Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050180 | MCI10680.1 | 85.455 | 55 | 8 | 0 | 1 | 55 | 57 | 111 | 9.60e-25 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050180 | A0A392PGS5 | 85.455 | 55 | 8 | 0 | 1 | 55 | 57 | 111 | 4.59e-25 | 103 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1050180 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050180 | MtrunA17_Chr7g0228531 | 33.333 | 168 | 43 | 4 | 77 | 180 | 269 | 431 | 2.35e-17 | 78.6 |
| Msa1050180 | MtrunA17_Chr7g0228481 | 32.143 | 168 | 45 | 4 | 77 | 180 | 269 | 431 | 2.09e-15 | 73.2 |
| Msa1050180 | MtrunA17_Chr7g0233151 | 56.000 | 50 | 21 | 1 | 82 | 131 | 6 | 54 | 6.74e-13 | 63.5 |
| Msa1050180 | MtrunA17_Chr3g0104491 | 40.299 | 67 | 39 | 1 | 82 | 148 | 22 | 87 | 1.52e-11 | 61.6 |
| Msa1050180 | MtrunA17_Chr7g0228401 | 33.962 | 106 | 38 | 2 | 76 | 150 | 328 | 432 | 8.60e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050180 | AT4G18770.1 | 50.000 | 56 | 27 | 1 | 76 | 131 | 266 | 320 | 2.93e-11 | 61.6 |
| Msa1050180 | AT5G40360.1 | 60.000 | 45 | 17 | 1 | 82 | 126 | 213 | 256 | 5.60e-11 | 60.5 |
Find 33 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTCGTTTAGCAACCTTTA+AGG | 0.177380 | 7_2:-14141387 | None:intergenic |
| CTTCATGTATTGGTTGATTT+TGG | 0.180428 | 7_2:+14145061 | None:intergenic |
| CGTGTTCATTGAGTTGTTCT+TGG | 0.251185 | 7_2:+14141524 | None:intergenic |
| AAAATGTAGTTGAGAATAAT+TGG | 0.251203 | 7_2:-14141629 | Msa1050180:CDS |
| ATCAGGCTCCTCCATTTGAT+TGG | 0.274441 | 7_2:+14145092 | None:intergenic |
| ACTATTGTGGTAAACAATTC+AGG | 0.274625 | 7_2:-14145162 | Msa1050180:CDS |
| GCCCTCTGTTCTTCATGTAT+TGG | 0.307389 | 7_2:+14145051 | None:intergenic |
| TTGAGTTGTTCTTGGCATTC+CGG | 0.325493 | 7_2:+14141532 | None:intergenic |
| TTGTTTACCACAATAGTCTT+TGG | 0.333289 | 7_2:+14145168 | None:intergenic |
| GAAATTGTTAAGAGATTTCC+AGG | 0.336421 | 7_2:-14141603 | Msa1050180:CDS |
| TCAGGCTCCTCCATTTGATT+GGG | 0.390966 | 7_2:+14145093 | None:intergenic |
| TCATCACTAATATTAACATT+TGG | 0.410601 | 7_2:+14141483 | None:intergenic |
| TTCAGAGTGTGATTATGAAA+TGG | 0.434618 | 7_2:-14141457 | Msa1050180:CDS |
| GGAATGCCATTGAGCGTGTC+CGG | 0.456600 | 7_2:-14141551 | Msa1050180:CDS |
| TCACGATCATAATTCATTTG+AGG | 0.467438 | 7_2:+14145129 | None:intergenic |
| CACTAATATTAACATTTGGT+TGG | 0.486948 | 7_2:+14141487 | None:intergenic |
| GCTAACAGAACCCAATCAAA+TGG | 0.489956 | 7_2:-14145103 | Msa1050180:CDS |
| AGAGTTCAGTTAAGAACCAT+TGG | 0.497650 | 7_2:-14141572 | Msa1050180:CDS |
| GGCATTCCGGACACGCTCAA+TGG | 0.510370 | 7_2:+14141545 | None:intergenic |
| CTATTGTGGTAAACAATTCA+GGG | 0.536957 | 7_2:-14145161 | Msa1050180:CDS |
| ACTGAACTCTCAGTACGGCC+TGG | 0.548161 | 7_2:+14141585 | None:intergenic |
| GCTTCTTAGATTGAATGTCG+TGG | 0.559475 | 7_2:+14145190 | None:intergenic |
| ACCAATACATGAAGAACAGA+GGG | 0.602131 | 7_2:-14145052 | Msa1050180:CDS |
| CACGCTCAATGGCATTCCAA+TGG | 0.603862 | 7_2:+14141556 | None:intergenic |
| TAAGAAGCCAAAGACTATTG+TGG | 0.615060 | 7_2:-14145175 | Msa1050180:CDS |
| TCTTAACTGAACTCTCAGTA+CGG | 0.632743 | 7_2:+14141580 | None:intergenic |
| CAAGAACAACTCAATGAACA+CGG | 0.646667 | 7_2:-14141523 | Msa1050180:CDS |
| TATTGTGGTAAACAATTCAG+GGG | 0.655537 | 7_2:-14145160 | Msa1050180:CDS |
| AACAGAACCCAATCAAATGG+AGG | 0.659776 | 7_2:-14145100 | Msa1050180:CDS |
| AACCAATACATGAAGAACAG+AGG | 0.681599 | 7_2:-14145053 | Msa1050180:CDS |
| TATGCTTGCAGGATGAACCA+TGG | 0.685451 | 7_2:-14141689 | Msa1050180:intron |
| GATGGTTCGAAGCAGAGACG+TGG | 0.688717 | 7_2:-14145235 | Msa1050180:CDS |
| ATTGTGGTAAACAATTCAGG+GGG | 0.725019 | 7_2:-14145159 | Msa1050180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGTAAAAATAATTAAAGT+CGG | + | chr7_2:14144156-14144175 | None:intergenic | 10.0% |
| !! | TAAATATATAAATAACTAGA+AGG | + | chr7_2:14144905-14144924 | None:intergenic | 10.0% |
| !! | GCTATTTATAAGAAAAATTA+TGG | + | chr7_2:14143485-14143504 | None:intergenic | 15.0% |
| !! | TAAAAAAGAATTGAAAAGAT+AGG | + | chr7_2:14143906-14143925 | None:intergenic | 15.0% |
| !! | GAATTAGGTTATAAAAATAA+GGG | + | chr7_2:14143967-14143986 | None:intergenic | 15.0% |
| !! | ATAACATCAAATTGATTAAA+TGG | - | chr7_2:14144044-14144063 | Msa1050180:intron | 15.0% |
| !! | TAACATCAAATTGATTAAAT+GGG | - | chr7_2:14144045-14144064 | Msa1050180:intron | 15.0% |
| !!! | GAATATATCATTTTTTTATG+TGG | - | chr7_2:14144240-14144259 | Msa1050180:intron | 15.0% |
| !! | AAAAAATATATATAAACGTC+CGG | - | chr7_2:14144299-14144318 | Msa1050180:intron | 15.0% |
| !!! | AATCTTTATTTTTTTCAAGA+AGG | + | chr7_2:14144334-14144353 | None:intergenic | 15.0% |
| !! | AATAACTATAGATAAAACTT+AGG | + | chr7_2:14144748-14144767 | None:intergenic | 15.0% |
| !! | AACATACAACAAAAATATGA+TGG | + | chr7_2:14142305-14142324 | None:intergenic | 20.0% |
| !!! | TTTTTCTTATAAATAGCACA+CGG | - | chr7_2:14143488-14143507 | Msa1050180:intron | 20.0% |
| !! | TATTCCCATTATTATTATAG+TGG | - | chr7_2:14143719-14143738 | Msa1050180:intron | 20.0% |
| !! | ATCTCCACTATAATAATAAT+GGG | + | chr7_2:14143726-14143745 | None:intergenic | 20.0% |
| !! | AATCTCCACTATAATAATAA+TGG | + | chr7_2:14143727-14143746 | None:intergenic | 20.0% |
| !! | GGAATTAGGTTATAAAAATA+AGG | + | chr7_2:14143968-14143987 | None:intergenic | 20.0% |
| !! | AAGATAAACGTTTCAATAAT+GGG | - | chr7_2:14144015-14144034 | Msa1050180:intron | 20.0% |
| !!! | TTTTTTATGTGGATTTTATG+TGG | - | chr7_2:14144251-14144270 | Msa1050180:intron | 20.0% |
| !!! | TTTTTATGTGGATTTTATGT+GGG | - | chr7_2:14144252-14144271 | Msa1050180:intron | 20.0% |
| !!! | CAAAGAGACTTTTAAAAAAA+CGG | + | chr7_2:14144484-14144503 | None:intergenic | 20.0% |
| !! | AAAAATAACATATCTATCGT+AGG | + | chr7_2:14144694-14144713 | None:intergenic | 20.0% |
| !! | AAAATGTAGTTGAGAATAAT+TGG | - | chr7_2:14144994-14145013 | Msa1050180:intron | 20.0% |
| !! | TCATCACTAATATTAACATT+TGG | + | chr7_2:14145143-14145162 | None:intergenic | 20.0% |
| ! | TGAATATGTAAATTTCACTG+AGG | - | chr7_2:14141697-14141716 | Msa1050180:intron | 25.0% |
| !!! | TTTTGAAGAAATATTCTCAC+CGG | - | chr7_2:14141967-14141986 | Msa1050180:intron | 25.0% |
| ! | TTTGTGAAGAACTATGAAAA+TGG | - | chr7_2:14142274-14142293 | Msa1050180:intron | 25.0% |
| ! | TGCAAAAGTAATCAAATATC+CGG | + | chr7_2:14142881-14142900 | None:intergenic | 25.0% |
| !!! | GATATTTGATTACTTTTGCA+GGG | - | chr7_2:14142881-14142900 | Msa1050180:intron | 25.0% |
| !!! | ATATTTGATTACTTTTGCAG+GGG | - | chr7_2:14142882-14142901 | Msa1050180:intron | 25.0% |
| ! | AAAATTCATACCAATGACAA+TGG | - | chr7_2:14143183-14143202 | Msa1050180:intron | 25.0% |
| !!! | AACTATCCTTTGATTAGTTT+GGG | + | chr7_2:14143284-14143303 | None:intergenic | 25.0% |
| !! | AAACTATCCTTTGATTAGTT+TGG | + | chr7_2:14143285-14143304 | None:intergenic | 25.0% |
| !! | TATTATAGTGGAGATTTAAG+AGG | - | chr7_2:14143731-14143750 | Msa1050180:intron | 25.0% |
| ! | GAAGATAAACGTTTCAATAA+TGG | - | chr7_2:14144014-14144033 | Msa1050180:intron | 25.0% |
| ! | AGATAAACGTTTCAATAATG+GGG | - | chr7_2:14144016-14144035 | Msa1050180:intron | 25.0% |
| !!! | TTCAATTTGCAGTTTTAGTT+GGG | - | chr7_2:14144121-14144140 | Msa1050180:intron | 25.0% |
| ! | TATAATAGCCCAAATTCAAT+TGG | - | chr7_2:14144178-14144197 | Msa1050180:intron | 25.0% |
| ! | TACTACATTAGCATTATTCA+AGG | - | chr7_2:14144276-14144295 | Msa1050180:intron | 25.0% |
| ! | TCTAATCTTCTTCTTAAATG+CGG | - | chr7_2:14144390-14144409 | Msa1050180:intron | 25.0% |
| !! | ATTCAATTTTCTATCGACAT+TGG | - | chr7_2:14144430-14144449 | Msa1050180:intron | 25.0% |
| ! | TCTTTGAATTTAGCTAATGT+AGG | - | chr7_2:14144498-14144517 | Msa1050180:intron | 25.0% |
| ! | CACTAATATTAACATTTGGT+TGG | + | chr7_2:14145139-14145158 | None:intergenic | 25.0% |
| TTGTTTACCACAATAGTCTT+TGG | + | chr7_2:14141458-14141477 | None:intergenic | 30.0% | |
| ACTATTGTGGTAAACAATTC+AGG | - | chr7_2:14141461-14141480 | Msa1050180:CDS | 30.0% | |
| CTATTGTGGTAAACAATTCA+GGG | - | chr7_2:14141462-14141481 | Msa1050180:CDS | 30.0% | |
| TATTGTGGTAAACAATTCAG+GGG | - | chr7_2:14141463-14141482 | Msa1050180:CDS | 30.0% | |
| TCACGATCATAATTCATTTG+AGG | + | chr7_2:14141497-14141516 | None:intergenic | 30.0% | |
| !!! | CTTCATGTATTGGTTGATTT+TGG | + | chr7_2:14141565-14141584 | None:intergenic | 30.0% |
| TATGTAAATTTCACTGAGGA+AGG | - | chr7_2:14141701-14141720 | Msa1050180:intron | 30.0% | |
| AGACAACCAATAAGGAAAAA+TGG | - | chr7_2:14141753-14141772 | Msa1050180:intron | 30.0% | |
| TAAAATTACCAGATGGAAAG+AGG | - | chr7_2:14141834-14141853 | Msa1050180:intron | 30.0% | |
| AAAATTACCAGATGGAAAGA+GGG | - | chr7_2:14141835-14141854 | Msa1050180:intron | 30.0% | |
| GTTAAAACAGCATTCTTACA+TGG | - | chr7_2:14142064-14142083 | Msa1050180:intron | 30.0% | |
| !! | ATCTTTTGCTATGAAGGATT+TGG | - | chr7_2:14142390-14142409 | Msa1050180:intron | 30.0% |
| !! | TCTTTTGCTATGAAGGATTT+GGG | - | chr7_2:14142391-14142410 | Msa1050180:intron | 30.0% |
| ATCTCAAGAAAGTTCTTGAA+AGG | - | chr7_2:14142491-14142510 | Msa1050180:intron | 30.0% | |
| ! | TTTTCTTGAATCTACATCTC+CGG | + | chr7_2:14142851-14142870 | None:intergenic | 30.0% |
| !! | GGATATTTGATTACTTTTGC+AGG | - | chr7_2:14142880-14142899 | Msa1050180:intron | 30.0% |
| !! | TATTTGATTACTTTTGCAGG+GGG | - | chr7_2:14142883-14142902 | Msa1050180:intron | 30.0% |
| GAACATAACTTTCTTGATTC+TGG | + | chr7_2:14143035-14143054 | None:intergenic | 30.0% | |
| ! | CAAAACTCTATCTTCTCTTT+TGG | + | chr7_2:14143234-14143253 | None:intergenic | 30.0% |
| !! | ACTATCCTTTGATTAGTTTG+GGG | + | chr7_2:14143283-14143302 | None:intergenic | 30.0% |
| TAGATACAACTCTCACAAAT+TGG | + | chr7_2:14143655-14143674 | None:intergenic | 30.0% | |
| ATGTGAGTAAGTAAAAACCA+CGG | + | chr7_2:14143767-14143786 | None:intergenic | 30.0% | |
| TTTACTTACTCACATTGAGA+AGG | - | chr7_2:14143772-14143791 | Msa1050180:intron | 30.0% | |
| !! | ACATGCAAAAGCATTATATG+TGG | + | chr7_2:14143934-14143953 | None:intergenic | 30.0% |
| !! | CTTCAATTTGCAGTTTTAGT+TGG | - | chr7_2:14144120-14144139 | Msa1050180:intron | 30.0% |
| GGAACTATCCAATTGAATTT+GGG | + | chr7_2:14144189-14144208 | None:intergenic | 30.0% | |
| TGGAACTATCCAATTGAATT+TGG | + | chr7_2:14144190-14144209 | None:intergenic | 30.0% | |
| CATATCTATCGTAGGATTTA+AGG | + | chr7_2:14144686-14144705 | None:intergenic | 30.0% | |
| GTACATATATGTTGCATCTT+AGG | + | chr7_2:14144726-14144745 | None:intergenic | 30.0% | |
| AGCGTTCAAAATTAACAAGA+AGG | + | chr7_2:14144848-14144867 | None:intergenic | 30.0% | |
| ! | TATTTCTTTTGTATGCTTGC+AGG | - | chr7_2:14144923-14144942 | Msa1050180:intron | 30.0% |
| !!! | GTTTCTTCTTTTTTACTCCA+TGG | + | chr7_2:14144954-14144973 | None:intergenic | 30.0% |
| GAAATTGTTAAGAGATTTCC+AGG | - | chr7_2:14145020-14145039 | Msa1050180:intron | 30.0% | |
| TTCAGAGTGTGATTATGAAA+TGG | - | chr7_2:14145166-14145185 | Msa1050180:CDS | 30.0% | |
| TAAGAAGCCAAAGACTATTG+TGG | - | chr7_2:14141448-14141467 | Msa1050180:CDS | 35.0% | |
| ATTGTGGTAAACAATTCAGG+GGG | - | chr7_2:14141464-14141483 | Msa1050180:CDS | 35.0% | |
| !! | TGATTTTGGTCTATCTGATC+AGG | + | chr7_2:14141551-14141570 | None:intergenic | 35.0% |
| AACCAATACATGAAGAACAG+AGG | - | chr7_2:14141570-14141589 | Msa1050180:CDS | 35.0% | |
| ACCAATACATGAAGAACAGA+GGG | - | chr7_2:14141571-14141590 | Msa1050180:CDS | 35.0% | |
| ! | TGATGATGATGATGTTGAGA+TGG | - | chr7_2:14141610-14141629 | Msa1050180:CDS | 35.0% |
| ! | GATGATGATGATGTTGAGAT+GGG | - | chr7_2:14141611-14141630 | Msa1050180:CDS | 35.0% |
| !!! | CCTGAGAAGTATCTTTTTGA+TGG | + | chr7_2:14141677-14141696 | None:intergenic | 35.0% |
| CCATCAAAAAGATACTTCTC+AGG | - | chr7_2:14141674-14141693 | Msa1050180:CDS | 35.0% | |
| ! | TTCCTTATTGGTTGTCTCTA+TGG | + | chr7_2:14141750-14141769 | None:intergenic | 35.0% |
| CCAATAAGGAAAAATGGTTG+CGG | - | chr7_2:14141759-14141778 | Msa1050180:intron | 35.0% | |
| ! | TTCCATCTGGTAATTTTACC+AGG | + | chr7_2:14141832-14141851 | None:intergenic | 35.0% |
| !! | AGAGGGCATTGAAAAATAAG+TGG | - | chr7_2:14141852-14141871 | Msa1050180:intron | 35.0% |
| !! | GAGGGCATTGAAAAATAAGT+GGG | - | chr7_2:14141853-14141872 | Msa1050180:intron | 35.0% |
| ! | AATCAACGCCTTTCTTTTGA+TGG | + | chr7_2:14141949-14141968 | None:intergenic | 35.0% |
| CCATATAGATTTCTTCCTCT+AGG | + | chr7_2:14142093-14142112 | None:intergenic | 35.0% | |
| CCTAGAGGAAGAAATCTATA+TGG | - | chr7_2:14142090-14142109 | Msa1050180:intron | 35.0% | |
| CGCTTGAAGAAAAGTCTATA+CGG | - | chr7_2:14142160-14142179 | Msa1050180:intron | 35.0% | |
| AACTTCTTGTACCATTGTCT+TGG | + | chr7_2:14142199-14142218 | None:intergenic | 35.0% | |
| !! | GTTGATGATATGCTTATCGT+TGG | - | chr7_2:14142322-14142341 | Msa1050180:intron | 35.0% |
| GCTTATCGTTGGAAAAGATA+AGG | - | chr7_2:14142333-14142352 | Msa1050180:intron | 35.0% | |
| !! | GAGCAAATCTTTTGCTATGA+AGG | - | chr7_2:14142384-14142403 | Msa1050180:intron | 35.0% |
| ATCGTTCAAAAAGAATGCTG+TGG | - | chr7_2:14142452-14142471 | Msa1050180:intron | 35.0% | |
| TTACTGAGTTTCATATGACC+AGG | + | chr7_2:14142556-14142575 | None:intergenic | 35.0% | |
| ! | TGGATACTGAGGTATCTAAA+AGG | - | chr7_2:14142754-14142773 | Msa1050180:intron | 35.0% |
| TGGTTATGTAGATGCTGATA+TGG | - | chr7_2:14142825-14142844 | Msa1050180:intron | 35.0% | |
| GATTCAAGAAAATCCACATC+CGG | - | chr7_2:14142859-14142878 | Msa1050180:intron | 35.0% | |
| AGTAATCAAATATCCGGATG+TGG | + | chr7_2:14142875-14142894 | None:intergenic | 35.0% | |
| ATCAAAGGATAGTTTCCCTT+TGG | - | chr7_2:14143290-14143309 | Msa1050180:intron | 35.0% | |
| ! | TTTTCTCTCACACTCTTATG+AGG | + | chr7_2:14143622-14143641 | None:intergenic | 35.0% |
| TGTGAGTAAGTAAAAACCAC+GGG | + | chr7_2:14143766-14143785 | None:intergenic | 35.0% | |
| ACTCAAAATAGGCACTTTAG+CGG | + | chr7_2:14143838-14143857 | None:intergenic | 35.0% | |
| !!! | AAGTGCCTATTTTGAGTTCA+CGG | - | chr7_2:14143841-14143860 | Msa1050180:intron | 35.0% |
| GAGAGGACAAAATTGGAATT+AGG | + | chr7_2:14143982-14144001 | None:intergenic | 35.0% | |
| TGGATAGTTCCAAATCAAAC+AGG | - | chr7_2:14144198-14144217 | Msa1050180:intron | 35.0% | |
| GGATAGTTCCAAATCAAACA+GGG | - | chr7_2:14144199-14144218 | Msa1050180:intron | 35.0% | |
| GTAACTTTCCCTGTTTGATT+TGG | + | chr7_2:14144210-14144229 | None:intergenic | 35.0% | |
| ! | TTCAAGAAGGCATAACATTC+CGG | + | chr7_2:14144321-14144340 | None:intergenic | 35.0% |
| TCTTAACTGAACTCTCAGTA+CGG | + | chr7_2:14145046-14145065 | None:intergenic | 35.0% | |
| AGAGTTCAGTTAAGAACCAT+TGG | - | chr7_2:14145051-14145070 | Msa1050180:CDS | 35.0% | |
| CAAGAACAACTCAATGAACA+CGG | - | chr7_2:14145100-14145119 | Msa1050180:CDS | 35.0% | |
| !!! | TGAAATGGAGTTTTTTCCTG+AGG | - | chr7_2:14145181-14145200 | Msa1050180:CDS | 35.0% |
| GCTTCTTAGATTGAATGTCG+TGG | + | chr7_2:14141436-14141455 | None:intergenic | 40.0% | |
| GCTAACAGAACCCAATCAAA+TGG | - | chr7_2:14141520-14141539 | Msa1050180:CDS | 40.0% | |
| AACAGAACCCAATCAAATGG+AGG | - | chr7_2:14141523-14141542 | Msa1050180:CDS | 40.0% | |
| CTGTCTGATCTTCTCAATTG+AGG | + | chr7_2:14141644-14141663 | None:intergenic | 40.0% | |
| AGCCATAGAGACAACCAATA+AGG | - | chr7_2:14141745-14141764 | Msa1050180:intron | 40.0% | |
| !! | CCGCAACCATTTTTCCTTAT+TGG | + | chr7_2:14141762-14141781 | None:intergenic | 40.0% |
| AGATTGCATCTCTTCTTCCA+TGG | + | chr7_2:14141786-14141805 | None:intergenic | 40.0% | |
| AGAAGAGATGCAATCTCTGA+AGG | - | chr7_2:14141790-14141809 | Msa1050180:intron | 40.0% | |
| GACCTGGTAAAATTACCAGA+TGG | - | chr7_2:14141827-14141846 | Msa1050180:intron | 40.0% | |
| ACAATTCGTGCTTTGTACCT+GGG | + | chr7_2:14141914-14141933 | None:intergenic | 40.0% | |
| AAAGCACGAATTGTCGTGAA+GGG | - | chr7_2:14141920-14141939 | Msa1050180:intron | 40.0% | |
| TGAAGAAATATTCTCACCGG+TGG | - | chr7_2:14141970-14141989 | Msa1050180:intron | 40.0% | |
| ACATCCATTAGAGCAATCCT+TGG | - | chr7_2:14142001-14142020 | Msa1050180:intron | 40.0% | |
| TAGACCAAGGATTGCTCTAA+TGG | + | chr7_2:14142008-14142027 | None:intergenic | 40.0% | |
| ATTCTTACATGGAGACCTAG+AGG | - | chr7_2:14142075-14142094 | Msa1050180:intron | 40.0% | |
| ATCTATATGGAGCAACCTGA+AGG | - | chr7_2:14142103-14142122 | Msa1050180:intron | 40.0% | |
| ! | TTTTCTTCAAGCGACACACA+AGG | + | chr7_2:14142153-14142172 | None:intergenic | 40.0% |
| AAGTCTATACGGCTTAAAGC+AGG | - | chr7_2:14142171-14142190 | Msa1050180:intron | 40.0% | |
| CGTCTTTGTGAAGTTGTGTT+GGG | + | chr7_2:14142236-14142255 | None:intergenic | 40.0% | |
| ACGTCTTTGTGAAGTTGTGT+TGG | + | chr7_2:14142237-14142256 | None:intergenic | 40.0% | |
| AGTTCTTCACAAACACGCAA+TGG | + | chr7_2:14142267-14142286 | None:intergenic | 40.0% | |
| AGTTTCATATGACCAGGTAG+CGG | + | chr7_2:14142550-14142569 | None:intergenic | 40.0% | |
| TCTTTCTCTTGGTCATTCTC+AGG | + | chr7_2:14142589-14142608 | None:intergenic | 40.0% | |
| TGCTCATCTCTTCTTTCTCT+TGG | + | chr7_2:14142600-14142619 | None:intergenic | 40.0% | |
| AGAGAAAGAAGAGATGAGCA+AGG | - | chr7_2:14142600-14142619 | Msa1050180:intron | 40.0% | |
| AGTAGATTCCTATCAAACCC+AGG | - | chr7_2:14142706-14142725 | Msa1050180:intron | 40.0% | |
| ! | GTTCTTTTCCTGGGTTTGAT+AGG | + | chr7_2:14142717-14142736 | None:intergenic | 40.0% |
| !!! | GCCAAAGAGTGCTTATGTTT+TGG | - | chr7_2:14142781-14142800 | Msa1050180:intron | 40.0% |
| GCCAAAACATAAGCACTCTT+TGG | + | chr7_2:14142785-14142804 | None:intergenic | 40.0% | |
| !!! | GAGTGCTTATGTTTTGGCAA+TGG | - | chr7_2:14142787-14142806 | Msa1050180:intron | 40.0% |
| AATGGAAATCAAATGCTCGC+TGG | - | chr7_2:14142805-14142824 | Msa1050180:intron | 40.0% | |
| TATGTAGATGCTGATATGGC+CGG | - | chr7_2:14142829-14142848 | Msa1050180:intron | 40.0% | |
| AAGAAGTTCCTGCAAGAGTT+AGG | - | chr7_2:14143009-14143028 | Msa1050180:intron | 40.0% | |
| AGAACTCGACATACCATTCA+AGG | - | chr7_2:14143091-14143110 | Msa1050180:intron | 40.0% | |
| CATATCTGCTCCATTGTCAT+TGG | + | chr7_2:14143196-14143215 | None:intergenic | 40.0% | |
| TTGTAAAGAAGCTGCAAGCT+TGG | - | chr7_2:14143251-14143270 | Msa1050180:intron | 40.0% | |
| AGCAACCCCAAACTAATCAA+AGG | - | chr7_2:14143275-14143294 | Msa1050180:intron | 40.0% | |
| GCATCACTATGCACTACTAT+TGG | + | chr7_2:14143343-14143362 | None:intergenic | 40.0% | |
| TTCTCTCAACTCTATGAGTG+AGG | + | chr7_2:14143585-14143604 | None:intergenic | 40.0% | |
| TACATAGTTATGTCCACCTG+AGG | - | chr7_2:14143685-14143704 | Msa1050180:intron | 40.0% | |
| ACATAGTTATGTCCACCTGA+GGG | - | chr7_2:14143686-14143705 | Msa1050180:intron | 40.0% | |
| GAATACAAATCTTCACCCTC+AGG | + | chr7_2:14143704-14143723 | None:intergenic | 40.0% | |
| !!! | CACACAACAAGTTTTTAGCG+TGG | + | chr7_2:14143802-14143821 | None:intergenic | 40.0% |
| !!! | TATTTTGAGTTCACGGAGGA+GGG | - | chr7_2:14143848-14143867 | Msa1050180:intron | 40.0% |
| AAGATAGGCACCTTAGTGTT+GGG | + | chr7_2:14143891-14143910 | None:intergenic | 40.0% | |
| AAAGATAGGCACCTTAGTGT+TGG | + | chr7_2:14143892-14143911 | None:intergenic | 40.0% | |
| TGTGAGTGAGAGGACAAAAT+TGG | + | chr7_2:14143989-14144008 | None:intergenic | 40.0% | |
| TCTTCATTCTTGTGAGTGAG+AGG | + | chr7_2:14143999-14144018 | None:intergenic | 40.0% | |
| ATATTAGCACATAAGACCCG+TGG | - | chr7_2:14144623-14144642 | Msa1050180:intron | 40.0% | |
| TATTAGCACATAAGACCCGT+GGG | - | chr7_2:14144624-14144643 | Msa1050180:intron | 40.0% | |
| TTGAACGCTTGAATCACACA+CGG | - | chr7_2:14144859-14144878 | Msa1050180:intron | 40.0% | |
| ! | TTGAGTTGTTCTTGGCATTC+CGG | + | chr7_2:14145094-14145113 | None:intergenic | 40.0% |
| ! | CGTGTTCATTGAGTTGTTCT+TGG | + | chr7_2:14145102-14145121 | None:intergenic | 40.0% |
| TCAGGCTCCTCCATTTGATT+GGG | + | chr7_2:14141533-14141552 | None:intergenic | 45.0% | |
| ATCAGGCTCCTCCATTTGAT+TGG | + | chr7_2:14141534-14141553 | None:intergenic | 45.0% | |
| GCCCTCTGTTCTTCATGTAT+TGG | + | chr7_2:14141575-14141594 | None:intergenic | 45.0% | |
| AGGAGAACCTCAAAGCTTCA+TGG | - | chr7_2:14141721-14141740 | Msa1050180:intron | 45.0% | |
| ATGGCTTCCATGAAGCTTTG+AGG | + | chr7_2:14141731-14141750 | None:intergenic | 45.0% | |
| TTCAATGCCCTCTTTCCATC+TGG | + | chr7_2:14141845-14141864 | None:intergenic | 45.0% | |
| CAATTCGTGCTTTGTACCTG+GGG | + | chr7_2:14141913-14141932 | None:intergenic | 45.0% | |
| GACAATTCGTGCTTTGTACC+TGG | + | chr7_2:14141915-14141934 | None:intergenic | 45.0% | |
| CAAAGCACGAATTGTCGTGA+AGG | - | chr7_2:14141919-14141938 | Msa1050180:intron | 45.0% | |
| AAGCACGAATTGTCGTGAAG+GGG | - | chr7_2:14141921-14141940 | Msa1050180:intron | 45.0% | |
| !! | AAGGGGTGCCATCAAAAGAA+AGG | - | chr7_2:14141938-14141957 | Msa1050180:intron | 45.0% |
| ATGGATGTCATCTTCACCAC+CGG | + | chr7_2:14141989-14142008 | None:intergenic | 45.0% | |
| CTAGTTTAGCAGCTAGACCA+AGG | + | chr7_2:14142021-14142040 | None:intergenic | 45.0% | |
| TAAAGCAGGCTCCAAGACAA+TGG | - | chr7_2:14142185-14142204 | Msa1050180:intron | 45.0% | |
| GGTGCAGTGAAGAAGATTCT+TGG | - | chr7_2:14142412-14142431 | Msa1050180:intron | 45.0% | |
| CTACCCACTGCTGAAGAATA+GGG | + | chr7_2:14142628-14142647 | None:intergenic | 45.0% | |
| CAAACCCAGGAAAAGAACAC+TGG | - | chr7_2:14142719-14142738 | Msa1050180:intron | 45.0% | |
| ! | CACTCCAGTGTTCTTTTCCT+GGG | + | chr7_2:14142726-14142745 | None:intergenic | 45.0% |
| !! | AACACTGGAGTGCTGTGAAA+TGG | - | chr7_2:14142734-14142753 | Msa1050180:intron | 45.0% |
| GTGCTGTGAAATGGATACTG+AGG | - | chr7_2:14142743-14142762 | Msa1050180:intron | 45.0% | |
| GAGTACATCGCAATCACTGA+AGG | - | chr7_2:14142964-14142983 | Msa1050180:intron | 45.0% | |
| CGCAATCACTGAAGGTTGTA+AGG | - | chr7_2:14142972-14142991 | Msa1050180:intron | 45.0% | |
| AAGGTTGTAAGGAGATCCTG+TGG | - | chr7_2:14142983-14143002 | Msa1050180:intron | 45.0% | |
| TGCTGAGGTGAATTGCACTT+TGG | + | chr7_2:14143071-14143090 | None:intergenic | 45.0% | |
| CGATGTGTTTCGACCTTGAA+TGG | + | chr7_2:14143107-14143126 | None:intergenic | 45.0% | |
| ! | ACATCGATGTGAGGTATCAC+TGG | - | chr7_2:14143121-14143140 | Msa1050180:intron | 45.0% |
| TCACTGGATACGTGATGTGT+TGG | - | chr7_2:14143137-14143156 | Msa1050180:intron | 45.0% | |
| AAGGATAGTTTCCCTTTGGC+TGG | - | chr7_2:14143294-14143313 | Msa1050180:intron | 45.0% | |
| ATAGTTTCCCTTTGGCTGGA+GGG | - | chr7_2:14143298-14143317 | Msa1050180:intron | 45.0% | |
| CACTATGCACTACTATTGGC+TGG | + | chr7_2:14143339-14143358 | None:intergenic | 45.0% | |
| GAATTCTTGCCACGTGAAGA+AGG | - | chr7_2:14143376-14143395 | Msa1050180:intron | 45.0% | |
| TTGCTTCTTCCTTCTTCACG+TGG | + | chr7_2:14143388-14143407 | None:intergenic | 45.0% | |
| AAATAGCACACGGTAGTGCA+AGG | - | chr7_2:14143498-14143517 | Msa1050180:intron | 45.0% | |
| TCTCAACACTCTGCGTGTTA+AGG | + | chr7_2:14143548-14143567 | None:intergenic | 45.0% | |
| TACAAATCTTCACCCTCAGG+TGG | + | chr7_2:14143701-14143720 | None:intergenic | 45.0% | |
| GTGGAGATTTAAGAGGCCTA+CGG | - | chr7_2:14143738-14143757 | Msa1050180:intron | 45.0% | |
| TGGAGATTTAAGAGGCCTAC+GGG | - | chr7_2:14143739-14143758 | Msa1050180:intron | 45.0% | |
| !!! | TGCCTATTTTGAGTTCACGG+AGG | - | chr7_2:14143844-14143863 | Msa1050180:intron | 45.0% |
| CTCCTCCGTGAACTCAAAAT+AGG | + | chr7_2:14143849-14143868 | None:intergenic | 45.0% | |
| !!! | CTATTTTGAGTTCACGGAGG+AGG | - | chr7_2:14143847-14143866 | Msa1050180:intron | 45.0% |
| TGCATACCTTCGATGTACAG+TGG | - | chr7_2:14144366-14144385 | Msa1050180:intron | 45.0% | |
| TTAGAGCCACTGTACATCGA+AGG | + | chr7_2:14144375-14144394 | None:intergenic | 45.0% | |
| TATGCTTGCAGGATGAACCA+TGG | - | chr7_2:14144934-14144953 | Msa1050180:intron | 45.0% | |
| ! | TCCTGAGGTTTTTATGCAGC+AGG | - | chr7_2:14145196-14145215 | Msa1050180:CDS | 45.0% |
| TCCTGCTGCATAAAAACCTC+AGG | + | chr7_2:14145200-14145219 | None:intergenic | 45.0% | |
| GGAAAAATGGTTGCGGTCCA+TGG | - | chr7_2:14141766-14141785 | Msa1050180:intron | 50.0% | |
| GGAGAATGAGACGTATGACC+TGG | - | chr7_2:14141811-14141830 | Msa1050180:intron | 50.0% | |
| AAGAGAACAACCCAAACCCC+AGG | - | chr7_2:14141894-14141913 | Msa1050180:intron | 50.0% | |
| GTGCTTTGTACCTGGGGTTT+GGG | + | chr7_2:14141907-14141926 | None:intergenic | 50.0% | |
| CCTGGTTCAACGAAACCTTC+AGG | + | chr7_2:14142121-14142140 | None:intergenic | 50.0% | |
| CCTGAAGGTTTCGTTGAACC+AGG | - | chr7_2:14142118-14142137 | Msa1050180:intron | 50.0% | |
| ! | CACACAAGGTGTTCTTTGCC+TGG | + | chr7_2:14142139-14142158 | None:intergenic | 50.0% |
| GTGCCCTATTCTTCAGCAGT+GGG | - | chr7_2:14142622-14142641 | Msa1050180:intron | 50.0% | |
| GCTACCCACTGCTGAAGAAT+AGG | + | chr7_2:14142629-14142648 | None:intergenic | 50.0% | |
| TGCAGACCATGGCGTACATA+AGG | + | chr7_2:14142651-14142670 | None:intergenic | 50.0% | |
| CCTACAGCATAACCGATGTC+TGG | + | chr7_2:14142679-14142698 | None:intergenic | 50.0% | |
| ! | CCAGACATCGGTTATGCTGT+AGG | - | chr7_2:14142676-14142695 | Msa1050180:intron | 50.0% |
| ! | GCACTCCAGTGTTCTTTTCC+TGG | + | chr7_2:14142727-14142746 | None:intergenic | 50.0% |
| TGCGATGTACTCTGCTTCTG+TGG | + | chr7_2:14142956-14142975 | None:intergenic | 50.0% | |
| GCAGGAACTTCTTCATCCAC+AGG | + | chr7_2:14143002-14143021 | None:intergenic | 50.0% | |
| GATTCTGGCCTAACTCTTGC+AGG | + | chr7_2:14143020-14143039 | None:intergenic | 50.0% | |
| GGTATGTCGAGTTCTTGCTG+AGG | + | chr7_2:14143086-14143105 | None:intergenic | 50.0% | |
| GGTCGAAACACATCGATGTG+AGG | - | chr7_2:14143112-14143131 | Msa1050180:intron | 50.0% | |
| GATAGTTTCCCTTTGGCTGG+AGG | - | chr7_2:14143297-14143316 | Msa1050180:intron | 50.0% | |
| TAGTTTCCCTTTGGCTGGAG+GGG | - | chr7_2:14143299-14143318 | Msa1050180:intron | 50.0% | |
| ACGGAGGAGGGAAATTATGC+AGG | - | chr7_2:14143860-14143879 | Msa1050180:intron | 50.0% | |
| GCAGGCATTTCCCAACACTA+AGG | - | chr7_2:14143878-14143897 | Msa1050180:intron | 50.0% | |
| AAAACTAGACTGCCGACCCA+CGG | + | chr7_2:14144643-14144662 | None:intergenic | 50.0% | |
| CACGCTCAATGGCATTCCAA+TGG | + | chr7_2:14145070-14145089 | None:intergenic | 50.0% | |
| CGTGCTTTGTACCTGGGGTT+TGG | + | chr7_2:14141908-14141927 | None:intergenic | 55.0% | |
| GGTGCCCTATTCTTCAGCAG+TGG | - | chr7_2:14142621-14142640 | Msa1050180:intron | 55.0% | |
| !! | GGGTAGCCTTATGTACGCCA+TGG | - | chr7_2:14142642-14142661 | Msa1050180:intron | 55.0% |
| AGTTTCCCTTTGGCTGGAGG+GGG | - | chr7_2:14143300-14143319 | Msa1050180:intron | 55.0% | |
| ATTCTCCCCCTCCAGCCAAA+GGG | + | chr7_2:14143308-14143327 | None:intergenic | 55.0% | |
| AATTCTCCCCCTCCAGCCAA+AGG | + | chr7_2:14143309-14143328 | None:intergenic | 55.0% | |
| GCTGGAGGGGGAGAATTGTA+GGG | - | chr7_2:14143312-14143331 | Msa1050180:intron | 55.0% | |
| GTAAAAACCACGGGACCCGT+AGG | + | chr7_2:14143757-14143776 | None:intergenic | 55.0% | |
| AGCACATAAGACCCGTGGGT+CGG | - | chr7_2:14144628-14144647 | Msa1050180:intron | 55.0% | |
| AAACTAGACTGCCGACCCAC+GGG | + | chr7_2:14144642-14144661 | None:intergenic | 55.0% | |
| ACTGAACTCTCAGTACGGCC+TGG | + | chr7_2:14145041-14145060 | None:intergenic | 55.0% | |
| GGAATGCCATTGAGCGTGTC+CGG | - | chr7_2:14145072-14145091 | Msa1050180:CDS | 55.0% | |
| !! | CCAGGTAGCGGAACATGCAC+AGG | + | chr7_2:14142538-14142557 | None:intergenic | 60.0% |
| CCTGTGCATGTTCCGCTACC+TGG | - | chr7_2:14142535-14142554 | Msa1050180:intron | 60.0% | |
| TGTACGCCATGGTCTGCACG+AGG | - | chr7_2:14142653-14142672 | Msa1050180:intron | 60.0% | |
| GTCTGCACGAGGCCAGACAT+CGG | - | chr7_2:14142664-14142683 | Msa1050180:intron | 60.0% | |
| TTGCAGGGGGAGCTGTCTCA+TGG | - | chr7_2:14142896-14142915 | Msa1050180:intron | 60.0% | |
| GGCTGGAGGGGGAGAATTGT+AGG | - | chr7_2:14143311-14143330 | Msa1050180:intron | 60.0% | |
| GGCATTCCGGACACGCTCAA+TGG | + | chr7_2:14145081-14145100 | None:intergenic | 60.0% | |
| GTCTGGCCTCGTGCAGACCA+TGG | + | chr7_2:14142662-14142681 | None:intergenic | 65.0% | |
| TAAGAGGCCTACGGGTCCCG+TGG | - | chr7_2:14143747-14143766 | Msa1050180:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 14141389 | 14145256 | 14141389 | ID=Msa1050180;Name=Msa1050180 |
| chr7_2 | mRNA | 14141389 | 14145256 | 14141389 | ID=Msa1050180-mRNA-1;Parent=Msa1050180;Name=Msa1050180-mRNA-1;_AED=0.18;_eAED=0.19;_QI=0|0|0|1|1|1|2|0|181 |
| chr7_2 | exon | 14145023 | 14145256 | 14145023 | ID=Msa1050180-mRNA-1:exon:3468;Parent=Msa1050180-mRNA-1 |
| chr7_2 | exon | 14141389 | 14141700 | 14141389 | ID=Msa1050180-mRNA-1:exon:3467;Parent=Msa1050180-mRNA-1 |
| chr7_2 | CDS | 14145023 | 14145256 | 14145023 | ID=Msa1050180-mRNA-1:cds;Parent=Msa1050180-mRNA-1 |
| chr7_2 | CDS | 14141389 | 14141700 | 14141389 | ID=Msa1050180-mRNA-1:cds;Parent=Msa1050180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
