Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054050 | AES78253.1 | 86.592 | 537 | 51 | 2 | 8 | 523 | 17 | 553 | 0.0 | 888 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054050 | sp|Q9ZWJ9|ARR2_ARATH | 36.771 | 223 | 112 | 3 | 4 | 197 | 50 | 272 | 4.76e-41 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054050 | G7L033 | 86.592 | 537 | 51 | 2 | 8 | 523 | 17 | 553 | 0.0 | 888 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1054050 | TF | GARP-ARR-B |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054050 | MtrunA17_Chr7g0223971 | 80.502 | 518 | 47 | 3 | 60 | 523 | 1 | 518 | 0.0 | 771 |
| Msa1054050 | MtrunA17_Chr7g0223991 | 71.698 | 212 | 44 | 2 | 208 | 419 | 24 | 219 | 1.62e-94 | 287 |
| Msa1054050 | MtrunA17_Chr6g0473731 | 44.522 | 429 | 163 | 12 | 58 | 456 | 10 | 393 | 2.92e-90 | 283 |
| Msa1054050 | MtrunA17_Chr4g0067981 | 26.694 | 487 | 253 | 12 | 1 | 404 | 54 | 519 | 2.93e-40 | 154 |
| Msa1054050 | MtrunA17_Chr2g0294911 | 34.247 | 219 | 125 | 2 | 1 | 200 | 52 | 270 | 7.24e-40 | 152 |
| Msa1054050 | MtrunA17_Chr1g0161431 | 36.036 | 222 | 108 | 4 | 6 | 197 | 39 | 256 | 1.30e-38 | 149 |
| Msa1054050 | MtrunA17_Chr1g0149841 | 35.321 | 218 | 118 | 2 | 6 | 200 | 33 | 250 | 1.29e-37 | 144 |
| Msa1054050 | MtrunA17_Chr8g0376881 | 34.322 | 236 | 130 | 4 | 5 | 215 | 52 | 287 | 2.24e-36 | 142 |
| Msa1054050 | MtrunA17_Chr3g0123131 | 34.167 | 240 | 125 | 3 | 6 | 215 | 41 | 277 | 2.28e-36 | 142 |
| Msa1054050 | MtrunA17_Chr3g0137101 | 34.685 | 222 | 118 | 3 | 6 | 200 | 36 | 257 | 7.24e-36 | 141 |
| Msa1054050 | MtrunA17_Chr4g0009851 | 32.414 | 290 | 162 | 10 | 6 | 281 | 39 | 308 | 2.36e-35 | 134 |
| Msa1054050 | MtrunA17_Chr6g0471041 | 37.019 | 208 | 106 | 4 | 6 | 203 | 42 | 234 | 2.68e-34 | 134 |
| Msa1054050 | MtrunA17_Chr4g0009901 | 35.821 | 201 | 124 | 2 | 6 | 206 | 38 | 233 | 3.05e-34 | 130 |
| Msa1054050 | MtrunA17_Chr4g0009981 | 29.545 | 264 | 171 | 5 | 23 | 281 | 2 | 255 | 6.42e-34 | 129 |
| Msa1054050 | MtrunA17_Chr7g0275401 | 34.722 | 216 | 117 | 2 | 6 | 197 | 33 | 248 | 1.24e-32 | 126 |
| Msa1054050 | MtrunA17_Chr7g0275891 | 32.035 | 231 | 121 | 4 | 6 | 200 | 33 | 263 | 9.09e-32 | 125 |
| Msa1054050 | MtrunA17_Chr4g0074411 | 33.186 | 226 | 129 | 4 | 2 | 205 | 40 | 265 | 1.78e-31 | 128 |
| Msa1054050 | MtrunA17_Chr3g0134481 | 34.225 | 187 | 84 | 2 | 6 | 192 | 36 | 183 | 3.28e-31 | 119 |
| Msa1054050 | MtrunA17_Chr2g0304841 | 32.353 | 238 | 125 | 4 | 6 | 208 | 46 | 282 | 8.79e-31 | 126 |
| Msa1054050 | MtrunA17_Chr1g0149851 | 32.917 | 240 | 123 | 3 | 6 | 207 | 33 | 272 | 5.24e-30 | 123 |
| Msa1054050 | MtrunA17_Chr4g0074401 | 33.778 | 225 | 126 | 3 | 6 | 207 | 45 | 269 | 1.89e-29 | 122 |
| Msa1054050 | MtrunA17_Chr3g0134461 | 35.484 | 186 | 90 | 2 | 6 | 190 | 36 | 192 | 4.78e-29 | 113 |
| Msa1054050 | MtrunA17_Chr4g0074421 | 35.829 | 187 | 102 | 3 | 27 | 195 | 1 | 187 | 3.13e-26 | 105 |
| Msa1054050 | MtrunA17_Chr1g0149831 | 33.152 | 184 | 97 | 3 | 40 | 200 | 4 | 184 | 4.65e-24 | 100 |
| Msa1054050 | MtrunA17_Chr4g0031961 | 44.792 | 96 | 43 | 3 | 134 | 225 | 124 | 213 | 1.88e-18 | 86.3 |
| Msa1054050 | MtrunA17_Chr4g0009991 | 36.885 | 122 | 68 | 2 | 71 | 190 | 2 | 116 | 3.79e-18 | 80.5 |
| Msa1054050 | MtrunA17_Chr7g0255711 | 50.000 | 68 | 34 | 0 | 130 | 197 | 80 | 147 | 8.65e-18 | 84.0 |
| Msa1054050 | MtrunA17_Chr8g0391911 | 27.753 | 227 | 131 | 7 | 6 | 205 | 37 | 257 | 1.34e-15 | 77.0 |
| Msa1054050 | MtrunA17_Chr4g0011071 | 29.252 | 147 | 92 | 3 | 25 | 167 | 36 | 174 | 2.53e-15 | 74.3 |
| Msa1054050 | MtrunA17_Chr4g0040481 | 61.111 | 54 | 21 | 0 | 140 | 193 | 157 | 210 | 5.10e-15 | 77.4 |
| Msa1054050 | MtrunA17_Chr2g0324891 | 61.111 | 54 | 21 | 0 | 140 | 193 | 160 | 213 | 1.32e-14 | 75.9 |
| Msa1054050 | MtrunA17_Chr4g0054981 | 50.794 | 63 | 31 | 0 | 140 | 202 | 309 | 371 | 4.07e-14 | 75.1 |
| Msa1054050 | MtrunA17_Chr5g0400241 | 53.333 | 60 | 28 | 0 | 140 | 199 | 310 | 369 | 5.85e-14 | 74.3 |
| Msa1054050 | MtrunA17_Chr8g0383961 | 28.718 | 195 | 103 | 6 | 6 | 197 | 42 | 203 | 1.06e-12 | 68.6 |
| Msa1054050 | MtrunA17_Chr6g0469321 | 61.364 | 44 | 17 | 0 | 157 | 200 | 70 | 113 | 3.87e-12 | 65.1 |
| Msa1054050 | MtrunA17_Chr5g0417521 | 54.545 | 55 | 24 | 1 | 141 | 194 | 15 | 69 | 1.03e-11 | 66.6 |
| Msa1054050 | MtrunA17_Chr6g0461641 | 54.545 | 55 | 24 | 1 | 141 | 194 | 42 | 96 | 1.29e-11 | 66.6 |
| Msa1054050 | MtrunA17_Chr2g0321461 | 50.909 | 55 | 26 | 1 | 141 | 194 | 45 | 99 | 7.47e-11 | 63.9 |
| Msa1054050 | MtrunA17_Chr1g0198601 | 49.153 | 59 | 29 | 1 | 140 | 197 | 210 | 268 | 8.07e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054050 | AT5G07210.2 | 37.548 | 261 | 112 | 7 | 6 | 217 | 40 | 298 | 1.43e-40 | 155 |
| Msa1054050 | AT3G16857.1 | 34.454 | 238 | 115 | 3 | 1 | 197 | 56 | 293 | 2.93e-40 | 155 |
| Msa1054050 | AT3G16857.2 | 34.454 | 238 | 115 | 3 | 1 | 197 | 56 | 293 | 4.42e-40 | 154 |
| Msa1054050 | AT5G07210.1 | 37.308 | 260 | 112 | 7 | 7 | 217 | 49 | 306 | 7.47e-40 | 153 |
| Msa1054050 | AT3G16857.3 | 35.135 | 222 | 103 | 3 | 17 | 197 | 2 | 223 | 1.44e-38 | 149 |
| Msa1054050 | AT2G01760.1 | 33.478 | 230 | 117 | 6 | 4 | 200 | 33 | 259 | 1.71e-36 | 139 |
| Msa1054050 | AT2G01760.2 | 33.478 | 230 | 117 | 6 | 4 | 200 | 61 | 287 | 1.51e-35 | 137 |
| Msa1054050 | AT2G25180.1 | 35.981 | 214 | 118 | 3 | 6 | 200 | 41 | 254 | 1.03e-34 | 138 |
| Msa1054050 | AT2G27070.1 | 33.103 | 290 | 135 | 9 | 7 | 247 | 44 | 323 | 1.14e-34 | 137 |
| Msa1054050 | AT4G31920.1 | 35.407 | 209 | 122 | 2 | 6 | 204 | 41 | 246 | 3.05e-33 | 133 |
| Msa1054050 | AT5G58080.1 | 30.294 | 340 | 176 | 11 | 6 | 294 | 42 | 371 | 1.48e-30 | 126 |
| Msa1054050 | AT1G67710.1 | 35.135 | 222 | 119 | 4 | 6 | 203 | 35 | 255 | 1.87e-30 | 125 |
| Msa1054050 | AT2G01760.3 | 32.487 | 197 | 97 | 6 | 37 | 200 | 1 | 194 | 7.14e-28 | 114 |
| Msa1054050 | AT5G49240.1 | 31.401 | 207 | 120 | 3 | 6 | 190 | 66 | 272 | 1.61e-26 | 109 |
| Msa1054050 | AT1G67710.2 | 35.106 | 188 | 97 | 4 | 40 | 203 | 4 | 190 | 1.67e-23 | 103 |
| Msa1054050 | AT3G62670.1 | 32.524 | 206 | 121 | 5 | 6 | 193 | 63 | 268 | 3.23e-23 | 102 |
| Msa1054050 | AT1G67710.3 | 35.088 | 171 | 86 | 4 | 57 | 203 | 12 | 181 | 2.14e-18 | 88.2 |
| Msa1054050 | AT5G05090.1 | 31.551 | 187 | 114 | 6 | 129 | 307 | 69 | 249 | 2.60e-18 | 85.5 |
| Msa1054050 | AT5G59570.2 | 38.596 | 114 | 57 | 3 | 97 | 199 | 88 | 199 | 5.16e-18 | 85.1 |
| Msa1054050 | AT5G59570.1 | 38.596 | 114 | 57 | 3 | 97 | 199 | 88 | 199 | 5.16e-18 | 85.1 |
| Msa1054050 | AT3G10760.1 | 50.000 | 68 | 34 | 0 | 130 | 197 | 94 | 161 | 5.95e-18 | 85.5 |
| Msa1054050 | AT2G40970.1 | 53.030 | 66 | 31 | 0 | 132 | 197 | 96 | 161 | 6.41e-18 | 84.0 |
| Msa1054050 | AT3G46640.2 | 51.471 | 68 | 31 | 1 | 132 | 197 | 133 | 200 | 7.55e-18 | 85.1 |
| Msa1054050 | AT3G46640.1 | 51.471 | 68 | 31 | 1 | 132 | 197 | 133 | 200 | 7.55e-18 | 85.1 |
| Msa1054050 | AT3G46640.3 | 51.471 | 68 | 31 | 1 | 132 | 197 | 133 | 200 | 1.32e-17 | 84.3 |
| Msa1054050 | AT5G44190.1 | 62.500 | 56 | 21 | 0 | 138 | 193 | 144 | 199 | 2.14e-16 | 81.6 |
| Msa1054050 | AT5G44190.2 | 62.500 | 56 | 21 | 0 | 138 | 193 | 144 | 199 | 2.27e-16 | 81.3 |
| Msa1054050 | AT4G18020.8 | 37.736 | 106 | 58 | 2 | 97 | 202 | 260 | 357 | 2.51e-14 | 75.9 |
| Msa1054050 | AT4G18020.11 | 37.736 | 106 | 58 | 2 | 97 | 202 | 260 | 357 | 2.51e-14 | 75.9 |
| Msa1054050 | AT4G18020.4 | 37.736 | 106 | 58 | 2 | 97 | 202 | 260 | 357 | 2.51e-14 | 75.9 |
| Msa1054050 | AT4G18020.5 | 37.736 | 106 | 58 | 2 | 97 | 202 | 260 | 357 | 2.51e-14 | 75.9 |
| Msa1054050 | AT4G18020.10 | 37.736 | 106 | 58 | 2 | 97 | 202 | 260 | 357 | 2.51e-14 | 75.9 |
| Msa1054050 | AT4G18020.7 | 37.736 | 106 | 58 | 2 | 97 | 202 | 260 | 357 | 2.51e-14 | 75.9 |
| Msa1054050 | AT4G18020.3 | 37.391 | 115 | 63 | 3 | 88 | 202 | 252 | 357 | 2.57e-14 | 75.9 |
| Msa1054050 | AT4G18020.2 | 37.391 | 115 | 63 | 3 | 88 | 202 | 252 | 357 | 2.57e-14 | 75.9 |
| Msa1054050 | AT4G18020.1 | 37.391 | 115 | 63 | 3 | 88 | 202 | 252 | 357 | 2.57e-14 | 75.9 |
| Msa1054050 | AT4G18020.6 | 37.391 | 115 | 63 | 3 | 88 | 202 | 252 | 357 | 2.57e-14 | 75.9 |
| Msa1054050 | AT4G18020.9 | 37.391 | 115 | 63 | 3 | 88 | 202 | 252 | 357 | 2.57e-14 | 75.9 |
| Msa1054050 | AT2G20570.1 | 59.259 | 54 | 22 | 0 | 140 | 193 | 152 | 205 | 3.28e-14 | 75.1 |
| Msa1054050 | AT2G20570.2 | 60.784 | 51 | 20 | 0 | 143 | 193 | 171 | 221 | 1.68e-13 | 73.2 |
| Msa1054050 | AT3G04450.3 | 52.632 | 57 | 26 | 1 | 138 | 193 | 235 | 291 | 1.26e-11 | 66.2 |
| Msa1054050 | AT3G04450.1 | 52.632 | 57 | 26 | 1 | 138 | 193 | 235 | 291 | 2.10e-11 | 66.6 |
| Msa1054050 | AT3G04450.4 | 52.632 | 57 | 26 | 1 | 138 | 193 | 195 | 251 | 2.27e-11 | 66.2 |
| Msa1054050 | AT3G04450.2 | 52.632 | 57 | 26 | 1 | 138 | 193 | 195 | 251 | 2.27e-11 | 66.2 |
| Msa1054050 | AT5G29000.4 | 50.877 | 57 | 27 | 1 | 138 | 193 | 228 | 284 | 3.82e-11 | 64.7 |
| Msa1054050 | AT3G04030.1 | 52.727 | 55 | 25 | 1 | 141 | 194 | 45 | 99 | 4.07e-11 | 65.5 |
| Msa1054050 | AT3G04030.3 | 52.727 | 55 | 25 | 1 | 141 | 194 | 45 | 99 | 4.44e-11 | 65.1 |
| Msa1054050 | AT5G29000.1 | 50.877 | 57 | 27 | 1 | 138 | 193 | 185 | 241 | 4.55e-11 | 65.1 |
| Msa1054050 | AT5G29000.3 | 50.877 | 57 | 27 | 1 | 138 | 193 | 185 | 241 | 4.55e-11 | 65.1 |
| Msa1054050 | AT5G29000.2 | 50.877 | 57 | 27 | 1 | 138 | 193 | 228 | 284 | 4.57e-11 | 65.5 |
Find 89 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACAATTCTGATTACTTAA+TGG | 0.142693 | 7_2:-25039065 | Msa1054050:CDS |
| GGATTCTATTTCTGATATTA+TGG | 0.186158 | 7_2:-25039254 | Msa1054050:CDS |
| GTAAGAAACAATAACCATTT+TGG | 0.206140 | 7_2:-25039412 | Msa1054050:CDS |
| AAATTCTAACTTTGGATCTT+TGG | 0.211667 | 7_2:-25039473 | Msa1054050:CDS |
| GCTGAAGACTTCAAAGATAT+TGG | 0.226006 | 7_2:-25041308 | Msa1054050:CDS |
| GAACTATGAATAATGGATTA+AGG | 0.229051 | 7_2:-25039351 | Msa1054050:CDS |
| CAATTCCCTTACATACAAAA+AGG | 0.230043 | 7_2:-25039769 | Msa1054050:CDS |
| ACTTACTTTCCAATCCAATT+TGG | 0.246719 | 7_2:+25041069 | None:intergenic |
| ATTGATATTTAATATGCTTT+TGG | 0.251059 | 7_2:+25043302 | None:intergenic |
| CTGCTTGCTATTAACCAAAT+TGG | 0.262572 | 7_2:-25041083 | Msa1054050:CDS |
| AACTTGTGAGGCATAATATT+AGG | 0.274422 | 7_2:+25039445 | None:intergenic |
| AAATGTAGCAAGTCACTTAC+AGG | 0.277878 | 7_2:-25040204 | Msa1054050:intron |
| AGGGTTGGCTCTTCAAGATT+TGG | 0.280377 | 7_2:-25039749 | Msa1054050:CDS |
| GTGACACACTTACTTATTAT+AGG | 0.282733 | 7_2:+25043271 | None:intergenic |
| CAAAGCATGACGAGCATCTT+TGG | 0.286240 | 7_2:+25043405 | None:intergenic |
| CAACATGATGTGTTGGAAAT+TGG | 0.289454 | 7_2:+25039794 | None:intergenic |
| ATCTCAAAGACGCTAGAAAA+TGG | 0.291584 | 7_2:-25041362 | Msa1054050:CDS |
| TTTGGAATTCAGCTGAATAA+TGG | 0.297513 | 7_2:-25039394 | Msa1054050:CDS |
| ACTTACTTATTATAGGTATC+TGG | 0.300133 | 7_2:+25043278 | None:intergenic |
| TATTCAGCTGAATTCCAAAA+TGG | 0.301790 | 7_2:+25039398 | None:intergenic |
| TTAAGAAACAAAAGCTTGTT+TGG | 0.309580 | 7_2:-25041130 | Msa1054050:CDS |
| GGAATTGGAACTATGAATAA+TGG | 0.315352 | 7_2:-25039358 | Msa1054050:CDS |
| GATTCTATTTCTGATATTAT+GGG | 0.320241 | 7_2:-25039253 | Msa1054050:CDS |
| TTGAAGTCTTCAGCACAAAA+AGG | 0.324880 | 7_2:+25041317 | None:intergenic |
| TTCAAGATTTGGAACAAGTT+AGG | 0.330501 | 7_2:-25039738 | Msa1054050:CDS |
| TATACTCAACATAACTTAGA+TGG | 0.353303 | 7_2:-25039163 | Msa1054050:CDS |
| GGCTGTTCCAAAGAAAATTC+TGG | 0.359742 | 7_2:-25040258 | Msa1054050:CDS |
| ACTTGTGAGGCATAATATTA+GGG | 0.374491 | 7_2:+25039446 | None:intergenic |
| GGAGCAGAAATGGTTGGAAT+TGG | 0.379114 | 7_2:-25039373 | Msa1054050:CDS |
| TTTCATCTGGTGGGAATGAA+TGG | 0.380354 | 7_2:-25043334 | Msa1054050:CDS |
| GGTTTGGTTCAAGGAGGGTT+TGG | 0.385385 | 7_2:-25039280 | Msa1054050:CDS |
| CTGAAGACTTCAAAGATATT+GGG | 0.389220 | 7_2:-25041307 | Msa1054050:CDS |
| TGCTATTAACCAAATTGGAT+TGG | 0.390260 | 7_2:-25041078 | Msa1054050:CDS |
| CGTTATTGCAGAATTTCATC+TGG | 0.397811 | 7_2:-25043347 | Msa1054050:CDS |
| AACTATGAATAATGGATTAA+GGG | 0.410252 | 7_2:-25039350 | Msa1054050:CDS |
| TAGAGGTGAACAAGGATTGA+TGG | 0.418771 | 7_2:-25039569 | Msa1054050:CDS |
| GGCCATGATCAAAACAGGTT+TGG | 0.418831 | 7_2:-25039670 | Msa1054050:CDS |
| CTGCGAGATGTTGCAGAGAA+AGG | 0.423104 | 7_2:-25039997 | Msa1054050:CDS |
| GTGTTGGAAATTGGTTGAAA+TGG | 0.423793 | 7_2:+25039803 | None:intergenic |
| AGATATTGGGAAATATGTTA+TGG | 0.426061 | 7_2:-25041294 | Msa1054050:CDS |
| GCTGAATAATGGAGCAGAAA+TGG | 0.428747 | 7_2:-25039383 | Msa1054050:CDS |
| CAGTGATGTCTGAAGACAAT+AGG | 0.437039 | 7_2:-25041394 | Msa1054050:CDS |
| GGTTCAAGGAGGGTTTGGTC+TGG | 0.452214 | 7_2:-25039275 | Msa1054050:CDS |
| ATAGTGGCCATGATCAAAAC+AGG | 0.454391 | 7_2:-25039675 | Msa1054050:CDS |
| AGCGTCTTTGAGATTAAACT+TGG | 0.469430 | 7_2:+25041371 | None:intergenic |
| CTTGAATATCTCTCTGTCCT+TGG | 0.475871 | 7_2:+25041156 | None:intergenic |
| GAGTCATTTGCTTGAAAACA+TGG | 0.478495 | 7_2:+25039628 | None:intergenic |
| GATTTGGAACAAGTTAGGCT+TGG | 0.484973 | 7_2:-25039733 | Msa1054050:CDS |
| AACTTAGATGGAAATGTTGT+GGG | 0.487865 | 7_2:-25039151 | Msa1054050:CDS |
| GCGGGATCAATTAATAATGA+AGG | 0.491320 | 7_2:-25039208 | Msa1054050:CDS |
| TAGTGCTACTTTCACTAATG+AGG | 0.497764 | 7_2:-25039110 | Msa1054050:CDS |
| GTTGCAGAGAAAGGAATGGT+TGG | 0.508048 | 7_2:-25039988 | Msa1054050:CDS |
| TAGGCTTGGAAAATCAAAGT+TGG | 0.508790 | 7_2:-25039719 | Msa1054050:CDS |
| TAACTTAGATGGAAATGTTG+TGG | 0.515281 | 7_2:-25039152 | Msa1054050:CDS |
| TCTGATATTATGGGTGGGAG+TGG | 0.524002 | 7_2:-25039244 | Msa1054050:CDS |
| GACATTAGAAACCAGAATCA+TGG | 0.525782 | 7_2:-25039502 | Msa1054050:CDS |
| ACTATTCTCCACAACAGCAT+TGG | 0.529555 | 7_2:+25039693 | None:intergenic |
| TCTATTTCTGATATTATGGG+TGG | 0.531610 | 7_2:-25039250 | Msa1054050:CDS |
| ATTGCAGAATTTCATCTGGT+GGG | 0.533922 | 7_2:-25043343 | Msa1054050:CDS |
| ACCACTCTTCAAGAACATGA+AGG | 0.537021 | 7_2:-25043382 | Msa1054050:CDS |
| CGGAAGACTTGATGCAAACA+TGG | 0.539513 | 7_2:+25039939 | None:intergenic |
| GGCATGTCTCACAGAGCTCT+AGG | 0.548634 | 7_2:-25039964 | Msa1054050:CDS |
| CTATTTCTGATATTATGGGT+GGG | 0.552442 | 7_2:-25039249 | Msa1054050:CDS |
| TATTGCAGAATTTCATCTGG+TGG | 0.554479 | 7_2:-25043344 | Msa1054050:CDS |
| AATAATGGAGCAGAAATGGT+TGG | 0.555811 | 7_2:-25039379 | Msa1054050:CDS |
| CATTTGCTTGAAAACATGGA+AGG | 0.562150 | 7_2:+25039632 | None:intergenic |
| AATTTGGTTTGGTTCAAGGA+GGG | 0.563542 | 7_2:-25039285 | Msa1054050:CDS |
| TCTATATGATGAAAATCTAG+TGG | 0.565614 | 7_2:+25039588 | None:intergenic |
| GTTTGCAAATATTGAAGTGT+TGG | 0.565873 | 7_2:+25039865 | None:intergenic |
| AATGCTGTTGTGGAGAATAG+TGG | 0.567974 | 7_2:-25039691 | Msa1054050:CDS |
| ATTTCTCTGATCACAGAACT+CGG | 0.568518 | 7_2:+25039919 | None:intergenic |
| GCCTTCATGTTCTTGAAGAG+TGG | 0.572193 | 7_2:+25043381 | None:intergenic |
| GTTGGAAGCCAATGCTGTTG+TGG | 0.573882 | 7_2:-25039701 | Msa1054050:CDS |
| GCAGAGAAAGGAATGGTTGG+AGG | 0.578705 | 7_2:-25039985 | Msa1054050:CDS |
| ACTATGAATAATGGATTAAG+GGG | 0.581064 | 7_2:-25039349 | Msa1054050:CDS |
| GCAAATGACTCATTTGATGA+TGG | 0.582611 | 7_2:-25039616 | Msa1054050:CDS |
| ACTTCAATATTTGCAAACAC+AGG | 0.588080 | 7_2:-25039860 | Msa1054050:CDS |
| AAATTTGGTTTGGTTCAAGG+AGG | 0.591953 | 7_2:-25039286 | Msa1054050:CDS |
| AGCATGACGAGCATCTTTGG+CGG | 0.594814 | 7_2:+25043408 | None:intergenic |
| AATTGGTCAACATGATGTGT+TGG | 0.598362 | 7_2:+25039787 | None:intergenic |
| TCATCATATAGAGGTGAACA+AGG | 0.599585 | 7_2:-25039577 | Msa1054050:CDS |
| AGAAAGAGTAAAGAATGCCA+AGG | 0.613976 | 7_2:-25041173 | Msa1054050:CDS |
| AGTGGAAGAGAGTTTCTAGC+GGG | 0.618710 | 7_2:-25039226 | Msa1054050:CDS |
| ACACAGGCATATCAAACAAG+AGG | 0.645847 | 7_2:-25039844 | Msa1054050:CDS |
| AAAGTCTTCATACCTCGTCA+CGG | 0.650241 | 7_2:+25039026 | None:intergenic |
| ACATCAGAAGTAAACTTGTG+AGG | 0.669577 | 7_2:+25039433 | None:intergenic |
| TGACAAGAATCTCCGTGACG+AGG | 0.680873 | 7_2:-25039038 | Msa1054050:CDS |
| AGATGTTGCAGAGAAAGGAA+TGG | 0.689031 | 7_2:-25039992 | Msa1054050:CDS |
| GAGTGGAAGAGAGTTTCTAG+CGG | 0.748562 | 7_2:-25039227 | Msa1054050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAATTTTAATTTTTTAA+AGG | - | chr7_2:25040227-25040246 | Msa1054050:CDS | 0.0% |
| !!! | TAAAATTTTAATTTTTTAAA+GGG | - | chr7_2:25040228-25040247 | Msa1054050:CDS | 0.0% |
| !!! | ATTGAATTTCTAAAATAAAT+GGG | + | chr7_2:25040597-25040616 | None:intergenic | 10.0% |
| !!! | AATTGAATTTCTAAAATAAA+TGG | + | chr7_2:25040598-25040617 | None:intergenic | 10.0% |
| !!! | AAAAATATTTTTCTTATGAA+AGG | - | chr7_2:25041601-25041620 | Msa1054050:intron | 10.0% |
| !!! | ATATTATTTTAAAATGATAG+TGG | + | chr7_2:25041810-25041829 | None:intergenic | 10.0% |
| !! | TATTATTAGTATATTTACTT+AGG | + | chr7_2:25041954-25041973 | None:intergenic | 10.0% |
| !! | AATATTAAAATTTGGATAAT+AGG | + | chr7_2:25042181-25042200 | None:intergenic | 10.0% |
| !! | GTGTATTAAATATTAAAATT+TGG | + | chr7_2:25042189-25042208 | None:intergenic | 10.0% |
| !!! | TTATTCACAAAATGTTTTTA+AGG | + | chr7_2:25039073-25039092 | None:intergenic | 15.0% |
| !!! | AAATATATTTTTGCATGTTA+CGG | + | chr7_2:25039130-25039149 | None:intergenic | 15.0% |
| !!! | ATTGATATTTAATATGCTTT+TGG | + | chr7_2:25039340-25039359 | None:intergenic | 15.0% |
| !!! | GTCTATTTTAAATAACTTTT+CGG | + | chr7_2:25040679-25040698 | None:intergenic | 15.0% |
| !!! | TCATTAATTCTTTAAAAATG+TGG | - | chr7_2:25040710-25040729 | Msa1054050:intron | 15.0% |
| !!! | TATAATTATTTTGTGTCATT+TGG | - | chr7_2:25040751-25040770 | Msa1054050:intron | 15.0% |
| !!! | CATTTAATTTGAGTTAATTA+TGG | - | chr7_2:25042104-25042123 | Msa1054050:intron | 15.0% |
| !!! | AATATATTTTTGCATGTTAC+GGG | + | chr7_2:25039129-25039148 | None:intergenic | 20.0% |
| !! | TGCAAAAATATATTTCATTG+TGG | - | chr7_2:25039135-25039154 | Msa1054050:CDS | 20.0% |
| !! | TTTAGATCAATTTATTCACA+CGG | - | chr7_2:25039785-25039804 | Msa1054050:CDS | 20.0% |
| !! | ATGAAGAGATTATAAATTAG+AGG | - | chr7_2:25039933-25039952 | Msa1054050:CDS | 20.0% |
| !! | GTAAATTAAAAGTTCAATGT+TGG | - | chr7_2:25040152-25040171 | Msa1054050:intron | 20.0% |
| !!! | GATATATGTTTAAAATACGA+TGG | - | chr7_2:25040269-25040288 | Msa1054050:intron | 20.0% |
| !!! | TATTTTTCATGAAAATCGTA+AGG | + | chr7_2:25040635-25040654 | None:intergenic | 20.0% |
| !!! | TTAAAAATGTGGTCAAATTT+TGG | - | chr7_2:25040721-25040740 | Msa1054050:intron | 20.0% |
| !! | AATAAGCTTAAAGAACTATA+TGG | + | chr7_2:25041104-25041123 | None:intergenic | 20.0% |
| !!! | ATTTTACAACCATATCATAT+GGG | - | chr7_2:25041838-25041857 | Msa1054050:intron | 20.0% |
| !!! | GATAATAGGTAATTTGTTTT+TGG | + | chr7_2:25042167-25042186 | None:intergenic | 20.0% |
| !!! | TACCCTAAAAATTAAGTTTT+TGG | - | chr7_2:25042226-25042245 | Msa1054050:intron | 20.0% |
| !!! | AGCCAAAAACTTAATTTTTA+GGG | + | chr7_2:25042231-25042250 | None:intergenic | 20.0% |
| !!! | TTAACAAGCGATTTTAAATT+TGG | - | chr7_2:25043113-25043132 | Msa1054050:intron | 20.0% |
| !!! | AACTATGAATAATGGATTAA+GGG | - | chr7_2:25043289-25043308 | Msa1054050:CDS | 20.0% |
| !!! | GATTCTATTTCTGATATTAT+GGG | - | chr7_2:25043386-25043405 | Msa1054050:CDS | 20.0% |
| !!! | ATGCATTTGATTTTGTATTC+AGG | - | chr7_2:25039033-25039052 | Msa1054050:CDS | 25.0% |
| ! | AAAGAATTTAACGAGGTATA+AGG | + | chr7_2:25039104-25039123 | None:intergenic | 25.0% |
| ! | ACTTACTTATTATAGGTATC+TGG | + | chr7_2:25039364-25039383 | None:intergenic | 25.0% |
| !!! | TGCAATTGTTTTTCTTTGTA+TGG | - | chr7_2:25039412-25039431 | Msa1054050:CDS | 25.0% |
| !!! | TTGTTTTTCTTTGTATGGAT+AGG | - | chr7_2:25039417-25039436 | Msa1054050:CDS | 25.0% |
| !! | TGTTTTTCTTTGTATGGATA+GGG | - | chr7_2:25039418-25039437 | Msa1054050:CDS | 25.0% |
| ! | TTATTATGCAAACATGCTTA+AGG | - | chr7_2:25039467-25039486 | Msa1054050:CDS | 25.0% |
| ! | TTTATAGTTCACGAATAGTT+CGG | - | chr7_2:25039646-25039665 | Msa1054050:CDS | 25.0% |
| ! | TGATCTAAACATGACAATAT+TGG | + | chr7_2:25039774-25039793 | None:intergenic | 25.0% |
| !!! | ATAATGGATAAAAAGAAGGT+AGG | + | chr7_2:25039857-25039876 | None:intergenic | 25.0% |
| !!! | AGTGATAATGGATAAAAAGA+AGG | + | chr7_2:25039861-25039880 | None:intergenic | 25.0% |
| ! | TTAGAGTTAATCAGTGATAA+TGG | + | chr7_2:25039873-25039892 | None:intergenic | 25.0% |
| !! | ATTGTTTCCTTTTCATTTTC+TGG | + | chr7_2:25040000-25040019 | None:intergenic | 25.0% |
| !! | AGGAGGGTAAATTAATATTT+TGG | - | chr7_2:25040121-25040140 | Msa1054050:intron | 25.0% |
| !! | GGAGGGTAAATTAATATTTT+GGG | - | chr7_2:25040122-25040141 | Msa1054050:intron | 25.0% |
| !!! | TTTTTTAAAGGGAAGTGAAA+AGG | - | chr7_2:25040239-25040258 | Msa1054050:CDS | 25.0% |
| ! | GTGTATATATATAATCGAGT+TGG | - | chr7_2:25040368-25040387 | Msa1054050:intron | 25.0% |
| !!! | CTTAATTTTTAGCTCAAGTT+CGG | - | chr7_2:25040451-25040470 | Msa1054050:intron | 25.0% |
| !! | TGTCATTTGGATAGATAATT+TGG | - | chr7_2:25040764-25040783 | Msa1054050:intron | 25.0% |
| !!! | AGACATTATTTGTGTCATTT+TGG | - | chr7_2:25040865-25040884 | Msa1054050:intron | 25.0% |
| ! | AGATATTGGGAAATATGTTA+TGG | - | chr7_2:25041345-25041364 | Msa1054050:CDS | 25.0% |
| !! | TTAAGAAACAAAAGCTTGTT+TGG | - | chr7_2:25041509-25041528 | Msa1054050:intron | 25.0% |
| !! | CATTTTACAACCATATCATA+TGG | - | chr7_2:25041837-25041856 | Msa1054050:intron | 25.0% |
| !! | GAGCCAAAAACTTAATTTTT+AGG | + | chr7_2:25042232-25042251 | None:intergenic | 25.0% |
| !! | TTATATTTTCCCTAATTCAG+AGG | - | chr7_2:25042360-25042379 | Msa1054050:intron | 25.0% |
| ! | AATTCCCTTACATACAAAAA+GGG | - | chr7_2:25042871-25042890 | Msa1054050:intron | 25.0% |
| ! | TCTATATGATGAAAATCTAG+TGG | + | chr7_2:25043054-25043073 | None:intergenic | 25.0% |
| !! | ACTAGATTTTCATCATATAG+AGG | - | chr7_2:25043053-25043072 | Msa1054050:intron | 25.0% |
| !! | AATTTTTAACACCATGATTC+TGG | + | chr7_2:25043151-25043170 | None:intergenic | 25.0% |
| ! | GGTGTTAAAAATTCTAACTT+TGG | - | chr7_2:25043158-25043177 | Msa1054050:intron | 25.0% |
| ! | AAATTCTAACTTTGGATCTT+TGG | - | chr7_2:25043166-25043185 | Msa1054050:intron | 25.0% |
| !! | GTAAGAAACAATAACCATTT+TGG | - | chr7_2:25043227-25043246 | Msa1054050:intron | 25.0% |
| !!! | GAACTATGAATAATGGATTA+AGG | - | chr7_2:25043288-25043307 | Msa1054050:CDS | 25.0% |
| !!! | ACTATGAATAATGGATTAAG+GGG | - | chr7_2:25043290-25043309 | Msa1054050:CDS | 25.0% |
| ! | TCGTTTGTGAATGAAAAATT+TGG | - | chr7_2:25043338-25043357 | Msa1054050:CDS | 25.0% |
| ! | TGTGAATGAAAAATTTGGTT+TGG | - | chr7_2:25043343-25043362 | Msa1054050:CDS | 25.0% |
| !!! | GGATTCTATTTCTGATATTA+TGG | - | chr7_2:25043385-25043404 | Msa1054050:CDS | 25.0% |
| ! | TATACTCAACATAACTTAGA+TGG | - | chr7_2:25043476-25043495 | Msa1054050:intron | 25.0% |
| ! | CAACAATTCTGATTACTTAA+TGG | - | chr7_2:25043574-25043593 | Msa1054050:intron | 25.0% |
| GTGACACACTTACTTATTAT+AGG | + | chr7_2:25039371-25039390 | None:intergenic | 30.0% | |
| TAAATTGATAGGTGCACTTA+GGG | - | chr7_2:25039501-25039520 | Msa1054050:CDS | 30.0% | |
| ! | ATGTTGGTGGAAATAAACAA+TGG | + | chr7_2:25039829-25039848 | None:intergenic | 30.0% |
| AGTGAAACCAGAAAATGAAA+AGG | - | chr7_2:25039990-25040009 | Msa1054050:CDS | 30.0% | |
| ! | TCAAGTCACTAGTCTAAATT+TGG | - | chr7_2:25040035-25040054 | Msa1054050:intron | 30.0% |
| GGAGAAAATGAAGAATGATT+TGG | - | chr7_2:25040056-25040075 | Msa1054050:intron | 30.0% | |
| ! | GGTTATCTTTTCATTCATAG+TGG | - | chr7_2:25040096-25040115 | Msa1054050:intron | 30.0% |
| !! | TCTTTTCATTCATAGTGGAA+AGG | - | chr7_2:25040101-25040120 | Msa1054050:intron | 30.0% |
| ! | TATATATAGTTCGACTCGTT+TGG | + | chr7_2:25040402-25040421 | None:intergenic | 30.0% |
| GACAATTATCTTGTTGAACT+TGG | + | chr7_2:25040494-25040513 | None:intergenic | 30.0% | |
| GGTCAAACTTAAAATTACTG+AGG | + | chr7_2:25040658-25040677 | None:intergenic | 30.0% | |
| ATAATGCACAAGAACTAAAG+TGG | + | chr7_2:25041184-25041203 | None:intergenic | 30.0% | |
| CTGAAGACTTCAAAGATATT+GGG | - | chr7_2:25041332-25041351 | Msa1054050:CDS | 30.0% | |
| ! | CAATGCTTCTTTTTGTTCTT+AGG | + | chr7_2:25041442-25041461 | None:intergenic | 30.0% |
| ! | AGAAACATTTTGTGGAGATA+AGG | + | chr7_2:25041538-25041557 | None:intergenic | 30.0% |
| TGCTATTAACCAAATTGGAT+TGG | - | chr7_2:25041561-25041580 | Msa1054050:intron | 30.0% | |
| ACTTACTTTCCAATCCAATT+TGG | + | chr7_2:25041573-25041592 | None:intergenic | 30.0% | |
| TACTTCTTCCAACCATAAAT+CGG | - | chr7_2:25041668-25041687 | Msa1054050:intron | 30.0% | |
| TAGACAATACCGTAGAAAAA+TGG | + | chr7_2:25041699-25041718 | None:intergenic | 30.0% | |
| ! | GTTTAACTTTGTAACCTCAA+GGG | + | chr7_2:25041877-25041896 | None:intergenic | 30.0% |
| ! | AGTTTAACTTTGTAACCTCA+AGG | + | chr7_2:25041878-25041897 | None:intergenic | 30.0% |
| ! | ATGATCTCCAGAATTTTCTT+TGG | + | chr7_2:25042391-25042410 | None:intergenic | 30.0% |
| GTTTGCAAATATTGAAGTGT+TGG | + | chr7_2:25042777-25042796 | None:intergenic | 30.0% | |
| ACTTCAATATTTGCAAACAC+AGG | - | chr7_2:25042779-25042798 | Msa1054050:intron | 30.0% | |
| ! | CTTTTTGTATGTAAGGGAAT+TGG | + | chr7_2:25042872-25042891 | None:intergenic | 30.0% |
| CAATTCCCTTACATACAAAA+AGG | - | chr7_2:25042870-25042889 | Msa1054050:intron | 30.0% | |
| ! | TTCAAGATTTGGAACAAGTT+AGG | - | chr7_2:25042901-25042920 | Msa1054050:intron | 30.0% |
| ACTTGTGAGGCATAATATTA+GGG | + | chr7_2:25043196-25043215 | None:intergenic | 30.0% | |
| AACTTGTGAGGCATAATATT+AGG | + | chr7_2:25043197-25043216 | None:intergenic | 30.0% | |
| TATTCAGCTGAATTCCAAAA+TGG | + | chr7_2:25043244-25043263 | None:intergenic | 30.0% | |
| ! | TTTGGAATTCAGCTGAATAA+TGG | - | chr7_2:25043245-25043264 | Msa1054050:intron | 30.0% |
| GGAATTGGAACTATGAATAA+TGG | - | chr7_2:25043281-25043300 | Msa1054050:intron | 30.0% | |
| !! | GAAAAATTTGGTTTGGTTCA+AGG | - | chr7_2:25043350-25043369 | Msa1054050:CDS | 30.0% |
| !! | TCTATTTCTGATATTATGGG+TGG | - | chr7_2:25043389-25043408 | Msa1054050:CDS | 30.0% |
| !! | CTATTTCTGATATTATGGGT+GGG | - | chr7_2:25043390-25043409 | Msa1054050:CDS | 30.0% |
| TAACTTAGATGGAAATGTTG+TGG | - | chr7_2:25043487-25043506 | Msa1054050:intron | 30.0% | |
| AACTTAGATGGAAATGTTGT+GGG | - | chr7_2:25043488-25043507 | Msa1054050:intron | 30.0% | |
| ACGGGAAAAAGAATTTAACG+AGG | + | chr7_2:25039111-25039130 | None:intergenic | 35.0% | |
| CGTTATTGCAGAATTTCATC+TGG | - | chr7_2:25039292-25039311 | Msa1054050:CDS | 35.0% | |
| TATTGCAGAATTTCATCTGG+TGG | - | chr7_2:25039295-25039314 | Msa1054050:CDS | 35.0% | |
| ATTGCAGAATTTCATCTGGT+GGG | - | chr7_2:25039296-25039315 | Msa1054050:CDS | 35.0% | |
| TGCAAACATGCTTAAGGATT+TGG | - | chr7_2:25039473-25039492 | Msa1054050:CDS | 35.0% | |
| GCAAACATGCTTAAGGATTT+GGG | - | chr7_2:25039474-25039493 | Msa1054050:CDS | 35.0% | |
| ATTTGGGCTCCTAAATTGAT+AGG | - | chr7_2:25039490-25039509 | Msa1054050:CDS | 35.0% | |
| CTAAGTGCACCTATCAATTT+AGG | + | chr7_2:25039502-25039521 | None:intergenic | 35.0% | |
| CTAAATTGATAGGTGCACTT+AGG | - | chr7_2:25039500-25039519 | Msa1054050:CDS | 35.0% | |
| AAGAAGGTAGGAATGAATGT+TGG | + | chr7_2:25039845-25039864 | None:intergenic | 35.0% | |
| CACTAGTGACTTGAATTCAT+TGG | + | chr7_2:25039974-25039993 | None:intergenic | 35.0% | |
| ! | AGAATGATTTGGAGAGATCA+AGG | - | chr7_2:25040067-25040086 | Msa1054050:intron | 35.0% |
| ! | TTTCATTCATAGTGGAAAGG+AGG | - | chr7_2:25040104-25040123 | Msa1054050:intron | 35.0% |
| ! | TTCATTCATAGTGGAAAGGA+GGG | - | chr7_2:25040105-25040124 | Msa1054050:intron | 35.0% |
| !!! | GTTTCGAACTATTTTCGAGT+TGG | - | chr7_2:25040521-25040540 | Msa1054050:intron | 35.0% |
| !!! | GAACTATTTTCGAGTTGGTT+CGG | - | chr7_2:25040526-25040545 | Msa1054050:intron | 35.0% |
| !! | AGCGTCTTTGAGATTAAACT+TGG | + | chr7_2:25041271-25041290 | None:intergenic | 35.0% |
| ATCTCAAAGACGCTAGAAAA+TGG | - | chr7_2:25041277-25041296 | Msa1054050:CDS | 35.0% | |
| TTGAAGTCTTCAGCACAAAA+AGG | + | chr7_2:25041325-25041344 | None:intergenic | 35.0% | |
| GCTGAAGACTTCAAAGATAT+TGG | - | chr7_2:25041331-25041350 | Msa1054050:CDS | 35.0% | |
| AGAAAGAGTAAAGAATGCCA+AGG | - | chr7_2:25041466-25041485 | Msa1054050:intron | 35.0% | |
| ! | TAGCAAGCAGAAACATTTTG+TGG | + | chr7_2:25041546-25041565 | None:intergenic | 35.0% |
| !! | CTGCTTGCTATTAACCAAAT+TGG | - | chr7_2:25041556-25041575 | Msa1054050:intron | 35.0% |
| ! | CAAGTATGTTGCATTGATAG+TGG | + | chr7_2:25041748-25041767 | None:intergenic | 35.0% |
| CTATCAATGCAACATACTTG+AGG | - | chr7_2:25041748-25041767 | Msa1054050:intron | 35.0% | |
| TAAACTCTTTCCAGTTAGCT+TGG | - | chr7_2:25041892-25041911 | Msa1054050:intron | 35.0% | |
| AGGCGTATAAACAATGATAG+TGG | + | chr7_2:25041934-25041953 | None:intergenic | 35.0% | |
| ! | ACATTTTCTCTGGTCAAGTT+TGG | + | chr7_2:25042421-25042440 | None:intergenic | 35.0% |
| AAATGTAGCAAGTCACTTAC+AGG | - | chr7_2:25042435-25042454 | Msa1054050:intron | 35.0% | |
| ATTTCTCTGATCACAGAACT+CGG | + | chr7_2:25042723-25042742 | None:intergenic | 35.0% | |
| GTGTTGGAAATTGGTTGAAA+TGG | + | chr7_2:25042839-25042858 | None:intergenic | 35.0% | |
| CAACATGATGTGTTGGAAAT+TGG | + | chr7_2:25042848-25042867 | None:intergenic | 35.0% | |
| AATTGGTCAACATGATGTGT+TGG | + | chr7_2:25042855-25042874 | None:intergenic | 35.0% | |
| ! | CCAACCCTTTTTGTATGTAA+GGG | + | chr7_2:25042878-25042897 | None:intergenic | 35.0% |
| TAGGCTTGGAAAATCAAAGT+TGG | - | chr7_2:25042920-25042939 | Msa1054050:intron | 35.0% | |
| !!! | TTCCAAACCTGTTTTGATCA+TGG | + | chr7_2:25042974-25042993 | None:intergenic | 35.0% |
| CATTTGCTTGAAAACATGGA+AGG | + | chr7_2:25043010-25043029 | None:intergenic | 35.0% | |
| GAGTCATTTGCTTGAAAACA+TGG | + | chr7_2:25043014-25043033 | None:intergenic | 35.0% | |
| GCAAATGACTCATTTGATGA+TGG | - | chr7_2:25043023-25043042 | Msa1054050:intron | 35.0% | |
| TCATCATATAGAGGTGAACA+AGG | - | chr7_2:25043062-25043081 | Msa1054050:intron | 35.0% | |
| GACATTAGAAACCAGAATCA+TGG | - | chr7_2:25043137-25043156 | Msa1054050:intron | 35.0% | |
| ACATCAGAAGTAAACTTGTG+AGG | + | chr7_2:25043209-25043228 | None:intergenic | 35.0% | |
| ! | AATAATGGAGCAGAAATGGT+TGG | - | chr7_2:25043260-25043279 | Msa1054050:intron | 35.0% |
| !! | AAATTTGGTTTGGTTCAAGG+AGG | - | chr7_2:25043353-25043372 | Msa1054050:CDS | 35.0% |
| !! | AATTTGGTTTGGTTCAAGGA+GGG | - | chr7_2:25043354-25043373 | Msa1054050:CDS | 35.0% |
| GCGGGATCAATTAATAATGA+AGG | - | chr7_2:25043431-25043450 | Msa1054050:intron | 35.0% | |
| !! | TAGTGCTACTTTCACTAATG+AGG | - | chr7_2:25043529-25043548 | Msa1054050:intron | 35.0% |
| ACCACTCTTCAAGAACATGA+AGG | - | chr7_2:25039257-25039276 | Msa1054050:CDS | 40.0% | |
| TTTCATCTGGTGGGAATGAA+TGG | - | chr7_2:25039305-25039324 | Msa1054050:CDS | 40.0% | |
| AGTTCACGAATAGTTCGGTT+CGG | - | chr7_2:25039651-25039670 | Msa1054050:CDS | 40.0% | |
| AAGGTAGGAATGAATGTTGG+TGG | + | chr7_2:25039842-25039861 | None:intergenic | 40.0% | |
| TTGGAGAGATCAAGGATATG+AGG | - | chr7_2:25040075-25040094 | Msa1054050:intron | 40.0% | |
| TAATGCCTACACGTTGGAAT+TGG | - | chr7_2:25040181-25040200 | Msa1054050:intron | 40.0% | |
| TCTTTCCAATTCCAACGTGT+AGG | + | chr7_2:25040189-25040208 | None:intergenic | 40.0% | |
| TGGAATTGGAAAGACGTGTA+TGG | - | chr7_2:25040195-25040214 | Msa1054050:intron | 40.0% | |
| ! | CACTTTGTTTAGTGCACCTA+GGG | + | chr7_2:25040563-25040582 | None:intergenic | 40.0% |
| ! | ACACTTTGTTTAGTGCACCT+AGG | + | chr7_2:25040564-25040583 | None:intergenic | 40.0% |
| TGCACAAGAACTAAAGTGGT+GGG | + | chr7_2:25041180-25041199 | None:intergenic | 40.0% | |
| ATGCACAAGAACTAAAGTGG+TGG | + | chr7_2:25041181-25041200 | None:intergenic | 40.0% | |
| CAGTGATGTCTGAAGACAAT+AGG | - | chr7_2:25041245-25041264 | Msa1054050:intron | 40.0% | |
| CTTGAATATCTCTCTGTCCT+TGG | + | chr7_2:25041486-25041505 | None:intergenic | 40.0% | |
| ! | AAAATGGTGCAGCCGATTTA+TGG | + | chr7_2:25041683-25041702 | None:intergenic | 40.0% |
| AGTGCAGATCCCATATGATA+TGG | + | chr7_2:25041850-25041869 | None:intergenic | 40.0% | |
| GTATCCTCTTCAAACTCAAG+TGG | - | chr7_2:25042060-25042079 | Msa1054050:intron | 40.0% | |
| ACATCCACTTGAGTTTGAAG+AGG | + | chr7_2:25042067-25042086 | None:intergenic | 40.0% | |
| TTGGAACAGCCTCTGAATTA+GGG | + | chr7_2:25042372-25042391 | None:intergenic | 40.0% | |
| ! | TTTGGAACAGCCTCTGAATT+AGG | + | chr7_2:25042373-25042392 | None:intergenic | 40.0% |
| GGCTGTTCCAAAGAAAATTC+TGG | - | chr7_2:25042381-25042400 | Msa1054050:intron | 40.0% | |
| !!! | GTGACTTGCTACATTTTCTC+TGG | + | chr7_2:25042431-25042450 | None:intergenic | 40.0% |
| AGATGTTGCAGAGAAAGGAA+TGG | - | chr7_2:25042647-25042666 | Msa1054050:intron | 40.0% | |
| ACACAGGCATATCAAACAAG+AGG | - | chr7_2:25042795-25042814 | Msa1054050:intron | 40.0% | |
| CCCTTACATACAAAAAGGGT+TGG | - | chr7_2:25042875-25042894 | Msa1054050:intron | 40.0% | |
| ! | GCCAACCCTTTTTGTATGTA+AGG | + | chr7_2:25042879-25042898 | None:intergenic | 40.0% |
| ! | GATTTGGAACAAGTTAGGCT+TGG | - | chr7_2:25042906-25042925 | Msa1054050:intron | 40.0% |
| ACTATTCTCCACAACAGCAT+TGG | + | chr7_2:25042949-25042968 | None:intergenic | 40.0% | |
| AATGCTGTTGTGGAGAATAG+TGG | - | chr7_2:25042948-25042967 | Msa1054050:intron | 40.0% | |
| ATAGTGGCCATGATCAAAAC+AGG | - | chr7_2:25042964-25042983 | Msa1054050:intron | 40.0% | |
| TAGAGGTGAACAAGGATTGA+TGG | - | chr7_2:25043070-25043089 | Msa1054050:intron | 40.0% | |
| ! | GCTGAATAATGGAGCAGAAA+TGG | - | chr7_2:25043256-25043275 | Msa1054050:intron | 40.0% |
| CAAAGCATGACGAGCATCTT+TGG | + | chr7_2:25039237-25039256 | None:intergenic | 45.0% | |
| GCCTTCATGTTCTTGAAGAG+TGG | + | chr7_2:25039261-25039280 | None:intergenic | 45.0% | |
| ! | CGACTCGACTCGATAAGAAT+TGG | - | chr7_2:25039562-25039581 | Msa1054050:CDS | 45.0% |
| AGACTGTAATGCCTACACGT+TGG | - | chr7_2:25040175-25040194 | Msa1054050:intron | 45.0% | |
| TAGCTCAAGTTCGGCTCATT+TGG | - | chr7_2:25040460-25040479 | Msa1054050:intron | 45.0% | |
| !! | TCGGCTGCACCATTTTTCTA+CGG | - | chr7_2:25041687-25041706 | Msa1054050:intron | 45.0% |
| ! | GATAGTGGTGTTTGTGCACT+AGG | + | chr7_2:25041919-25041938 | None:intergenic | 45.0% |
| GTTGCAGAGAAAGGAATGGT+TGG | - | chr7_2:25042651-25042670 | Msa1054050:intron | 45.0% | |
| CGGAAGACTTGATGCAAACA+TGG | + | chr7_2:25042703-25042722 | None:intergenic | 45.0% | |
| !! | AGGGTTGGCTCTTCAAGATT+TGG | - | chr7_2:25042890-25042909 | Msa1054050:intron | 45.0% |
| GGCCATGATCAAAACAGGTT+TGG | - | chr7_2:25042969-25042988 | Msa1054050:intron | 45.0% | |
| GGAGCAGAAATGGTTGGAAT+TGG | - | chr7_2:25043266-25043285 | Msa1054050:intron | 45.0% | |
| TCTGATATTATGGGTGGGAG+TGG | - | chr7_2:25043395-25043414 | Msa1054050:CDS | 45.0% | |
| ! | GAGTGGAAGAGAGTTTCTAG+CGG | - | chr7_2:25043412-25043431 | Msa1054050:CDS | 45.0% |
| !! | AGTGGAAGAGAGTTTCTAGC+GGG | - | chr7_2:25043413-25043432 | Msa1054050:CDS | 45.0% |
| !! | AAATAAAAAAATAAAGTTTA+AGG | - | chr7_2:25040319-25040338 | Msa1054050:intron | 5.0% |
| !!! | TATTTTGATAAATAATTTAA+AGG | - | chr7_2:25040898-25040917 | Msa1054050:intron | 5.0% |
| !!! | ATTTTGATAAATAATTTAAA+GGG | - | chr7_2:25040899-25040918 | Msa1054050:intron | 5.0% |
| !!! | TCATTTTAAAATAATATTAA+TGG | - | chr7_2:25041813-25041832 | Msa1054050:intron | 5.0% |
| AGCATGACGAGCATCTTTGG+CGG | + | chr7_2:25039234-25039253 | None:intergenic | 50.0% | |
| TTGATAGGTGCACTTAGGGC+TGG | - | chr7_2:25039505-25039524 | Msa1054050:CDS | 50.0% | |
| !! | ATAGTTCGGTTCGGCTCGTT+AGG | - | chr7_2:25039660-25039679 | Msa1054050:CDS | 50.0% |
| TTGTTTAGTGCACCTAGGGC+TGG | + | chr7_2:25040559-25040578 | None:intergenic | 50.0% | |
| ! | TGGTGCAGCCGATTTATGGT+TGG | + | chr7_2:25041679-25041698 | None:intergenic | 50.0% |
| GATCTGCACTTCTTCCCTTG+AGG | - | chr7_2:25041860-25041879 | Msa1054050:intron | 50.0% | |
| TGCACTAGGTCCAAGCTAAC+TGG | + | chr7_2:25041905-25041924 | None:intergenic | 50.0% | |
| CTGCGAGATGTTGCAGAGAA+AGG | - | chr7_2:25042642-25042661 | Msa1054050:intron | 50.0% | |
| GCAGAGAAAGGAATGGTTGG+AGG | - | chr7_2:25042654-25042673 | Msa1054050:intron | 50.0% | |
| GTTGGAAGCCAATGCTGTTG+TGG | - | chr7_2:25042938-25042957 | Msa1054050:intron | 50.0% | |
| ! | GGTTTGGTTCAAGGAGGGTT+TGG | - | chr7_2:25043359-25043378 | Msa1054050:CDS | 50.0% |
| TGACAAGAATCTCCGTGACG+AGG | - | chr7_2:25043601-25043620 | Msa1054050:intron | 50.0% | |
| TATCGAGTCGAGTCGAGCTC+AGG | + | chr7_2:25039557-25039576 | None:intergenic | 55.0% | |
| TTCGGTTCATTGCCAGCCCT+AGG | - | chr7_2:25040544-25040563 | Msa1054050:intron | 55.0% | |
| GGCATGTCTCACAGAGCTCT+AGG | - | chr7_2:25042675-25042694 | Msa1054050:intron | 55.0% | |
| ! | GGTTCAAGGAGGGTTTGGTC+TGG | - | chr7_2:25043364-25043383 | Msa1054050:CDS | 55.0% |
| ! | CAGGCAGGTTCGACTCGACT+CGG | + | chr7_2:25039538-25039557 | None:intergenic | 60.0% |
| GAGTCGAGTCGAGCTCAGGC+AGG | + | chr7_2:25039553-25039572 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 25039033 | 25043628 | 25039033 | ID=Msa1054050;Name=Msa1054050 |
| chr7_2 | mRNA | 25039033 | 25043628 | 25039033 | ID=Msa1054050-mRNA-1;Parent=Msa1054050;Name=Msa1054050-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|0.83|0.6|0.5|6|0|523 |
| chr7_2 | exon | 25043607 | 25043628 | 25043607 | ID=Msa1054050-mRNA-1:exon:5419;Parent=Msa1054050-mRNA-1 |
| chr7_2 | exon | 25043284 | 25043436 | 25043284 | ID=Msa1054050-mRNA-1:exon:5418;Parent=Msa1054050-mRNA-1 |
| chr7_2 | exon | 25041264 | 25041413 | 25041264 | ID=Msa1054050-mRNA-1:exon:5417;Parent=Msa1054050-mRNA-1 |
| chr7_2 | exon | 25041075 | 25041242 | 25041075 | ID=Msa1054050-mRNA-1:exon:5416;Parent=Msa1054050-mRNA-1 |
| chr7_2 | exon | 25040205 | 25040281 | 25040205 | ID=Msa1054050-mRNA-1:exon:5415;Parent=Msa1054050-mRNA-1 |
| chr7_2 | exon | 25039033 | 25040034 | 25039033 | ID=Msa1054050-mRNA-1:exon:5414;Parent=Msa1054050-mRNA-1 |
| chr7_2 | CDS | 25043607 | 25043628 | 25043607 | ID=Msa1054050-mRNA-1:cds;Parent=Msa1054050-mRNA-1 |
| chr7_2 | CDS | 25043284 | 25043436 | 25043284 | ID=Msa1054050-mRNA-1:cds;Parent=Msa1054050-mRNA-1 |
| chr7_2 | CDS | 25041264 | 25041413 | 25041264 | ID=Msa1054050-mRNA-1:cds;Parent=Msa1054050-mRNA-1 |
| chr7_2 | CDS | 25041075 | 25041242 | 25041075 | ID=Msa1054050-mRNA-1:cds;Parent=Msa1054050-mRNA-1 |
| chr7_2 | CDS | 25040205 | 25040281 | 25040205 | ID=Msa1054050-mRNA-1:cds;Parent=Msa1054050-mRNA-1 |
| chr7_2 | CDS | 25039033 | 25040034 | 25039033 | ID=Msa1054050-mRNA-1:cds;Parent=Msa1054050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
