Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1055070 | XP_013442252.2 | 78.679 | 333 | 24 | 3 | 1 | 331 | 1 | 288 | 0.0 | 519 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1055070 | sp|Q1PF16|BH019_ARATH | 42.708 | 192 | 95 | 7 | 147 | 324 | 103 | 293 | 4.60e-42 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1055070 | A0A072TFX4 | 78.387 | 310 | 20 | 3 | 24 | 331 | 1 | 265 | 1.69e-170 | 483 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1055070 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1055070 | MtrunA17_Chr6g0468491 | 71.517 | 323 | 68 | 6 | 24 | 331 | 1 | 314 | 2.61e-156 | 440 |
| Msa1055070 | MtrunA17_Chr7g0225901 | 77.273 | 286 | 18 | 3 | 24 | 307 | 1 | 241 | 1.39e-155 | 436 |
| Msa1055070 | MtrunA17_Chr2g0307131 | 65.097 | 361 | 89 | 8 | 1 | 330 | 1 | 355 | 7.35e-149 | 422 |
| Msa1055070 | MtrunA17_Chr2g0307141 | 65.289 | 363 | 91 | 8 | 1 | 331 | 1 | 360 | 1.64e-140 | 402 |
| Msa1055070 | MtrunA17_Chr4g0033291 | 63.768 | 345 | 95 | 9 | 1 | 331 | 1 | 329 | 9.97e-134 | 383 |
| Msa1055070 | MtrunA17_Chr4g0033391 | 63.609 | 338 | 95 | 9 | 1 | 329 | 1 | 319 | 4.50e-133 | 382 |
| Msa1055070 | MtrunA17_Chr4g0033281 | 60.571 | 350 | 93 | 9 | 1 | 330 | 1 | 325 | 4.74e-121 | 351 |
| Msa1055070 | MtrunA17_Chr6g0468461 | 62.090 | 335 | 74 | 10 | 1 | 306 | 1 | 311 | 1.86e-119 | 348 |
| Msa1055070 | MtrunA17_Chr4g0054581 | 51.804 | 388 | 121 | 11 | 1 | 331 | 1 | 379 | 5.12e-110 | 325 |
| Msa1055070 | MtrunA17_Chr4g0054621 | 46.175 | 366 | 138 | 15 | 1 | 331 | 1 | 342 | 2.68e-79 | 245 |
| Msa1055070 | MtrunA17_Chr5g0400621 | 43.077 | 325 | 162 | 8 | 18 | 330 | 20 | 333 | 8.68e-61 | 197 |
| Msa1055070 | MtrunA17_Chr5g0400661 | 36.152 | 343 | 174 | 11 | 14 | 326 | 7 | 334 | 5.52e-51 | 172 |
| Msa1055070 | MtrunA17_Chr2g0280161 | 45.714 | 210 | 94 | 5 | 133 | 329 | 151 | 353 | 2.22e-49 | 168 |
| Msa1055070 | MtrunA17_Chr5g0400641 | 54.268 | 164 | 64 | 5 | 159 | 315 | 1 | 160 | 2.74e-47 | 157 |
| Msa1055070 | MtrunA17_Chr4g0054561 | 38.235 | 272 | 151 | 7 | 64 | 321 | 52 | 320 | 5.85e-45 | 156 |
| Msa1055070 | MtrunA17_Chr4g0002801 | 43.243 | 222 | 103 | 9 | 125 | 327 | 114 | 331 | 2.33e-44 | 154 |
| Msa1055070 | MtrunA17_Chr4g0054551 | 35.662 | 272 | 158 | 6 | 64 | 321 | 52 | 320 | 8.93e-43 | 150 |
| Msa1055070 | MtrunA17_Chr4g0049331 | 43.158 | 190 | 94 | 4 | 148 | 329 | 127 | 310 | 1.07e-40 | 144 |
| Msa1055070 | MtrunA17_Chr4g0002781 | 38.839 | 224 | 114 | 7 | 125 | 327 | 129 | 350 | 4.00e-40 | 144 |
| Msa1055070 | MtrunA17_Chr8g0336681 | 44.134 | 179 | 87 | 5 | 155 | 322 | 155 | 331 | 1.72e-38 | 139 |
| Msa1055070 | MtrunA17_Chr5g0400671 | 44.633 | 177 | 91 | 4 | 153 | 326 | 151 | 323 | 2.84e-37 | 135 |
| Msa1055070 | MtrunA17_Chr4g0054571 | 35.474 | 327 | 174 | 12 | 14 | 328 | 30 | 331 | 5.45e-37 | 135 |
| Msa1055070 | MtrunA17_Chr7g0249811 | 38.835 | 206 | 115 | 3 | 124 | 327 | 133 | 329 | 2.25e-36 | 134 |
| Msa1055070 | MtrunA17_Chr2g0333641 | 40.107 | 187 | 104 | 5 | 139 | 321 | 120 | 302 | 8.57e-36 | 131 |
| Msa1055070 | MtrunA17_Chr2g0333621 | 39.594 | 197 | 112 | 4 | 139 | 330 | 121 | 315 | 1.13e-35 | 131 |
| Msa1055070 | MtrunA17_Chr2g0333541 | 39.269 | 219 | 122 | 4 | 112 | 325 | 55 | 267 | 1.44e-35 | 130 |
| Msa1055070 | MtrunA17_Chr2g0333611 | 36.932 | 176 | 103 | 3 | 157 | 328 | 46 | 217 | 3.04e-31 | 117 |
| Msa1055070 | MtrunA17_Chr4g0002851 | 34.839 | 155 | 67 | 4 | 179 | 324 | 65 | 194 | 1.59e-21 | 90.5 |
| Msa1055070 | MtrunA17_Chr7g0233441 | 36.242 | 149 | 81 | 5 | 179 | 324 | 57 | 194 | 2.46e-20 | 87.4 |
| Msa1055070 | MtrunA17_Chr4g0002831 | 32.143 | 168 | 88 | 5 | 166 | 324 | 52 | 202 | 1.15e-18 | 83.2 |
| Msa1055070 | MtrunA17_Chr8g0366751 | 33.140 | 172 | 95 | 5 | 135 | 287 | 434 | 604 | 6.79e-17 | 81.6 |
| Msa1055070 | MtrunA17_Chr1g0185621 | 29.268 | 164 | 98 | 4 | 142 | 290 | 457 | 617 | 1.84e-15 | 77.4 |
| Msa1055070 | MtrunA17_Chr8g0346151 | 33.613 | 119 | 65 | 3 | 156 | 265 | 279 | 392 | 3.54e-15 | 75.9 |
| Msa1055070 | MtrunA17_Chr8g0346161 | 29.167 | 168 | 92 | 5 | 138 | 285 | 263 | 423 | 2.02e-14 | 73.9 |
| Msa1055070 | MtrunA17_Chr5g0411341 | 31.098 | 164 | 93 | 5 | 142 | 287 | 474 | 635 | 3.47e-14 | 73.6 |
| Msa1055070 | MtrunA17_Chr8g0386921 | 42.466 | 73 | 42 | 0 | 148 | 220 | 398 | 470 | 7.80e-13 | 69.3 |
| Msa1055070 | MtrunA17_Chr7g0275821 | 31.343 | 134 | 82 | 3 | 156 | 288 | 252 | 376 | 1.19e-12 | 68.2 |
| Msa1055070 | MtrunA17_Chr7g0260841 | 29.000 | 200 | 111 | 8 | 79 | 247 | 252 | 451 | 1.20e-12 | 68.6 |
| Msa1055070 | MtrunA17_Chr3g0131691 | 28.659 | 164 | 101 | 3 | 135 | 285 | 277 | 437 | 1.51e-12 | 68.2 |
| Msa1055070 | MtrunA17_Chr1g0211081 | 30.814 | 172 | 88 | 7 | 137 | 277 | 295 | 466 | 4.29e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1055070 | AT2G22760.1 | 42.708 | 192 | 95 | 7 | 147 | 324 | 103 | 293 | 4.67e-43 | 150 |
| Msa1055070 | AT4G37850.2 | 41.951 | 205 | 102 | 6 | 139 | 329 | 127 | 328 | 3.32e-42 | 149 |
| Msa1055070 | AT4G37850.1 | 41.951 | 205 | 102 | 6 | 139 | 329 | 127 | 328 | 3.32e-42 | 149 |
| Msa1055070 | AT2G22750.2 | 44.162 | 197 | 99 | 5 | 140 | 328 | 111 | 304 | 1.62e-36 | 134 |
| Msa1055070 | AT2G22750.3 | 44.162 | 197 | 99 | 5 | 140 | 328 | 139 | 332 | 2.11e-36 | 134 |
| Msa1055070 | AT2G22750.5 | 44.162 | 197 | 99 | 5 | 140 | 328 | 135 | 328 | 2.18e-36 | 134 |
| Msa1055070 | AT2G22760.2 | 41.618 | 173 | 87 | 6 | 147 | 306 | 103 | 274 | 2.23e-35 | 130 |
| Msa1055070 | AT2G22750.1 | 44.162 | 197 | 98 | 6 | 140 | 328 | 111 | 303 | 4.46e-35 | 130 |
| Msa1055070 | AT2G22750.4 | 44.162 | 197 | 98 | 6 | 140 | 328 | 139 | 331 | 6.29e-35 | 130 |
| Msa1055070 | AT2G22770.1 | 37.557 | 221 | 108 | 6 | 133 | 324 | 98 | 317 | 2.34e-33 | 125 |
| Msa1055070 | AT4G17880.1 | 35.758 | 165 | 88 | 5 | 142 | 291 | 397 | 558 | 5.69e-17 | 82.0 |
| Msa1055070 | AT1G32640.1 | 32.847 | 137 | 83 | 2 | 156 | 287 | 452 | 584 | 2.82e-16 | 80.1 |
| Msa1055070 | AT5G46760.1 | 32.143 | 168 | 94 | 7 | 142 | 291 | 396 | 561 | 3.14e-15 | 77.0 |
| Msa1055070 | AT1G63650.3 | 28.571 | 140 | 82 | 3 | 156 | 277 | 405 | 544 | 2.19e-13 | 71.2 |
| Msa1055070 | AT1G63650.1 | 28.571 | 140 | 82 | 3 | 156 | 277 | 405 | 544 | 2.19e-13 | 71.2 |
| Msa1055070 | AT1G63650.2 | 28.571 | 140 | 82 | 3 | 156 | 277 | 405 | 544 | 2.19e-13 | 71.2 |
| Msa1055070 | AT2G46510.1 | 44.304 | 79 | 39 | 2 | 142 | 215 | 376 | 454 | 1.10e-12 | 69.3 |
| Msa1055070 | AT4G16430.1 | 42.683 | 82 | 42 | 1 | 140 | 216 | 299 | 380 | 1.13e-12 | 68.9 |
| Msa1055070 | AT1G01260.1 | 34.821 | 112 | 63 | 2 | 146 | 250 | 416 | 524 | 1.22e-12 | 68.9 |
| Msa1055070 | AT1G01260.2 | 34.821 | 112 | 63 | 2 | 146 | 250 | 416 | 524 | 1.22e-12 | 68.9 |
| Msa1055070 | AT1G01260.3 | 34.821 | 112 | 63 | 2 | 146 | 250 | 416 | 524 | 1.22e-12 | 68.9 |
| Msa1055070 | AT5G41315.1 | 26.901 | 171 | 101 | 3 | 156 | 302 | 441 | 611 | 2.20e-12 | 68.2 |
| Msa1055070 | AT5G41315.2 | 26.901 | 171 | 101 | 3 | 156 | 302 | 449 | 619 | 2.24e-12 | 68.2 |
| Msa1055070 | AT5G41315.3 | 26.901 | 171 | 101 | 3 | 156 | 302 | 446 | 616 | 2.27e-12 | 68.2 |
Find 47 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTTGTAGTGGATGAATT+TGG | 0.179475 | 7_2:+28322377 | None:intergenic |
| CAAGTGGAAGCAAGAGTCTT+AGG | 0.227099 | 7_2:-28321205 | Msa1055070:CDS |
| CAACAGCTGGTTATCTGATT+TGG | 0.283101 | 7_2:-28324324 | Msa1055070:intron |
| AATTTGTAGTGGATGAATTT+GGG | 0.291366 | 7_2:+28322378 | None:intergenic |
| TCCACATCTATAAGGAAATT+CGG | 0.302534 | 7_2:+28322590 | None:intergenic |
| ACAAATTCCTTACAATTTAG+TGG | 0.309622 | 7_2:-28322362 | Msa1055070:CDS |
| GTTGTTAATGTCTTACCTTT+TGG | 0.323196 | 7_2:-28321094 | Msa1055070:CDS |
| GATGAGTTAGAAGAAAGTTT+TGG | 0.345146 | 7_2:+28322434 | None:intergenic |
| CAGAAGAGTCATCGAGAAAA+AGG | 0.350658 | 7_2:-28322274 | Msa1055070:CDS |
| TTCAAATCCACTAAATTGTA+AGG | 0.351709 | 7_2:+28322355 | None:intergenic |
| GGGACTTATAGTTAAAATTA+TGG | 0.357813 | 7_2:-28321143 | Msa1055070:CDS |
| GAAGCTCTTCCACATCTATA+AGG | 0.379411 | 7_2:+28322582 | None:intergenic |
| ACTCTTGCTTCCACTTGAAA+TGG | 0.394913 | 7_2:+28321211 | None:intergenic |
| GTCCCCTGTGCTCTTGGCAT+TGG | 0.400312 | 7_2:+28321161 | None:intergenic |
| CCACATCTATAAGGAAATTC+GGG | 0.402643 | 7_2:+28322591 | None:intergenic |
| CTATAAGTCCCCTGTGCTCT+TGG | 0.402896 | 7_2:+28321155 | None:intergenic |
| ATCAACAATGTTTGACTTCG+AGG | 0.419284 | 7_2:-28322520 | Msa1055070:CDS |
| ACCAGTGTCTCCAACTGAAA+TGG | 0.420736 | 7_2:-28322324 | Msa1055070:CDS |
| TAGGGAAATATATGTTGATT+CGG | 0.438258 | 7_2:-28321186 | Msa1055070:CDS |
| ATCACTATAAATGCCTGGTT+TGG | 0.451938 | 7_2:+28321282 | None:intergenic |
| AAGTGGAAGCAAGAGTCTTA+GGG | 0.455524 | 7_2:-28321204 | Msa1055070:CDS |
| GAGAACCTTCATAGTGTTGT+TGG | 0.457272 | 7_2:-28321238 | Msa1055070:CDS |
| TCCATTTCAGTTGGAGACAC+TGG | 0.482760 | 7_2:+28322323 | None:intergenic |
| GGATCCAATGCCAAGAGCAC+AGG | 0.490309 | 7_2:-28321165 | Msa1055070:CDS |
| GGTCTCTACCTGAGCAATGA+TGG | 0.493468 | 7_2:+28321051 | None:intergenic |
| AAAAGGTCTCGTGGTAATCA+TGG | 0.510954 | 7_2:-28322257 | Msa1055070:CDS |
| CAAGTGGTTGTGACCAAACC+AGG | 0.515887 | 7_2:-28321295 | Msa1055070:CDS |
| AGGTTACAACATGAACATAA+AGG | 0.516117 | 7_2:-28320479 | Msa1055070:CDS |
| AAATTATGGTCGAAATTCAA+AGG | 0.523147 | 7_2:-28321129 | Msa1055070:CDS |
| CGACGTGACCATCATTGCTC+AGG | 0.526856 | 7_2:-28321059 | Msa1055070:intron |
| TTGTCATCACTATAAATGCC+TGG | 0.527391 | 7_2:+28321277 | None:intergenic |
| CCCGAATTTCCTTATAGATG+TGG | 0.531562 | 7_2:-28322591 | Msa1055070:CDS |
| CGAATACAATTTAATTGCTG+AGG | 0.543999 | 7_2:-28322621 | Msa1055070:CDS |
| TCATGGTCATGATCATATCA+TGG | 0.552733 | 7_2:-28322240 | Msa1055070:CDS |
| GTAAACCAACAACACTATGA+AGG | 0.554409 | 7_2:+28321233 | None:intergenic |
| CAAATCAGATAACCAGCTGT+TGG | 0.564229 | 7_2:+28324325 | None:intergenic |
| AAGGTTCTCATCACATGAAG+AGG | 0.579692 | 7_2:+28321252 | None:intergenic |
| GATCCAATGCCAAGAGCACA+GGG | 0.583908 | 7_2:-28321164 | Msa1055070:CDS |
| TTTGGGGTGTTGTCAAAACA+TGG | 0.585137 | 7_2:+28322395 | None:intergenic |
| TCGATGATAGAATCTCCAAA+AGG | 0.598134 | 7_2:+28321079 | None:intergenic |
| AATCGACATCAACCAACAGC+TGG | 0.599243 | 7_2:-28324337 | Msa1055070:CDS |
| TGTTGGTTTACCATTTCAAG+TGG | 0.603001 | 7_2:-28321221 | Msa1055070:CDS |
| GTTGCTGAGAGTTGTGTGAG+TGG | 0.604875 | 7_2:+28322496 | None:intergenic |
| AAATTGTAAGGAATTTGTAG+TGG | 0.612033 | 7_2:+28322367 | None:intergenic |
| ATTTGTAGTGGATGAATTTG+GGG | 0.649171 | 7_2:+28322379 | None:intergenic |
| ACTTGTGAAGAACATACGCA+TGG | 0.680721 | 7_2:-28320455 | Msa1055070:CDS |
| ATCCAATGCCAAGAGCACAG+GGG | 0.782046 | 7_2:-28321163 | Msa1055070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTGAAAATAATTTAAATTA+GGG | - | chr7_2:28320642-28320661 | Msa1055070:intron | 10.0% |
| !!! | AAAATTTAAAACATAATTAG+TGG | - | chr7_2:28323205-28323224 | Msa1055070:intron | 10.0% |
| !!! | TAATACAATTTTTTAGTTTT+TGG | - | chr7_2:28323986-28324005 | Msa1055070:intron | 10.0% |
| !!! | AATCTTAATTATTTTATAGA+TGG | - | chr7_2:28324291-28324310 | Msa1055070:intron | 10.0% |
| !! | GCTTGAAAATAATTTAAATT+AGG | - | chr7_2:28320641-28320660 | Msa1055070:intron | 15.0% |
| !! | AATATAAACATAGTACAAAA+TGG | + | chr7_2:28320994-28321013 | None:intergenic | 15.0% |
| !!! | TTTTTTTTAAGAAGCTAAAA+TGG | - | chr7_2:28321022-28321041 | Msa1055070:intron | 15.0% |
| !! | TCCTATTTATAAGAAAAAAT+TGG | - | chr7_2:28321680-28321699 | Msa1055070:intron | 15.0% |
| !! | CCTATTTATAAGAAAAAATT+GGG | - | chr7_2:28321681-28321700 | Msa1055070:intron | 15.0% |
| !! | ATCAAAAGATATTCAATATT+TGG | + | chr7_2:28322878-28322897 | None:intergenic | 15.0% |
| !! | AAAAATAATCGTCAATTTAT+TGG | - | chr7_2:28323000-28323019 | Msa1055070:intron | 15.0% |
| !! | AGTAAATGAATAAAGAAATA+TGG | - | chr7_2:28323080-28323099 | Msa1055070:intron | 15.0% |
| !! | ATACAAAAATACTATAATCT+TGG | - | chr7_2:28323320-28323339 | Msa1055070:intron | 15.0% |
| !! | TTGTATTAAAAAAATGTTAG+TGG | + | chr7_2:28323974-28323993 | None:intergenic | 15.0% |
| !! | TATAATAATAGTAATAGTGA+TGG | + | chr7_2:28324014-28324033 | None:intergenic | 15.0% |
| !! | ATAATTGTTATCATCTTAAA+AGG | - | chr7_2:28324063-28324082 | Msa1055070:intron | 15.0% |
| !! | CATTTCTGAATTTAGAAAAT+AGG | + | chr7_2:28320528-28320547 | None:intergenic | 20.0% |
| !!! | CTATTTTCTAAATTCAGAAA+TGG | - | chr7_2:28320526-28320545 | Msa1055070:intron | 20.0% |
| !!! | TTATCCATTTTGTTTGTAAT+AGG | + | chr7_2:28320786-28320805 | None:intergenic | 20.0% |
| !! | GTGAATTTAGAAAATAGAAA+GGG | + | chr7_2:28320882-28320901 | None:intergenic | 20.0% |
| !! | TGTGAATTTAGAAAATAGAA+AGG | + | chr7_2:28320883-28320902 | None:intergenic | 20.0% |
| !!! | CTATTTTCTAAATTCACAAA+TGG | - | chr7_2:28320885-28320904 | Msa1055070:intron | 20.0% |
| !! | GTTAATGTTATGAAATGTTT+AGG | + | chr7_2:28321192-28321211 | None:intergenic | 20.0% |
| !!! | TTGCTGAAACATTATATTTT+AGG | + | chr7_2:28321238-28321257 | None:intergenic | 20.0% |
| !! | TAATCATTTGATACATCATT+GGG | + | chr7_2:28321310-28321329 | None:intergenic | 20.0% |
| !! | ATAATCATTTGATACATCAT+TGG | + | chr7_2:28321311-28321330 | None:intergenic | 20.0% |
| !!! | TGTTAGTATGACTTTTAAAA+AGG | - | chr7_2:28321426-28321445 | Msa1055070:intron | 20.0% |
| !! | AAAGGAAATTGATTGTATAT+TGG | - | chr7_2:28321444-28321463 | Msa1055070:intron | 20.0% |
| !! | TTGTTTGTAATATGAATGTT+TGG | - | chr7_2:28321482-28321501 | Msa1055070:intron | 20.0% |
| !!! | TCCCTTAATATGATTTTTTT+TGG | - | chr7_2:28321542-28321561 | Msa1055070:intron | 20.0% |
| !! | GCCAAAAAAAATCATATTAA+GGG | + | chr7_2:28321546-28321565 | None:intergenic | 20.0% |
| !!! | ATTGTAGAAGTATTAAACAT+AGG | + | chr7_2:28321593-28321612 | None:intergenic | 20.0% |
| !! | ATATAAATTAATACTCTCTC+CGG | - | chr7_2:28321657-28321676 | Msa1055070:intron | 20.0% |
| !!! | TTTTTTCTTATAAATAGGAC+CGG | + | chr7_2:28321679-28321698 | None:intergenic | 20.0% |
| !!! | CCCAATTTTTTCTTATAAAT+AGG | + | chr7_2:28321684-28321703 | None:intergenic | 20.0% |
| !! | CATTTGTGAATTTCAAAAAT+AGG | + | chr7_2:28322070-28322089 | None:intergenic | 20.0% |
| !!! | CTATTTTTGAAATTCACAAA+TGG | - | chr7_2:28322068-28322087 | Msa1055070:intron | 20.0% |
| !!! | ATTAAATTTTGTTCGATGAA+AGG | + | chr7_2:28322827-28322846 | None:intergenic | 20.0% |
| !! | AATGAATAAAGAAATATGGT+TGG | - | chr7_2:28323084-28323103 | Msa1055070:intron | 20.0% |
| !! | ATAATCTTGGTTACATTATT+TGG | - | chr7_2:28323333-28323352 | Msa1055070:intron | 20.0% |
| !! | CGATATTGTAAAAATATGTT+AGG | - | chr7_2:28323375-28323394 | Msa1055070:intron | 20.0% |
| !! | TATTGTAAAAATATGTTAGG+TGG | - | chr7_2:28323378-28323397 | Msa1055070:intron | 20.0% |
| !!! | TAAAAGGAGTATTTTATTCT+AGG | - | chr7_2:28324079-28324098 | Msa1055070:intron | 20.0% |
| !!! | ACTACAACATTTTTTGTTTT+AGG | - | chr7_2:28324114-28324133 | Msa1055070:intron | 20.0% |
| !!! | AATTTGTTGTCTTTTGATTT+CGG | - | chr7_2:28324230-28324249 | Msa1055070:intron | 20.0% |
| !!! | ATTATTTTATAGATGGATGA+AGG | - | chr7_2:28324298-28324317 | Msa1055070:intron | 20.0% |
| !! | GATTTGGTAAGAAAATCAAA+AGG | - | chr7_2:28320489-28320508 | Msa1055070:CDS | 25.0% |
| ! | CTGAATTTAGAAAATAGGAA+GGG | + | chr7_2:28320523-28320542 | None:intergenic | 25.0% |
| ! | TCTGAATTTAGAAAATAGGA+AGG | + | chr7_2:28320524-28320543 | None:intergenic | 25.0% |
| ! | ATATTTCCGAATATAAAGTG+GGG | + | chr7_2:28320682-28320701 | None:intergenic | 25.0% |
| ! | CATATTTCCGAATATAAAGT+GGG | + | chr7_2:28320683-28320702 | None:intergenic | 25.0% |
| ! | ACATATTTCCGAATATAAAG+TGG | + | chr7_2:28320684-28320703 | None:intergenic | 25.0% |
| ! | GAATCCAATTCTTAAACATT+CGG | - | chr7_2:28320727-28320746 | Msa1055070:intron | 25.0% |
| ! | CTATCCTATTACAAACAAAA+TGG | - | chr7_2:28320779-28320798 | Msa1055070:intron | 25.0% |
| !! | TTTTCTAAATTCACAAATGG+TGG | - | chr7_2:28320888-28320907 | Msa1055070:intron | 25.0% |
| ! | ATGTTATGAAATGTTTAGGT+GGG | + | chr7_2:28321188-28321207 | None:intergenic | 25.0% |
| ! | AATGTTATGAAATGTTTAGG+TGG | + | chr7_2:28321189-28321208 | None:intergenic | 25.0% |
| ! | TGATTATATATTAACCCACT+TGG | - | chr7_2:28321324-28321343 | Msa1055070:CDS | 25.0% |
| ! | TATGAATGTTTGGCATAATT+AGG | - | chr7_2:28321492-28321511 | Msa1055070:intron | 25.0% |
| ! | CGCCAAAAAAAATCATATTA+AGG | + | chr7_2:28321547-28321566 | None:intergenic | 25.0% |
| !! | CTCAAGTTTTTCTTGTAAAT+AGG | - | chr7_2:28321763-28321782 | Msa1055070:intron | 25.0% |
| ! | ATATTAAATTATACTCCCTC+CGG | + | chr7_2:28321790-28321809 | None:intergenic | 25.0% |
| !!! | CTTACGGTTTTTAGAATATA+AGG | + | chr7_2:28321875-28321894 | None:intergenic | 25.0% |
| ! | GTGAATTTCAAAAATAGGAA+GGG | + | chr7_2:28322065-28322084 | None:intergenic | 25.0% |
| ! | TGTGAATTTCAAAAATAGGA+AGG | + | chr7_2:28322066-28322085 | None:intergenic | 25.0% |
| !!! | TTGTTGATTGTTTTGTTCTT+GGG | + | chr7_2:28322265-28322284 | None:intergenic | 25.0% |
| !!! | ATTGTTGATTGTTTTGTTCT+TGG | + | chr7_2:28322266-28322285 | None:intergenic | 25.0% |
| !!! | AATTTGTAGTGGATGAATTT+GGG | + | chr7_2:28322422-28322441 | None:intergenic | 25.0% |
| ! | AAATTGTAAGGAATTTGTAG+TGG | + | chr7_2:28322433-28322452 | None:intergenic | 25.0% |
| ! | ACAAATTCCTTACAATTTAG+TGG | - | chr7_2:28322435-28322454 | Msa1055070:CDS | 25.0% |
| ! | TTCAAATCCACTAAATTGTA+AGG | + | chr7_2:28322445-28322464 | None:intergenic | 25.0% |
| !! | TTCATATTTTCCATTTCAGT+TGG | + | chr7_2:28322486-28322505 | None:intergenic | 25.0% |
| !!! | TTACTTCTTCTACCTTTTTT+AGG | + | chr7_2:28322647-28322666 | None:intergenic | 25.0% |
| !!! | ATTTTAAAAGCTAGCTAAGT+GGG | + | chr7_2:28322680-28322699 | None:intergenic | 25.0% |
| ! | CGCTATATTTACAAATTGAA+GGG | + | chr7_2:28323049-28323068 | None:intergenic | 25.0% |
| ! | ACGCTATATTTACAAATTGA+AGG | + | chr7_2:28323050-28323069 | None:intergenic | 25.0% |
| ! | TTAAAACATAATTAGTGGTG+TGG | - | chr7_2:28323210-28323229 | Msa1055070:intron | 25.0% |
| !! | GTGGTAAAAAATACTTTTGA+CGG | - | chr7_2:28323232-28323251 | Msa1055070:intron | 25.0% |
| !! | TAGGGAAATATATGTTGATT+CGG | - | chr7_2:28323611-28323630 | Msa1055070:intron | 25.0% |
| ! | GGGACTTATAGTTAAAATTA+TGG | - | chr7_2:28323654-28323673 | Msa1055070:intron | 25.0% |
| ! | AAATTATGGTCGAAATTCAA+AGG | - | chr7_2:28323668-28323687 | Msa1055070:intron | 25.0% |
| ! | ATAGAGTCATAAAGAGATAT+TGG | + | chr7_2:28323770-28323789 | None:intergenic | 25.0% |
| !! | TGGAGAATGCTTAATTATTT+TGG | + | chr7_2:28323831-28323850 | None:intergenic | 25.0% |
| ! | ATGTTAGTGGCAAAATTAAA+GGG | + | chr7_2:28323961-28323980 | None:intergenic | 25.0% |
| ! | AATGTTAGTGGCAAAATTAA+AGG | + | chr7_2:28323962-28323981 | None:intergenic | 25.0% |
| ! | AACAAAAAATGTTGTAGTGT+TGG | + | chr7_2:28324112-28324131 | None:intergenic | 25.0% |
| ! | GTTTTACCCCACTTTATATT+CGG | - | chr7_2:28320673-28320692 | Msa1055070:intron | 30.0% |
| TTTGCCGAATGTTTAAGAAT+TGG | + | chr7_2:28320734-28320753 | None:intergenic | 30.0% | |
| TAGGATAGTTTCTCAATTAC+TGG | + | chr7_2:28320767-28320786 | None:intergenic | 30.0% | |
| ! | ACACTCAACTTGAAATGTTT+TGG | + | chr7_2:28320950-28320969 | None:intergenic | 30.0% |
| AGCATTTGTATGTGAAATCT+GGG | + | chr7_2:28321070-28321089 | None:intergenic | 30.0% | |
| AAGCATTTGTATGTGAAATC+TGG | + | chr7_2:28321071-28321090 | None:intergenic | 30.0% | |
| ! | CTTGAGTTTTTACAGAAAGA+AGG | + | chr7_2:28321124-28321143 | None:intergenic | 30.0% |
| ! | CAAAGCTACTTTCAATTCAA+AGG | + | chr7_2:28321153-28321172 | None:intergenic | 30.0% |
| TTATATATTAACCCACTTGG+CGG | - | chr7_2:28321327-28321346 | Msa1055070:CDS | 30.0% | |
| TCATACTAACACATCGAAAT+TGG | + | chr7_2:28321417-28321436 | None:intergenic | 30.0% | |
| CATTAGTTATGCATAAGGAA+AGG | + | chr7_2:28321518-28321537 | None:intergenic | 30.0% | |
| AGATGCATTAGTTATGCATA+AGG | + | chr7_2:28321523-28321542 | None:intergenic | 30.0% | |
| ! | GTTTTTCTTGTAAATAGGAC+CGG | - | chr7_2:28321768-28321787 | Msa1055070:intron | 30.0% |
| TGTACTTACTCATTTCCAAA+AGG | - | chr7_2:28322030-28322049 | Msa1055070:intron | 30.0% | |
| AATTTCAAAAATAGGAAGGG+TGG | + | chr7_2:28322062-28322081 | None:intergenic | 30.0% | |
| !!! | CTTGAAATTTCCTTTTTTGC+AGG | - | chr7_2:28322146-28322165 | Msa1055070:intron | 30.0% |
| CGAATACAATTTAATTGCTG+AGG | - | chr7_2:28322176-28322195 | Msa1055070:CDS | 30.0% | |
| TCCACATCTATAAGGAAATT+CGG | + | chr7_2:28322210-28322229 | None:intergenic | 30.0% | |
| !! | AGAAGAAAGTTTTGGTGAAA+AGG | + | chr7_2:28322358-28322377 | None:intergenic | 30.0% |
| ! | GATGAGTTAGAAGAAAGTTT+TGG | + | chr7_2:28322366-28322385 | None:intergenic | 30.0% |
| !! | ATTTGTAGTGGATGAATTTG+GGG | + | chr7_2:28322421-28322440 | None:intergenic | 30.0% |
| !! | GAATTTGTAGTGGATGAATT+TGG | + | chr7_2:28322423-28322442 | None:intergenic | 30.0% |
| TCTTGTTCCTAACCTAAAAA+AGG | - | chr7_2:28322632-28322651 | Msa1055070:CDS | 30.0% | |
| !!! | TCTTCTACCTTTTTTAGGTT+AGG | + | chr7_2:28322642-28322661 | None:intergenic | 30.0% |
| !! | GATTTTAAAAGCTAGCTAAG+TGG | + | chr7_2:28322681-28322700 | None:intergenic | 30.0% |
| !!! | TAAAAAGCGTTTGGAAGTTT+TGG | - | chr7_2:28323447-28323466 | Msa1055070:intron | 30.0% |
| AACAAAAATAGAGTCACAAG+TGG | - | chr7_2:28323486-28323505 | Msa1055070:intron | 30.0% | |
| ! | GTTGTTAATGTCTTACCTTT+TGG | - | chr7_2:28323703-28323722 | Msa1055070:intron | 30.0% |
| !!! | GTTTGAAACATCTTGTTTTG+TGG | + | chr7_2:28323851-28323870 | None:intergenic | 30.0% |
| CAACACCAAAACAATCAAAA+GGG | - | chr7_2:28323921-28323940 | Msa1055070:intron | 30.0% | |
| !! | CTTTACCCTTTTGATTGTTT+TGG | + | chr7_2:28323929-28323948 | None:intergenic | 30.0% |
| AGGTTACAACATGAACATAA+AGG | - | chr7_2:28324318-28324337 | Msa1055070:intron | 30.0% | |
| ! | GGAGGAAATTTCAAGTGTTA+AGG | + | chr7_2:28320929-28320948 | None:intergenic | 35.0% |
| !! | CTCAACTTGAAATGTTTTGG+AGG | + | chr7_2:28320947-28320966 | None:intergenic | 35.0% |
| AACATAGGAGCCTAAATATG+AGG | + | chr7_2:28321578-28321597 | None:intergenic | 35.0% | |
| TCGTTCATTTCCTGCAAAAA+AGG | + | chr7_2:28322159-28322178 | None:intergenic | 35.0% | |
| CCACATCTATAAGGAAATTC+GGG | + | chr7_2:28322209-28322228 | None:intergenic | 35.0% | |
| ! | ATCAACAATGTTTGACTTCG+AGG | - | chr7_2:28322277-28322296 | Msa1055070:CDS | 35.0% |
| TCATGGTCATGATCATATCA+TGG | - | chr7_2:28322557-28322576 | Msa1055070:CDS | 35.0% | |
| AAACATAATTAGTGGTGTGG+TGG | - | chr7_2:28323213-28323232 | Msa1055070:intron | 35.0% | |
| !! | GAAAGAGCTTAAAAAGCGTT+TGG | - | chr7_2:28323438-28323457 | Msa1055070:intron | 35.0% |
| ATCACTATAAATGCCTGGTT+TGG | + | chr7_2:28323518-28323537 | None:intergenic | 35.0% | |
| TTGTCATCACTATAAATGCC+TGG | + | chr7_2:28323523-28323542 | None:intergenic | 35.0% | |
| GTAAACCAACAACACTATGA+AGG | + | chr7_2:28323567-28323586 | None:intergenic | 35.0% | |
| !! | TGTTGGTTTACCATTTCAAG+TGG | - | chr7_2:28323576-28323595 | Msa1055070:intron | 35.0% |
| TCGATGATAGAATCTCCAAA+AGG | + | chr7_2:28323721-28323740 | None:intergenic | 35.0% | |
| !!! | CCTTTTGATTGTTTTGGTGT+TGG | + | chr7_2:28323923-28323942 | None:intergenic | 35.0% |
| CCAACACCAAAACAATCAAA+AGG | - | chr7_2:28323920-28323939 | Msa1055070:intron | 35.0% | |
| CAAATCAGATAACCAGCTGT+TGG | + | chr7_2:28320475-28320494 | None:intergenic | 40.0% | |
| CAACAGCTGGTTATCTGATT+TGG | - | chr7_2:28320473-28320492 | Msa1055070:CDS | 40.0% | |
| !! | ATGGTGTTGATTTGAGACCA+TGG | - | chr7_2:28321359-28321378 | Msa1055070:CDS | 40.0% |
| AACCTAATACACTCACTCCA+TGG | + | chr7_2:28321379-28321398 | None:intergenic | 40.0% | |
| CGAAACCTTGCCTCATATTT+AGG | - | chr7_2:28321565-28321584 | Msa1055070:intron | 40.0% | |
| TTTCTTGTAAATAGGACCGG+AGG | - | chr7_2:28321771-28321790 | Msa1055070:intron | 40.0% | |
| TTCTTGTAAATAGGACCGGA+GGG | - | chr7_2:28321772-28321791 | Msa1055070:intron | 40.0% | |
| GCAACAAAGGACATGACTTA+CGG | + | chr7_2:28321891-28321910 | None:intergenic | 40.0% | |
| TAGACGGAGAAATGCAACAA+AGG | + | chr7_2:28321904-28321923 | None:intergenic | 40.0% | |
| TTTGTTGCATTTCTCCGTCT+AGG | - | chr7_2:28321903-28321922 | Msa1055070:intron | 40.0% | |
| TTGGTTGGATTTGACCTAGA+CGG | + | chr7_2:28321920-28321939 | None:intergenic | 40.0% | |
| CCATTATGAGCAAGTTTGGT+TGG | + | chr7_2:28321935-28321954 | None:intergenic | 40.0% | |
| ! | CCAACCAAACTTGCTCATAA+TGG | - | chr7_2:28321932-28321951 | Msa1055070:intron | 40.0% |
| TTGGCCATTATGAGCAAGTT+TGG | + | chr7_2:28321939-28321958 | None:intergenic | 40.0% | |
| CCCGAATTTCCTTATAGATG+TGG | - | chr7_2:28322206-28322225 | Msa1055070:CDS | 40.0% | |
| GAAGCTCTTCCACATCTATA+AGG | + | chr7_2:28322218-28322237 | None:intergenic | 40.0% | |
| !! | TTTGGGGTGTTGTCAAAACA+TGG | + | chr7_2:28322405-28322424 | None:intergenic | 40.0% |
| ! | TTTTCTCGATGACTCTTCTG+AGG | + | chr7_2:28322523-28322542 | None:intergenic | 40.0% |
| CAGAAGAGTCATCGAGAAAA+AGG | - | chr7_2:28322523-28322542 | Msa1055070:CDS | 40.0% | |
| AAAAGGTCTCGTGGTAATCA+TGG | - | chr7_2:28322540-28322559 | Msa1055070:CDS | 40.0% | |
| AAGGTTCTCATCACATGAAG+AGG | + | chr7_2:28323548-28323567 | None:intergenic | 40.0% | |
| GAGAACCTTCATAGTGTTGT+TGG | - | chr7_2:28323559-28323578 | Msa1055070:intron | 40.0% | |
| ACTCTTGCTTCCACTTGAAA+TGG | + | chr7_2:28323589-28323608 | None:intergenic | 40.0% | |
| AAGTGGAAGCAAGAGTCTTA+GGG | - | chr7_2:28323593-28323612 | Msa1055070:intron | 40.0% | |
| AATCCGTTGCCTAAACGTTT+AGG | - | chr7_2:28324168-28324187 | Msa1055070:intron | 40.0% | |
| CAACCTAAACGTTTAGGCAA+CGG | + | chr7_2:28324174-28324193 | None:intergenic | 40.0% | |
| !! | TTGCCTAAACGTTTAGGTTG+CGG | - | chr7_2:28324174-28324193 | Msa1055070:intron | 40.0% |
| AAACCGCAACCTAAACGTTT+AGG | + | chr7_2:28324180-28324199 | None:intergenic | 40.0% | |
| !!! | ACGTTTAGGTTGCGGTTTTT+AGG | - | chr7_2:28324182-28324201 | Msa1055070:intron | 40.0% |
| ACTTGTGAAGAACATACGCA+TGG | - | chr7_2:28324342-28324361 | Msa1055070:CDS | 40.0% | |
| AATCGACATCAACCAACAGC+TGG | - | chr7_2:28320460-28320479 | Msa1055070:CDS | 45.0% | |
| AGTATGAGTACCCGTTTCCA+CGG | - | chr7_2:28320565-28320584 | Msa1055070:intron | 45.0% | |
| ! | TTTTAACGTCCCGTGGAAAC+GGG | + | chr7_2:28320578-28320597 | None:intergenic | 45.0% |
| !! | GTTTTAACGTCCCGTGGAAA+CGG | + | chr7_2:28320579-28320598 | None:intergenic | 45.0% |
| !! | AGCAAAGTTTTAACGTCCCG+TGG | + | chr7_2:28320585-28320604 | None:intergenic | 45.0% |
| GACCATGGAGTGAGTGTATT+AGG | - | chr7_2:28321374-28321393 | Msa1055070:CDS | 45.0% | |
| ACACATCGAAATTGGCACTG+AGG | + | chr7_2:28321409-28321428 | None:intergenic | 45.0% | |
| AGGAGCCTAAATATGAGGCA+AGG | + | chr7_2:28321573-28321592 | None:intergenic | 45.0% | |
| ! | GAAGGGTGGATCATACCTTT+TGG | + | chr7_2:28322048-28322067 | None:intergenic | 45.0% |
| ACCAGTGTCTCCAACTGAAA+TGG | - | chr7_2:28322473-28322492 | Msa1055070:CDS | 45.0% | |
| TCCATTTCAGTTGGAGACAC+TGG | + | chr7_2:28322477-28322496 | None:intergenic | 45.0% | |
| TCATCGAGAAAAAGGTCTCG+TGG | - | chr7_2:28322531-28322550 | Msa1055070:CDS | 45.0% | |
| CAAGTGGAAGCAAGAGTCTT+AGG | - | chr7_2:28323592-28323611 | Msa1055070:intron | 45.0% | |
| !! | GCAAAATTAAAGGGTGCTGG+TGG | + | chr7_2:28323952-28323971 | None:intergenic | 45.0% |
| ! | GTGGCAAAATTAAAGGGTGC+TGG | + | chr7_2:28323955-28323974 | None:intergenic | 45.0% |
| CGACGCAAAATCGTGGTTAA+AGG | - | chr7_2:28324140-28324159 | Msa1055070:intron | 45.0% | |
| !!! | TTACAATTTTTTTAATATAT+TGG | + | chr7_2:28321958-28321977 | None:intergenic | 5.0% |
| !!! | CATTTATATAATTATTTTAA+AGG | - | chr7_2:28322781-28322800 | Msa1055070:intron | 5.0% |
| !! | TATTTATTCAAATAATTTAA+TGG | - | chr7_2:28323174-28323193 | Msa1055070:intron | 5.0% |
| GTATGAGTACCCGTTTCCAC+GGG | - | chr7_2:28320566-28320585 | Msa1055070:intron | 50.0% | |
| ATCACACTAAGCCGCCAAGT+GGG | + | chr7_2:28321341-28321360 | None:intergenic | 50.0% | |
| GTTGCTGAGAGTTGTGTGAG+TGG | + | chr7_2:28322304-28322323 | None:intergenic | 50.0% | |
| CAAGTGGTTGTGACCAAACC+AGG | - | chr7_2:28323502-28323521 | Msa1055070:intron | 50.0% | |
| ! | GATCCAATGCCAAGAGCACA+GGG | - | chr7_2:28323633-28323652 | Msa1055070:intron | 50.0% |
| ! | ATCCAATGCCAAGAGCACAG+GGG | - | chr7_2:28323634-28323653 | Msa1055070:intron | 50.0% |
| CTATAAGTCCCCTGTGCTCT+TGG | + | chr7_2:28323645-28323664 | None:intergenic | 50.0% | |
| GGTCTCTACCTGAGCAATGA+TGG | + | chr7_2:28323749-28323768 | None:intergenic | 50.0% | |
| TAGGCTACGACGCAAAATCG+TGG | - | chr7_2:28324133-28324152 | Msa1055070:intron | 50.0% | |
| !! | TAGGTTGCGGTTTTTAGGCG+TGG | - | chr7_2:28324187-28324206 | Msa1055070:intron | 50.0% |
| CATCACACTAAGCCGCCAAG+TGG | + | chr7_2:28321342-28321361 | None:intergenic | 55.0% | |
| CACTTGGCGGCTTAGTGTGA+TGG | - | chr7_2:28321340-28321359 | Msa1055070:CDS | 55.0% | |
| ! | GGATCCAATGCCAAGAGCAC+AGG | - | chr7_2:28323632-28323651 | Msa1055070:intron | 55.0% |
| CGACGTGACCATCATTGCTC+AGG | - | chr7_2:28323738-28323757 | Msa1055070:intron | 55.0% | |
| GTCCCCTGTGCTCTTGGCAT+TGG | + | chr7_2:28323639-28323658 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 28320429 | 28324390 | 28320429 | ID=Msa1055070;Name=Msa1055070 |
| chr7_2 | mRNA | 28320429 | 28324390 | 28320429 | ID=Msa1055070-mRNA-1;Parent=Msa1055070;Name=Msa1055070-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|0.75|1|1|4|0|331 |
| chr7_2 | exon | 28324325 | 28324390 | 28324325 | ID=Msa1055070-mRNA-1:exon:5919;Parent=Msa1055070-mRNA-1 |
| chr7_2 | exon | 28322166 | 28322651 | 28322166 | ID=Msa1055070-mRNA-1:exon:5918;Parent=Msa1055070-mRNA-1 |
| chr7_2 | exon | 28321060 | 28321422 | 28321060 | ID=Msa1055070-mRNA-1:exon:5917;Parent=Msa1055070-mRNA-1 |
| chr7_2 | exon | 28320429 | 28320509 | 28320429 | ID=Msa1055070-mRNA-1:exon:5916;Parent=Msa1055070-mRNA-1 |
| chr7_2 | CDS | 28324325 | 28324390 | 28324325 | ID=Msa1055070-mRNA-1:cds;Parent=Msa1055070-mRNA-1 |
| chr7_2 | CDS | 28322166 | 28322651 | 28322166 | ID=Msa1055070-mRNA-1:cds;Parent=Msa1055070-mRNA-1 |
| chr7_2 | CDS | 28321060 | 28321422 | 28321060 | ID=Msa1055070-mRNA-1:cds;Parent=Msa1055070-mRNA-1 |
| chr7_2 | CDS | 28320429 | 28320509 | 28320429 | ID=Msa1055070-mRNA-1:cds;Parent=Msa1055070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
