Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1051250 | XP_003623743.1 | 96.923 | 195 | 5 | 1 | 1 | 195 | 1 | 194 | 8.52e-136 | 388 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1051250 | sp|O22132|LBD19_ARATH | 71.429 | 119 | 31 | 3 | 15 | 132 | 19 | 135 | 4.30e-52 | 168 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1051250 | G7L0B7 | 96.923 | 195 | 5 | 1 | 1 | 195 | 1 | 194 | 4.07e-136 | 388 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1051250 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1051250 | MtrunA17_Chr7g0245861 | 99.010 | 101 | 1 | 0 | 1 | 101 | 1 | 101 | 4.23e-71 | 212 |
| Msa1051250 | MtrunA17_Chr8g0351721 | 63.077 | 195 | 60 | 6 | 4 | 194 | 10 | 196 | 1.38e-67 | 206 |
| Msa1051250 | MtrunA17_Chr8g0351701 | 72.642 | 106 | 27 | 2 | 11 | 116 | 22 | 125 | 3.43e-52 | 167 |
| Msa1051250 | MtrunA17_Chr7g0245871 | 67.619 | 105 | 32 | 2 | 12 | 116 | 27 | 129 | 3.85e-46 | 152 |
| Msa1051250 | MtrunA17_Chr7g0261031 | 65.546 | 119 | 36 | 4 | 10 | 125 | 6 | 122 | 1.22e-45 | 150 |
| Msa1051250 | MtrunA17_Chr1g0184271 | 54.225 | 142 | 60 | 4 | 12 | 151 | 12 | 150 | 5.18e-45 | 149 |
| Msa1051250 | MtrunA17_Chr7g0260971 | 65.487 | 113 | 37 | 2 | 4 | 116 | 6 | 116 | 2.00e-44 | 147 |
| Msa1051250 | MtrunA17_Chr1g0184281 | 58.065 | 124 | 50 | 2 | 10 | 133 | 13 | 134 | 6.78e-42 | 140 |
| Msa1051250 | MtrunA17_Chr6g0460951 | 62.385 | 109 | 37 | 3 | 12 | 120 | 40 | 144 | 7.14e-40 | 135 |
| Msa1051250 | MtrunA17_Chr5g0435641 | 61.616 | 99 | 36 | 2 | 10 | 108 | 5 | 101 | 2.31e-39 | 133 |
| Msa1051250 | MtrunA17_Chr5g0437571 | 46.386 | 166 | 76 | 5 | 9 | 164 | 3 | 165 | 2.87e-37 | 127 |
| Msa1051250 | MtrunA17_Chr3g0114061 | 42.857 | 161 | 78 | 3 | 6 | 155 | 2 | 159 | 2.98e-35 | 121 |
| Msa1051250 | MtrunA17_Chr2g0311601 | 53.509 | 114 | 44 | 3 | 8 | 115 | 3 | 113 | 8.79e-34 | 117 |
| Msa1051250 | MtrunA17_Chr7g0227511 | 53.043 | 115 | 51 | 2 | 12 | 126 | 11 | 122 | 6.46e-33 | 116 |
| Msa1051250 | MtrunA17_Chr3g0106101 | 51.402 | 107 | 49 | 2 | 9 | 115 | 4 | 107 | 3.25e-32 | 114 |
| Msa1051250 | MtrunA17_Chr4g0058651 | 58.586 | 99 | 38 | 2 | 10 | 108 | 9 | 104 | 1.03e-31 | 113 |
| Msa1051250 | MtrunA17_Chr3g0117121 | 55.660 | 106 | 44 | 2 | 10 | 115 | 8 | 110 | 2.07e-31 | 112 |
| Msa1051250 | MtrunA17_Chr6g0449641 | 53.704 | 108 | 47 | 2 | 12 | 119 | 9 | 113 | 2.77e-31 | 111 |
| Msa1051250 | MtrunA17_Chr4g0043421 | 54.902 | 102 | 43 | 2 | 12 | 113 | 15 | 113 | 3.69e-31 | 111 |
| Msa1051250 | MtrunA17_Chr4g0030001 | 42.958 | 142 | 67 | 3 | 11 | 141 | 23 | 161 | 5.76e-31 | 111 |
| Msa1051250 | MtrunA17_Chr5g0437401 | 51.923 | 104 | 47 | 2 | 13 | 116 | 12 | 112 | 1.88e-30 | 110 |
| Msa1051250 | MtrunA17_Chr5g0438091 | 43.038 | 158 | 78 | 5 | 12 | 162 | 39 | 191 | 2.11e-29 | 107 |
| Msa1051250 | MtrunA17_Chr3g0097221 | 52.778 | 108 | 48 | 2 | 12 | 119 | 7 | 111 | 1.34e-28 | 108 |
| Msa1051250 | MtrunA17_Chr6g0449651 | 50.943 | 106 | 49 | 2 | 10 | 115 | 65 | 167 | 6.42e-28 | 103 |
| Msa1051250 | MtrunA17_Chr3g0115431 | 50.926 | 108 | 50 | 2 | 9 | 116 | 6 | 110 | 1.49e-27 | 103 |
| Msa1051250 | MtrunA17_Chr3g0113891 | 50.000 | 100 | 47 | 2 | 13 | 112 | 15 | 111 | 1.59e-27 | 102 |
| Msa1051250 | MtrunA17_Chr5g0402611 | 40.698 | 172 | 66 | 5 | 12 | 183 | 8 | 143 | 2.32e-27 | 105 |
| Msa1051250 | MtrunA17_Chr1g0200201 | 50.485 | 103 | 48 | 2 | 13 | 115 | 73 | 172 | 8.63e-27 | 102 |
| Msa1051250 | MtrunA17_Chr3g0129071 | 50.962 | 104 | 48 | 2 | 12 | 115 | 47 | 147 | 1.01e-26 | 102 |
| Msa1051250 | MtrunA17_Chr6g0460941 | 55.556 | 90 | 38 | 2 | 12 | 101 | 7 | 94 | 1.58e-26 | 97.4 |
| Msa1051250 | MtrunA17_Chr5g0432451 | 53.846 | 104 | 45 | 2 | 12 | 115 | 43 | 143 | 5.06e-23 | 92.0 |
| Msa1051250 | MtrunA17_Chr5g0444351 | 42.453 | 106 | 58 | 2 | 11 | 116 | 4 | 106 | 1.73e-22 | 88.6 |
| Msa1051250 | MtrunA17_Chr8g0353981 | 49.550 | 111 | 53 | 2 | 12 | 122 | 7 | 114 | 8.07e-22 | 89.0 |
| Msa1051250 | MtrunA17_Chr7g0225111 | 38.462 | 104 | 61 | 2 | 13 | 116 | 6 | 106 | 2.51e-20 | 82.0 |
| Msa1051250 | MtrunA17_Chr8g0374601 | 39.048 | 105 | 61 | 2 | 12 | 116 | 26 | 127 | 2.05e-17 | 78.2 |
| Msa1051250 | MtrunA17_Chr8g0374591 | 40.952 | 105 | 59 | 2 | 12 | 116 | 8 | 109 | 6.40e-17 | 73.6 |
| Msa1051250 | MtrunA17_Chr8g0342351 | 37.736 | 106 | 63 | 2 | 13 | 118 | 13 | 115 | 1.02e-15 | 73.2 |
| Msa1051250 | MtrunA17_Chr2g0330201 | 37.143 | 105 | 63 | 2 | 13 | 117 | 20 | 121 | 1.13e-15 | 73.6 |
| Msa1051250 | MtrunA17_Chr6g0452691 | 39.623 | 106 | 60 | 3 | 13 | 117 | 10 | 112 | 2.55e-15 | 70.9 |
| Msa1051250 | MtrunA17_Chr8g0374581 | 36.538 | 104 | 64 | 1 | 12 | 115 | 8 | 109 | 8.09e-15 | 70.1 |
| Msa1051250 | MtrunA17_Chr4g0040831 | 40.625 | 96 | 54 | 2 | 13 | 108 | 16 | 108 | 9.36e-15 | 69.7 |
| Msa1051250 | MtrunA17_Chr4g0059901 | 37.143 | 105 | 63 | 2 | 13 | 117 | 11 | 112 | 1.27e-14 | 70.1 |
| Msa1051250 | MtrunA17_Chr6g0452671 | 33.929 | 112 | 70 | 3 | 1 | 112 | 1 | 108 | 1.74e-13 | 66.2 |
| Msa1051250 | MtrunA17_Chr6g0452661 | 34.906 | 106 | 58 | 5 | 13 | 110 | 10 | 112 | 2.05e-12 | 63.9 |
| Msa1051250 | MtrunA17_Chr2g0326051 | 51.786 | 56 | 27 | 0 | 60 | 115 | 5 | 60 | 1.58e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1051250 | AT2G45410.1 | 71.429 | 119 | 31 | 3 | 15 | 132 | 19 | 135 | 4.37e-53 | 168 |
| Msa1051250 | AT4G00210.1 | 63.971 | 136 | 43 | 3 | 10 | 141 | 9 | 142 | 2.22e-52 | 167 |
| Msa1051250 | AT2G45420.1 | 75.238 | 105 | 24 | 2 | 15 | 119 | 40 | 142 | 1.48e-48 | 159 |
| Msa1051250 | AT4G00220.1 | 69.524 | 105 | 30 | 2 | 15 | 119 | 20 | 122 | 1.04e-45 | 150 |
| Msa1051250 | AT3G03760.1 | 68.468 | 111 | 32 | 3 | 12 | 122 | 51 | 158 | 6.04e-45 | 150 |
| Msa1051250 | AT3G58190.1 | 57.851 | 121 | 49 | 2 | 12 | 132 | 11 | 129 | 8.10e-45 | 148 |
| Msa1051250 | AT2G42430.1 | 56.934 | 137 | 48 | 4 | 10 | 137 | 13 | 147 | 4.59e-44 | 147 |
| Msa1051250 | AT2G42440.1 | 55.200 | 125 | 49 | 3 | 10 | 129 | 5 | 127 | 1.09e-42 | 143 |
| Msa1051250 | AT5G06080.1 | 48.026 | 152 | 64 | 4 | 10 | 151 | 5 | 151 | 1.14e-40 | 136 |
| Msa1051250 | AT2G31310.1 | 58.879 | 107 | 42 | 2 | 10 | 116 | 5 | 109 | 1.64e-39 | 134 |
| Msa1051250 | AT2G30130.1 | 50.407 | 123 | 57 | 3 | 6 | 128 | 2 | 120 | 1.04e-33 | 119 |
| Msa1051250 | AT5G63090.4 | 57.143 | 105 | 42 | 2 | 12 | 116 | 11 | 112 | 1.79e-31 | 113 |
| Msa1051250 | AT5G63090.3 | 57.143 | 105 | 42 | 2 | 12 | 116 | 11 | 112 | 1.79e-31 | 113 |
| Msa1051250 | AT5G63090.2 | 57.143 | 105 | 42 | 2 | 12 | 116 | 11 | 112 | 1.79e-31 | 113 |
| Msa1051250 | AT5G63090.1 | 57.143 | 105 | 42 | 2 | 12 | 116 | 11 | 112 | 1.79e-31 | 113 |
| Msa1051250 | AT1G16530.1 | 49.153 | 118 | 55 | 2 | 11 | 125 | 13 | 128 | 2.50e-31 | 112 |
| Msa1051250 | AT3G27650.1 | 53.846 | 104 | 45 | 2 | 12 | 115 | 39 | 139 | 2.80e-30 | 109 |
| Msa1051250 | AT1G07900.1 | 40.741 | 162 | 82 | 5 | 11 | 164 | 32 | 187 | 1.53e-29 | 108 |
| Msa1051250 | AT3G11090.1 | 41.290 | 155 | 83 | 5 | 13 | 163 | 12 | 162 | 2.10e-29 | 107 |
| Msa1051250 | AT2G28500.1 | 50.962 | 104 | 48 | 2 | 12 | 115 | 55 | 155 | 8.68e-29 | 107 |
| Msa1051250 | AT5G66870.1 | 49.635 | 137 | 54 | 5 | 12 | 136 | 7 | 140 | 5.88e-28 | 107 |
| Msa1051250 | AT1G31320.1 | 53.333 | 90 | 39 | 2 | 12 | 101 | 13 | 99 | 9.27e-28 | 103 |
| Msa1051250 | AT3G26660.1 | 44.762 | 105 | 55 | 2 | 13 | 117 | 6 | 107 | 2.44e-27 | 100 |
| Msa1051250 | AT3G26620.1 | 44.762 | 105 | 55 | 2 | 13 | 117 | 6 | 107 | 4.14e-27 | 100 |
| Msa1051250 | AT2G23660.2 | 47.115 | 104 | 52 | 2 | 12 | 115 | 5 | 105 | 3.98e-25 | 99.8 |
| Msa1051250 | AT2G23660.3 | 47.115 | 104 | 52 | 2 | 12 | 115 | 5 | 105 | 3.98e-25 | 99.8 |
| Msa1051250 | AT2G23660.1 | 47.115 | 104 | 52 | 2 | 12 | 115 | 5 | 105 | 3.98e-25 | 99.8 |
| Msa1051250 | AT2G30340.1 | 48.077 | 104 | 51 | 2 | 12 | 115 | 52 | 152 | 1.04e-24 | 97.8 |
| Msa1051250 | AT2G30340.2 | 48.077 | 104 | 51 | 2 | 12 | 115 | 53 | 153 | 1.15e-24 | 97.8 |
| Msa1051250 | AT3G50510.1 | 43.636 | 110 | 59 | 2 | 7 | 116 | 7 | 113 | 4.69e-23 | 91.7 |
| Msa1051250 | AT3G50510.2 | 43.636 | 110 | 59 | 2 | 7 | 116 | 7 | 113 | 4.69e-23 | 91.7 |
| Msa1051250 | AT2G40470.2 | 52.885 | 104 | 46 | 2 | 12 | 115 | 20 | 120 | 4.88e-22 | 89.0 |
| Msa1051250 | AT2G40470.1 | 52.885 | 104 | 46 | 2 | 12 | 115 | 45 | 145 | 5.25e-22 | 89.7 |
| Msa1051250 | AT1G65620.1 | 52.381 | 105 | 47 | 2 | 12 | 116 | 9 | 110 | 6.23e-22 | 89.0 |
| Msa1051250 | AT1G65620.4 | 52.381 | 105 | 47 | 2 | 12 | 116 | 9 | 110 | 6.23e-22 | 89.0 |
| Msa1051250 | AT1G65620.3 | 52.381 | 105 | 47 | 2 | 12 | 116 | 9 | 110 | 6.23e-22 | 89.0 |
| Msa1051250 | AT1G65620.5 | 52.381 | 105 | 47 | 2 | 12 | 116 | 9 | 110 | 6.23e-22 | 89.0 |
| Msa1051250 | AT1G65620.2 | 52.381 | 105 | 47 | 2 | 12 | 116 | 9 | 110 | 6.23e-22 | 89.0 |
| Msa1051250 | AT1G72980.1 | 35.772 | 123 | 74 | 3 | 9 | 129 | 8 | 127 | 2.55e-15 | 71.6 |
| Msa1051250 | AT5G35900.1 | 33.043 | 115 | 74 | 2 | 13 | 127 | 6 | 117 | 4.23e-15 | 70.9 |
| Msa1051250 | AT3G13850.1 | 33.898 | 118 | 75 | 2 | 13 | 130 | 37 | 151 | 7.07e-15 | 71.2 |
| Msa1051250 | AT3G47870.1 | 29.907 | 107 | 72 | 2 | 11 | 117 | 35 | 138 | 2.39e-12 | 64.7 |
| Msa1051250 | AT1G06280.1 | 41.558 | 77 | 42 | 2 | 13 | 89 | 25 | 98 | 2.64e-12 | 63.5 |
Find 36 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGAGAGAGAGATGGATTT+GGG | 0.204949 | 7_2:-17815370 | None:intergenic |
| AGGGCTACTGACCCTGTTTA+TGG | 0.239262 | 7_2:-17815115 | Msa1051250:CDS |
| TTTAGAGAGAGAGATGGATT+TGG | 0.290229 | 7_2:-17815371 | None:intergenic |
| AAGGCAAAGCTTGGAATTCC+TGG | 0.322902 | 7_2:+17812554 | None:intergenic |
| GGGTGTGGGGATGACGGTGG+TGG | 0.353668 | 7_2:-17815349 | Msa1051250:CDS |
| AGAGAGATGGATTTGGGGTG+TGG | 0.373011 | 7_2:-17815364 | None:intergenic |
| GTCATGAAGTTGTTGATTAT+AGG | 0.378812 | 7_2:+17812576 | None:intergenic |
| TGACCTGATGACTCAAAATA+TGG | 0.381006 | 7_2:+17815265 | None:intergenic |
| CTTTGAGGCTGTTGAAATTG+AGG | 0.406522 | 7_2:+17812745 | None:intergenic |
| TGAGCAACACAACCATAAAC+AGG | 0.407283 | 7_2:+17815103 | None:intergenic |
| GAGAGATGGATTTGGGGTGT+GGG | 0.427932 | 7_2:-17815363 | None:intergenic |
| GCTGCAGTTCATAAGGTGTT+TGG | 0.429613 | 7_2:-17815226 | Msa1051250:CDS |
| TTGGGGTGTGGGGATGACGG+TGG | 0.437721 | 7_2:-17815352 | Msa1051250:CDS |
| CCTCTTTGCTCTTCAACAAC+AGG | 0.440953 | 7_2:-17815080 | Msa1051250:intron |
| GCATCAAGACGCTTATGAAC+TGG | 0.441293 | 7_2:+17815169 | None:intergenic |
| GATTTGGGGTGTGGGGATGA+CGG | 0.456260 | 7_2:-17815355 | Msa1051250:CDS |
| AAAATTCTCAAGGCAAAGCT+TGG | 0.480367 | 7_2:+17812545 | None:intergenic |
| AGTAAAGATGAATGCAAAGT+TGG | 0.490772 | 7_2:+17812709 | None:intergenic |
| TGATTATAGGAATAGTATGA+TGG | 0.495256 | 7_2:+17812589 | None:intergenic |
| TCTGCTATGAGGCTCTTGCT+AGG | 0.495453 | 7_2:-17815135 | Msa1051250:CDS |
| CTGCTATGAGGCTCTTGCTA+GGG | 0.502068 | 7_2:-17815134 | Msa1051250:CDS |
| GCGATTCAATATTGAAAGAC+GGG | 0.503238 | 7_2:+17812780 | None:intergenic |
| TCTTACATGTCCATGCACTT+TGG | 0.510678 | 7_2:-17812658 | Msa1051250:CDS |
| GGTGTGGGGATGACGGTGGT+GGG | 0.515639 | 7_2:-17815348 | Msa1051250:CDS |
| TGAAAGACGGGCTTGTACAT+AGG | 0.516839 | 7_2:+17812792 | None:intergenic |
| TGTTGTTACTCTCTGCTATG+AGG | 0.534536 | 7_2:-17815146 | Msa1051250:CDS |
| TAGAGAGAGAGATGGATTTG+GGG | 0.538982 | 7_2:-17815369 | None:intergenic |
| AGAGATGGATTTGGGGTGTG+GGG | 0.541784 | 7_2:-17815362 | None:intergenic |
| GGTGATATTGAAGAGCTTTG+AGG | 0.552521 | 7_2:+17812730 | None:intergenic |
| TTGAGAAGAAAGTGTGTGAA+AGG | 0.553888 | 7_2:-17815304 | Msa1051250:CDS |
| GATGACGGTGGTGGGCCTTG+TGG | 0.575954 | 7_2:-17815340 | Msa1051250:CDS |
| TGCGATTCAATATTGAAAGA+CGG | 0.576843 | 7_2:+17812779 | None:intergenic |
| AAGAGGATGACCAAAGTGCA+TGG | 0.603188 | 7_2:+17812648 | None:intergenic |
| TAATCAACAACTTCATGACC+AGG | 0.619495 | 7_2:-17812572 | Msa1051250:CDS |
| CCTGTTGTTGAAGAGCAAAG+AGG | 0.633272 | 7_2:+17815080 | None:intergenic |
| GAGCAACACAACCATAAACA+GGG | 0.707824 | 7_2:+17815104 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATTTTGGAAAATAAAT+AGG | + | chr7_2:17813172-17813191 | None:intergenic | 10.0% |
| !!! | AAATAGGATTTATATTATTT+TGG | + | chr7_2:17813184-17813203 | None:intergenic | 10.0% |
| !! | AAAAAATGACATATATAAAT+AGG | + | chr7_2:17813200-17813219 | None:intergenic | 10.0% |
| !!! | ATTTTATCAATAATATTCTT+TGG | - | chr7_2:17813230-17813249 | Msa1051250:intron | 10.0% |
| !! | ATAAAAATAGGAATTATAAT+AGG | + | chr7_2:17814049-17814068 | None:intergenic | 10.0% |
| !!! | TATTATAATTCCTATTTTTA+TGG | - | chr7_2:17814048-17814067 | Msa1051250:intron | 10.0% |
| !!! | ATTTTGATATCAATAATTTA+GGG | + | chr7_2:17814855-17814874 | None:intergenic | 10.0% |
| !!! | TATTTTGATATCAATAATTT+AGG | + | chr7_2:17814856-17814875 | None:intergenic | 10.0% |
| !! | TATATATATACGAATTAGTT+AGG | + | chr7_2:17812926-17812945 | None:intergenic | 15.0% |
| !! | TAATTCGTATATATATAACT+TGG | - | chr7_2:17812929-17812948 | Msa1051250:intron | 15.0% |
| !! | ATTCAAGAAAAACTTATAAT+AGG | - | chr7_2:17813049-17813068 | Msa1051250:intron | 15.0% |
| !! | TAAATAGGATTTATATTGTT+TGG | + | chr7_2:17813157-17813176 | None:intergenic | 15.0% |
| !!! | CTTTTTTTTTTCTTTTTTTC+TGG | + | chr7_2:17813363-17813382 | None:intergenic | 15.0% |
| !! | CAGAAAAAAAGAAAAAAAAA+AGG | - | chr7_2:17813361-17813380 | Msa1051250:intron | 15.0% |
| !!! | ATGCAATGTAAAATAAATTT+TGG | + | chr7_2:17813592-17813611 | None:intergenic | 15.0% |
| !!! | AAGTTATATTTGTAGATTTT+TGG | - | chr7_2:17813867-17813886 | Msa1051250:intron | 15.0% |
| !!! | AGTTATATTTGTAGATTTTT+GGG | - | chr7_2:17813868-17813887 | Msa1051250:intron | 15.0% |
| !! | TAAATGAATAAATGATCAAT+AGG | + | chr7_2:17815007-17815026 | None:intergenic | 15.0% |
| !! | TGATCATTTATTCATTTATA+TGG | - | chr7_2:17815009-17815028 | Msa1051250:intron | 15.0% |
| !! | TTATTCATTTATATGGTATA+TGG | - | chr7_2:17815016-17815035 | Msa1051250:intron | 15.0% |
| !! | TATTCATTTATATGGTATAT+GGG | - | chr7_2:17815017-17815036 | Msa1051250:intron | 15.0% |
| !! | TTATATACTTGATTAATTAC+AGG | - | chr7_2:17815071-17815090 | Msa1051250:intron | 15.0% |
| !! | AGAAGAATGGTTTAATAAAT+TGG | - | chr7_2:17813254-17813273 | Msa1051250:intron | 20.0% |
| !!! | TATATTGCTTTAATTTGTTC+AGG | + | chr7_2:17813468-17813487 | None:intergenic | 20.0% |
| !!! | TCAAAGGCATAATATAATTA+AGG | - | chr7_2:17813740-17813759 | Msa1051250:intron | 20.0% |
| !!! | AGTTTACTAAATTTTATTCC+CGG | - | chr7_2:17813930-17813949 | Msa1051250:intron | 20.0% |
| !! | TAAGTCACACAAAAAAAAAA+AGG | - | chr7_2:17814227-17814246 | Msa1051250:intron | 20.0% |
| !! | AAGTCACACAAAAAAAAAAA+GGG | - | chr7_2:17814228-17814247 | Msa1051250:intron | 20.0% |
| !! | AAATGTTAATAGTACCTTTA+GGG | - | chr7_2:17814251-17814270 | Msa1051250:intron | 20.0% |
| !!! | TGACTTACATAATGTTATTT+GGG | + | chr7_2:17814384-17814403 | None:intergenic | 20.0% |
| !! | ATGACTTACATAATGTTATT+TGG | + | chr7_2:17814385-17814404 | None:intergenic | 20.0% |
| !! | TGTATAAATACAACTATGTT+AGG | + | chr7_2:17814604-17814623 | None:intergenic | 20.0% |
| !! | TTTCTAATTCACAAAAGATA+AGG | + | chr7_2:17814674-17814693 | None:intergenic | 20.0% |
| !! | AATAAATGATCAATAGGTTA+GGG | + | chr7_2:17815001-17815020 | None:intergenic | 20.0% |
| ! | AATATTCTTTGGTAGAAGAA+TGG | - | chr7_2:17813241-17813260 | Msa1051250:intron | 25.0% |
| ! | TCTAAAGAAAATTACCAGTT+AGG | + | chr7_2:17813330-17813349 | None:intergenic | 25.0% |
| ! | AGAAGAAAGATCATATTCAT+AGG | - | chr7_2:17813406-17813425 | Msa1051250:intron | 25.0% |
| ! | GAAGAAAGATCATATTCATA+GGG | - | chr7_2:17813407-17813426 | Msa1051250:intron | 25.0% |
| !!! | ATTTTTGGGAATAAAACGAT+AGG | - | chr7_2:17813882-17813901 | Msa1051250:intron | 25.0% |
| !! | GAAAAATTTTCCCAAAGAAA+AGG | - | chr7_2:17813975-17813994 | Msa1051250:intron | 25.0% |
| !!! | CATCTTTTTTCTAAATACCT+TGG | - | chr7_2:17814100-17814119 | Msa1051250:intron | 25.0% |
| ! | ATTCCTTAGAACATAAAGAT+GGG | + | chr7_2:17814135-17814154 | None:intergenic | 25.0% |
| ! | TATTCCTTAGAACATAAAGA+TGG | + | chr7_2:17814136-17814155 | None:intergenic | 25.0% |
| !! | TTCTAAGGAATATTATTCCT+AGG | - | chr7_2:17814144-17814163 | Msa1051250:intron | 25.0% |
| ! | ATTATTCCTAGGAATGAATT+TGG | - | chr7_2:17814155-17814174 | Msa1051250:intron | 25.0% |
| ! | GAAATGTTAATAGTACCTTT+AGG | - | chr7_2:17814250-17814269 | Msa1051250:intron | 25.0% |
| ! | AATTTGTACATTCAAAGCAT+TGG | - | chr7_2:17814311-17814330 | Msa1051250:intron | 25.0% |
| ! | ATTTCACTTGATTAAAGAGT+GGG | + | chr7_2:17814490-17814509 | None:intergenic | 25.0% |
| !!! | TGCTTTTGATACTTTAAAGA+TGG | - | chr7_2:17814515-17814534 | Msa1051250:intron | 25.0% |
| ! | ACAAAAGATAAGGTAACAAA+CGG | + | chr7_2:17814664-17814683 | None:intergenic | 25.0% |
| ! | CTAATACATTACACAACAAT+GGG | - | chr7_2:17814917-17814936 | Msa1051250:intron | 25.0% |
| ! | TAATACATTACACAACAATG+GGG | - | chr7_2:17814918-17814937 | Msa1051250:intron | 25.0% |
| !! | AGTGTTTAGGATAATAATGT+TGG | + | chr7_2:17814956-17814975 | None:intergenic | 25.0% |
| ! | GAATAAATGATCAATAGGTT+AGG | + | chr7_2:17815002-17815021 | None:intergenic | 25.0% |
| !!! | TGATATTGATCATTTTGAAG+AGG | + | chr7_2:17815282-17815301 | None:intergenic | 25.0% |
| !!! | TAGTATGATGGATTTTCAAA+AGG | + | chr7_2:17815312-17815331 | None:intergenic | 25.0% |
| ! | TGATTATAGGAATAGTATGA+TGG | + | chr7_2:17815324-17815343 | None:intergenic | 25.0% |
| GGCAGAAAAAATGAAAACTA+AGG | + | chr7_2:17812905-17812924 | None:intergenic | 30.0% | |
| !! | TAACTTGGTGCTTTAAAAAC+TGG | - | chr7_2:17812944-17812963 | Msa1051250:intron | 30.0% |
| AATGTATATTCTCAAGGTGT+TGG | - | chr7_2:17813085-17813104 | Msa1051250:intron | 30.0% | |
| CCACTAAAAGGAAACTAATA+AGG | + | chr7_2:17813124-17813143 | None:intergenic | 30.0% | |
| !! | CCTTATTAGTTTCCTTTTAG+TGG | - | chr7_2:17813121-17813140 | Msa1051250:intron | 30.0% |
| ATGCAAATAAGTATCCTAAC+TGG | - | chr7_2:17813313-17813332 | Msa1051250:intron | 30.0% | |
| !!! | TGTGTACTTTTCTAAAGTAG+TGG | - | chr7_2:17813524-17813543 | Msa1051250:intron | 30.0% |
| TTGTATTGAGTATGTTCTGT+TGG | - | chr7_2:17813616-17813635 | Msa1051250:intron | 30.0% | |
| TGTATTGAGTATGTTCTGTT+GGG | - | chr7_2:17813617-17813636 | Msa1051250:intron | 30.0% | |
| ATGTTTGATCGTGCATTTAA+TGG | + | chr7_2:17813767-17813786 | None:intergenic | 30.0% | |
| ! | AATTTTCCCAAAGAAAAGGT+TGG | - | chr7_2:17813979-17813998 | Msa1051250:intron | 30.0% |
| ! | ATTTTCCCAAAGAAAAGGTT+GGG | - | chr7_2:17813980-17813999 | Msa1051250:intron | 30.0% |
| ! | TTATTCCCAACCTTTTCTTT+GGG | + | chr7_2:17813988-17814007 | None:intergenic | 30.0% |
| ! | TTTATTCCCAACCTTTTCTT+TGG | + | chr7_2:17813989-17814008 | None:intergenic | 30.0% |
| !!! | TTCCTATTTTTATGGTTCTC+AGG | - | chr7_2:17814056-17814075 | Msa1051250:intron | 30.0% |
| TTCCTGAGAACCATAAAAAT+AGG | + | chr7_2:17814061-17814080 | None:intergenic | 30.0% | |
| ! | AAGATGGGAATTTTATTCCA+AGG | + | chr7_2:17814120-17814139 | None:intergenic | 30.0% |
| ATTCCCATCTTTATGTTCTA+AGG | - | chr7_2:17814129-17814148 | Msa1051250:intron | 30.0% | |
| AGTTTACCAAATTCATTCCT+AGG | + | chr7_2:17814164-17814183 | None:intergenic | 30.0% | |
| CATCATATTCCAATATTGTG+TGG | + | chr7_2:17814422-17814441 | None:intergenic | 30.0% | |
| ! | AATATTGGAATATGATGACG+AGG | - | chr7_2:17814425-17814444 | Msa1051250:intron | 30.0% |
| ! | ATATTGGAATATGATGACGA+GGG | - | chr7_2:17814426-17814445 | Msa1051250:intron | 30.0% |
| GATTTCACTTGATTAAAGAG+TGG | + | chr7_2:17814491-17814510 | None:intergenic | 30.0% | |
| CAAAAGATAAGGTAACAAAC+GGG | + | chr7_2:17814663-17814682 | None:intergenic | 30.0% | |
| TGTATTAGCGATGACATTAA+AGG | + | chr7_2:17814905-17814924 | None:intergenic | 30.0% | |
| GCTAATACATTACACAACAA+TGG | - | chr7_2:17814916-17814935 | Msa1051250:intron | 30.0% | |
| ! | CAGCTTTAGTATTAGTGTTT+AGG | + | chr7_2:17814969-17814988 | None:intergenic | 30.0% |
| ACTTGATTAATTACAGGTTG+TGG | - | chr7_2:17815077-17815096 | Msa1051250:intron | 30.0% | |
| TGCGATTCAATATTGAAAGA+CGG | + | chr7_2:17815134-17815153 | None:intergenic | 30.0% | |
| AGTAAAGATGAATGCAAAGT+TGG | + | chr7_2:17815204-17815223 | None:intergenic | 30.0% | |
| ! | GTCATGAAGTTGTTGATTAT+AGG | + | chr7_2:17815337-17815356 | None:intergenic | 30.0% |
| ! | TTGAGAAGAAAGTGTGTGAA+AGG | - | chr7_2:17812606-17812625 | Msa1051250:CDS | 35.0% |
| TGACCTGATGACTCAAAATA+TGG | + | chr7_2:17812648-17812667 | None:intergenic | 35.0% | |
| !! | TATTTTGAGTCATCAGGTCA+AGG | - | chr7_2:17812648-17812667 | Msa1051250:CDS | 35.0% |
| ! | TCATTTTGCTGCAGTTCATA+AGG | - | chr7_2:17812677-17812696 | Msa1051250:CDS | 35.0% |
| GCAGCTAATGTATATTCTCA+AGG | - | chr7_2:17813079-17813098 | Msa1051250:intron | 35.0% | |
| ! | AAGGTATAAGAGTATGAGAG+CGG | - | chr7_2:17813380-17813399 | Msa1051250:intron | 35.0% |
| !! | AGCTCTGGTTAGGTTTTATA+TGG | - | chr7_2:17813655-17813674 | Msa1051250:intron | 35.0% |
| AAGTTTCATGGTAAGTCTAG+TGG | + | chr7_2:17813797-17813816 | None:intergenic | 35.0% | |
| ATGTGAGGAACTAAGTTTCA+TGG | + | chr7_2:17813809-17813828 | None:intergenic | 35.0% | |
| GTAATCATCACATGAATGTG+AGG | + | chr7_2:17813824-17813843 | None:intergenic | 35.0% | |
| ! | TCCCAAGAACGTTTTATATC+CGG | + | chr7_2:17813952-17813971 | None:intergenic | 35.0% |
| AATAAAGTTCCCATGGAGAT+GGG | - | chr7_2:17814003-17814022 | Msa1051250:intron | 35.0% | |
| GAATTTATTCCCATCTCCAT+GGG | + | chr7_2:17814015-17814034 | None:intergenic | 35.0% | |
| TGAATTTATTCCCATCTCCA+TGG | + | chr7_2:17814016-17814035 | None:intergenic | 35.0% | |
| TCATGTCAACCACACAATAT+TGG | - | chr7_2:17814410-17814429 | Msa1051250:intron | 35.0% | |
| GCGATTCAATATTGAAAGAC+GGG | + | chr7_2:17815133-17815152 | None:intergenic | 35.0% | |
| TAATCAACAACTTCATGACC+AGG | - | chr7_2:17815338-17815357 | Msa1051250:CDS | 35.0% | |
| AAAAACTTGCAAGCACCACA+AGG | + | chr7_2:17812588-17812607 | None:intergenic | 40.0% | |
| !! | GCACCATATTTTGAGTCATC+AGG | - | chr7_2:17812642-17812661 | Msa1051250:CDS | 40.0% |
| TGTTGTTACTCTCTGCTATG+AGG | - | chr7_2:17812764-17812783 | Msa1051250:CDS | 40.0% | |
| GAGCAACACAACCATAAACA+GGG | + | chr7_2:17812809-17812828 | None:intergenic | 40.0% | |
| TGAGCAACACAACCATAAAC+AGG | + | chr7_2:17812810-17812829 | None:intergenic | 40.0% | |
| AAAACTGGTAACCACTAACC+TGG | - | chr7_2:17812959-17812978 | Msa1051250:intron | 40.0% | |
| !! | TTATGAACTTGTTACCCTCC+AGG | + | chr7_2:17812980-17812999 | None:intergenic | 40.0% |
| GGACAAAAGAGACCACTAAA+AGG | + | chr7_2:17813136-17813155 | None:intergenic | 40.0% | |
| ! | AGGTATAAGAGTATGAGAGC+GGG | - | chr7_2:17813381-17813400 | Msa1051250:intron | 40.0% |
| TTTGACACATTTGTCAGCTC+TGG | - | chr7_2:17813640-17813659 | Msa1051250:intron | 40.0% | |
| TGGAACGAATGCATACACTA+AGG | - | chr7_2:17813675-17813694 | Msa1051250:intron | 40.0% | |
| ACATAACACTACCGTGAAAG+GGG | + | chr7_2:17813705-17813724 | None:intergenic | 40.0% | |
| CACATAACACTACCGTGAAA+GGG | + | chr7_2:17813706-17813725 | None:intergenic | 40.0% | |
| TGCATGTCTTGTGATCTCAA+AGG | - | chr7_2:17813724-17813743 | Msa1051250:intron | 40.0% | |
| TCCCGGATATAAAACGTTCT+TGG | - | chr7_2:17813947-17813966 | Msa1051250:intron | 40.0% | |
| ! | CCCAAGAACGTTTTATATCC+GGG | + | chr7_2:17813951-17813970 | None:intergenic | 40.0% |
| CCCGGATATAAAACGTTCTT+GGG | - | chr7_2:17813948-17813967 | Msa1051250:intron | 40.0% | |
| GAATAAAGTTCCCATGGAGA+TGG | - | chr7_2:17814002-17814021 | Msa1051250:intron | 40.0% | |
| !! | TACCTTTAGGGCACTCTTTA+AGG | - | chr7_2:17814263-17814282 | Msa1051250:intron | 40.0% |
| !! | ATCCTTAAAGAGTGCCCTAA+AGG | + | chr7_2:17814268-17814287 | None:intergenic | 40.0% |
| TAAAGAGTGGGTGATAGAGT+GGG | + | chr7_2:17814478-17814497 | None:intergenic | 40.0% | |
| TTAAAGAGTGGGTGATAGAG+TGG | + | chr7_2:17814479-17814498 | None:intergenic | 40.0% | |
| TCAAGTGTCACAACAGTGTT+AGG | - | chr7_2:17814636-17814655 | Msa1051250:intron | 40.0% | |
| !! | CTTTGAGGCTGTTGAAATTG+AGG | + | chr7_2:17815168-17815187 | None:intergenic | 40.0% |
| GGTGATATTGAAGAGCTTTG+AGG | + | chr7_2:17815183-17815202 | None:intergenic | 40.0% | |
| TCTTACATGTCCATGCACTT+TGG | - | chr7_2:17815252-17815271 | Msa1051250:CDS | 40.0% | |
| ! | GCTGCAGTTCATAAGGTGTT+TGG | - | chr7_2:17812684-17812703 | Msa1051250:CDS | 45.0% |
| GCATCAAGACGCTTATGAAC+TGG | + | chr7_2:17812744-17812763 | None:intergenic | 45.0% | |
| CCTGTTGTTGAAGAGCAAAG+AGG | + | chr7_2:17812833-17812852 | None:intergenic | 45.0% | |
| CCTCTTTGCTCTTCAACAAC+AGG | - | chr7_2:17812830-17812849 | Msa1051250:intron | 45.0% | |
| ! | GGTATAAGAGTATGAGAGCG+GGG | - | chr7_2:17813382-17813401 | Msa1051250:intron | 45.0% |
| ! | CACATTTGTCAGCTCTGGTT+AGG | - | chr7_2:17813645-17813664 | Msa1051250:intron | 45.0% |
| GCACATAACACTACCGTGAA+AGG | + | chr7_2:17813707-17813726 | None:intergenic | 45.0% | |
| GGTTGGGAATAAAGTTCCCA+TGG | - | chr7_2:17813996-17814015 | Msa1051250:intron | 45.0% | |
| ! | TGGAATATGATGACGAGGGT+TGG | - | chr7_2:17814430-17814449 | Msa1051250:intron | 45.0% |
| TGGGTGATAGAGTGGGATAT+TGG | + | chr7_2:17814471-17814490 | None:intergenic | 45.0% | |
| ! | TGAAAGACGGGCTTGTACAT+AGG | + | chr7_2:17815121-17815140 | None:intergenic | 45.0% |
| AAGAGGATGACCAAAGTGCA+TGG | + | chr7_2:17815265-17815284 | None:intergenic | 45.0% | |
| AAGGCAAAGCTTGGAATTCC+TGG | + | chr7_2:17815359-17815378 | None:intergenic | 45.0% | |
| TCTGCTATGAGGCTCTTGCT+AGG | - | chr7_2:17812775-17812794 | Msa1051250:CDS | 50.0% | |
| CTGCTATGAGGCTCTTGCTA+GGG | - | chr7_2:17812776-17812795 | Msa1051250:CDS | 50.0% | |
| AGGGCTACTGACCCTGTTTA+TGG | - | chr7_2:17812795-17812814 | Msa1051250:CDS | 50.0% | |
| ACTGGTAACCACTAACCTGG+AGG | - | chr7_2:17812962-17812981 | Msa1051250:intron | 50.0% | |
| CTGGTAACCACTAACCTGGA+GGG | - | chr7_2:17812963-17812982 | Msa1051250:intron | 50.0% | |
| CTTGTTACCCTCCAGGTTAG+TGG | + | chr7_2:17812973-17812992 | None:intergenic | 50.0% | |
| ACTAAGGCATGCCCCTTTCA+CGG | - | chr7_2:17813691-17813710 | Msa1051250:intron | 50.0% | |
| ! | GATTTGGGGTGTGGGGATGA+CGG | - | chr7_2:17812555-17812574 | Msa1051250:CDS | 55.0% |
| ! | TTGGGGTGTGGGGATGACGG+TGG | - | chr7_2:17812558-17812577 | Msa1051250:CDS | 65.0% |
| ! | GGTGTGGGGATGACGGTGGT+GGG | - | chr7_2:17812562-17812581 | Msa1051250:CDS | 65.0% |
| !! | GATGACGGTGGTGGGCCTTG+TGG | - | chr7_2:17812570-17812589 | Msa1051250:CDS | 65.0% |
| ! | GGGTGTGGGGATGACGGTGG+TGG | - | chr7_2:17812561-17812580 | Msa1051250:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 17812552 | 17815380 | 17812552 | ID=Msa1051250;Name=Msa1051250 |
| chr7_2 | mRNA | 17812552 | 17815380 | 17812552 | ID=Msa1051250-mRNA-1;Parent=Msa1051250;Name=Msa1051250-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|2|0|195 |
| chr7_2 | exon | 17815081 | 17815380 | 17815081 | ID=Msa1051250-mRNA-1:exon:4048;Parent=Msa1051250-mRNA-1 |
| chr7_2 | exon | 17812552 | 17812839 | 17812552 | ID=Msa1051250-mRNA-1:exon:4047;Parent=Msa1051250-mRNA-1 |
| chr7_2 | CDS | 17815081 | 17815380 | 17815081 | ID=Msa1051250-mRNA-1:cds;Parent=Msa1051250-mRNA-1 |
| chr7_2 | CDS | 17812552 | 17812839 | 17812552 | ID=Msa1051250-mRNA-1:cds;Parent=Msa1051250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
