Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048650 | XP_003621170.1 | 95.956 | 272 | 8 | 1 | 1 | 269 | 1 | 272 | 0.0 | 535 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048650 | sp|Q8LAT0|ATB20_ARATH | 45.091 | 275 | 129 | 11 | 1 | 269 | 16 | 274 | 3.14e-64 | 205 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048650 | G7KZX6 | 95.956 | 272 | 8 | 1 | 1 | 269 | 1 | 272 | 0.0 | 535 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1048650 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048650 | MtrunA17_Chr7g0217111 | 95.956 | 272 | 8 | 1 | 1 | 269 | 1 | 272 | 0.0 | 535 |
| Msa1048650 | MtrunA17_Chr6g0453021 | 61.856 | 291 | 67 | 10 | 1 | 269 | 1 | 269 | 3.97e-110 | 319 |
| Msa1048650 | MtrunA17_Chr8g0362151 | 52.113 | 284 | 111 | 10 | 1 | 268 | 1 | 275 | 4.58e-76 | 233 |
| Msa1048650 | MtrunA17_Chr5g0416391 | 49.462 | 279 | 124 | 7 | 1 | 268 | 4 | 276 | 1.63e-70 | 218 |
| Msa1048650 | MtrunA17_Chr3g0119291 | 52.713 | 129 | 57 | 2 | 68 | 193 | 47 | 174 | 2.79e-33 | 122 |
| Msa1048650 | MtrunA17_Chr5g0415941 | 58.559 | 111 | 44 | 1 | 62 | 172 | 74 | 182 | 1.22e-32 | 122 |
| Msa1048650 | MtrunA17_Chr4g0060031 | 45.026 | 191 | 92 | 6 | 61 | 249 | 81 | 260 | 1.77e-32 | 121 |
| Msa1048650 | MtrunA17_Chr6g0450991 | 58.416 | 101 | 41 | 1 | 72 | 172 | 63 | 162 | 1.72e-30 | 115 |
| Msa1048650 | MtrunA17_Chr3g0123691 | 59.794 | 97 | 39 | 0 | 76 | 172 | 59 | 155 | 2.69e-30 | 115 |
| Msa1048650 | MtrunA17_Chr8g0381741 | 57.732 | 97 | 41 | 0 | 76 | 172 | 53 | 149 | 3.65e-29 | 112 |
| Msa1048650 | MtrunA17_Chr7g0265521 | 50.000 | 134 | 55 | 3 | 64 | 193 | 51 | 176 | 3.80e-29 | 110 |
| Msa1048650 | MtrunA17_Chr8g0362751 | 58.333 | 96 | 40 | 0 | 77 | 172 | 89 | 184 | 6.42e-27 | 105 |
| Msa1048650 | MtrunA17_Chr1g0179581 | 58.537 | 82 | 34 | 0 | 75 | 156 | 26 | 107 | 6.73e-25 | 95.9 |
| Msa1048650 | MtrunA17_Chr4g0055851 | 44.800 | 125 | 65 | 1 | 46 | 170 | 89 | 209 | 7.70e-24 | 97.4 |
| Msa1048650 | MtrunA17_Chr3g0127511 | 44.355 | 124 | 60 | 3 | 80 | 197 | 41 | 161 | 5.74e-22 | 91.7 |
| Msa1048650 | MtrunA17_Chr8g0346251 | 51.163 | 86 | 35 | 1 | 84 | 162 | 48 | 133 | 5.25e-21 | 89.4 |
| Msa1048650 | MtrunA17_Chr5g0399491 | 41.406 | 128 | 65 | 2 | 46 | 164 | 97 | 223 | 3.01e-20 | 88.2 |
| Msa1048650 | MtrunA17_Chr1g0175651 | 43.220 | 118 | 59 | 2 | 55 | 171 | 131 | 241 | 7.60e-20 | 87.0 |
| Msa1048650 | MtrunA17_Chr7g0258831 | 40.157 | 127 | 69 | 1 | 45 | 171 | 128 | 247 | 1.06e-19 | 86.7 |
| Msa1048650 | MtrunA17_Chr1g0151971 | 48.958 | 96 | 42 | 1 | 76 | 171 | 129 | 217 | 2.99e-19 | 85.1 |
| Msa1048650 | MtrunA17_Chr5g0400781 | 45.192 | 104 | 50 | 1 | 68 | 171 | 114 | 210 | 3.93e-19 | 84.3 |
| Msa1048650 | MtrunA17_Chr4g0054421 | 44.231 | 104 | 51 | 1 | 68 | 171 | 118 | 214 | 4.93e-19 | 84.3 |
| Msa1048650 | MtrunA17_Chr8g0335131 | 49.474 | 95 | 44 | 1 | 76 | 170 | 145 | 235 | 9.64e-19 | 84.0 |
| Msa1048650 | MtrunA17_Chr2g0308611 | 47.959 | 98 | 47 | 2 | 76 | 173 | 199 | 292 | 2.83e-18 | 83.2 |
| Msa1048650 | MtrunA17_Chr4g0071411 | 47.674 | 86 | 45 | 0 | 79 | 164 | 90 | 175 | 4.03e-18 | 80.9 |
| Msa1048650 | MtrunA17_Chr4g0044091 | 44.944 | 89 | 49 | 0 | 76 | 164 | 64 | 152 | 1.25e-16 | 76.3 |
| Msa1048650 | MtrunA17_Chr5g0403701 | 48.889 | 90 | 46 | 0 | 77 | 166 | 53 | 142 | 7.80e-16 | 74.3 |
| Msa1048650 | MtrunA17_Chr5g0403691 | 54.167 | 72 | 33 | 0 | 77 | 148 | 53 | 124 | 8.75e-15 | 71.6 |
| Msa1048650 | MtrunA17_Chr3g0135331 | 32.298 | 161 | 93 | 3 | 56 | 202 | 120 | 278 | 2.22e-14 | 71.6 |
| Msa1048650 | MtrunA17_Chr2g0299031 | 43.299 | 97 | 51 | 1 | 74 | 170 | 79 | 171 | 1.26e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048650 | AT3G01220.1 | 45.091 | 275 | 129 | 11 | 1 | 269 | 16 | 274 | 3.19e-65 | 205 |
| Msa1048650 | AT5G15150.1 | 45.704 | 291 | 123 | 11 | 1 | 268 | 22 | 300 | 1.01e-62 | 200 |
| Msa1048650 | AT1G69780.1 | 44.755 | 286 | 126 | 11 | 6 | 268 | 11 | 287 | 3.85e-61 | 195 |
| Msa1048650 | AT1G26960.1 | 43.431 | 274 | 116 | 11 | 1 | 268 | 8 | 248 | 1.34e-54 | 177 |
| Msa1048650 | AT5G65310.2 | 49.265 | 136 | 64 | 1 | 47 | 177 | 19 | 154 | 1.13e-32 | 121 |
| Msa1048650 | AT5G65310.1 | 52.800 | 125 | 48 | 1 | 64 | 177 | 48 | 172 | 1.15e-32 | 122 |
| Msa1048650 | AT2G22430.1 | 57.732 | 97 | 41 | 0 | 76 | 172 | 61 | 157 | 7.60e-31 | 117 |
| Msa1048650 | AT4G40060.1 | 56.701 | 97 | 42 | 0 | 76 | 172 | 58 | 154 | 1.01e-30 | 116 |
| Msa1048650 | AT3G01470.1 | 56.701 | 97 | 42 | 0 | 76 | 172 | 67 | 163 | 6.22e-30 | 114 |
| Msa1048650 | AT2G46680.1 | 50.549 | 91 | 45 | 0 | 80 | 170 | 35 | 125 | 4.69e-24 | 97.8 |
| Msa1048650 | AT5G03790.1 | 35.052 | 194 | 89 | 5 | 1 | 181 | 14 | 183 | 5.69e-23 | 94.4 |
| Msa1048650 | AT1G27045.1 | 50.000 | 96 | 48 | 0 | 77 | 172 | 68 | 163 | 2.61e-22 | 92.4 |
| Msa1048650 | AT3G61890.1 | 48.889 | 90 | 46 | 0 | 80 | 169 | 33 | 122 | 5.10e-22 | 92.0 |
| Msa1048650 | AT1G27045.5 | 50.000 | 96 | 48 | 0 | 77 | 172 | 25 | 120 | 5.51e-22 | 90.5 |
| Msa1048650 | AT1G27045.3 | 50.000 | 96 | 48 | 0 | 77 | 172 | 25 | 120 | 5.51e-22 | 90.5 |
| Msa1048650 | AT1G27045.2 | 50.000 | 96 | 48 | 0 | 77 | 172 | 17 | 112 | 6.57e-22 | 90.1 |
| Msa1048650 | AT1G27045.4 | 50.538 | 93 | 46 | 0 | 77 | 169 | 68 | 160 | 1.18e-21 | 91.3 |
| Msa1048650 | AT2G46680.2 | 48.837 | 86 | 44 | 0 | 80 | 165 | 35 | 120 | 1.24e-21 | 91.3 |
| Msa1048650 | AT5G03790.2 | 49.485 | 97 | 47 | 1 | 77 | 173 | 77 | 171 | 3.10e-21 | 89.0 |
| Msa1048650 | AT2G36610.1 | 45.946 | 111 | 45 | 2 | 69 | 171 | 63 | 166 | 2.82e-20 | 86.3 |
| Msa1048650 | AT4G17460.1 | 47.664 | 107 | 51 | 2 | 64 | 170 | 123 | 224 | 6.61e-20 | 87.0 |
| Msa1048650 | AT5G47370.1 | 35.484 | 186 | 92 | 5 | 6 | 170 | 41 | 219 | 2.14e-19 | 85.9 |
| Msa1048650 | AT2G18550.1 | 43.590 | 117 | 58 | 2 | 77 | 192 | 61 | 170 | 3.38e-19 | 84.0 |
| Msa1048650 | AT2G01430.1 | 46.078 | 102 | 55 | 0 | 63 | 164 | 125 | 226 | 6.08e-19 | 84.3 |
| Msa1048650 | AT5G53980.1 | 47.872 | 94 | 49 | 0 | 74 | 167 | 8 | 101 | 1.13e-18 | 80.9 |
| Msa1048650 | AT4G16780.1 | 44.545 | 110 | 57 | 1 | 61 | 170 | 113 | 218 | 1.30e-18 | 83.6 |
| Msa1048650 | AT3G60390.1 | 44.444 | 108 | 56 | 1 | 63 | 170 | 148 | 251 | 2.53e-18 | 83.2 |
| Msa1048650 | AT5G06710.1 | 47.917 | 96 | 46 | 1 | 76 | 171 | 189 | 280 | 3.50e-18 | 83.2 |
| Msa1048650 | AT4G37790.1 | 44.037 | 109 | 52 | 2 | 63 | 171 | 114 | 213 | 4.60e-18 | 82.0 |
| Msa1048650 | AT2G22800.1 | 42.241 | 116 | 51 | 3 | 56 | 171 | 101 | 200 | 2.64e-17 | 79.7 |
| Msa1048650 | AT2G44910.1 | 46.316 | 95 | 47 | 1 | 76 | 170 | 162 | 252 | 7.73e-17 | 79.3 |
| Msa1048650 | AT4G36740.1 | 42.991 | 107 | 56 | 1 | 77 | 178 | 55 | 161 | 9.87e-17 | 77.4 |
| Msa1048650 | AT4G36740.2 | 42.991 | 107 | 56 | 1 | 77 | 178 | 56 | 162 | 1.04e-16 | 77.0 |
| Msa1048650 | AT1G70920.1 | 42.857 | 98 | 55 | 1 | 68 | 164 | 59 | 156 | 2.08e-15 | 73.6 |
| Msa1048650 | AT1G70920.2 | 42.857 | 98 | 55 | 1 | 68 | 164 | 29 | 126 | 3.14e-15 | 72.4 |
| Msa1048650 | AT5G66700.1 | 52.857 | 70 | 33 | 0 | 73 | 142 | 67 | 136 | 2.93e-14 | 70.5 |
| Msa1048650 | AT2G01430.2 | 50.000 | 66 | 33 | 0 | 63 | 128 | 125 | 190 | 6.83e-12 | 63.9 |
| Msa1048650 | AT5G06710.4 | 54.717 | 53 | 24 | 0 | 76 | 128 | 189 | 241 | 1.34e-11 | 63.9 |
| Msa1048650 | AT5G46880.3 | 38.983 | 118 | 62 | 3 | 64 | 179 | 99 | 208 | 6.24e-11 | 63.2 |
| Msa1048650 | AT5G46880.1 | 38.983 | 118 | 62 | 3 | 64 | 179 | 99 | 208 | 6.24e-11 | 63.2 |
| Msa1048650 | AT5G46880.2 | 38.983 | 118 | 62 | 3 | 64 | 179 | 99 | 208 | 6.24e-11 | 63.2 |
| Msa1048650 | AT1G79840.1 | 33.333 | 117 | 57 | 1 | 76 | 171 | 103 | 219 | 6.29e-11 | 62.8 |
| Msa1048650 | AT1G79840.5 | 33.333 | 117 | 57 | 1 | 76 | 171 | 103 | 219 | 6.40e-11 | 62.8 |
| Msa1048650 | AT1G79840.3 | 33.333 | 117 | 57 | 1 | 76 | 171 | 45 | 161 | 7.18e-11 | 62.8 |
| Msa1048650 | AT1G79840.6 | 33.333 | 117 | 57 | 1 | 76 | 171 | 45 | 161 | 7.18e-11 | 62.8 |
| Msa1048650 | AT1G79840.2 | 33.333 | 117 | 57 | 1 | 76 | 171 | 132 | 248 | 7.51e-11 | 62.8 |
| Msa1048650 | AT1G79840.4 | 33.333 | 117 | 57 | 1 | 76 | 171 | 103 | 219 | 8.29e-11 | 62.4 |
Find 63 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGAGAAGAGCTTTGAATT+TGG | 0.186029 | 7_2:-10373821 | Msa1048650:CDS |
| AAAGAAGATTAGGCTGAATT+TGG | 0.191701 | 7_2:-10373858 | Msa1048650:CDS |
| GTGCAACTTGCTAAGGCTTT+AGG | 0.214413 | 7_2:-10373773 | Msa1048650:CDS |
| TGCAACTTGCTAAGGCTTTA+GGG | 0.260540 | 7_2:-10373772 | Msa1048650:CDS |
| AGTAGTTGGGGTATATTGTT+AGG | 0.287974 | 7_2:+10371853 | None:intergenic |
| AAGTTGGTAGAAGGCTAATT+AGG | 0.295400 | 7_2:+10371884 | None:intergenic |
| GATATACAAAATCATTAATA+AGG | 0.296807 | 7_2:+10371718 | None:intergenic |
| TTGAGAAGAGCTTTGAATTT+GGG | 0.313267 | 7_2:-10373820 | Msa1048650:CDS |
| TGAAAGAAACTGAGGGTTCT+TGG | 0.315616 | 7_2:-10371999 | Msa1048650:CDS |
| AGCCTAGACAAATTGCTATA+TGG | 0.333381 | 7_2:-10373745 | Msa1048650:CDS |
| TTTGTATATCATTGATCAAT+TGG | 0.336469 | 7_2:-10371705 | Msa1048650:three_prime_UTR |
| CACATCACTAGCATTCAATA+TGG | 0.378757 | 7_2:-10374542 | Msa1048650:exon |
| AACCCTCAGTTTCTTTCATT+AGG | 0.390455 | 7_2:+10372004 | None:intergenic |
| GGGTTTGGCACTCACTTTCA+TGG | 0.390756 | 7_2:+10374675 | None:intergenic |
| AGCATCAGAACCTCTGGCCT+TGG | 0.392592 | 7_2:-10371765 | Msa1048650:CDS |
| GGTTTAATGAAGTTGGTAGA+AGG | 0.399111 | 7_2:+10371875 | None:intergenic |
| TTTCATGGTGACAAAAGTAT+TGG | 0.405200 | 7_2:+10374690 | None:intergenic |
| TGATGTGAATTGAAGTAGTT+GGG | 0.408685 | 7_2:+10371840 | None:intergenic |
| AATATATATTCAGAGGGGTT+TGG | 0.416697 | 7_2:+10374660 | None:intergenic |
| TTGTTAGGGTTTAATGAAGT+TGG | 0.422091 | 7_2:+10371868 | None:intergenic |
| TGTGATAAATTCATGCAAAT+TGG | 0.443285 | 7_2:+10374561 | None:intergenic |
| TTGATGTGAATTGAAGTAGT+TGG | 0.468809 | 7_2:+10371839 | None:intergenic |
| AAGTGTTGAGGTGGAAAAGA+AGG | 0.489869 | 7_2:+10374448 | None:intergenic |
| AACATGAAACTATGAGGTGG+TGG | 0.502381 | 7_2:+10374514 | None:intergenic |
| AAGAAAAGTGCAACTTGCTA+AGG | 0.504058 | 7_2:-10373780 | Msa1048650:CDS |
| GTAGTTGGGGTATATTGTTA+GGG | 0.504855 | 7_2:+10371854 | None:intergenic |
| TTGATGAGCATCAGAACCTC+TGG | 0.507447 | 7_2:-10371771 | Msa1048650:CDS |
| AGTGTTGAGGTGGAAAAGAA+GGG | 0.508674 | 7_2:+10374449 | None:intergenic |
| CAAATTCAAAGCTCTTCTCA+AGG | 0.519428 | 7_2:+10373822 | None:intergenic |
| AGTTCTGTTTCTTCACAGAA+TGG | 0.523751 | 7_2:-10371913 | Msa1048650:CDS |
| GAAGAAATTTGAAGCTGTCA+AGG | 0.526329 | 7_2:-10373660 | Msa1048650:CDS |
| CAGCTTCAAATTTCTTCTTG+AGG | 0.527423 | 7_2:+10373666 | None:intergenic |
| GCTGAATTTGGATCAAGTGC+AGG | 0.529592 | 7_2:-10373846 | Msa1048650:CDS |
| AAAAGCAAGGATTGGTGTGA+AGG | 0.539700 | 7_2:-10372039 | Msa1048650:CDS |
| CGCTGCAAACCTTAGTATTG+CGG | 0.543532 | 7_2:-10371660 | Msa1048650:three_prime_UTR |
| TGGTGACAAAAGTATTGGAA+AGG | 0.549139 | 7_2:+10374695 | None:intergenic |
| CCACCTCAACACTTTCAACA+AGG | 0.552469 | 7_2:-10374439 | Msa1048650:intron |
| CCTTGTTGAAAGTGTTGAGG+TGG | 0.554667 | 7_2:+10374439 | None:intergenic |
| ACTGAGGGTTCTTGGAGCAA+TGG | 0.557955 | 7_2:-10371991 | Msa1048650:CDS |
| TTGAGGTGGAAAAGAAGGGA+AGG | 0.568416 | 7_2:+10374453 | None:intergenic |
| AGCAAGGATTGGTGTGAAGG+TGG | 0.575668 | 7_2:-10372036 | Msa1048650:CDS |
| GATGATGAGTTATCTGATGA+TGG | 0.580302 | 7_2:-10373899 | Msa1048650:CDS |
| ATGATATAATATATATTCAG+AGG | 0.582448 | 7_2:+10374653 | None:intergenic |
| GTTGAATCATGATCTTCATG+AGG | 0.589028 | 7_2:+10374487 | None:intergenic |
| AAATTCAAAGCTCTTCTCAA+GGG | 0.589863 | 7_2:+10373823 | None:intergenic |
| ATCAATGTTGTGAAACATGT+TGG | 0.592933 | 7_2:+10371789 | None:intergenic |
| TGATATAATATATATTCAGA+GGG | 0.597047 | 7_2:+10374654 | None:intergenic |
| CATGATCATCACGAAGTGCA+TGG | 0.597777 | 7_2:-10373923 | Msa1048650:CDS |
| AACCATATAGCAATTTGTCT+AGG | 0.597887 | 7_2:+10373743 | None:intergenic |
| ACATGAAACTATGAGGTGGT+GGG | 0.601396 | 7_2:+10374515 | None:intergenic |
| TTGCAGTTACAAACTTACAA+TGG | 0.616632 | 7_2:-10371602 | Msa1048650:three_prime_UTR |
| TAATCAGAAACTACAAGCAG+AGG | 0.617126 | 7_2:-10373612 | Msa1048650:intron |
| AAATGATGCATCTATGTCCA+AGG | 0.620204 | 7_2:+10371748 | None:intergenic |
| ATGCCTAATGAAAGAAACTG+AGG | 0.620720 | 7_2:-10372007 | Msa1048650:CDS |
| TTGAATCATGATCTTCATGA+GGG | 0.629356 | 7_2:+10374488 | None:intergenic |
| GGGTTAAACATGAAACTATG+AGG | 0.630990 | 7_2:+10374508 | None:intergenic |
| TGACCTTGTTGAAAGTGTTG+AGG | 0.631537 | 7_2:+10374436 | None:intergenic |
| TCTGATGATGGATTCCAAAG+TGG | 0.632276 | 7_2:-10373887 | Msa1048650:CDS |
| TGCCTAATGAAAGAAACTGA+GGG | 0.635799 | 7_2:-10372006 | Msa1048650:CDS |
| GCATCTATGTCCAAGGCCAG+AGG | 0.638650 | 7_2:+10371755 | None:intergenic |
| GATGTGAATTGAAGTAGTTG+GGG | 0.704596 | 7_2:+10371841 | None:intergenic |
| TTAAACATGAAACTATGAGG+TGG | 0.709265 | 7_2:+10374511 | None:intergenic |
| GATATAATATATATTCAGAG+GGG | 0.715673 | 7_2:+10374655 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTTATATCAATTACAA+AGG | + | chr7_2:10373409-10373428 | None:intergenic | 10.0% |
| !! | GTAATAAAGTAAAATAAATA+AGG | + | chr7_2:10373474-10373493 | None:intergenic | 10.0% |
| !!! | TTATTTTACTTTATTACAAT+TGG | - | chr7_2:10373477-10373496 | Msa1048650:intron | 10.0% |
| !! | AAAGTTCAAAATAATTAATT+TGG | - | chr7_2:10373850-10373869 | Msa1048650:CDS | 10.0% |
| !!! | ATAACTTTTCATATATTTAT+AGG | - | chr7_2:10373902-10373921 | Msa1048650:CDS | 10.0% |
| !!! | TAACTTTTCATATATTTATA+GGG | - | chr7_2:10373903-10373922 | Msa1048650:CDS | 10.0% |
| !! | TGATATAATATATATTCAGA+GGG | + | chr7_2:10371636-10371655 | None:intergenic | 15.0% |
| !! | ATGATATAATATATATTCAG+AGG | + | chr7_2:10371637-10371656 | None:intergenic | 15.0% |
| !! | TATCTCTTTATATCATAAAA+AGG | - | chr7_2:10371892-10371911 | Msa1048650:CDS | 15.0% |
| !!! | ATTTAAAACAACAATAAAAC+CGG | + | chr7_2:10371921-10371940 | None:intergenic | 15.0% |
| !! | ATTAATTTATAGTCCAATTA+TGG | + | chr7_2:10372227-10372246 | None:intergenic | 15.0% |
| !! | TTATAAGTATCAAAATGTAT+TGG | - | chr7_2:10372958-10372977 | Msa1048650:intron | 15.0% |
| !!! | TAATTAATTTGGATTGAAAT+TGG | - | chr7_2:10373861-10373880 | Msa1048650:CDS | 15.0% |
| !! | GATATACAAAATCATTAATA+AGG | + | chr7_2:10374572-10374591 | None:intergenic | 15.0% |
| !! | GATATAATATATATTCAGAG+GGG | + | chr7_2:10371635-10371654 | None:intergenic | 20.0% |
| !! | TTATATCATAAAAAGGTAAC+CGG | - | chr7_2:10371899-10371918 | Msa1048650:CDS | 20.0% |
| !! | CCAATAATATAAAGTTTCAA+AGG | + | chr7_2:10372039-10372058 | None:intergenic | 20.0% |
| !!! | CCTTTGAAACTTTATATTAT+TGG | - | chr7_2:10372036-10372055 | Msa1048650:CDS | 20.0% |
| !!! | TACCAATTTAAAACCATAAT+TGG | - | chr7_2:10372211-10372230 | Msa1048650:intron | 20.0% |
| !!! | ATTAAAAAAGAGAGAGTATA+AGG | + | chr7_2:10372718-10372737 | None:intergenic | 20.0% |
| !!! | TTTTACCATTTTTAGTTATG+GGG | + | chr7_2:10373002-10373021 | None:intergenic | 20.0% |
| !!! | CTTTTACCATTTTTAGTTAT+GGG | + | chr7_2:10373003-10373022 | None:intergenic | 20.0% |
| !! | CATAACTAAAAATGGTAAAA+GGG | - | chr7_2:10373002-10373021 | Msa1048650:intron | 20.0% |
| !! | AATATTACTTTGATACACAA+AGG | + | chr7_2:10373076-10373095 | None:intergenic | 20.0% |
| !!! | CAAAGTAATATTGAAGTTTT+AGG | - | chr7_2:10373084-10373103 | Msa1048650:intron | 20.0% |
| !! | TTTAAACAACAACTTGTATT+TGG | - | chr7_2:10373189-10373208 | Msa1048650:intron | 20.0% |
| !! | TTAAACAACAACTTGTATTT+GGG | - | chr7_2:10373190-10373209 | Msa1048650:intron | 20.0% |
| !! | CTCTAATTCAATTATTAGTT+AGG | - | chr7_2:10373232-10373251 | Msa1048650:intron | 20.0% |
| !!! | ATAAATTGATACTTTTGTGT+TGG | - | chr7_2:10373424-10373443 | Msa1048650:intron | 20.0% |
| !!! | AAACATTAATTTGAAGCTAT+GGG | + | chr7_2:10373679-10373698 | None:intergenic | 20.0% |
| !!! | AAAACATTAATTTGAAGCTA+TGG | + | chr7_2:10373680-10373699 | None:intergenic | 20.0% |
| !! | CACATATATTGAATACAAAA+AGG | + | chr7_2:10373703-10373722 | None:intergenic | 20.0% |
| !!! | ACTTTTATGTTTTAACCTAA+TGG | - | chr7_2:10374200-10374219 | Msa1048650:intron | 20.0% |
| !! | TTTGTATATCATTGATCAAT+TGG | - | chr7_2:10374582-10374601 | Msa1048650:five_prime_UTR | 20.0% |
| ! | TGTGATAAATTCATGCAAAT+TGG | + | chr7_2:10371729-10371748 | None:intergenic | 25.0% |
| ! | ACTTTATATTATTGGACTCA+TGG | - | chr7_2:10372044-10372063 | Msa1048650:CDS | 25.0% |
| ! | TTATAATTGTGGTTGTGATA+CGG | + | chr7_2:10372129-10372148 | None:intergenic | 25.0% |
| !!! | GTCCAATTATGGTTTTAAAT+TGG | + | chr7_2:10372216-10372235 | None:intergenic | 25.0% |
| !!! | AAATTCCTAGTTCTGAATTA+TGG | + | chr7_2:10372256-10372275 | None:intergenic | 25.0% |
| !!! | GAAGAAATCAATGTCATTTT+CGG | - | chr7_2:10372324-10372343 | Msa1048650:intron | 25.0% |
| !!! | AAGAAATCAATGTCATTTTC+GGG | - | chr7_2:10372325-10372344 | Msa1048650:intron | 25.0% |
| ! | ATAATCCCCATAACTAAAAA+TGG | - | chr7_2:10372994-10373013 | Msa1048650:intron | 25.0% |
| !!! | CCTTTTACCATTTTTAGTTA+TGG | + | chr7_2:10373004-10373023 | None:intergenic | 25.0% |
| ! | CCATAACTAAAAATGGTAAA+AGG | - | chr7_2:10373001-10373020 | Msa1048650:intron | 25.0% |
| !!! | TTTTAGGAGCAATTCATAAA+GGG | - | chr7_2:10373100-10373119 | Msa1048650:intron | 25.0% |
| ! | TGAATCAAGATCAAGATTTA+TGG | + | chr7_2:10373157-10373176 | None:intergenic | 25.0% |
| ! | AGAGTTATACTATTTCATGA+TGG | + | chr7_2:10373216-10373235 | None:intergenic | 25.0% |
| ! | ATGTGTTAAAGCATATTAGT+TGG | + | chr7_2:10373770-10373789 | None:intergenic | 25.0% |
| ! | AACTAATATGCTTTAACACA+TGG | - | chr7_2:10373769-10373788 | Msa1048650:CDS | 25.0% |
| !!! | TAACATGTGCAATTTTAACA+TGG | + | chr7_2:10373829-10373848 | None:intergenic | 25.0% |
| !! | TTAATTTGGATTGAAATTGG+TGG | - | chr7_2:10373864-10373883 | Msa1048650:CDS | 25.0% |
| ! | TATAGGGTTTAAAAAATGAC+TGG | - | chr7_2:10373919-10373938 | Msa1048650:CDS | 25.0% |
| ! | ACAGAAAAATGTGATTAATG+TGG | - | chr7_2:10374656-10374675 | Msa1048650:five_prime_UTR | 25.0% |
| ! | TTTCATGGTGACAAAAGTAT+TGG | + | chr7_2:10371600-10371619 | None:intergenic | 30.0% |
| AATATATATTCAGAGGGGTT+TGG | + | chr7_2:10371630-10371649 | None:intergenic | 30.0% | |
| TTAAACATGAAACTATGAGG+TGG | + | chr7_2:10371779-10371798 | None:intergenic | 30.0% | |
| TTGAATCATGATCTTCATGA+GGG | + | chr7_2:10371802-10371821 | None:intergenic | 30.0% | |
| !!! | GTTGTTTTAAATTGCAGTTG+CGG | - | chr7_2:10371929-10371948 | Msa1048650:CDS | 30.0% |
| ATAAAGTTTCAAAGGACTCT+CGG | + | chr7_2:10372031-10372050 | None:intergenic | 30.0% | |
| !!! | GCACTTTTTTGTTTTGTCTT+AGG | - | chr7_2:10372286-10372305 | Msa1048650:intron | 30.0% |
| AAAGAAGATTAGGCTGAATT+TGG | - | chr7_2:10372429-10372448 | Msa1048650:intron | 30.0% | |
| AAATTCAAAGCTCTTCTCAA+GGG | + | chr7_2:10372467-10372486 | None:intergenic | 30.0% | |
| !! | TTGAGAAGAGCTTTGAATTT+GGG | - | chr7_2:10372467-10372486 | Msa1048650:intron | 30.0% |
| AACCATATAGCAATTTGTCT+AGG | + | chr7_2:10372547-10372566 | None:intergenic | 30.0% | |
| ! | ATGCACAATTTTTCTTCGAT+AGG | + | chr7_2:10372796-10372815 | None:intergenic | 30.0% |
| !!! | GTTTTAGGAGCAATTCATAA+AGG | - | chr7_2:10373099-10373118 | Msa1048650:intron | 30.0% |
| TTTAGGAGCAATTCATAAAG+GGG | - | chr7_2:10373101-10373120 | Msa1048650:intron | 30.0% | |
| CATGCAAAAACATATCACAA+TGG | + | chr7_2:10373264-10373283 | None:intergenic | 30.0% | |
| ! | GGTCACTTTATAAAGTCAAT+AGG | + | chr7_2:10373575-10373594 | None:intergenic | 30.0% |
| GAAAGTTAAAATGCGGATAT+TGG | + | chr7_2:10373596-10373615 | None:intergenic | 30.0% | |
| AAGCAGAGAAAGTTAAAATG+CGG | + | chr7_2:10373603-10373622 | None:intergenic | 30.0% | |
| TTCTCTGCTTGATTAATTGT+TGG | - | chr7_2:10373613-10373632 | Msa1048650:CDS | 30.0% | |
| ! | ATGATGATTGAAAGCATGTT+CGG | + | chr7_2:10374141-10374160 | None:intergenic | 30.0% |
| GTTACAAGCATTAAAAAGCA+AGG | - | chr7_2:10374235-10374254 | Msa1048650:intron | 30.0% | |
| AAGCATTAAAAAGCAAGGAT+TGG | - | chr7_2:10374240-10374259 | Msa1048650:intron | 30.0% | |
| TTGTTAGGGTTTAATGAAGT+TGG | + | chr7_2:10374422-10374441 | None:intergenic | 30.0% | |
| TGATGTGAATTGAAGTAGTT+GGG | + | chr7_2:10374450-10374469 | None:intergenic | 30.0% | |
| TTGATGTGAATTGAAGTAGT+TGG | + | chr7_2:10374451-10374470 | None:intergenic | 30.0% | |
| ATCAATGTTGTGAAACATGT+TGG | + | chr7_2:10374501-10374520 | None:intergenic | 30.0% | |
| ! | CATAGATGCATCATTTTCAT+TGG | - | chr7_2:10374546-10374565 | Msa1048650:five_prime_UTR | 30.0% |
| ! | TGTATTTTTCCGCAATACTA+AGG | + | chr7_2:10374639-10374658 | None:intergenic | 30.0% |
| TTGCAGTTACAAACTTACAA+TGG | - | chr7_2:10374685-10374704 | Msa1048650:five_prime_UTR | 30.0% | |
| CACATCACTAGCATTCAATA+TGG | - | chr7_2:10371745-10371764 | Msa1048650:exon | 35.0% | |
| GGGTTAAACATGAAACTATG+AGG | + | chr7_2:10371782-10371801 | None:intergenic | 35.0% | |
| GTTGAATCATGATCTTCATG+AGG | + | chr7_2:10371803-10371822 | None:intergenic | 35.0% | |
| AACCACAATTACAATCGCAT+CGG | + | chr7_2:10371998-10372017 | None:intergenic | 35.0% | |
| GTAGTCTGTAACTGTATTTG+CGG | - | chr7_2:10372076-10372095 | Msa1048650:intron | 35.0% | |
| ! | TGCGGTTGCAACATATTTTA+AGG | - | chr7_2:10372094-10372113 | Msa1048650:intron | 35.0% |
| AACCACAATTATAACCGCAT+TGG | - | chr7_2:10372135-10372154 | Msa1048650:intron | 35.0% | |
| TCGTAGCATAATTACATCAG+CGG | - | chr7_2:10372183-10372202 | Msa1048650:intron | 35.0% | |
| TGTGACCATAATTCAGAACT+AGG | - | chr7_2:10372248-10372267 | Msa1048650:intron | 35.0% | |
| GATGATGAGTTATCTGATGA+TGG | - | chr7_2:10372388-10372407 | Msa1048650:intron | 35.0% | |
| ! | TCTTCTTTTTCTCTCCACTT+TGG | + | chr7_2:10372417-10372436 | None:intergenic | 35.0% |
| GTGGAGAGAAAAAGAAGATT+AGG | - | chr7_2:10372419-10372438 | Msa1048650:intron | 35.0% | |
| CAAATTCAAAGCTCTTCTCA+AGG | + | chr7_2:10372468-10372487 | None:intergenic | 35.0% | |
| !! | CTTGAGAAGAGCTTTGAATT+TGG | - | chr7_2:10372466-10372485 | Msa1048650:intron | 35.0% |
| ! | CAAGTTGCACTTTTCTTTCT+GGG | + | chr7_2:10372504-10372523 | None:intergenic | 35.0% |
| !! | AAGAAAAGTGCAACTTGCTA+AGG | - | chr7_2:10372507-10372526 | Msa1048650:intron | 35.0% |
| AGCCTAGACAAATTGCTATA+TGG | - | chr7_2:10372542-10372561 | Msa1048650:intron | 35.0% | |
| CAGCTTCAAATTTCTTCTTG+AGG | + | chr7_2:10372624-10372643 | None:intergenic | 35.0% | |
| ! | GAAGAAATTTGAAGCTGTCA+AGG | - | chr7_2:10372627-10372646 | Msa1048650:intron | 35.0% |
| TAATCAGAAACTACAAGCAG+AGG | - | chr7_2:10372675-10372694 | Msa1048650:intron | 35.0% | |
| !! | TTTTCTTCGATAGGCTAGTT+TGG | + | chr7_2:10372787-10372806 | None:intergenic | 35.0% |
| GTGTTGGAAGAAAGAAAGAA+AGG | - | chr7_2:10373440-10373459 | Msa1048650:intron | 35.0% | |
| !! | ATACTGACTCTTCACAAGAA+TGG | + | chr7_2:10373639-10373658 | None:intergenic | 35.0% |
| ATGTCTTGTGCTTAGAAACA+TGG | + | chr7_2:10373734-10373753 | None:intergenic | 35.0% | |
| ACCATGTTGAAATTGACACA+TGG | - | chr7_2:10373797-10373816 | Msa1048650:CDS | 35.0% | |
| TCCATGTGTCAATTTCAACA+TGG | + | chr7_2:10373801-10373820 | None:intergenic | 35.0% | |
| TTCATATGTTGATCTCGTGT+TGG | + | chr7_2:10374016-10374035 | None:intergenic | 35.0% | |
| ATGCCTAATGAAAGAAACTG+AGG | - | chr7_2:10374280-10374299 | Msa1048650:intron | 35.0% | |
| TGCCTAATGAAAGAAACTGA+GGG | - | chr7_2:10374281-10374300 | Msa1048650:intron | 35.0% | |
| AACCCTCAGTTTCTTTCATT+AGG | + | chr7_2:10374286-10374305 | None:intergenic | 35.0% | |
| ! | AGTTCTGTTTCTTCACAGAA+TGG | - | chr7_2:10374374-10374393 | Msa1048650:intron | 35.0% |
| !! | AAGTTGGTAGAAGGCTAATT+AGG | + | chr7_2:10374406-10374425 | None:intergenic | 35.0% |
| !! | GGTTTAATGAAGTTGGTAGA+AGG | + | chr7_2:10374415-10374434 | None:intergenic | 35.0% |
| GTAGTTGGGGTATATTGTTA+GGG | + | chr7_2:10374436-10374455 | None:intergenic | 35.0% | |
| AGTAGTTGGGGTATATTGTT+AGG | + | chr7_2:10374437-10374456 | None:intergenic | 35.0% | |
| GATGTGAATTGAAGTAGTTG+GGG | + | chr7_2:10374449-10374468 | None:intergenic | 35.0% | |
| ! | AAGTTTTCATCTTGGAGATC+TGG | + | chr7_2:10374476-10374495 | None:intergenic | 35.0% |
| !! | TGTTGGTGAAGTTTTCATCT+TGG | + | chr7_2:10374484-10374503 | None:intergenic | 35.0% |
| AAATGATGCATCTATGTCCA+AGG | + | chr7_2:10374542-10374561 | None:intergenic | 35.0% | |
| ACATGAAACTATGAGGTGGT+GGG | + | chr7_2:10371775-10371794 | None:intergenic | 40.0% | |
| AACATGAAACTATGAGGTGG+TGG | + | chr7_2:10371776-10371795 | None:intergenic | 40.0% | |
| ! | AGTGTTGAGGTGGAAAAGAA+GGG | + | chr7_2:10371841-10371860 | None:intergenic | 40.0% |
| !! | AAGTGTTGAGGTGGAAAAGA+AGG | + | chr7_2:10371842-10371861 | None:intergenic | 40.0% |
| !! | TGACCTTGTTGAAAGTGTTG+AGG | + | chr7_2:10371854-10371873 | None:intergenic | 40.0% |
| AACCGATGCGATTGTAATTG+TGG | - | chr7_2:10371993-10372012 | Msa1048650:CDS | 40.0% | |
| TAATTGTGGTTGTGATACGG+TGG | + | chr7_2:10372126-10372145 | None:intergenic | 40.0% | |
| GACCAATGCGGTTATAATTG+TGG | + | chr7_2:10372140-10372159 | None:intergenic | 40.0% | |
| TGCTACGAACGTTTATGTTG+CGG | + | chr7_2:10372171-10372190 | None:intergenic | 40.0% | |
| !! | TCTGATGATGGATTCCAAAG+TGG | - | chr7_2:10372400-10372419 | Msa1048650:intron | 40.0% |
| ! | GCAAGTTGCACTTTTCTTTC+TGG | + | chr7_2:10372505-10372524 | None:intergenic | 40.0% |
| !! | TGCAACTTGCTAAGGCTTTA+GGG | - | chr7_2:10372515-10372534 | Msa1048650:intron | 40.0% |
| GAAACTACAAGCAGAGGTAA+AGG | - | chr7_2:10372681-10372700 | Msa1048650:intron | 40.0% | |
| ! | GGGAGTAGTGTGCTATTAAT+CGG | - | chr7_2:10373022-10373041 | Msa1048650:intron | 40.0% |
| GCAATTCATAAAGGGGAACA+TGG | - | chr7_2:10373108-10373127 | Msa1048650:intron | 40.0% | |
| ATGTTGTCGTGTTTGTGTGT+CGG | - | chr7_2:10374074-10374093 | Msa1048650:intron | 40.0% | |
| AACTGCAATGCAACACCATT+AGG | + | chr7_2:10374218-10374237 | None:intergenic | 40.0% | |
| ! | AAAAGCAAGGATTGGTGTGA+AGG | - | chr7_2:10374248-10374267 | Msa1048650:intron | 40.0% |
| TGAAAGAAACTGAGGGTTCT+TGG | - | chr7_2:10374288-10374307 | Msa1048650:intron | 40.0% | |
| TTGAGGTGGAAAAGAAGGGA+AGG | + | chr7_2:10371837-10371856 | None:intergenic | 45.0% | |
| !! | CCTTGTTGAAAGTGTTGAGG+TGG | + | chr7_2:10371851-10371870 | None:intergenic | 45.0% |
| CCACCTCAACACTTTCAACA+AGG | - | chr7_2:10371848-10371867 | Msa1048650:CDS | 45.0% | |
| GCTACGAACGTTTATGTTGC+GGG | + | chr7_2:10372170-10372189 | None:intergenic | 45.0% | |
| CATGATCATCACGAAGTGCA+TGG | - | chr7_2:10372364-10372383 | Msa1048650:intron | 45.0% | |
| GCTGAATTTGGATCAAGTGC+AGG | - | chr7_2:10372441-10372460 | Msa1048650:intron | 45.0% | |
| !! | GTGCAACTTGCTAAGGCTTT+AGG | - | chr7_2:10372514-10372533 | Msa1048650:intron | 45.0% |
| ACCTAACGCATCAGTGTGTT+AGG | - | chr7_2:10374113-10374132 | Msa1048650:intron | 45.0% | |
| TTGATGAGCATCAGAACCTC+TGG | - | chr7_2:10374516-10374535 | Msa1048650:CDS | 45.0% | |
| CGCTGCAAACCTTAGTATTG+CGG | - | chr7_2:10374627-10374646 | Msa1048650:five_prime_UTR | 45.0% | |
| !! | TAATAAAGTAAAATAAATAA+GGG | + | chr7_2:10373473-10373492 | None:intergenic | 5.0% |
| GGGTTTGGCACTCACTTTCA+TGG | + | chr7_2:10371615-10371634 | None:intergenic | 50.0% | |
| GCGGGAAAATGTGACCAATG+CGG | + | chr7_2:10372152-10372171 | None:intergenic | 50.0% | |
| CATAAAGGGGAACATGGTCG+AGG | - | chr7_2:10373114-10373133 | Msa1048650:intron | 50.0% | |
| GCCTAACACACTGATGCGTT+AGG | + | chr7_2:10374117-10374136 | None:intergenic | 50.0% | |
| ! | AGCAAGGATTGGTGTGAAGG+TGG | - | chr7_2:10374251-10374270 | Msa1048650:intron | 50.0% |
| ACTGAGGGTTCTTGGAGCAA+TGG | - | chr7_2:10374296-10374315 | Msa1048650:intron | 50.0% | |
| TGGTCGAGGAGCGATTGAAC+TGG | - | chr7_2:10373128-10373147 | Msa1048650:intron | 55.0% | |
| AGCATCAGAACCTCTGGCCT+TGG | - | chr7_2:10374522-10374541 | Msa1048650:CDS | 55.0% | |
| GCATCTATGTCCAAGGCCAG+AGG | + | chr7_2:10374535-10374554 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 10371595 | 10374714 | 10371595 | ID=Msa1048650;Name=Msa1048650 |
| chr7_2 | mRNA | 10371595 | 10374714 | 10371595 | ID=Msa1048650-mRNA-1;Parent=Msa1048650;Name=Msa1048650-mRNA-1;_AED=0.03;_eAED=0.03;_QI=169|1|0.66|1|1|1|3|164|269 |
| chr7_2 | exon | 10371595 | 10372073 | 10371595 | ID=Msa1048650-mRNA-1:exon:2757;Parent=Msa1048650-mRNA-1 |
| chr7_2 | exon | 10373613 | 10374001 | 10373613 | ID=Msa1048650-mRNA-1:exon:2756;Parent=Msa1048650-mRNA-1 |
| chr7_2 | exon | 10374440 | 10374714 | 10374440 | ID=Msa1048650-mRNA-1:exon:2755;Parent=Msa1048650-mRNA-1 |
| chr7_2 | five_prime_UTR | 10374546 | 10374714 | 10374546 | ID=Msa1048650-mRNA-1:five_prime_utr;Parent=Msa1048650-mRNA-1 |
| chr7_2 | CDS | 10374440 | 10374545 | 10374440 | ID=Msa1048650-mRNA-1:cds;Parent=Msa1048650-mRNA-1 |
| chr7_2 | CDS | 10373613 | 10374001 | 10373613 | ID=Msa1048650-mRNA-1:cds;Parent=Msa1048650-mRNA-1 |
| chr7_2 | CDS | 10371759 | 10372073 | 10371759 | ID=Msa1048650-mRNA-1:cds;Parent=Msa1048650-mRNA-1 |
| chr7_2 | three_prime_UTR | 10371595 | 10371758 | 10371595 | ID=Msa1048650-mRNA-1:three_prime_utr;Parent=Msa1048650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
