTTTGGTGGACATTGACATAAAAATGCACGATTCTTGTCAGACTCCTGAGGAGAGTAGTTCTGGTGAAAGTGACTATGTTGCAGATGATATCAACATGGATGCTTCTTCCGGTGGAGCAAGAGTGGATTCTGAAGCTTTTGTTGATTCAGACAAGGCAACTAAGGAGGGAGTTATTGAAGTTCTTAGCCATTGTGAGGGAGAAGTGAATGCTGGCGGAATTCAACAGACTCAAAAGATGAATGAGAGCCAAAACATGTTATCCTTACTTTAG

Protein sequence

>Msa1046530

MASTSCFFNNNDFPMKVVAPMSHSYPEPLAKYDDVVANPKLFMLTLEKLHASMGTKFMVPIIGGKELDLCRLFIEVTSRGGIEKLMKERRWKEVTAAFSFPSTATNASFVLRKYYSSLLYHYEQIYYFRSKRWTPASSDALQNQSTMSVPASITQFLQPSPGTHPVDFQKSGVNASELPQVSSSGSSLVGVIDGKFESGYLVSVSVGSETLKGVLYESPQSIKINNNNIASAALGVQRRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMDKDISRMIGELWNNLKESEKTVYQEKAIKDKERYQAEMEDYRDKMKTSIVTDYAGPLQQRFLEGDSALVDIDIKMHDSCQTPEESSSGESDYVADDINMDASSGGARVDSEAFVDSDKATKEGVIEVLSHCEGEVNAGGIQQTQKMNESQNMLSLL*