Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054300 | KEH21945.1 | 88.971 | 136 | 15 | 0 | 1 | 136 | 1 | 136 | 3.77e-85 | 255 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054300 | sp|Q69T58|ROC8_ORYSJ | 67.769 | 121 | 38 | 1 | 17 | 137 | 15 | 134 | 3.63e-49 | 170 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054300 | A0A072U7Y3 | 88.971 | 136 | 15 | 0 | 1 | 136 | 1 | 136 | 1.80e-85 | 255 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1054300 | TF | HB-other |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054300 | MtrunA17_Chr6g0481041 | 63.087 | 149 | 43 | 1 | 1 | 137 | 1 | 149 | 4.16e-56 | 186 |
| Msa1054300 | MtrunA17_Chr7g0224481 | 62.774 | 137 | 39 | 2 | 1 | 137 | 1 | 125 | 3.19e-50 | 163 |
| Msa1054300 | MtrunA17_Chr7g0224451 | 62.774 | 137 | 39 | 2 | 1 | 137 | 1 | 125 | 3.25e-49 | 163 |
| Msa1054300 | MtrunA17_Chr5g0419821 | 58.197 | 122 | 50 | 1 | 17 | 137 | 33 | 154 | 6.86e-43 | 139 |
| Msa1054300 | MtrunA17_Chr7g0246631 | 53.719 | 121 | 56 | 0 | 17 | 137 | 91 | 211 | 1.51e-40 | 143 |
| Msa1054300 | MtrunA17_Chr8g0350321 | 52.893 | 121 | 57 | 0 | 17 | 137 | 115 | 235 | 6.76e-40 | 141 |
| Msa1054300 | MtrunA17_Chr5g0410711 | 50.413 | 121 | 59 | 1 | 19 | 138 | 91 | 211 | 3.52e-38 | 136 |
| Msa1054300 | MtrunA17_Chr1g0203671 | 52.066 | 121 | 58 | 0 | 17 | 137 | 95 | 215 | 9.51e-38 | 135 |
| Msa1054300 | MtrunA17_Chr2g0322731 | 51.261 | 119 | 58 | 0 | 19 | 137 | 102 | 220 | 3.36e-37 | 134 |
| Msa1054300 | MtrunA17_Chr4g0024351 | 47.101 | 138 | 71 | 1 | 2 | 137 | 43 | 180 | 3.72e-37 | 134 |
| Msa1054300 | MtrunA17_Chr6g0472471 | 47.009 | 117 | 62 | 0 | 21 | 137 | 73 | 189 | 5.78e-35 | 127 |
| Msa1054300 | MtrunA17_Chr2g0331581 | 45.833 | 120 | 63 | 1 | 21 | 138 | 143 | 262 | 5.55e-29 | 110 |
| Msa1054300 | MtrunA17_Chr5g0394111 | 33.913 | 115 | 75 | 1 | 24 | 138 | 40 | 153 | 8.29e-17 | 75.9 |
| Msa1054300 | MtrunA17_Chr4g0028991 | 32.174 | 115 | 68 | 3 | 3 | 107 | 9 | 123 | 1.42e-13 | 66.6 |
| Msa1054300 | MtrunA17_Chr3g0140351 | 32.283 | 127 | 64 | 3 | 5 | 109 | 5 | 131 | 5.24e-13 | 65.1 |
| Msa1054300 | MtrunA17_Chr8g0340411 | 38.710 | 93 | 49 | 2 | 11 | 95 | 6 | 98 | 5.94e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054300 | AT1G73360.1 | 63.333 | 120 | 44 | 0 | 19 | 138 | 34 | 153 | 1.92e-47 | 162 |
| Msa1054300 | AT1G17920.2 | 61.345 | 119 | 46 | 0 | 20 | 138 | 24 | 142 | 6.89e-45 | 155 |
| Msa1054300 | AT1G17920.1 | 61.345 | 119 | 46 | 0 | 20 | 138 | 24 | 142 | 6.89e-45 | 155 |
| Msa1054300 | AT4G00730.2 | 52.893 | 121 | 57 | 0 | 17 | 137 | 134 | 254 | 9.99e-41 | 143 |
| Msa1054300 | AT3G61150.1 | 52.941 | 119 | 56 | 0 | 19 | 137 | 112 | 230 | 1.73e-40 | 143 |
| Msa1054300 | AT4G00730.1 | 52.893 | 121 | 57 | 0 | 17 | 137 | 134 | 254 | 2.69e-40 | 143 |
| Msa1054300 | AT4G21750.2 | 52.941 | 119 | 56 | 0 | 19 | 137 | 64 | 182 | 3.57e-37 | 134 |
| Msa1054300 | AT4G21750.1 | 52.941 | 119 | 56 | 0 | 19 | 137 | 64 | 182 | 3.57e-37 | 134 |
| Msa1054300 | AT4G21750.3 | 52.941 | 119 | 56 | 0 | 19 | 137 | 64 | 182 | 3.57e-37 | 134 |
| Msa1054300 | AT4G21750.4 | 52.941 | 119 | 56 | 0 | 19 | 137 | 64 | 182 | 3.57e-37 | 134 |
| Msa1054300 | AT1G05230.12 | 48.148 | 135 | 67 | 1 | 6 | 137 | 50 | 184 | 1.10e-36 | 132 |
| Msa1054300 | AT4G04890.2 | 52.101 | 119 | 57 | 0 | 19 | 137 | 64 | 182 | 1.71e-36 | 132 |
| Msa1054300 | AT4G04890.1 | 52.101 | 119 | 57 | 0 | 19 | 137 | 64 | 182 | 1.71e-36 | 132 |
| Msa1054300 | AT1G05230.3 | 48.148 | 135 | 67 | 1 | 6 | 137 | 50 | 184 | 2.81e-36 | 131 |
| Msa1054300 | AT1G05230.8 | 48.148 | 135 | 67 | 1 | 6 | 137 | 50 | 184 | 3.11e-36 | 131 |
| Msa1054300 | AT1G05230.4 | 48.148 | 135 | 67 | 1 | 6 | 137 | 50 | 184 | 3.11e-36 | 131 |
| Msa1054300 | AT1G05230.9 | 48.148 | 135 | 67 | 1 | 6 | 137 | 50 | 184 | 3.11e-36 | 131 |
| Msa1054300 | AT1G05230.10 | 48.148 | 135 | 67 | 1 | 6 | 137 | 50 | 184 | 3.11e-36 | 131 |
| Msa1054300 | AT1G05230.7 | 48.148 | 135 | 67 | 1 | 6 | 137 | 50 | 184 | 3.11e-36 | 131 |
| Msa1054300 | AT1G05230.11 | 48.148 | 135 | 67 | 1 | 6 | 137 | 50 | 184 | 3.11e-36 | 131 |
| Msa1054300 | AT1G05230.2 | 48.148 | 135 | 67 | 1 | 6 | 137 | 50 | 184 | 3.11e-36 | 131 |
| Msa1054300 | AT1G05230.6 | 48.148 | 135 | 67 | 1 | 6 | 137 | 50 | 184 | 3.11e-36 | 131 |
| Msa1054300 | AT1G05230.5 | 48.148 | 135 | 67 | 1 | 6 | 137 | 50 | 184 | 3.11e-36 | 131 |
| Msa1054300 | AT1G05230.1 | 48.148 | 135 | 67 | 1 | 6 | 137 | 50 | 184 | 3.11e-36 | 131 |
| Msa1054300 | AT3G03260.2 | 54.783 | 115 | 51 | 1 | 22 | 135 | 28 | 142 | 9.25e-34 | 123 |
| Msa1054300 | AT3G03260.1 | 54.783 | 115 | 51 | 1 | 22 | 135 | 28 | 142 | 1.76e-33 | 123 |
| Msa1054300 | AT5G52170.3 | 46.154 | 117 | 63 | 0 | 21 | 137 | 61 | 177 | 4.86e-32 | 119 |
| Msa1054300 | AT5G52170.1 | 46.154 | 117 | 63 | 0 | 21 | 137 | 61 | 177 | 4.86e-32 | 119 |
| Msa1054300 | AT5G52170.2 | 46.154 | 117 | 63 | 0 | 21 | 137 | 61 | 177 | 5.39e-32 | 119 |
| Msa1054300 | AT2G32370.1 | 42.647 | 136 | 78 | 0 | 3 | 138 | 54 | 189 | 1.77e-30 | 115 |
| Msa1054300 | AT5G46880.3 | 46.218 | 119 | 62 | 1 | 19 | 137 | 113 | 229 | 4.20e-30 | 114 |
| Msa1054300 | AT5G46880.1 | 46.218 | 119 | 62 | 1 | 19 | 137 | 113 | 229 | 4.20e-30 | 114 |
| Msa1054300 | AT5G46880.2 | 46.218 | 119 | 62 | 1 | 19 | 137 | 113 | 229 | 4.20e-30 | 114 |
| Msa1054300 | AT5G17320.1 | 48.148 | 135 | 68 | 2 | 6 | 138 | 14 | 148 | 8.93e-29 | 110 |
| Msa1054300 | AT4G17710.1 | 42.857 | 119 | 56 | 1 | 19 | 137 | 90 | 196 | 2.66e-27 | 106 |
| Msa1054300 | AT1G79840.5 | 42.188 | 128 | 63 | 2 | 12 | 137 | 96 | 214 | 2.83e-26 | 102 |
| Msa1054300 | AT1G79840.1 | 42.188 | 128 | 63 | 2 | 12 | 137 | 96 | 214 | 2.94e-26 | 103 |
| Msa1054300 | AT1G79840.4 | 42.188 | 128 | 63 | 2 | 12 | 137 | 96 | 214 | 3.00e-26 | 103 |
| Msa1054300 | AT1G79840.3 | 42.188 | 128 | 63 | 2 | 12 | 137 | 38 | 156 | 3.62e-26 | 102 |
| Msa1054300 | AT1G79840.6 | 42.188 | 128 | 63 | 2 | 12 | 137 | 38 | 156 | 3.62e-26 | 102 |
| Msa1054300 | AT1G79840.2 | 42.188 | 128 | 63 | 2 | 12 | 137 | 125 | 243 | 4.62e-26 | 102 |
| Msa1054300 | AT1G34650.1 | 46.087 | 115 | 62 | 0 | 24 | 138 | 23 | 137 | 5.80e-24 | 96.7 |
| Msa1054300 | AT4G25530.1 | 36.220 | 127 | 80 | 1 | 14 | 139 | 37 | 163 | 8.29e-18 | 79.0 |
| Msa1054300 | AT4G32880.1 | 39.175 | 97 | 51 | 2 | 7 | 95 | 2 | 98 | 3.81e-12 | 62.8 |
| Msa1054300 | AT1G30490.1 | 34.211 | 114 | 67 | 2 | 1 | 106 | 2 | 115 | 2.32e-11 | 60.5 |
Find 22 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTTTGGTTTCAGAATAAA+AGG | 0.228121 | 7_2:-25765849 | Msa1054300:CDS |
| CTCCTAGACAGATCGATGTT+TGG | 0.403168 | 7_2:-25765864 | Msa1054300:CDS |
| AACATAGGTTGCAGTTAAGC+AGG | 0.427466 | 7_2:-25765900 | Msa1054300:CDS |
| AAATCACAATCAACATTGAT+TGG | 0.437113 | 7_2:+25764612 | None:intergenic |
| CTTCTAATACAGATTATATG+AGG | 0.451700 | 7_2:-25766086 | Msa1054300:CDS |
| GAATAAAAGGGCTCAGATGA+AGG | 0.502319 | 7_2:-25765836 | Msa1054300:intron |
| ATCTGAGAATATAGCTATGA+GGG | 0.523034 | 7_2:-25764676 | Msa1054300:CDS |
| GATCTGAGAATATAGCTATG+AGG | 0.531988 | 7_2:-25764677 | Msa1054300:CDS |
| CACATCCTTGTGAACAACAT+AGG | 0.537997 | 7_2:-25765915 | Msa1054300:CDS |
| ACACTCCTCGTCAGACTCAA+AGG | 0.564267 | 7_2:-25766044 | Msa1054300:CDS |
| TGTTTGGTTTCAGAATAAAA+GGG | 0.584709 | 7_2:-25765848 | Msa1054300:CDS |
| TCACAATCAACATTGATTGG+TGG | 0.587384 | 7_2:+25764615 | None:intergenic |
| AAATGCTCAACTCAAAGAAG+AGG | 0.587977 | 7_2:-25764565 | Msa1054300:CDS |
| AACCAAACATCGATCTGTCT+AGG | 0.593076 | 7_2:+25765862 | None:intergenic |
| CTTATGGAGCATCACAGTGA+AGG | 0.613585 | 7_2:-25766117 | Msa1054300:CDS |
| TGCAACCTATGTTGTTCACA+AGG | 0.621373 | 7_2:+25765910 | None:intergenic |
| ACATAGGTTGCAGTTAAGCA+GGG | 0.638853 | 7_2:-25765899 | Msa1054300:CDS |
| ATCGATCTGTCTAGGAGACA+AGG | 0.639267 | 7_2:+25765870 | None:intergenic |
| TCAAGCCTTTGAGTCTGACG+AGG | 0.641279 | 7_2:+25766039 | None:intergenic |
| GAGTCTGACGAGGAGTGTGA+CGG | 0.645624 | 7_2:+25766049 | None:intergenic |
| AATGTTATCTGCAGCACTTG+TGG | 0.647495 | 7_2:-25764642 | Msa1054300:CDS |
| GTTATCTGCAGCACTTGTGG+TGG | 0.684640 | 7_2:-25764639 | Msa1054300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATATTAAAACAATAAG+TGG | + | chr7_2:25765107-25765126 | None:intergenic | 10.0% |
| !! | TTTAATATTAAAACAATAAG+TGG | + | chr7_2:25765107-25765126 | None:intergenic | 10.0% |
| !!! | GTCTTTTTATTTTATTTTTC+AGG | - | chr7_2:25764639-25764658 | Msa1054300:CDS | 15.0% |
| !!! | GTTATAAATTTTAGTTGATT+TGG | - | chr7_2:25764789-25764808 | Msa1054300:intron | 15.0% |
| !! | CATGTTCAATTATTAAAAAT+GGG | - | chr7_2:25764941-25764960 | Msa1054300:intron | 15.0% |
| !!! | AAAATCTTGTTTTTTCATAA+TGG | + | chr7_2:25764967-25764986 | None:intergenic | 15.0% |
| !! | AAATGCTTATTAAATTGTAA+TGG | - | chr7_2:25765434-25765453 | Msa1054300:intron | 15.0% |
| !! | AAACAAAAGAAAAATATTTG+AGG | - | chr7_2:25765637-25765656 | Msa1054300:intron | 15.0% |
| !!! | GTCTTTTTATTTTATTTTTC+AGG | - | chr7_2:25764639-25764658 | Msa1054300:CDS | 15.0% |
| !!! | GTTATAAATTTTAGTTGATT+TGG | - | chr7_2:25764789-25764808 | Msa1054300:intron | 15.0% |
| !! | CATGTTCAATTATTAAAAAT+GGG | - | chr7_2:25764941-25764960 | Msa1054300:intron | 15.0% |
| !!! | AAAATCTTGTTTTTTCATAA+TGG | + | chr7_2:25764967-25764986 | None:intergenic | 15.0% |
| !! | AAATGCTTATTAAATTGTAA+TGG | - | chr7_2:25765434-25765453 | Msa1054300:intron | 15.0% |
| !! | AAACAAAAGAAAAATATTTG+AGG | - | chr7_2:25765637-25765656 | Msa1054300:intron | 15.0% |
| !! | AAACAAAAAATAATAAAGGG+TGG | + | chr7_2:25764613-25764632 | None:intergenic | 20.0% |
| !!! | CCATTTTTAATAATTGAACA+TGG | + | chr7_2:25764943-25764962 | None:intergenic | 20.0% |
| !! | CCATGTTCAATTATTAAAAA+TGG | - | chr7_2:25764940-25764959 | Msa1054300:intron | 20.0% |
| !! | TAAGTAAAAGTAAGTTTGTA+TGG | - | chr7_2:25765047-25765066 | Msa1054300:intron | 20.0% |
| !! | AAGTAAAAGTAAGTTTGTAT+GGG | - | chr7_2:25765048-25765067 | Msa1054300:intron | 20.0% |
| !! | AAATGGATCTTTAAGTATAT+AGG | - | chr7_2:25765189-25765208 | Msa1054300:intron | 20.0% |
| !!! | GATTTAATTTGTGTTGTTAA+TGG | - | chr7_2:25765352-25765371 | Msa1054300:intron | 20.0% |
| !!! | ATAGTAGTTTTCTACATTTA+TGG | - | chr7_2:25765402-25765421 | Msa1054300:intron | 20.0% |
| !! | AAACAAAAAATAATAAAGGG+TGG | + | chr7_2:25764613-25764632 | None:intergenic | 20.0% |
| !!! | CCATTTTTAATAATTGAACA+TGG | + | chr7_2:25764943-25764962 | None:intergenic | 20.0% |
| !! | CCATGTTCAATTATTAAAAA+TGG | - | chr7_2:25764940-25764959 | Msa1054300:intron | 20.0% |
| !! | TAAGTAAAAGTAAGTTTGTA+TGG | - | chr7_2:25765047-25765066 | Msa1054300:intron | 20.0% |
| !! | AAGTAAAAGTAAGTTTGTAT+GGG | - | chr7_2:25765048-25765067 | Msa1054300:intron | 20.0% |
| !! | AAATGGATCTTTAAGTATAT+AGG | - | chr7_2:25765189-25765208 | Msa1054300:intron | 20.0% |
| !!! | GATTTAATTTGTGTTGTTAA+TGG | - | chr7_2:25765352-25765371 | Msa1054300:intron | 20.0% |
| !!! | ATAGTAGTTTTCTACATTTA+TGG | - | chr7_2:25765402-25765421 | Msa1054300:intron | 20.0% |
| ! | CTTCTAATACAGATTATATG+AGG | - | chr7_2:25764507-25764526 | Msa1054300:intron | 25.0% |
| !! | ATGTTTGGTTTCAGAATAAA+AGG | - | chr7_2:25764744-25764763 | Msa1054300:intron | 25.0% |
| !! | TGTTTGGTTTCAGAATAAAA+GGG | - | chr7_2:25764745-25764764 | Msa1054300:intron | 25.0% |
| ! | AATAGTCTAATCATATGTGT+CGG | + | chr7_2:25764897-25764916 | None:intergenic | 25.0% |
| !! | TAGTTTGTCACTATTTAGAT+AGG | + | chr7_2:25765242-25765261 | None:intergenic | 25.0% |
| ! | TGACAAACTAGTACTAATAT+CGG | - | chr7_2:25765252-25765271 | Msa1054300:intron | 25.0% |
| ! | CAATTACATACACAACTATT+AGG | + | chr7_2:25765460-25765479 | None:intergenic | 25.0% |
| ! | TGGTAAAATGAAATGCATTT+GGG | + | chr7_2:25765544-25765563 | None:intergenic | 25.0% |
| ! | TTGGTAAAATGAAATGCATT+TGG | + | chr7_2:25765545-25765564 | None:intergenic | 25.0% |
| ! | GACATCTTGTAATAGTTTAT+TGG | + | chr7_2:25765564-25765583 | None:intergenic | 25.0% |
| ! | ATATAGCATCTAAATGTGTT+AGG | + | chr7_2:25765616-25765635 | None:intergenic | 25.0% |
| !! | TGGTTTTCTTAAATTATTCG+CGG | - | chr7_2:25765741-25765760 | Msa1054300:intron | 25.0% |
| ! | AAATCACAATCAACATTGAT+TGG | + | chr7_2:25765984-25766003 | None:intergenic | 25.0% |
| !! | CACAAATATTTTGCATAAGT+GGG | + | chr7_2:25766076-25766095 | None:intergenic | 25.0% |
| !! | ACACAAATATTTTGCATAAG+TGG | + | chr7_2:25766077-25766096 | None:intergenic | 25.0% |
| ! | CTTCTAATACAGATTATATG+AGG | - | chr7_2:25764507-25764526 | Msa1054300:intron | 25.0% |
| !! | ATGTTTGGTTTCAGAATAAA+AGG | - | chr7_2:25764744-25764763 | Msa1054300:intron | 25.0% |
| !! | TGTTTGGTTTCAGAATAAAA+GGG | - | chr7_2:25764745-25764764 | Msa1054300:intron | 25.0% |
| ! | AATAGTCTAATCATATGTGT+CGG | + | chr7_2:25764897-25764916 | None:intergenic | 25.0% |
| !! | TAGTTTGTCACTATTTAGAT+AGG | + | chr7_2:25765242-25765261 | None:intergenic | 25.0% |
| ! | TGACAAACTAGTACTAATAT+CGG | - | chr7_2:25765252-25765271 | Msa1054300:intron | 25.0% |
| ! | CAATTACATACACAACTATT+AGG | + | chr7_2:25765460-25765479 | None:intergenic | 25.0% |
| ! | TGGTAAAATGAAATGCATTT+GGG | + | chr7_2:25765544-25765563 | None:intergenic | 25.0% |
| ! | TTGGTAAAATGAAATGCATT+TGG | + | chr7_2:25765545-25765564 | None:intergenic | 25.0% |
| ! | GACATCTTGTAATAGTTTAT+TGG | + | chr7_2:25765564-25765583 | None:intergenic | 25.0% |
| ! | ATATAGCATCTAAATGTGTT+AGG | + | chr7_2:25765616-25765635 | None:intergenic | 25.0% |
| !! | TGGTTTTCTTAAATTATTCG+CGG | - | chr7_2:25765741-25765760 | Msa1054300:intron | 25.0% |
| ! | AAATCACAATCAACATTGAT+TGG | + | chr7_2:25765984-25766003 | None:intergenic | 25.0% |
| !! | CACAAATATTTTGCATAAGT+GGG | + | chr7_2:25766076-25766095 | None:intergenic | 25.0% |
| !! | ACACAAATATTTTGCATAAG+TGG | + | chr7_2:25766077-25766096 | None:intergenic | 25.0% |
| TATGTAACAAGGTTATTCCT+CGG | - | chr7_2:25764854-25764873 | Msa1054300:intron | 30.0% | |
| TAAAAGTAAGTTTGTATGGG+AGG | - | chr7_2:25765051-25765070 | Msa1054300:intron | 30.0% | |
| ! | TCACTTTGTTTAGTGCAAAA+TGG | - | chr7_2:25765172-25765191 | Msa1054300:intron | 30.0% |
| ATAATTCAGTATAGTAGTCC+AGG | + | chr7_2:25765720-25765739 | None:intergenic | 30.0% | |
| GACTACTATACTGAATTATG+TGG | - | chr7_2:25765721-25765740 | Msa1054300:intron | 30.0% | |
| TAAAACACATCTATGAAGCA+CGG | + | chr7_2:25765777-25765796 | None:intergenic | 30.0% | |
| ! | TATTTTACAACGATTCCTTG+TGG | - | chr7_2:25765818-25765837 | Msa1054300:intron | 30.0% |
| ATCTGAGAATATAGCTATGA+GGG | - | chr7_2:25765917-25765936 | Msa1054300:CDS | 30.0% | |
| ! | GCTGCAGATAACATTTTTAA+GGG | + | chr7_2:25765946-25765965 | None:intergenic | 30.0% |
| ! | TGCTGCAGATAACATTTTTA+AGG | + | chr7_2:25765947-25765966 | None:intergenic | 30.0% |
| ! | ATTTTGCATAAGTGGGTATT+TGG | + | chr7_2:25766069-25766088 | None:intergenic | 30.0% |
| TATGTAACAAGGTTATTCCT+CGG | - | chr7_2:25764854-25764873 | Msa1054300:intron | 30.0% | |
| TAAAAGTAAGTTTGTATGGG+AGG | - | chr7_2:25765051-25765070 | Msa1054300:intron | 30.0% | |
| ! | TCACTTTGTTTAGTGCAAAA+TGG | - | chr7_2:25765172-25765191 | Msa1054300:intron | 30.0% |
| ATAATTCAGTATAGTAGTCC+AGG | + | chr7_2:25765720-25765739 | None:intergenic | 30.0% | |
| GACTACTATACTGAATTATG+TGG | - | chr7_2:25765721-25765740 | Msa1054300:intron | 30.0% | |
| TAAAACACATCTATGAAGCA+CGG | + | chr7_2:25765777-25765796 | None:intergenic | 30.0% | |
| ! | TATTTTACAACGATTCCTTG+TGG | - | chr7_2:25765818-25765837 | Msa1054300:intron | 30.0% |
| ATCTGAGAATATAGCTATGA+GGG | - | chr7_2:25765917-25765936 | Msa1054300:CDS | 30.0% | |
| ! | GCTGCAGATAACATTTTTAA+GGG | + | chr7_2:25765946-25765965 | None:intergenic | 30.0% |
| ! | TGCTGCAGATAACATTTTTA+AGG | + | chr7_2:25765947-25765966 | None:intergenic | 30.0% |
| ! | ATTTTGCATAAGTGGGTATT+TGG | + | chr7_2:25766069-25766088 | None:intergenic | 30.0% |
| TGGATCTTATATAACTCACG+TGG | - | chr7_2:25764809-25764828 | Msa1054300:intron | 35.0% | |
| GGATCTTATATAACTCACGT+GGG | - | chr7_2:25764810-25764829 | Msa1054300:intron | 35.0% | |
| ! | GTGTGTGTTTCTATGTAACA+AGG | - | chr7_2:25764843-25764862 | Msa1054300:intron | 35.0% |
| ! | AACATGGCCTCTGATTTTAT+CGG | + | chr7_2:25764927-25764946 | None:intergenic | 35.0% |
| GATATTGAACCTCAATACCA+AGG | - | chr7_2:25765517-25765536 | Msa1054300:intron | 35.0% | |
| TTGTTCAAACCAAAACCACA+AGG | + | chr7_2:25765836-25765855 | None:intergenic | 35.0% | |
| GATCTGAGAATATAGCTATG+AGG | - | chr7_2:25765916-25765935 | Msa1054300:CDS | 35.0% | |
| ! | TCACAATCAACATTGATTGG+TGG | + | chr7_2:25765981-25766000 | None:intergenic | 35.0% |
| AAATGCTCAACTCAAAGAAG+AGG | - | chr7_2:25766028-25766047 | Msa1054300:intron | 35.0% | |
| TGGATCTTATATAACTCACG+TGG | - | chr7_2:25764809-25764828 | Msa1054300:intron | 35.0% | |
| GGATCTTATATAACTCACGT+GGG | - | chr7_2:25764810-25764829 | Msa1054300:intron | 35.0% | |
| ! | GTGTGTGTTTCTATGTAACA+AGG | - | chr7_2:25764843-25764862 | Msa1054300:intron | 35.0% |
| ! | AACATGGCCTCTGATTTTAT+CGG | + | chr7_2:25764927-25764946 | None:intergenic | 35.0% |
| GATATTGAACCTCAATACCA+AGG | - | chr7_2:25765517-25765536 | Msa1054300:intron | 35.0% | |
| TTGTTCAAACCAAAACCACA+AGG | + | chr7_2:25765836-25765855 | None:intergenic | 35.0% | |
| GATCTGAGAATATAGCTATG+AGG | - | chr7_2:25765916-25765935 | Msa1054300:CDS | 35.0% | |
| ! | TCACAATCAACATTGATTGG+TGG | + | chr7_2:25765981-25766000 | None:intergenic | 35.0% |
| AAATGCTCAACTCAAAGAAG+AGG | - | chr7_2:25766028-25766047 | Msa1054300:intron | 35.0% | |
| CACATCCTTGTGAACAACAT+AGG | - | chr7_2:25764678-25764697 | Msa1054300:CDS | 40.0% | |
| TGCAACCTATGTTGTTCACA+AGG | + | chr7_2:25764686-25764705 | None:intergenic | 40.0% | |
| AACATAGGTTGCAGTTAAGC+AGG | - | chr7_2:25764693-25764712 | Msa1054300:CDS | 40.0% | |
| ACATAGGTTGCAGTTAAGCA+GGG | - | chr7_2:25764694-25764713 | Msa1054300:CDS | 40.0% | |
| AACCAAACATCGATCTGTCT+AGG | + | chr7_2:25764734-25764753 | None:intergenic | 40.0% | |
| GAATAAAAGGGCTCAGATGA+AGG | - | chr7_2:25764757-25764776 | Msa1054300:intron | 40.0% | |
| TCTTATATAACTCACGTGGG+TGG | - | chr7_2:25764813-25764832 | Msa1054300:intron | 40.0% | |
| ACAAGGTTATTCCTCGGATT+AGG | - | chr7_2:25764860-25764879 | Msa1054300:intron | 40.0% | |
| ! | CTAATCATATGTGTCGGTGT+CGG | + | chr7_2:25764891-25764910 | None:intergenic | 40.0% |
| ATGAAATGCATTTGGGTCCT+TGG | + | chr7_2:25765537-25765556 | None:intergenic | 40.0% | |
| ! | ACAACGATTCCTTGTGGTTT+TGG | - | chr7_2:25765824-25765843 | Msa1054300:intron | 40.0% |
| AATGTTATCTGCAGCACTTG+TGG | - | chr7_2:25765951-25765970 | Msa1054300:intron | 40.0% | |
| CACATCCTTGTGAACAACAT+AGG | - | chr7_2:25764678-25764697 | Msa1054300:CDS | 40.0% | |
| TGCAACCTATGTTGTTCACA+AGG | + | chr7_2:25764686-25764705 | None:intergenic | 40.0% | |
| AACATAGGTTGCAGTTAAGC+AGG | - | chr7_2:25764693-25764712 | Msa1054300:CDS | 40.0% | |
| ACATAGGTTGCAGTTAAGCA+GGG | - | chr7_2:25764694-25764713 | Msa1054300:CDS | 40.0% | |
| AACCAAACATCGATCTGTCT+AGG | + | chr7_2:25764734-25764753 | None:intergenic | 40.0% | |
| GAATAAAAGGGCTCAGATGA+AGG | - | chr7_2:25764757-25764776 | Msa1054300:intron | 40.0% | |
| TCTTATATAACTCACGTGGG+TGG | - | chr7_2:25764813-25764832 | Msa1054300:intron | 40.0% | |
| ACAAGGTTATTCCTCGGATT+AGG | - | chr7_2:25764860-25764879 | Msa1054300:intron | 40.0% | |
| ! | CTAATCATATGTGTCGGTGT+CGG | + | chr7_2:25764891-25764910 | None:intergenic | 40.0% |
| ATGAAATGCATTTGGGTCCT+TGG | + | chr7_2:25765537-25765556 | None:intergenic | 40.0% | |
| ! | ACAACGATTCCTTGTGGTTT+TGG | - | chr7_2:25765824-25765843 | Msa1054300:intron | 40.0% |
| AATGTTATCTGCAGCACTTG+TGG | - | chr7_2:25765951-25765970 | Msa1054300:intron | 40.0% | |
| ATCGATCTGTCTAGGAGACA+AGG | + | chr7_2:25764726-25764745 | None:intergenic | 45.0% | |
| CTCCTAGACAGATCGATGTT+TGG | - | chr7_2:25764729-25764748 | Msa1054300:CDS | 45.0% | |
| AGCCGTTCCGATAAAATCAG+AGG | - | chr7_2:25764917-25764936 | Msa1054300:intron | 45.0% | |
| ! | GGCCTCTGATTTTATCGGAA+CGG | + | chr7_2:25764922-25764941 | None:intergenic | 45.0% |
| CATTTGGGTCCTTGGTATTG+AGG | + | chr7_2:25765529-25765548 | None:intergenic | 45.0% | |
| ATCGATCTGTCTAGGAGACA+AGG | + | chr7_2:25764726-25764745 | None:intergenic | 45.0% | |
| CTCCTAGACAGATCGATGTT+TGG | - | chr7_2:25764729-25764748 | Msa1054300:CDS | 45.0% | |
| AGCCGTTCCGATAAAATCAG+AGG | - | chr7_2:25764917-25764936 | Msa1054300:intron | 45.0% | |
| ! | GGCCTCTGATTTTATCGGAA+CGG | + | chr7_2:25764922-25764941 | None:intergenic | 45.0% |
| CATTTGGGTCCTTGGTATTG+AGG | + | chr7_2:25765529-25765548 | None:intergenic | 45.0% | |
| !! | ATAAAACAAAAAATAATAAA+GGG | + | chr7_2:25764616-25764635 | None:intergenic | 5.0% |
| !! | TATAAAACAAAAAATAATAA+AGG | + | chr7_2:25764617-25764636 | None:intergenic | 5.0% |
| !!! | TTATTATTTTTTGTTTTATA+TGG | - | chr7_2:25764617-25764636 | Msa1054300:CDS | 5.0% |
| !! | AAAAAATACTAAATATTTAA+AGG | - | chr7_2:25765330-25765349 | Msa1054300:intron | 5.0% |
| !! | ATAAAACAAAAAATAATAAA+GGG | + | chr7_2:25764616-25764635 | None:intergenic | 5.0% |
| !! | TATAAAACAAAAAATAATAA+AGG | + | chr7_2:25764617-25764636 | None:intergenic | 5.0% |
| !!! | TTATTATTTTTTGTTTTATA+TGG | - | chr7_2:25764617-25764636 | Msa1054300:CDS | 5.0% |
| !! | AAAAAATACTAAATATTTAA+AGG | - | chr7_2:25765330-25765349 | Msa1054300:intron | 5.0% |
| ACACTCCTCGTCAGACTCAA+AGG | - | chr7_2:25764549-25764568 | Msa1054300:intron | 50.0% | |
| TCAAGCCTTTGAGTCTGACG+AGG | + | chr7_2:25764557-25764576 | None:intergenic | 50.0% | |
| TTGAGGCTCCTATGATTGCG+AGG | - | chr7_2:25765654-25765673 | Msa1054300:intron | 50.0% | |
| AGCAAGCGCAAAGTGAGCTA+CGG | + | chr7_2:25765687-25765706 | None:intergenic | 50.0% | |
| ! | AGCTCACTTTGCGCTTGCTA+AGG | - | chr7_2:25765688-25765707 | Msa1054300:intron | 50.0% |
| ! | GCTCACTTTGCGCTTGCTAA+GGG | - | chr7_2:25765689-25765708 | Msa1054300:intron | 50.0% |
| TCAGTATAGTAGTCCAGGCC+CGG | + | chr7_2:25765715-25765734 | None:intergenic | 50.0% | |
| GTTATCTGCAGCACTTGTGG+TGG | - | chr7_2:25765954-25765973 | Msa1054300:intron | 50.0% | |
| ACACTCCTCGTCAGACTCAA+AGG | - | chr7_2:25764549-25764568 | Msa1054300:intron | 50.0% | |
| TCAAGCCTTTGAGTCTGACG+AGG | + | chr7_2:25764557-25764576 | None:intergenic | 50.0% | |
| TTGAGGCTCCTATGATTGCG+AGG | - | chr7_2:25765654-25765673 | Msa1054300:intron | 50.0% | |
| AGCAAGCGCAAAGTGAGCTA+CGG | + | chr7_2:25765687-25765706 | None:intergenic | 50.0% | |
| ! | AGCTCACTTTGCGCTTGCTA+AGG | - | chr7_2:25765688-25765707 | Msa1054300:intron | 50.0% |
| ! | GCTCACTTTGCGCTTGCTAA+GGG | - | chr7_2:25765689-25765708 | Msa1054300:intron | 50.0% |
| TCAGTATAGTAGTCCAGGCC+CGG | + | chr7_2:25765715-25765734 | None:intergenic | 50.0% | |
| GTTATCTGCAGCACTTGTGG+TGG | - | chr7_2:25765954-25765973 | Msa1054300:intron | 50.0% | |
| ! | GAGTCTGACGAGGAGTGTGA+CGG | + | chr7_2:25764547-25764566 | None:intergenic | 55.0% |
| ! | ACTTTGCGCTTGCTAAGGGC+CGG | - | chr7_2:25765693-25765712 | Msa1054300:intron | 55.0% |
| ! | GAGTCTGACGAGGAGTGTGA+CGG | + | chr7_2:25764547-25764566 | None:intergenic | 55.0% |
| ! | ACTTTGCGCTTGCTAAGGGC+CGG | - | chr7_2:25765693-25765712 | Msa1054300:intron | 55.0% |
| TGTCGGACACGCCTAATCCG+AGG | + | chr7_2:25764874-25764893 | None:intergenic | 60.0% | |
| GCTCCTATGATTGCGAGGCC+CGG | - | chr7_2:25765659-25765678 | Msa1054300:intron | 60.0% | |
| GCAAAGTGAGCTACGGTGCC+GGG | + | chr7_2:25765680-25765699 | None:intergenic | 60.0% | |
| CGCAAAGTGAGCTACGGTGC+CGG | + | chr7_2:25765681-25765700 | None:intergenic | 60.0% | |
| ! | CTTTGCGCTTGCTAAGGGCC+GGG | - | chr7_2:25765694-25765713 | Msa1054300:intron | 60.0% |
| TGTCGGACACGCCTAATCCG+AGG | + | chr7_2:25764874-25764893 | None:intergenic | 60.0% | |
| GCTCCTATGATTGCGAGGCC+CGG | - | chr7_2:25765659-25765678 | Msa1054300:intron | 60.0% | |
| GCAAAGTGAGCTACGGTGCC+GGG | + | chr7_2:25765680-25765699 | None:intergenic | 60.0% | |
| CGCAAAGTGAGCTACGGTGC+CGG | + | chr7_2:25765681-25765700 | None:intergenic | 60.0% | |
| ! | CTTTGCGCTTGCTAAGGGCC+GGG | - | chr7_2:25765694-25765713 | Msa1054300:intron | 60.0% |
| GTGCCGGGCCTCGCAATCAT+AGG | + | chr7_2:25765665-25765684 | None:intergenic | 65.0% | |
| GTGCCGGGCCTCGCAATCAT+AGG | + | chr7_2:25765665-25765684 | None:intergenic | 65.0% | |
| ! | CGCTTGCTAAGGGCCGGGCC+TGG | - | chr7_2:25765699-25765718 | Msa1054300:intron | 75.0% |
| ! | CGCTTGCTAAGGGCCGGGCC+TGG | - | chr7_2:25765699-25765718 | Msa1054300:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 25764479 | 25766136 | 25764479 | ID=Msa1054300;Name=Msa1054300 |
| chr7_2 | mRNA | 25764479 | 25766136 | 25764479 | ID=Msa1054300-mRNA-1;Parent=Msa1054300;Name=Msa1054300-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|0|0|0.75|0.66|0.5|4|0|139 |
| chr7_2 | exon | 25766036 | 25766136 | 25766036 | ID=Msa1054300-mRNA-1:exon:5551;Parent=Msa1054300-mRNA-1 |
| chr7_2 | exon | 25765837 | 25765954 | 25765837 | ID=Msa1054300-mRNA-1:exon:5550;Parent=Msa1054300-mRNA-1 |
| chr7_2 | exon | 25764562 | 25764754 | 25764562 | ID=Msa1054300-mRNA-1:exon:5549;Parent=Msa1054300-mRNA-1 |
| chr7_2 | exon | 25764479 | 25764486 | 25764479 | ID=Msa1054300-mRNA-1:exon:5548;Parent=Msa1054300-mRNA-1 |
| chr7_2 | CDS | 25766036 | 25766136 | 25766036 | ID=Msa1054300-mRNA-1:cds;Parent=Msa1054300-mRNA-1 |
| chr7_2 | CDS | 25765837 | 25765954 | 25765837 | ID=Msa1054300-mRNA-1:cds;Parent=Msa1054300-mRNA-1 |
| chr7_2 | CDS | 25764562 | 25764754 | 25764562 | ID=Msa1054300-mRNA-1:cds;Parent=Msa1054300-mRNA-1 |
| chr7_2 | CDS | 25764479 | 25764486 | 25764479 | ID=Msa1054300-mRNA-1:cds;Parent=Msa1054300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
