Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1056780 | KEH22261.1 | 87.124 | 233 | 22 | 1 | 1 | 225 | 1 | 233 | 1.74e-150 | 427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1056780 | sp|Q9S7L2|MYB98_ARATH | 40.000 | 115 | 57 | 3 | 62 | 164 | 211 | 325 | 1.37e-19 | 89.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1056780 | A0A072TYJ9 | 87.124 | 233 | 22 | 1 | 1 | 225 | 1 | 233 | 8.33e-151 | 427 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1056780 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1056780 | MtrunA17_Chr7g0228531 | 43.096 | 239 | 79 | 7 | 42 | 224 | 194 | 431 | 5.94e-50 | 168 |
| Msa1056780 | MtrunA17_Chr7g0228481 | 43.644 | 236 | 76 | 7 | 42 | 221 | 194 | 428 | 2.27e-46 | 159 |
| Msa1056780 | MtrunA17_Chr7g0233151 | 39.394 | 165 | 48 | 4 | 112 | 224 | 7 | 171 | 1.28e-27 | 103 |
| Msa1056780 | MtrunA17_Chr1g0177901 | 33.333 | 189 | 64 | 5 | 83 | 209 | 20 | 208 | 1.02e-21 | 89.0 |
| Msa1056780 | MtrunA17_Chr7g0233061 | 37.629 | 194 | 81 | 5 | 37 | 190 | 148 | 341 | 1.68e-21 | 91.3 |
| Msa1056780 | MtrunA17_Chr7g0228401 | 28.467 | 274 | 95 | 7 | 36 | 208 | 223 | 496 | 1.89e-21 | 92.0 |
| Msa1056780 | MtrunA17_Chr3g0117511 | 44.860 | 107 | 47 | 3 | 70 | 164 | 185 | 291 | 1.02e-20 | 89.7 |
| Msa1056780 | MtrunA17_Chr4g0058991 | 38.261 | 115 | 59 | 3 | 62 | 164 | 203 | 317 | 9.38e-19 | 84.3 |
| Msa1056780 | MtrunA17_Chr5g0429661 | 31.707 | 164 | 90 | 5 | 28 | 174 | 77 | 235 | 1.28e-18 | 83.2 |
| Msa1056780 | MtrunA17_Chr6g0460661 | 38.614 | 101 | 52 | 3 | 91 | 185 | 50 | 146 | 1.03e-14 | 69.3 |
| Msa1056780 | MtrunA17_Chr7g0238631 | 41.935 | 93 | 42 | 3 | 71 | 151 | 116 | 208 | 6.21e-14 | 70.5 |
| Msa1056780 | MtrunA17_Chr5g0397841 | 39.785 | 93 | 44 | 3 | 70 | 150 | 112 | 204 | 7.31e-14 | 70.1 |
| Msa1056780 | MtrunA17_Chr4g0008551 | 37.391 | 115 | 52 | 5 | 71 | 165 | 41 | 155 | 1.31e-13 | 68.9 |
| Msa1056780 | MtrunA17_Chr1g0157731 | 32.174 | 115 | 65 | 4 | 71 | 172 | 94 | 208 | 2.35e-13 | 68.9 |
| Msa1056780 | MtrunA17_Chr3g0139671 | 33.913 | 115 | 63 | 4 | 71 | 172 | 88 | 202 | 6.21e-13 | 67.4 |
| Msa1056780 | MtrunA17_Chr4g0046171 | 30.657 | 137 | 43 | 3 | 137 | 221 | 1 | 137 | 1.11e-12 | 63.2 |
| Msa1056780 | MtrunA17_Chr7g0233161 | 44.944 | 89 | 37 | 3 | 31 | 107 | 262 | 350 | 8.78e-12 | 63.5 |
| Msa1056780 | MtrunA17_Chr5g0417621 | 35.455 | 110 | 54 | 4 | 71 | 163 | 137 | 246 | 2.57e-11 | 62.4 |
| Msa1056780 | MtrunA17_Chr4g0042501 | 34.483 | 116 | 63 | 4 | 50 | 152 | 86 | 201 | 3.21e-11 | 62.0 |
| Msa1056780 | MtrunA17_Chr4g0070641 | 31.313 | 99 | 55 | 3 | 66 | 151 | 12 | 110 | 9.81e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1056780 | AT4G18770.1 | 40.000 | 115 | 57 | 3 | 62 | 164 | 211 | 325 | 1.39e-20 | 89.7 |
| Msa1056780 | AT3G27785.1 | 40.541 | 111 | 54 | 2 | 62 | 160 | 183 | 293 | 1.48e-19 | 86.7 |
| Msa1056780 | AT5G40360.1 | 40.678 | 118 | 56 | 3 | 60 | 164 | 150 | 266 | 1.75e-18 | 83.2 |
| Msa1056780 | AT2G25230.1 | 40.157 | 127 | 63 | 4 | 62 | 175 | 20 | 146 | 1.24e-17 | 79.0 |
| Msa1056780 | AT5G58850.1 | 38.532 | 109 | 55 | 3 | 65 | 161 | 102 | 210 | 1.54e-17 | 80.9 |
| Msa1056780 | AT5G11050.1 | 39.640 | 111 | 55 | 3 | 63 | 161 | 100 | 210 | 1.63e-17 | 80.9 |
| Msa1056780 | AT5G40430.1 | 35.758 | 165 | 89 | 6 | 62 | 209 | 48 | 212 | 3.39e-17 | 78.2 |
| Msa1056780 | AT5G11510.3 | 37.778 | 90 | 44 | 2 | 71 | 148 | 84 | 173 | 5.41e-13 | 68.2 |
| Msa1056780 | AT5G11510.1 | 37.778 | 90 | 44 | 2 | 71 | 148 | 84 | 173 | 5.41e-13 | 68.2 |
| Msa1056780 | AT5G11510.4 | 37.778 | 90 | 44 | 2 | 71 | 148 | 84 | 173 | 5.41e-13 | 68.2 |
| Msa1056780 | AT5G11510.2 | 37.778 | 90 | 44 | 2 | 71 | 148 | 84 | 173 | 5.89e-13 | 67.8 |
| Msa1056780 | AT5G11510.5 | 37.778 | 90 | 44 | 2 | 71 | 148 | 84 | 173 | 5.96e-13 | 67.8 |
| Msa1056780 | AT3G53200.2 | 41.667 | 72 | 40 | 2 | 78 | 148 | 1 | 71 | 1.15e-12 | 65.1 |
| Msa1056780 | AT5G02320.1 | 36.559 | 93 | 47 | 3 | 71 | 151 | 130 | 222 | 1.48e-12 | 66.6 |
| Msa1056780 | AT5G02320.2 | 36.559 | 93 | 47 | 3 | 71 | 151 | 130 | 222 | 1.48e-12 | 66.6 |
| Msa1056780 | AT5G02320.3 | 36.559 | 93 | 47 | 3 | 71 | 151 | 70 | 162 | 1.52e-12 | 66.6 |
| Msa1056780 | AT3G09370.1 | 38.710 | 93 | 45 | 3 | 71 | 151 | 133 | 225 | 2.95e-12 | 65.9 |
| Msa1056780 | AT3G09370.2 | 38.710 | 93 | 45 | 3 | 71 | 151 | 138 | 230 | 3.14e-12 | 65.5 |
| Msa1056780 | AT3G09370.3 | 38.710 | 93 | 45 | 3 | 71 | 151 | 146 | 238 | 3.40e-12 | 65.5 |
| Msa1056780 | AT3G28470.1 | 32.673 | 101 | 55 | 3 | 64 | 151 | 10 | 110 | 7.32e-12 | 63.9 |
| Msa1056780 | AT1G57560.2 | 29.545 | 132 | 82 | 4 | 93 | 218 | 51 | 177 | 8.80e-12 | 63.5 |
| Msa1056780 | AT1G69560.2 | 25.269 | 186 | 114 | 6 | 4 | 169 | 61 | 241 | 9.39e-12 | 63.9 |
| Msa1056780 | AT1G69560.1 | 25.269 | 186 | 114 | 6 | 4 | 169 | 45 | 225 | 9.70e-12 | 63.9 |
| Msa1056780 | AT2G47190.1 | 31.193 | 109 | 62 | 3 | 53 | 148 | 7 | 115 | 1.38e-11 | 62.8 |
| Msa1056780 | AT4G33450.1 | 43.243 | 74 | 37 | 2 | 93 | 165 | 55 | 124 | 1.39e-11 | 62.8 |
| Msa1056780 | AT3G53200.1 | 45.614 | 57 | 30 | 1 | 93 | 148 | 48 | 104 | 1.91e-11 | 62.0 |
| Msa1056780 | AT4G32730.1 | 34.409 | 93 | 49 | 3 | 71 | 151 | 90 | 182 | 2.95e-11 | 62.8 |
| Msa1056780 | AT1G57560.1 | 40.580 | 69 | 40 | 1 | 93 | 160 | 51 | 119 | 3.19e-11 | 62.4 |
| Msa1056780 | AT4G32730.5 | 34.409 | 93 | 49 | 3 | 71 | 151 | 90 | 182 | 3.50e-11 | 62.8 |
| Msa1056780 | AT4G32730.4 | 34.409 | 93 | 49 | 3 | 71 | 151 | 90 | 182 | 3.50e-11 | 62.8 |
| Msa1056780 | AT4G32730.3 | 34.409 | 93 | 49 | 3 | 71 | 151 | 90 | 182 | 3.50e-11 | 62.8 |
| Msa1056780 | AT4G32730.2 | 34.409 | 93 | 49 | 3 | 71 | 151 | 90 | 182 | 3.50e-11 | 62.8 |
Find 45 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTTATGTGGAAACGTTTA+AGG | 0.181442 | 7_2:-35581264 | None:intergenic |
| AACGATGATTATGAGTTATA+TGG | 0.223163 | 7_2:-35581339 | Msa1056780:CDS |
| GGCATTCTCGACTTGCTTAA+TGG | 0.229142 | 7_2:+35581470 | None:intergenic |
| ACTACTCCAGAAGATGAATT+TGG | 0.261057 | 7_2:-35581384 | Msa1056780:CDS |
| GATCAAGCCCACAACATATT+TGG | 0.264284 | 7_2:-35581564 | Msa1056780:CDS |
| AAAAGAAACACCTTAATATC+TGG | 0.291683 | 7_2:+35582076 | None:intergenic |
| CCATTGATCAGCATTTATAT+TGG | 0.314785 | 7_2:+35582337 | None:intergenic |
| AAATGATTGTACTCAATATA+AGG | 0.324688 | 7_2:-35582510 | Msa1056780:CDS |
| CCATCTTAAACCAGATATTA+AGG | 0.331529 | 7_2:-35582086 | Msa1056780:intron |
| GAATAGTATTCTGCTGCTTA+TGG | 0.333313 | 7_2:+35582390 | None:intergenic |
| GAAATTGATTTCCTGCTTCA+TGG | 0.333503 | 7_2:+35581293 | None:intergenic |
| ACCTTAAACGTTTCCACATA+AGG | 0.341962 | 7_2:+35581263 | None:intergenic |
| TATCCACCAAATTCATCTTC+TGG | 0.354153 | 7_2:+35581378 | None:intergenic |
| TAAGCAGCAGAATACTATTC+AGG | 0.381837 | 7_2:-35582387 | Msa1056780:CDS |
| TAATCATCGTTGAATGTCAT+TGG | 0.431930 | 7_2:+35581351 | None:intergenic |
| TTCCTGCTTCATGGGAACCT+CGG | 0.444432 | 7_2:+35581302 | None:intergenic |
| TCCTGCTTCATGGGAACCTC+GGG | 0.444652 | 7_2:+35581303 | None:intergenic |
| ACAACATATTTGGAGACAAC+TGG | 0.446422 | 7_2:-35581554 | Msa1056780:CDS |
| TCAATATAAGGATCATCATA+TGG | 0.455659 | 7_2:-35582498 | Msa1056780:CDS |
| GTTGTCTCCAAATATGTTGT+GGG | 0.463375 | 7_2:+35581557 | None:intergenic |
| TGCTTATGGTAAATGAGAAC+GGG | 0.465009 | 7_2:+35582404 | None:intergenic |
| AATTTCATGAAGGCCTTATG+TGG | 0.471697 | 7_2:-35581276 | Msa1056780:CDS |
| AAATTGATTTCCTGCTTCAT+GGG | 0.472609 | 7_2:+35581294 | None:intergenic |
| ATATTTGTATCCAATTTCAC+TGG | 0.483235 | 7_2:+35582445 | None:intergenic |
| CCTTAATATCTGGTTTAAGA+TGG | 0.484241 | 7_2:+35582086 | None:intergenic |
| AATGGACTACAAAAGAGAAT+AGG | 0.491834 | 7_2:-35582319 | Msa1056780:intron |
| TCCCGAGGTTCCCATGAAGC+AGG | 0.502564 | 7_2:-35581304 | Msa1056780:CDS |
| AGTTGTCTCCAAATATGTTG+TGG | 0.504440 | 7_2:+35581556 | None:intergenic |
| GAAATTTCAAGAAGATTGCC+AGG | 0.513813 | 7_2:-35581528 | Msa1056780:CDS |
| CCAATATAAATGCTGATCAA+TGG | 0.515462 | 7_2:-35582337 | Msa1056780:CDS |
| TGAGAACGGGTTCTTGATCA+TGG | 0.521600 | 7_2:+35582417 | None:intergenic |
| CTGCTTATGGTAAATGAGAA+CGG | 0.536086 | 7_2:+35582403 | None:intergenic |
| TGGATCTCTTTCTAAATCGA+TGG | 0.536456 | 7_2:-35582138 | Msa1056780:CDS |
| TAAAACAATGCATGGAGAGA+TGG | 0.560064 | 7_2:-35582111 | Msa1056780:CDS |
| ATGGACCTTAAAACAATGCA+TGG | 0.570560 | 7_2:-35582119 | Msa1056780:CDS |
| ACTCCAGAAGATGAATTTGG+TGG | 0.588319 | 7_2:-35581381 | Msa1056780:CDS |
| AGTACAATCATTTCGAGACA+AGG | 0.593762 | 7_2:+35582520 | None:intergenic |
| TAAGGATCATCATATGGATG+AGG | 0.593905 | 7_2:-35582492 | Msa1056780:CDS |
| GCAGGAAATCAATTTCATGA+AGG | 0.597528 | 7_2:-35581286 | Msa1056780:CDS |
| GAATGAGCCATTGAGTGAGG+AGG | 0.611909 | 7_2:-35581601 | Msa1056780:CDS |
| ACATAACTATCGTTACGTCC+TGG | 0.612302 | 7_2:+35581510 | None:intergenic |
| TGGTTGCAAAACTAGAGTGA+TGG | 0.623138 | 7_2:+35582465 | None:intergenic |
| GTACAATCATTTCGAGACAA+GGG | 0.643766 | 7_2:+35582521 | None:intergenic |
| TCGATTTAGAAAGAGATCCA+CGG | 0.651610 | 7_2:+35582141 | None:intergenic |
| GTAGAATGAGCCATTGAGTG+AGG | 0.657428 | 7_2:-35581604 | Msa1056780:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCATATATAGTTTTATTA+TGG | - | chr7_2:35581539-35581558 | Msa1056780:CDS | 10.0% |
| !!! | TTTCATATATAGTTTTATTA+TGG | - | chr7_2:35581539-35581558 | Msa1056780:CDS | 10.0% |
| !! | GTCTATATATAATTAAATAG+AGG | + | chr7_2:35582143-35582162 | None:intergenic | 15.0% |
| !! | GTCTATATATAATTAAATAG+AGG | + | chr7_2:35582143-35582162 | None:intergenic | 15.0% |
| !! | AAATGATTGTACTCAATATA+AGG | - | chr7_2:35581283-35581302 | Msa1056780:CDS | 20.0% |
| !!! | TGCTAAAAAAAGTGTTAAAA+AGG | + | chr7_2:35581748-35581767 | None:intergenic | 20.0% |
| !! | TTACGCAATAAAAGATAAAA+AGG | + | chr7_2:35581775-35581794 | None:intergenic | 20.0% |
| !!! | TATGATTTTATAACAACAAG+TGG | - | chr7_2:35581904-35581923 | Msa1056780:intron | 20.0% |
| !! | ATAAAAATATTGCACATGAA+TGG | - | chr7_2:35582091-35582110 | Msa1056780:CDS | 20.0% |
| !! | ATACAAAACATGTTTAGATT+AGG | + | chr7_2:35582165-35582184 | None:intergenic | 20.0% |
| !! | AAACCTTCAAAAATGTAATT+AGG | + | chr7_2:35582388-35582407 | None:intergenic | 20.0% |
| !! | AAATGATTGTACTCAATATA+AGG | - | chr7_2:35581283-35581302 | Msa1056780:CDS | 20.0% |
| !!! | TGCTAAAAAAAGTGTTAAAA+AGG | + | chr7_2:35581748-35581767 | None:intergenic | 20.0% |
| !! | TTACGCAATAAAAGATAAAA+AGG | + | chr7_2:35581775-35581794 | None:intergenic | 20.0% |
| !!! | TATGATTTTATAACAACAAG+TGG | - | chr7_2:35581904-35581923 | Msa1056780:intron | 20.0% |
| !! | ATAAAAATATTGCACATGAA+TGG | - | chr7_2:35582091-35582110 | Msa1056780:CDS | 20.0% |
| !! | ATACAAAACATGTTTAGATT+AGG | + | chr7_2:35582165-35582184 | None:intergenic | 20.0% |
| !! | AAACCTTCAAAAATGTAATT+AGG | + | chr7_2:35582388-35582407 | None:intergenic | 20.0% |
| ! | TCAATATAAGGATCATCATA+TGG | - | chr7_2:35581295-35581314 | Msa1056780:CDS | 25.0% |
| ! | ATATTTGTATCCAATTTCAC+TGG | + | chr7_2:35581351-35581370 | None:intergenic | 25.0% |
| ! | AAAAGAAACACCTTAATATC+TGG | + | chr7_2:35581720-35581739 | None:intergenic | 25.0% |
| !!! | TGTAAAAGCATTATATGTGT+AGG | + | chr7_2:35581799-35581818 | None:intergenic | 25.0% |
| ! | CATTTCATTGAAAAACCTAA+TGG | - | chr7_2:35582011-35582030 | Msa1056780:intron | 25.0% |
| ! | AAAAAATACACACATCCATT+AGG | + | chr7_2:35582029-35582048 | None:intergenic | 25.0% |
| ! | CTTCAAAAATGTAATTAGGT+TGG | + | chr7_2:35582384-35582403 | None:intergenic | 25.0% |
| !! | CAACCTAATTACATTTTTGA+AGG | - | chr7_2:35582382-35582401 | Msa1056780:CDS | 25.0% |
| ! | AACGATGATTATGAGTTATA+TGG | - | chr7_2:35582454-35582473 | Msa1056780:CDS | 25.0% |
| ! | TCAATATAAGGATCATCATA+TGG | - | chr7_2:35581295-35581314 | Msa1056780:CDS | 25.0% |
| ! | ATATTTGTATCCAATTTCAC+TGG | + | chr7_2:35581351-35581370 | None:intergenic | 25.0% |
| ! | AAAAGAAACACCTTAATATC+TGG | + | chr7_2:35581720-35581739 | None:intergenic | 25.0% |
| !!! | TGTAAAAGCATTATATGTGT+AGG | + | chr7_2:35581799-35581818 | None:intergenic | 25.0% |
| ! | CATTTCATTGAAAAACCTAA+TGG | - | chr7_2:35582011-35582030 | Msa1056780:intron | 25.0% |
| ! | AAAAAATACACACATCCATT+AGG | + | chr7_2:35582029-35582048 | None:intergenic | 25.0% |
| ! | CTTCAAAAATGTAATTAGGT+TGG | + | chr7_2:35582384-35582403 | None:intergenic | 25.0% |
| !! | CAACCTAATTACATTTTTGA+AGG | - | chr7_2:35582382-35582401 | Msa1056780:CDS | 25.0% |
| ! | AACGATGATTATGAGTTATA+TGG | - | chr7_2:35582454-35582473 | Msa1056780:CDS | 25.0% |
| CCATTGATCAGCATTTATAT+TGG | + | chr7_2:35581459-35581478 | None:intergenic | 30.0% | |
| CCAATATAAATGCTGATCAA+TGG | - | chr7_2:35581456-35581475 | Msa1056780:CDS | 30.0% | |
| !! | AATGGACTACAAAAGAGAAT+AGG | - | chr7_2:35581474-35581493 | Msa1056780:CDS | 30.0% |
| ! | CCTTAATATCTGGTTTAAGA+TGG | + | chr7_2:35581710-35581729 | None:intergenic | 30.0% |
| CCATCTTAAACCAGATATTA+AGG | - | chr7_2:35581707-35581726 | Msa1056780:intron | 30.0% | |
| ! | TTGTTTCTTACATTTGAGAC+CGG | - | chr7_2:35582056-35582075 | Msa1056780:intron | 30.0% |
| ! | TTTTTATTATGTACTCCCTC+CGG | + | chr7_2:35582078-35582097 | None:intergenic | 30.0% |
| ATGGAAACAAATTGGTGAAA+TGG | - | chr7_2:35582110-35582129 | Msa1056780:CDS | 30.0% | |
| TAATCATCGTTGAATGTCAT+TGG | + | chr7_2:35582445-35582464 | None:intergenic | 30.0% | |
| ! | AAATTGATTTCCTGCTTCAT+GGG | + | chr7_2:35582502-35582521 | None:intergenic | 30.0% |
| CCATTGATCAGCATTTATAT+TGG | + | chr7_2:35581459-35581478 | None:intergenic | 30.0% | |
| CCAATATAAATGCTGATCAA+TGG | - | chr7_2:35581456-35581475 | Msa1056780:CDS | 30.0% | |
| !! | AATGGACTACAAAAGAGAAT+AGG | - | chr7_2:35581474-35581493 | Msa1056780:CDS | 30.0% |
| ! | CCTTAATATCTGGTTTAAGA+TGG | + | chr7_2:35581710-35581729 | None:intergenic | 30.0% |
| CCATCTTAAACCAGATATTA+AGG | - | chr7_2:35581707-35581726 | Msa1056780:intron | 30.0% | |
| ! | TTGTTTCTTACATTTGAGAC+CGG | - | chr7_2:35582056-35582075 | Msa1056780:intron | 30.0% |
| ! | TTTTTATTATGTACTCCCTC+CGG | + | chr7_2:35582078-35582097 | None:intergenic | 30.0% |
| ATGGAAACAAATTGGTGAAA+TGG | - | chr7_2:35582110-35582129 | Msa1056780:CDS | 30.0% | |
| TAATCATCGTTGAATGTCAT+TGG | + | chr7_2:35582445-35582464 | None:intergenic | 30.0% | |
| ! | AAATTGATTTCCTGCTTCAT+GGG | + | chr7_2:35582502-35582521 | None:intergenic | 30.0% |
| GTACAATCATTTCGAGACAA+GGG | + | chr7_2:35581275-35581294 | None:intergenic | 35.0% | |
| AGTACAATCATTTCGAGACA+AGG | + | chr7_2:35581276-35581295 | None:intergenic | 35.0% | |
| TAAGGATCATCATATGGATG+AGG | - | chr7_2:35581301-35581320 | Msa1056780:CDS | 35.0% | |
| ! | AGTTTTGCAACCAGTGAAAT+TGG | - | chr7_2:35581338-35581357 | Msa1056780:CDS | 35.0% |
| TGCTTATGGTAAATGAGAAC+GGG | + | chr7_2:35581392-35581411 | None:intergenic | 35.0% | |
| CTGCTTATGGTAAATGAGAA+CGG | + | chr7_2:35581393-35581412 | None:intergenic | 35.0% | |
| ! | GAATAGTATTCTGCTGCTTA+TGG | + | chr7_2:35581406-35581425 | None:intergenic | 35.0% |
| TAAGCAGCAGAATACTATTC+AGG | - | chr7_2:35581406-35581425 | Msa1056780:CDS | 35.0% | |
| TCGATTTAGAAAGAGATCCA+CGG | + | chr7_2:35581655-35581674 | None:intergenic | 35.0% | |
| TGGATCTCTTTCTAAATCGA+TGG | - | chr7_2:35581655-35581674 | Msa1056780:intron | 35.0% | |
| ATGGACCTTAAAACAATGCA+TGG | - | chr7_2:35581674-35581693 | Msa1056780:intron | 35.0% | |
| !! | TCTCTCCATGCATTGTTTTA+AGG | + | chr7_2:35581682-35581701 | None:intergenic | 35.0% |
| TAAAACAATGCATGGAGAGA+TGG | - | chr7_2:35581682-35581701 | Msa1056780:intron | 35.0% | |
| GCACATGAATGGAAACAAAT+TGG | - | chr7_2:35582102-35582121 | Msa1056780:CDS | 35.0% | |
| GTTGTCTCCAAATATGTTGT+GGG | + | chr7_2:35582239-35582258 | None:intergenic | 35.0% | |
| AGTTGTCTCCAAATATGTTG+TGG | + | chr7_2:35582240-35582259 | None:intergenic | 35.0% | |
| ACAACATATTTGGAGACAAC+TGG | - | chr7_2:35582239-35582258 | Msa1056780:intron | 35.0% | |
| GAAATTTCAAGAAGATTGCC+AGG | - | chr7_2:35582265-35582284 | Msa1056780:intron | 35.0% | |
| AGAATGCCAAGAAAAAATCC+AGG | - | chr7_2:35582338-35582357 | Msa1056780:CDS | 35.0% | |
| !!! | CATGTTCCTGGATTTTTTCT+TGG | + | chr7_2:35582347-35582366 | None:intergenic | 35.0% |
| CAAGAAAAAATCCAGGAACA+TGG | - | chr7_2:35582345-35582364 | Msa1056780:CDS | 35.0% | |
| ! | CTTAATTTTCACCATGTTCC+TGG | + | chr7_2:35582359-35582378 | None:intergenic | 35.0% |
| ACTACTCCAGAAGATGAATT+TGG | - | chr7_2:35582409-35582428 | Msa1056780:CDS | 35.0% | |
| TATCCACCAAATTCATCTTC+TGG | + | chr7_2:35582418-35582437 | None:intergenic | 35.0% | |
| ! | GAAATTGATTTCCTGCTTCA+TGG | + | chr7_2:35582503-35582522 | None:intergenic | 35.0% |
| GCAGGAAATCAATTTCATGA+AGG | - | chr7_2:35582507-35582526 | Msa1056780:CDS | 35.0% | |
| ! | AATTTCATGAAGGCCTTATG+TGG | - | chr7_2:35582517-35582536 | Msa1056780:CDS | 35.0% |
| GTACAATCATTTCGAGACAA+GGG | + | chr7_2:35581275-35581294 | None:intergenic | 35.0% | |
| AGTACAATCATTTCGAGACA+AGG | + | chr7_2:35581276-35581295 | None:intergenic | 35.0% | |
| TAAGGATCATCATATGGATG+AGG | - | chr7_2:35581301-35581320 | Msa1056780:CDS | 35.0% | |
| ! | AGTTTTGCAACCAGTGAAAT+TGG | - | chr7_2:35581338-35581357 | Msa1056780:CDS | 35.0% |
| TGCTTATGGTAAATGAGAAC+GGG | + | chr7_2:35581392-35581411 | None:intergenic | 35.0% | |
| CTGCTTATGGTAAATGAGAA+CGG | + | chr7_2:35581393-35581412 | None:intergenic | 35.0% | |
| ! | GAATAGTATTCTGCTGCTTA+TGG | + | chr7_2:35581406-35581425 | None:intergenic | 35.0% |
| TAAGCAGCAGAATACTATTC+AGG | - | chr7_2:35581406-35581425 | Msa1056780:CDS | 35.0% | |
| TCGATTTAGAAAGAGATCCA+CGG | + | chr7_2:35581655-35581674 | None:intergenic | 35.0% | |
| TGGATCTCTTTCTAAATCGA+TGG | - | chr7_2:35581655-35581674 | Msa1056780:intron | 35.0% | |
| ATGGACCTTAAAACAATGCA+TGG | - | chr7_2:35581674-35581693 | Msa1056780:intron | 35.0% | |
| !! | TCTCTCCATGCATTGTTTTA+AGG | + | chr7_2:35581682-35581701 | None:intergenic | 35.0% |
| TAAAACAATGCATGGAGAGA+TGG | - | chr7_2:35581682-35581701 | Msa1056780:intron | 35.0% | |
| GCACATGAATGGAAACAAAT+TGG | - | chr7_2:35582102-35582121 | Msa1056780:CDS | 35.0% | |
| GTTGTCTCCAAATATGTTGT+GGG | + | chr7_2:35582239-35582258 | None:intergenic | 35.0% | |
| AGTTGTCTCCAAATATGTTG+TGG | + | chr7_2:35582240-35582259 | None:intergenic | 35.0% | |
| ACAACATATTTGGAGACAAC+TGG | - | chr7_2:35582239-35582258 | Msa1056780:intron | 35.0% | |
| GAAATTTCAAGAAGATTGCC+AGG | - | chr7_2:35582265-35582284 | Msa1056780:intron | 35.0% | |
| AGAATGCCAAGAAAAAATCC+AGG | - | chr7_2:35582338-35582357 | Msa1056780:CDS | 35.0% | |
| !!! | CATGTTCCTGGATTTTTTCT+TGG | + | chr7_2:35582347-35582366 | None:intergenic | 35.0% |
| CAAGAAAAAATCCAGGAACA+TGG | - | chr7_2:35582345-35582364 | Msa1056780:CDS | 35.0% | |
| ! | CTTAATTTTCACCATGTTCC+TGG | + | chr7_2:35582359-35582378 | None:intergenic | 35.0% |
| ACTACTCCAGAAGATGAATT+TGG | - | chr7_2:35582409-35582428 | Msa1056780:CDS | 35.0% | |
| TATCCACCAAATTCATCTTC+TGG | + | chr7_2:35582418-35582437 | None:intergenic | 35.0% | |
| ! | GAAATTGATTTCCTGCTTCA+TGG | + | chr7_2:35582503-35582522 | None:intergenic | 35.0% |
| GCAGGAAATCAATTTCATGA+AGG | - | chr7_2:35582507-35582526 | Msa1056780:CDS | 35.0% | |
| ! | AATTTCATGAAGGCCTTATG+TGG | - | chr7_2:35582517-35582536 | Msa1056780:CDS | 35.0% |
| TGGTTGCAAAACTAGAGTGA+TGG | + | chr7_2:35581331-35581350 | None:intergenic | 40.0% | |
| ! | TAGCATTTTTGTCGAATCCG+TGG | - | chr7_2:35581635-35581654 | Msa1056780:intron | 40.0% |
| ! | TTTCTTACATTTGAGACCGG+AGG | - | chr7_2:35582059-35582078 | Msa1056780:intron | 40.0% |
| ! | TTCTTACATTTGAGACCGGA+GGG | - | chr7_2:35582060-35582079 | Msa1056780:intron | 40.0% |
| GATCAAGCCCACAACATATT+TGG | - | chr7_2:35582229-35582248 | Msa1056780:intron | 40.0% | |
| ACATAACTATCGTTACGTCC+TGG | + | chr7_2:35582286-35582305 | None:intergenic | 40.0% | |
| ACTCCAGAAGATGAATTTGG+TGG | - | chr7_2:35582412-35582431 | Msa1056780:CDS | 40.0% | |
| !! | TGGATTAGAGTTTTATCCCG+AGG | - | chr7_2:35582474-35582493 | Msa1056780:CDS | 40.0% |
| TGGTTGCAAAACTAGAGTGA+TGG | + | chr7_2:35581331-35581350 | None:intergenic | 40.0% | |
| ! | TAGCATTTTTGTCGAATCCG+TGG | - | chr7_2:35581635-35581654 | Msa1056780:intron | 40.0% |
| ! | TTTCTTACATTTGAGACCGG+AGG | - | chr7_2:35582059-35582078 | Msa1056780:intron | 40.0% |
| ! | TTCTTACATTTGAGACCGGA+GGG | - | chr7_2:35582060-35582079 | Msa1056780:intron | 40.0% |
| GATCAAGCCCACAACATATT+TGG | - | chr7_2:35582229-35582248 | Msa1056780:intron | 40.0% | |
| ACATAACTATCGTTACGTCC+TGG | + | chr7_2:35582286-35582305 | None:intergenic | 40.0% | |
| ACTCCAGAAGATGAATTTGG+TGG | - | chr7_2:35582412-35582431 | Msa1056780:CDS | 40.0% | |
| !! | TGGATTAGAGTTTTATCCCG+AGG | - | chr7_2:35582474-35582493 | Msa1056780:CDS | 40.0% |
| ! | TGAGAACGGGTTCTTGATCA+TGG | + | chr7_2:35581379-35581398 | None:intergenic | 45.0% |
| GTAGAATGAGCCATTGAGTG+AGG | - | chr7_2:35582189-35582208 | Msa1056780:intron | 45.0% | |
| ! | TTTTGCTCCTCCTCACTCAA+TGG | + | chr7_2:35582202-35582221 | None:intergenic | 45.0% |
| ! | GGCATTCTCGACTTGCTTAA+TGG | + | chr7_2:35582326-35582345 | None:intergenic | 45.0% |
| ! | TGAGAACGGGTTCTTGATCA+TGG | + | chr7_2:35581379-35581398 | None:intergenic | 45.0% |
| GTAGAATGAGCCATTGAGTG+AGG | - | chr7_2:35582189-35582208 | Msa1056780:intron | 45.0% | |
| ! | TTTTGCTCCTCCTCACTCAA+TGG | + | chr7_2:35582202-35582221 | None:intergenic | 45.0% |
| ! | GGCATTCTCGACTTGCTTAA+TGG | + | chr7_2:35582326-35582345 | None:intergenic | 45.0% |
| !!! | TTTTTTTTATTTATTTTATG+CGG | + | chr7_2:35581833-35581852 | None:intergenic | 5.0% |
| !!! | TTTTTTTTATTTATTTTATG+CGG | + | chr7_2:35581833-35581852 | None:intergenic | 5.0% |
| GAATGAGCCATTGAGTGAGG+AGG | - | chr7_2:35582192-35582211 | Msa1056780:intron | 50.0% | |
| TTCCTGCTTCATGGGAACCT+CGG | + | chr7_2:35582494-35582513 | None:intergenic | 50.0% | |
| GAATGAGCCATTGAGTGAGG+AGG | - | chr7_2:35582192-35582211 | Msa1056780:intron | 50.0% | |
| TTCCTGCTTCATGGGAACCT+CGG | + | chr7_2:35582494-35582513 | None:intergenic | 50.0% | |
| TCCTGCTTCATGGGAACCTC+GGG | + | chr7_2:35582493-35582512 | None:intergenic | 55.0% | |
| TCCTGCTTCATGGGAACCTC+GGG | + | chr7_2:35582493-35582512 | None:intergenic | 55.0% | |
| TCCCGAGGTTCCCATGAAGC+AGG | - | chr7_2:35582489-35582508 | Msa1056780:CDS | 60.0% | |
| TCCCGAGGTTCCCATGAAGC+AGG | - | chr7_2:35582489-35582508 | Msa1056780:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 35581266 | 35582549 | 35581266 | ID=Msa1056780;Name=Msa1056780 |
| chr7_2 | mRNA | 35581266 | 35582549 | 35581266 | ID=Msa1056780-mRNA-1;Parent=Msa1056780;Name=Msa1056780-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|3|0|225 |
| chr7_2 | exon | 35582320 | 35582549 | 35582320 | ID=Msa1056780-mRNA-1:exon:6912;Parent=Msa1056780-mRNA-1 |
| chr7_2 | exon | 35582087 | 35582177 | 35582087 | ID=Msa1056780-mRNA-1:exon:6911;Parent=Msa1056780-mRNA-1 |
| chr7_2 | exon | 35581266 | 35581622 | 35581266 | ID=Msa1056780-mRNA-1:exon:6910;Parent=Msa1056780-mRNA-1 |
| chr7_2 | CDS | 35582320 | 35582549 | 35582320 | ID=Msa1056780-mRNA-1:cds;Parent=Msa1056780-mRNA-1 |
| chr7_2 | CDS | 35582087 | 35582177 | 35582087 | ID=Msa1056780-mRNA-1:cds;Parent=Msa1056780-mRNA-1 |
| chr7_2 | CDS | 35581266 | 35581622 | 35581266 | ID=Msa1056780-mRNA-1:cds;Parent=Msa1056780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
