Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054080 | AES78253.1 | 83.879 | 428 | 53 | 3 | 3 | 415 | 15 | 441 | 0.0 | 684 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054080 | sp|Q9ZWJ9|ARR2_ARATH | 34.914 | 232 | 116 | 5 | 4 | 206 | 53 | 278 | 3.66e-37 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054080 | G7L033 | 83.879 | 428 | 53 | 3 | 3 | 415 | 15 | 441 | 0.0 | 684 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1054080 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054080 | MtrunA17_Chr7g0223971 | 77.396 | 407 | 43 | 4 | 57 | 415 | 1 | 406 | 0.0 | 567 |
| Msa1054080 | MtrunA17_Chr7g0223991 | 69.302 | 215 | 37 | 5 | 205 | 409 | 24 | 219 | 3.99e-88 | 267 |
| Msa1054080 | MtrunA17_Chr6g0473731 | 45.109 | 368 | 149 | 10 | 55 | 406 | 10 | 340 | 3.38e-77 | 246 |
| Msa1054080 | MtrunA17_Chr4g0067981 | 36.715 | 207 | 106 | 3 | 11 | 194 | 67 | 271 | 3.00e-37 | 144 |
| Msa1054080 | MtrunA17_Chr1g0161431 | 32.389 | 247 | 135 | 6 | 2 | 217 | 38 | 283 | 2.69e-36 | 140 |
| Msa1054080 | MtrunA17_Chr2g0294911 | 35.047 | 214 | 118 | 3 | 4 | 197 | 58 | 270 | 4.07e-35 | 137 |
| Msa1054080 | MtrunA17_Chr1g0149841 | 34.259 | 216 | 119 | 2 | 5 | 197 | 35 | 250 | 2.55e-34 | 133 |
| Msa1054080 | MtrunA17_Chr6g0471041 | 35.749 | 207 | 108 | 3 | 4 | 200 | 43 | 234 | 3.84e-34 | 132 |
| Msa1054080 | MtrunA17_Chr8g0376881 | 32.645 | 242 | 138 | 4 | 2 | 218 | 52 | 293 | 5.49e-34 | 133 |
| Msa1054080 | MtrunA17_Chr4g0009981 | 29.927 | 274 | 157 | 8 | 20 | 278 | 2 | 255 | 1.50e-33 | 126 |
| Msa1054080 | MtrunA17_Chr4g0009851 | 31.724 | 290 | 161 | 10 | 3 | 278 | 42 | 308 | 1.81e-33 | 127 |
| Msa1054080 | MtrunA17_Chr3g0137101 | 33.636 | 220 | 119 | 3 | 5 | 197 | 38 | 257 | 2.52e-33 | 132 |
| Msa1054080 | MtrunA17_Chr3g0123131 | 32.083 | 240 | 130 | 3 | 4 | 213 | 42 | 278 | 3.80e-33 | 131 |
| Msa1054080 | MtrunA17_Chr4g0009901 | 35.323 | 201 | 122 | 2 | 3 | 203 | 41 | 233 | 6.72e-33 | 125 |
| Msa1054080 | MtrunA17_Chr7g0275891 | 32.000 | 250 | 127 | 6 | 5 | 216 | 35 | 279 | 2.44e-30 | 120 |
| Msa1054080 | MtrunA17_Chr7g0275401 | 35.514 | 214 | 114 | 3 | 5 | 194 | 35 | 248 | 4.07e-29 | 115 |
| Msa1054080 | MtrunA17_Chr2g0304841 | 31.780 | 236 | 125 | 4 | 5 | 205 | 48 | 282 | 2.42e-28 | 117 |
| Msa1054080 | MtrunA17_Chr4g0074411 | 32.110 | 218 | 128 | 3 | 5 | 202 | 48 | 265 | 7.38e-28 | 116 |
| Msa1054080 | MtrunA17_Chr3g0134481 | 31.892 | 185 | 87 | 2 | 5 | 189 | 38 | 183 | 1.33e-27 | 108 |
| Msa1054080 | MtrunA17_Chr1g0149851 | 31.933 | 238 | 124 | 3 | 5 | 204 | 35 | 272 | 1.52e-27 | 114 |
| Msa1054080 | MtrunA17_Chr3g0134461 | 34.783 | 184 | 90 | 3 | 5 | 187 | 38 | 192 | 1.88e-27 | 108 |
| Msa1054080 | MtrunA17_Chr4g0074401 | 30.942 | 223 | 131 | 2 | 5 | 204 | 47 | 269 | 3.68e-26 | 110 |
| Msa1054080 | MtrunA17_Chr4g0074421 | 33.155 | 187 | 107 | 3 | 24 | 192 | 1 | 187 | 2.95e-22 | 94.0 |
| Msa1054080 | MtrunA17_Chr1g0149831 | 32.065 | 184 | 99 | 3 | 37 | 197 | 4 | 184 | 3.78e-22 | 94.4 |
| Msa1054080 | MtrunA17_Chr4g0031961 | 43.678 | 87 | 42 | 2 | 115 | 194 | 101 | 187 | 2.21e-17 | 82.4 |
| Msa1054080 | MtrunA17_Chr4g0009991 | 35.833 | 120 | 72 | 2 | 68 | 187 | 2 | 116 | 2.43e-17 | 77.8 |
| Msa1054080 | MtrunA17_Chr7g0255711 | 50.000 | 66 | 33 | 0 | 129 | 194 | 82 | 147 | 4.41e-17 | 81.6 |
| Msa1054080 | MtrunA17_Chr4g0011071 | 29.252 | 147 | 92 | 3 | 22 | 164 | 36 | 174 | 1.05e-15 | 75.1 |
| Msa1054080 | MtrunA17_Chr8g0391911 | 27.273 | 209 | 112 | 6 | 25 | 202 | 58 | 257 | 1.08e-14 | 73.9 |
| Msa1054080 | MtrunA17_Chr4g0040481 | 57.407 | 54 | 23 | 0 | 137 | 190 | 157 | 210 | 3.25e-14 | 73.9 |
| Msa1054080 | MtrunA17_Chr2g0324891 | 35.821 | 134 | 73 | 4 | 137 | 269 | 160 | 281 | 8.28e-14 | 72.8 |
| Msa1054080 | MtrunA17_Chr4g0054981 | 47.619 | 63 | 33 | 0 | 137 | 199 | 309 | 371 | 1.85e-13 | 72.4 |
| Msa1054080 | MtrunA17_Chr5g0400241 | 50.000 | 60 | 30 | 0 | 137 | 196 | 310 | 369 | 2.85e-13 | 71.6 |
| Msa1054080 | MtrunA17_Chr8g0383961 | 27.835 | 194 | 104 | 6 | 4 | 194 | 43 | 203 | 1.72e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054080 | AT3G16857.3 | 34.188 | 234 | 107 | 3 | 14 | 206 | 2 | 229 | 8.17e-38 | 145 |
| Msa1054080 | AT3G16857.1 | 34.177 | 237 | 109 | 3 | 11 | 206 | 69 | 299 | 9.53e-38 | 145 |
| Msa1054080 | AT3G16857.2 | 34.177 | 237 | 109 | 3 | 11 | 206 | 69 | 299 | 1.53e-37 | 145 |
| Msa1054080 | AT5G07210.2 | 34.615 | 260 | 119 | 7 | 4 | 214 | 41 | 298 | 1.60e-36 | 141 |
| Msa1054080 | AT5G07210.1 | 34.601 | 263 | 121 | 7 | 1 | 214 | 46 | 306 | 2.43e-36 | 141 |
| Msa1054080 | AT4G31920.1 | 37.198 | 207 | 117 | 3 | 5 | 201 | 43 | 246 | 5.35e-33 | 131 |
| Msa1054080 | AT2G01760.1 | 32.609 | 230 | 118 | 5 | 1 | 197 | 34 | 259 | 7.13e-33 | 128 |
| Msa1054080 | AT2G25180.1 | 35.849 | 212 | 117 | 3 | 5 | 197 | 43 | 254 | 1.25e-32 | 130 |
| Msa1054080 | AT2G01760.2 | 31.858 | 226 | 118 | 4 | 5 | 197 | 65 | 287 | 7.26e-32 | 125 |
| Msa1054080 | AT2G27070.1 | 32.819 | 259 | 123 | 7 | 5 | 214 | 45 | 301 | 2.34e-30 | 123 |
| Msa1054080 | AT5G58080.1 | 30.449 | 312 | 170 | 10 | 5 | 274 | 44 | 350 | 4.95e-28 | 117 |
| Msa1054080 | AT1G67710.1 | 33.484 | 221 | 122 | 4 | 4 | 200 | 36 | 255 | 1.58e-27 | 115 |
| Msa1054080 | AT2G01760.3 | 31.282 | 195 | 98 | 4 | 36 | 197 | 3 | 194 | 2.32e-26 | 108 |
| Msa1054080 | AT5G49240.1 | 30.583 | 206 | 121 | 3 | 4 | 187 | 67 | 272 | 1.83e-25 | 105 |
| Msa1054080 | AT3G62670.1 | 30.244 | 205 | 125 | 5 | 4 | 190 | 64 | 268 | 4.13e-23 | 101 |
| Msa1054080 | AT1G67710.2 | 33.511 | 188 | 100 | 4 | 37 | 200 | 4 | 190 | 6.74e-22 | 97.8 |
| Msa1054080 | AT1G67710.3 | 32.597 | 181 | 97 | 4 | 44 | 200 | 2 | 181 | 1.39e-17 | 85.1 |
| Msa1054080 | AT3G10760.1 | 46.479 | 71 | 38 | 0 | 124 | 194 | 91 | 161 | 2.84e-17 | 82.8 |
| Msa1054080 | AT5G05090.1 | 46.377 | 69 | 37 | 0 | 126 | 194 | 69 | 137 | 4.06e-17 | 81.3 |
| Msa1054080 | AT2G40970.1 | 50.000 | 66 | 33 | 0 | 129 | 194 | 96 | 161 | 7.14e-17 | 80.5 |
| Msa1054080 | AT3G46640.2 | 48.529 | 68 | 33 | 1 | 129 | 194 | 133 | 200 | 1.04e-16 | 81.3 |
| Msa1054080 | AT3G46640.1 | 48.529 | 68 | 33 | 1 | 129 | 194 | 133 | 200 | 1.04e-16 | 81.3 |
| Msa1054080 | AT5G59570.2 | 37.500 | 104 | 54 | 2 | 104 | 196 | 96 | 199 | 1.08e-16 | 80.9 |
| Msa1054080 | AT5G59570.1 | 37.500 | 104 | 54 | 2 | 104 | 196 | 96 | 199 | 1.08e-16 | 80.9 |
| Msa1054080 | AT3G46640.3 | 48.529 | 68 | 33 | 1 | 129 | 194 | 133 | 200 | 1.43e-16 | 80.9 |
| Msa1054080 | AT5G44190.1 | 59.016 | 61 | 23 | 1 | 130 | 190 | 141 | 199 | 1.01e-15 | 79.0 |
| Msa1054080 | AT5G44190.2 | 59.016 | 61 | 23 | 1 | 130 | 190 | 141 | 199 | 1.06e-15 | 78.6 |
| Msa1054080 | AT4G18020.8 | 34.109 | 129 | 73 | 4 | 85 | 213 | 252 | 368 | 9.84e-14 | 73.2 |
| Msa1054080 | AT4G18020.11 | 34.109 | 129 | 73 | 4 | 85 | 213 | 252 | 368 | 9.84e-14 | 73.2 |
| Msa1054080 | AT4G18020.4 | 34.109 | 129 | 73 | 4 | 85 | 213 | 252 | 368 | 9.84e-14 | 73.2 |
| Msa1054080 | AT4G18020.5 | 34.109 | 129 | 73 | 4 | 85 | 213 | 252 | 368 | 9.84e-14 | 73.2 |
| Msa1054080 | AT4G18020.10 | 34.109 | 129 | 73 | 4 | 85 | 213 | 252 | 368 | 9.84e-14 | 73.2 |
| Msa1054080 | AT4G18020.7 | 34.109 | 129 | 73 | 4 | 85 | 213 | 252 | 368 | 9.84e-14 | 73.2 |
| Msa1054080 | AT4G18020.3 | 34.109 | 129 | 73 | 4 | 85 | 213 | 252 | 368 | 1.11e-13 | 73.2 |
| Msa1054080 | AT4G18020.2 | 34.109 | 129 | 73 | 4 | 85 | 213 | 252 | 368 | 1.11e-13 | 73.2 |
| Msa1054080 | AT4G18020.1 | 34.109 | 129 | 73 | 4 | 85 | 213 | 252 | 368 | 1.11e-13 | 73.2 |
| Msa1054080 | AT4G18020.6 | 34.109 | 129 | 73 | 4 | 85 | 213 | 252 | 368 | 1.11e-13 | 73.2 |
| Msa1054080 | AT4G18020.9 | 34.109 | 129 | 73 | 4 | 85 | 213 | 252 | 368 | 1.11e-13 | 73.2 |
| Msa1054080 | AT2G20570.1 | 55.556 | 54 | 24 | 0 | 137 | 190 | 152 | 205 | 1.91e-13 | 72.0 |
| Msa1054080 | AT2G20570.2 | 56.863 | 51 | 22 | 0 | 140 | 190 | 171 | 221 | 8.22e-13 | 70.5 |
Find 67 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGAAGACTTCAAAGATAT+TGG | 0.226006 | 7_2:-25161187 | Msa1054080:CDS |
| CAATTTCCTTATATACAAAA+AGG | 0.233477 | 7_2:-25159771 | Msa1054080:CDS |
| GAACTATGAACAATGGATTA+AGG | 0.243060 | 7_2:-25159374 | Msa1054080:CDS |
| GTTGATCTTTAACATGCTTT+TGG | 0.248731 | 7_2:+25161643 | None:intergenic |
| AAATGTAGCAAGTCACTTAC+AGG | 0.277878 | 7_2:-25160200 | Msa1054080:intron |
| CAACATGATGTGTTGGAAAT+TGG | 0.289454 | 7_2:+25159796 | None:intergenic |
| TATGCCAGTGTTTGTAAATA+TGG | 0.290072 | 7_2:+25159858 | None:intergenic |
| CTGCTTGCTATTGACCAAAT+TGG | 0.292299 | 7_2:-25160962 | Msa1054080:CDS |
| TTTGGAATTCAGCTGAATAA+TGG | 0.295030 | 7_2:-25159417 | Msa1054080:CDS |
| GTAAGAAATAACAATCCTTT+TGG | 0.299725 | 7_2:-25159435 | Msa1054080:CDS |
| ACTTACTTTCCAATCCAATT+TGG | 0.301438 | 7_2:+25160948 | None:intergenic |
| TTAAGAAACAAAAGCTTGTT+TGG | 0.309580 | 7_2:-25161009 | Msa1054080:CDS |
| GATATTAGAAACCAAAATTA+TGG | 0.315005 | 7_2:-25159501 | Msa1054080:CDS |
| AGGGCTGGCTCTTCAAGATT+TGG | 0.319081 | 7_2:-25159751 | Msa1054080:CDS |
| ACTTACTTATTATAGGTATC+TGG | 0.323118 | 7_2:+25161619 | None:intergenic |
| TTGAAGTCTTCAGCACAAAA+AGG | 0.324880 | 7_2:+25161196 | None:intergenic |
| ATCTCGAAGACACTAGAAAA+TGG | 0.329147 | 7_2:-25161241 | Msa1054080:CDS |
| TTCAAGATTTGGAACAAGTT+AGG | 0.330501 | 7_2:-25159740 | Msa1054080:CDS |
| GAGTGACACTTACTTATTAT+AGG | 0.338576 | 7_2:+25161612 | None:intergenic |
| GGCTGTGCCAAAGAAAATTC+TGG | 0.364480 | 7_2:-25160254 | Msa1054080:CDS |
| AACTATGAACAATGGATTAA+GGG | 0.373260 | 7_2:-25159373 | Msa1054080:CDS |
| CTGAAGACTTCAAAGATATT+GGG | 0.389220 | 7_2:-25161186 | Msa1054080:CDS |
| CAAAGCATGACGAGCATCTC+TGG | 0.407288 | 7_2:+25161746 | None:intergenic |
| AGCTATGATCAAAACAGGTT+TGG | 0.409010 | 7_2:-25159672 | Msa1054080:CDS |
| ATTGTAGAATTTCACATAGT+AGG | 0.410495 | 7_2:-25161684 | Msa1054080:CDS |
| GGAGCAGGAATGGTTGGAAT+TGG | 0.414917 | 7_2:-25159396 | Msa1054080:CDS |
| AGTGCAAATAACAATGAAAC+GGG | 0.416165 | 7_2:-25159345 | Msa1054080:CDS |
| TAGAGCTGAACAAGGATTGA+TGG | 0.418771 | 7_2:-25159571 | Msa1054080:CDS |
| TTTCACATAGTAGGAATGAA+TGG | 0.421323 | 7_2:-25161675 | Msa1054080:CDS |
| CTGCGAGATGTTGCAGAGAA+AGG | 0.423104 | 7_2:-25159999 | Msa1054080:CDS |
| GTGTTGGAAATTGGTTGAAA+TGG | 0.423793 | 7_2:+25159805 | None:intergenic |
| AGATATTGGGAAATATGTTA+TGG | 0.426061 | 7_2:-25161173 | Msa1054080:CDS |
| ATAACAGCTATGATCAAAAC+AGG | 0.431496 | 7_2:-25159677 | Msa1054080:CDS |
| TGCTATTGACCAAATTGGAT+TGG | 0.439605 | 7_2:-25160957 | Msa1054080:CDS |
| ATCACTCTTCGAGAAAATGA+AGG | 0.451581 | 7_2:-25161723 | Msa1054080:CDS |
| CAGTTATGTCTGAAGACAAT+AGG | 0.455126 | 7_2:-25161273 | Msa1054080:CDS |
| ACATCAGAAGTAAATTTATG+AGG | 0.469959 | 7_2:+25159456 | None:intergenic |
| CTTCTTCAAGTTTCTTAACA+AGG | 0.470322 | 7_2:-25159539 | Msa1054080:CDS |
| TAGTGCAAATAACAATGAAA+CGG | 0.476245 | 7_2:-25159346 | Msa1054080:CDS |
| GATTTGGAACAAGTTAGGCT+TGG | 0.484973 | 7_2:-25159735 | Msa1054080:CDS |
| AGTGTCTTCGAGATTAAACT+TGG | 0.495636 | 7_2:+25161250 | None:intergenic |
| CTTGAATATCTCTCTCTCCT+TGG | 0.495918 | 7_2:+25161035 | None:intergenic |
| GTTGCAGAGAAAGGAATGGT+TGG | 0.508048 | 7_2:-25159990 | Msa1054080:CDS |
| TAGGCTTGGAAAATCAAAGT+TGG | 0.508790 | 7_2:-25159721 | Msa1054080:CDS |
| CTCACAGAGCTCTAAGATCA+AGG | 0.512314 | 7_2:-25159959 | Msa1054080:CDS |
| ACAATGAAACGGGGAGGGAG+TGG | 0.514140 | 7_2:-25159335 | Msa1054080:CDS |
| ACTTCCATATTTACAAACAC+TGG | 0.526073 | 7_2:-25159862 | Msa1054080:CDS |
| AATAATGGAGCAGGAATGGT+TGG | 0.529804 | 7_2:-25159402 | Msa1054080:CDS |
| TTCTTCAAGTTTCTTAACAA+GGG | 0.536372 | 7_2:-25159538 | Msa1054080:CDS |
| GCTGAATAATGGAGCAGGAA+TGG | 0.538668 | 7_2:-25159406 | Msa1054080:CDS |
| ATTCAGCTGAATAATGGAGC+AGG | 0.542016 | 7_2:-25159411 | Msa1054080:CDS |
| TTATTCAGCTGAATTCCAAA+AGG | 0.546390 | 7_2:+25159420 | None:intergenic |
| AGTGGAAGAGAGTTTCTAGC+AGG | 0.567708 | 7_2:-25159317 | Msa1054080:CDS |
| AATTGGTCAACATGATGTGT+TGG | 0.569003 | 7_2:+25159789 | None:intergenic |
| GCAGAGAAAGGAATGGTTGG+AGG | 0.578705 | 7_2:-25159987 | Msa1054080:CDS |
| GGAATTGGAACTATGAACAA+TGG | 0.591999 | 7_2:-25159381 | Msa1054080:CDS |
| TCTATATGATGAAGAGCTAG+TGG | 0.595020 | 7_2:+25159590 | None:intergenic |
| GTTATTCTCTGCAACAACAT+CGG | 0.600928 | 7_2:+25159695 | None:intergenic |
| AGAAAGAGTAAAGAATGCCA+AGG | 0.604346 | 7_2:-25161052 | Msa1054080:CDS |
| ATTTCTCTTATCATAGACAT+CGG | 0.611317 | 7_2:+25159921 | None:intergenic |
| GTTTGTAAATATGGAAGTGT+TGG | 0.612895 | 7_2:+25159867 | None:intergenic |
| ACACTGGCATATCAATCAAG+AGG | 0.661627 | 7_2:-25159846 | Msa1054080:CDS |
| TCATCATATAGAGCTGAACA+AGG | 0.674377 | 7_2:-25159579 | Msa1054080:CDS |
| CAAATAACAATGAAACGGGG+AGG | 0.675066 | 7_2:-25159341 | Msa1054080:CDS |
| AAATAACAATGAAACGGGGA+GGG | 0.679481 | 7_2:-25159340 | Msa1054080:CDS |
| AGATGTTGCAGAGAAAGGAA+TGG | 0.689031 | 7_2:-25159994 | Msa1054080:CDS |
| GTGCAAATAACAATGAAACG+GGG | 0.779545 | 7_2:-25159344 | Msa1054080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATGAATTCTTTTAAAAA+TGG | - | chr7_2:25160506-25160525 | Msa1054080:intron | 10.0% |
| !!! | ATCTTTTAAAAATATTTGAA+AGG | - | chr7_2:25160900-25160919 | Msa1054080:intron | 10.0% |
| !! | AATATTAAAATTTGGATAAT+AGG | + | chr7_2:25161437-25161456 | None:intergenic | 10.0% |
| !! | TGTGTATTAATATTAAAATT+TGG | + | chr7_2:25161445-25161464 | None:intergenic | 10.0% |
| !! | ATGATGATATTATAATATTA+TGG | + | chr7_2:25161679-25161698 | None:intergenic | 10.0% |
| !!! | GTTTAATAAATTTCTTTTAC+AGG | + | chr7_2:25159327-25159346 | None:intergenic | 15.0% |
| !!! | ATTTATTAAACAGAAGTATT+AGG | - | chr7_2:25159336-25159355 | Msa1054080:CDS | 15.0% |
| !!! | TTTATTAAACAGAAGTATTA+GGG | - | chr7_2:25159337-25159356 | Msa1054080:CDS | 15.0% |
| !!! | ATTTTACAGTGATATTATAA+TGG | - | chr7_2:25161124-25161143 | Msa1054080:intron | 15.0% |
| !! | TGTTATTAGTATATTTACTT+AGG | + | chr7_2:25161265-25161284 | None:intergenic | 15.0% |
| !! | AACAATTTAGTAATTTACAT+AGG | - | chr7_2:25161281-25161300 | Msa1054080:intron | 15.0% |
| !! | AATTTCCTTATATACAAAAA+GGG | - | chr7_2:25162054-25162073 | Msa1054080:intron | 15.0% |
| !! | TGTTTATACTATAGTATTTG+TGG | + | chr7_2:25159500-25159519 | None:intergenic | 20.0% |
| !! | AATTAAAGCAAGAAATTTGT+GGG | + | chr7_2:25159639-25159658 | None:intergenic | 20.0% |
| !! | AAATTAAAGCAAGAAATTTG+TGG | + | chr7_2:25159640-25159659 | None:intergenic | 20.0% |
| !! | AGAGAAGTAAAAAACTAAAA+TGG | + | chr7_2:25159754-25159773 | None:intergenic | 20.0% |
| !! | ACATGCAAAAATATATTTCA+TGG | - | chr7_2:25160007-25160026 | Msa1054080:CDS | 20.0% |
| !!! | ATTTTTTTCTTTGCATGTAT+AGG | - | chr7_2:25160258-25160277 | Msa1054080:CDS | 20.0% |
| !!! | TTTTTTTCTTTGCATGTATA+GGG | - | chr7_2:25160259-25160278 | Msa1054080:intron | 20.0% |
| !! | GATTACTTGTTTAAAGATTT+AGG | - | chr7_2:25160323-25160342 | Msa1054080:intron | 20.0% |
| !! | ACTGAATTTCTTAAGTAAAT+GGG | + | chr7_2:25160392-25160411 | None:intergenic | 20.0% |
| !! | AACTGAATTTCTTAAGTAAA+TGG | + | chr7_2:25160393-25160412 | None:intergenic | 20.0% |
| !!! | GTTTTTTCATGAAAATCATT+AGG | + | chr7_2:25160430-25160449 | None:intergenic | 20.0% |
| !! | ATATCACTGTAAAATAATAG+CGG | + | chr7_2:25161119-25161138 | None:intergenic | 20.0% |
| !!! | CTTTTTGTATATAAGGAAAT+TGG | + | chr7_2:25162055-25162074 | None:intergenic | 20.0% |
| !! | CAATTTCCTTATATACAAAA+AGG | - | chr7_2:25162053-25162072 | Msa1054080:intron | 20.0% |
| !!! | TTAACAAGGGATTTTAAATT+TGG | - | chr7_2:25162299-25162318 | Msa1054080:intron | 20.0% |
| !! | GATATTAGAAACCAAAATTA+TGG | - | chr7_2:25162323-25162342 | Msa1054080:intron | 20.0% |
| ! | CAATTCAAAATAACTTGACA+AGG | - | chr7_2:25159365-25159384 | Msa1054080:CDS | 25.0% |
| ! | GAAATATAACTCCAATAGTA+AGG | - | chr7_2:25159390-25159409 | Msa1054080:CDS | 25.0% |
| !!! | ATTCAAGTTTTCCTATTAAG+CGG | + | chr7_2:25159435-25159454 | None:intergenic | 25.0% |
| !! | GATAGTTTAGAACAAATCAT+AGG | + | chr7_2:25159710-25159729 | None:intergenic | 25.0% |
| !! | AATGTATTCAAAGAGAGTAT+AGG | + | chr7_2:25159938-25159957 | None:intergenic | 25.0% |
| ! | AAAGATTAAAACAAGGCATA+AGG | + | chr7_2:25159979-25159998 | None:intergenic | 25.0% |
| ! | ACGAGAAAAAGATTAAAACA+AGG | + | chr7_2:25159986-25160005 | None:intergenic | 25.0% |
| ! | TGCAAAAATATATTTCATGG+TGG | - | chr7_2:25160010-25160029 | Msa1054080:CDS | 25.0% |
| ! | ATTGTAGAATTTCACATAGT+AGG | - | chr7_2:25160140-25160159 | Msa1054080:intron | 25.0% |
| ! | ACTTACTTATTATAGGTATC+TGG | + | chr7_2:25160208-25160227 | None:intergenic | 25.0% |
| ! | ATGCAAAGAAAAAAATTGCA+AGG | + | chr7_2:25160254-25160273 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTTGCATGTATAG+GGG | - | chr7_2:25160260-25160279 | Msa1054080:intron | 25.0% |
| ! | GATAAACAAGTATTCAAAAC+TGG | + | chr7_2:25160290-25160309 | None:intergenic | 25.0% |
| ! | ATTTAGGTACCTAAATTGAT+AGG | - | chr7_2:25160339-25160358 | Msa1054080:intron | 25.0% |
| ! | AAAAAACTACACCGTTAATT+CGG | - | chr7_2:25160443-25160462 | Msa1054080:intron | 25.0% |
| ! | AGATATTGGGAAATATGTTA+TGG | - | chr7_2:25160651-25160670 | Msa1054080:intron | 25.0% |
| !! | TTAAGAAACAAAAGCTTGTT+TGG | - | chr7_2:25160815-25160834 | Msa1054080:intron | 25.0% |
| !! | AGAAACATTTTGTGAAGATA+AGG | + | chr7_2:25160844-25160863 | None:intergenic | 25.0% |
| ! | ATTTGACAACCATATCATAT+GGG | - | chr7_2:25161149-25161168 | Msa1054080:CDS | 25.0% |
| ! | AGTTAAAATCCCATATGATA+TGG | + | chr7_2:25161161-25161180 | None:intergenic | 25.0% |
| !!! | GATAATAGGTAGTTTGTTTT+TGG | + | chr7_2:25161423-25161442 | None:intergenic | 25.0% |
| !! | TTATCTTTTCCCTAATTTAG+AGG | - | chr7_2:25161549-25161568 | Msa1054080:intron | 25.0% |
| ! | ATTTCTCTTATCATAGACAT+CGG | + | chr7_2:25161906-25161925 | None:intergenic | 25.0% |
| !! | TTCTTCAAGTTTCTTAACAA+GGG | - | chr7_2:25162286-25162305 | Msa1054080:intron | 25.0% |
| !! | TGCTTTTAACACCATAATTT+TGG | + | chr7_2:25162337-25162356 | None:intergenic | 25.0% |
| ! | ACATCAGAAGTAAATTTATG+AGG | + | chr7_2:25162371-25162390 | None:intergenic | 25.0% |
| !! | GTAAGAAATAACAATCCTTT+TGG | - | chr7_2:25162389-25162408 | Msa1054080:intron | 25.0% |
| !!! | AACTATGAACAATGGATTAA+GGG | - | chr7_2:25162451-25162470 | Msa1054080:intron | 25.0% |
| ! | TAGTGCAAATAACAATGAAA+CGG | - | chr7_2:25162478-25162497 | Msa1054080:intron | 25.0% |
| TGAACTCTACTAATTTCCAA+TGG | + | chr7_2:25159462-25159481 | None:intergenic | 30.0% | |
| ATAGACAAAGAGTTTATGCA+TGG | - | chr7_2:25159524-25159543 | Msa1054080:CDS | 30.0% | |
| TAGACAAAGAGTTTATGCAT+GGG | - | chr7_2:25159525-25159544 | Msa1054080:CDS | 30.0% | |
| ! | ATACTTTTGTCTCACAATCA+AGG | - | chr7_2:25159851-25159870 | Msa1054080:CDS | 30.0% |
| TTTCACATAGTAGGAATGAA+TGG | - | chr7_2:25160149-25160168 | Msa1054080:intron | 30.0% | |
| ! | GTTGATCTTTAACATGCTTT+TGG | + | chr7_2:25160184-25160203 | None:intergenic | 30.0% |
| GAGTGACACTTACTTATTAT+AGG | + | chr7_2:25160215-25160234 | None:intergenic | 30.0% | |
| TTTAGTGCACCTATCAATTT+AGG | + | chr7_2:25160351-25160370 | None:intergenic | 30.0% | |
| CTGAAGACTTCAAAGATATT+GGG | - | chr7_2:25160638-25160657 | Msa1054080:intron | 30.0% | |
| ACTTACTTTCCAATCCAATT+TGG | + | chr7_2:25160879-25160898 | None:intergenic | 30.0% | |
| TACTTCTTCCAACCATTAAT+TGG | - | chr7_2:25160969-25160988 | Msa1054080:CDS | 30.0% | |
| AAAATGGCTCAACCAATTAA+TGG | + | chr7_2:25160984-25161003 | None:intergenic | 30.0% | |
| TTTCATTGTTGGATTGATAG+TGG | + | chr7_2:25161049-25161068 | None:intergenic | 30.0% | |
| CCTCAAGTATATTTCATTGT+TGG | + | chr7_2:25161060-25161079 | None:intergenic | 30.0% | |
| CCAACAATGAAATATACTTG+AGG | - | chr7_2:25161057-25161076 | Msa1054080:CDS | 30.0% | |
| CATTTGACAACCATATCATA+TGG | - | chr7_2:25161148-25161167 | Msa1054080:CDS | 30.0% | |
| ! | GTTTAACTTTGTAACCTCAA+GGG | + | chr7_2:25161188-25161207 | None:intergenic | 30.0% |
| ! | AGTTTAACTTTGTAACCTCA+AGG | + | chr7_2:25161189-25161208 | None:intergenic | 30.0% |
| ACACCACTATCATTGTTTAT+AGG | - | chr7_2:25161239-25161258 | Msa1054080:CDS | 30.0% | |
| ! | TACCCCTAAAATTAAGTTGT+TGG | - | chr7_2:25161481-25161500 | Msa1054080:intron | 30.0% |
| ! | AGCCAACAACTTAATTTTAG+GGG | + | chr7_2:25161486-25161505 | None:intergenic | 30.0% |
| ! | GAGCCAACAACTTAATTTTA+GGG | + | chr7_2:25161487-25161506 | None:intergenic | 30.0% |
| ! | AGAGCCAACAACTTAATTTT+AGG | + | chr7_2:25161488-25161507 | None:intergenic | 30.0% |
| ! | ATGATCTCCAGAATTTTCTT+TGG | + | chr7_2:25161580-25161599 | None:intergenic | 30.0% |
| ! | GTTTGTAAATATGGAAGTGT+TGG | + | chr7_2:25161960-25161979 | None:intergenic | 30.0% |
| ACTTCCATATTTACAAACAC+TGG | - | chr7_2:25161962-25161981 | Msa1054080:intron | 30.0% | |
| TATGCCAGTGTTTGTAAATA+TGG | + | chr7_2:25161969-25161988 | None:intergenic | 30.0% | |
| ! | TTCAAGATTTGGAACAAGTT+AGG | - | chr7_2:25162084-25162103 | Msa1054080:intron | 30.0% |
| ATAACAGCTATGATCAAAAC+AGG | - | chr7_2:25162147-25162166 | Msa1054080:intron | 30.0% | |
| ! | TTTTCGCTTGAAAAATTGGA+AGG | + | chr7_2:25162193-25162212 | None:intergenic | 30.0% |
| ! | GAGTTTTTCGCTTGAAAAAT+TGG | + | chr7_2:25162197-25162216 | None:intergenic | 30.0% |
| ! | CTTCTTCAAGTTTCTTAACA+AGG | - | chr7_2:25162285-25162304 | Msa1054080:intron | 30.0% |
| TTATTCAGCTGAATTCCAAA+AGG | + | chr7_2:25162407-25162426 | None:intergenic | 30.0% | |
| ! | TTTGGAATTCAGCTGAATAA+TGG | - | chr7_2:25162407-25162426 | Msa1054080:intron | 30.0% |
| !! | GAACTATGAACAATGGATTA+AGG | - | chr7_2:25162450-25162469 | Msa1054080:intron | 30.0% |
| AGTGCAAATAACAATGAAAC+GGG | - | chr7_2:25162479-25162498 | Msa1054080:intron | 30.0% | |
| GTTGTTCAACACCTTACTAT+TGG | + | chr7_2:25159404-25159423 | None:intergenic | 35.0% | |
| ! | AAGTTTTCCTATTAAGCGGT+GGG | + | chr7_2:25159431-25159450 | None:intergenic | 35.0% |
| GAAAACTTGAATCCTTCCAT+TGG | - | chr7_2:25159443-25159462 | Msa1054080:CDS | 35.0% | |
| CTCTACTAATTTCCAATGGA+AGG | + | chr7_2:25159458-25159477 | None:intergenic | 35.0% | |
| TATTGCGTCAAATGTTACTG+AGG | - | chr7_2:25159594-25159613 | Msa1054080:CDS | 35.0% | |
| ATTGCGTCAAATGTTACTGA+GGG | - | chr7_2:25159595-25159614 | Msa1054080:CDS | 35.0% | |
| AAAGCAAGAAATTTGTGGGA+AGG | + | chr7_2:25159635-25159654 | None:intergenic | 35.0% | |
| CAAATCATAGGCTATAGCAA+AGG | + | chr7_2:25159698-25159717 | None:intergenic | 35.0% | |
| TGCATGTCTAGTATAAAGAG+TGG | + | chr7_2:25159887-25159906 | None:intergenic | 35.0% | |
| ATCACTCTTCGAGAAAATGA+AGG | - | chr7_2:25160101-25160120 | Msa1054080:intron | 35.0% | |
| CCAGATAAACTCCGAATTAA+CGG | + | chr7_2:25160457-25160476 | None:intergenic | 35.0% | |
| CAGTTATGTCTGAAGACAAT+AGG | - | chr7_2:25160551-25160570 | Msa1054080:intron | 35.0% | |
| AGTGTCTTCGAGATTAAACT+TGG | + | chr7_2:25160577-25160596 | None:intergenic | 35.0% | |
| ATCTCGAAGACACTAGAAAA+TGG | - | chr7_2:25160583-25160602 | Msa1054080:intron | 35.0% | |
| TTGAAGTCTTCAGCACAAAA+AGG | + | chr7_2:25160631-25160650 | None:intergenic | 35.0% | |
| GCTGAAGACTTCAAAGATAT+TGG | - | chr7_2:25160637-25160656 | Msa1054080:intron | 35.0% | |
| ! | CAATGCTTCTTTTCGTTCTT+AGG | + | chr7_2:25160748-25160767 | None:intergenic | 35.0% |
| AGAAAGAGTAAAGAATGCCA+AGG | - | chr7_2:25160772-25160791 | Msa1054080:intron | 35.0% | |
| TGCTATTGACCAAATTGGAT+TGG | - | chr7_2:25160867-25160886 | Msa1054080:intron | 35.0% | |
| CAGACAATACCTCAGAAAAA+TGG | + | chr7_2:25161000-25161019 | None:intergenic | 35.0% | |
| TTAAACTCTTACCACTAAGC+TGG | - | chr7_2:25161202-25161221 | Msa1054080:CDS | 35.0% | |
| AGGCCTATAAACAATGATAG+TGG | + | chr7_2:25161245-25161264 | None:intergenic | 35.0% | |
| ! | ACATTTTCTCTGTTCACGTT+AGG | + | chr7_2:25161610-25161629 | None:intergenic | 35.0% |
| AAATGTAGCAAGTCACTTAC+AGG | - | chr7_2:25161624-25161643 | Msa1054080:intron | 35.0% | |
| GTGTTGGAAATTGGTTGAAA+TGG | + | chr7_2:25162022-25162041 | None:intergenic | 35.0% | |
| CAACATGATGTGTTGGAAAT+TGG | + | chr7_2:25162031-25162050 | None:intergenic | 35.0% | |
| AATTGGTCAACATGATGTGT+TGG | + | chr7_2:25162038-25162057 | None:intergenic | 35.0% | |
| TCCTTATATACAAAAAGGGC+TGG | - | chr7_2:25162058-25162077 | Msa1054080:intron | 35.0% | |
| TAGGCTTGGAAAATCAAAGT+TGG | - | chr7_2:25162103-25162122 | Msa1054080:intron | 35.0% | |
| GTTATTCTCTGCAACAACAT+CGG | + | chr7_2:25162132-25162151 | None:intergenic | 35.0% | |
| AGCTATGATCAAAACAGGTT+TGG | - | chr7_2:25162152-25162171 | Msa1054080:intron | 35.0% | |
| GCGAAAAACTCATTCAATGA+TGG | - | chr7_2:25162206-25162225 | Msa1054080:intron | 35.0% | |
| TCTATATGATGAAGAGCTAG+TGG | + | chr7_2:25162237-25162256 | None:intergenic | 35.0% | |
| TCATCATATAGAGCTGAACA+AGG | - | chr7_2:25162245-25162264 | Msa1054080:intron | 35.0% | |
| GGAATTGGAACTATGAACAA+TGG | - | chr7_2:25162443-25162462 | Msa1054080:intron | 35.0% | |
| GTGCAAATAACAATGAAACG+GGG | - | chr7_2:25162480-25162499 | Msa1054080:intron | 35.0% | |
| AAATAACAATGAAACGGGGA+GGG | - | chr7_2:25162484-25162503 | Msa1054080:intron | 35.0% | |
| AACATTACCCACCGCTTAAT+AGG | - | chr7_2:25159421-25159440 | Msa1054080:CDS | 40.0% | |
| ! | CAAGTTTTCCTATTAAGCGG+TGG | + | chr7_2:25159432-25159451 | None:intergenic | 40.0% |
| CCGTTAATTCGGAGTTTATC+TGG | - | chr7_2:25160454-25160473 | Msa1054080:intron | 40.0% | |
| CTTGAATATCTCTCTCTCCT+TGG | + | chr7_2:25160792-25160811 | None:intergenic | 40.0% | |
| !! | CTGCTTGCTATTGACCAAAT+TGG | - | chr7_2:25160862-25160881 | Msa1054080:intron | 40.0% |
| TGGCTCAACCAATTAATGGT+TGG | + | chr7_2:25160980-25160999 | None:intergenic | 40.0% | |
| !!! | TTGGTTGAGCCATTTTTCTG+AGG | - | chr7_2:25160988-25161007 | Msa1054080:CDS | 40.0% |
| !! | TTCTGAGGTATTGTCTGCTT+TGG | - | chr7_2:25161003-25161022 | Msa1054080:CDS | 40.0% |
| !!! | GATTTTAACTTCCTCCCTTG+AGG | - | chr7_2:25161171-25161190 | Msa1054080:CDS | 40.0% |
| TAACTTTGTAACCTCAAGGG+AGG | + | chr7_2:25161185-25161204 | None:intergenic | 40.0% | |
| TTGGCACAGCCTCTAAATTA+GGG | + | chr7_2:25161561-25161580 | None:intergenic | 40.0% | |
| TTTGGCACAGCCTCTAAATT+AGG | + | chr7_2:25161562-25161581 | None:intergenic | 40.0% | |
| AGATGTTGCAGAGAAAGGAA+TGG | - | chr7_2:25161830-25161849 | Msa1054080:intron | 40.0% | |
| ACACTGGCATATCAATCAAG+AGG | - | chr7_2:25161978-25161997 | Msa1054080:intron | 40.0% | |
| ! | GCCAGCCCTTTTTGTATATA+AGG | + | chr7_2:25162062-25162081 | None:intergenic | 40.0% |
| ! | GATTTGGAACAAGTTAGGCT+TGG | - | chr7_2:25162089-25162108 | Msa1054080:intron | 40.0% |
| TAGAGCTGAACAAGGATTGA+TGG | - | chr7_2:25162253-25162272 | Msa1054080:intron | 40.0% | |
| ! | ATTCAGCTGAATAATGGAGC+AGG | - | chr7_2:25162413-25162432 | Msa1054080:intron | 40.0% |
| ! | AATAATGGAGCAGGAATGGT+TGG | - | chr7_2:25162422-25162441 | Msa1054080:intron | 40.0% |
| CAAATAACAATGAAACGGGG+AGG | - | chr7_2:25162483-25162502 | Msa1054080:intron | 40.0% | |
| GGCTGTGCCAAAGAAAATTC+TGG | - | chr7_2:25161570-25161589 | Msa1054080:intron | 45.0% | |
| GTTGCAGAGAAAGGAATGGT+TGG | - | chr7_2:25161834-25161853 | Msa1054080:intron | 45.0% | |
| !! | CTCACAGAGCTCTAAGATCA+AGG | - | chr7_2:25161865-25161884 | Msa1054080:intron | 45.0% |
| ! | GCTGAATAATGGAGCAGGAA+TGG | - | chr7_2:25162418-25162437 | Msa1054080:intron | 45.0% |
| !! | AGTGGAAGAGAGTTTCTAGC+AGG | - | chr7_2:25162507-25162526 | Msa1054080:intron | 45.0% |
| !!! | TATCATTTTATATTTAAAAA+AGG | + | chr7_2:25159576-25159595 | None:intergenic | 5.0% |
| CAAAGCATGACGAGCATCTC+TGG | + | chr7_2:25160081-25160100 | None:intergenic | 50.0% | |
| CTGCGAGATGTTGCAGAGAA+AGG | - | chr7_2:25161825-25161844 | Msa1054080:intron | 50.0% | |
| GCAGAGAAAGGAATGGTTGG+AGG | - | chr7_2:25161837-25161856 | Msa1054080:intron | 50.0% | |
| !! | AGGGCTGGCTCTTCAAGATT+TGG | - | chr7_2:25162073-25162092 | Msa1054080:intron | 50.0% |
| GGAGCAGGAATGGTTGGAAT+TGG | - | chr7_2:25162428-25162447 | Msa1054080:intron | 50.0% | |
| TGCACTAGCTGCCAGCTTAG+TGG | + | chr7_2:25161216-25161235 | None:intergenic | 55.0% | |
| ACAATGAAACGGGGAGGGAG+TGG | - | chr7_2:25162489-25162508 | Msa1054080:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 25159308 | 25162538 | 25159308 | ID=Msa1054080;Name=Msa1054080 |
| chr7_2 | mRNA | 25159308 | 25162538 | 25159308 | ID=Msa1054080-mRNA-1;Parent=Msa1054080;Name=Msa1054080-mRNA-1;_AED=0.08;_eAED=0.12;_QI=0|0|0|0.71|0.5|0.42|7|0|429 |
| chr7_2 | exon | 25162533 | 25162538 | 25162533 | ID=Msa1054080-mRNA-1:exon:5451;Parent=Msa1054080-mRNA-1 |
| chr7_2 | exon | 25162312 | 25162318 | 25162312 | ID=Msa1054080-mRNA-1:exon:5450;Parent=Msa1054080-mRNA-1 |
| chr7_2 | exon | 25161625 | 25161777 | 25161625 | ID=Msa1054080-mRNA-1:exon:5449;Parent=Msa1054080-mRNA-1 |
| chr7_2 | exon | 25161143 | 25161292 | 25161143 | ID=Msa1054080-mRNA-1:exon:5448;Parent=Msa1054080-mRNA-1 |
| chr7_2 | exon | 25160954 | 25161121 | 25160954 | ID=Msa1054080-mRNA-1:exon:5447;Parent=Msa1054080-mRNA-1 |
| chr7_2 | exon | 25160201 | 25160277 | 25160201 | ID=Msa1054080-mRNA-1:exon:5446;Parent=Msa1054080-mRNA-1 |
| chr7_2 | exon | 25159308 | 25160036 | 25159308 | ID=Msa1054080-mRNA-1:exon:5445;Parent=Msa1054080-mRNA-1 |
| chr7_2 | CDS | 25162533 | 25162538 | 25162533 | ID=Msa1054080-mRNA-1:cds;Parent=Msa1054080-mRNA-1 |
| chr7_2 | CDS | 25162312 | 25162318 | 25162312 | ID=Msa1054080-mRNA-1:cds;Parent=Msa1054080-mRNA-1 |
| chr7_2 | CDS | 25161625 | 25161777 | 25161625 | ID=Msa1054080-mRNA-1:cds;Parent=Msa1054080-mRNA-1 |
| chr7_2 | CDS | 25161143 | 25161292 | 25161143 | ID=Msa1054080-mRNA-1:cds;Parent=Msa1054080-mRNA-1 |
| chr7_2 | CDS | 25160954 | 25161121 | 25160954 | ID=Msa1054080-mRNA-1:cds;Parent=Msa1054080-mRNA-1 |
| chr7_2 | CDS | 25160201 | 25160277 | 25160201 | ID=Msa1054080-mRNA-1:cds;Parent=Msa1054080-mRNA-1 |
| chr7_2 | CDS | 25159308 | 25160036 | 25159308 | ID=Msa1054080-mRNA-1:cds;Parent=Msa1054080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
